Information for 1-VACAAAGGVK (Motif 1)

T G C A C G T A T A G C C G T A C T G A C G T A C T A G T C A G T A G C C A T G
Reverse Opposite:
G T A C A T C G A G T C A G T C G C A T A G C T A C G T A T C G A C G T A C G T
p-value:1e-116
log p-value:-2.677e+02
Information Content per bp:1.705
Number of Target Sequences with motif2548.0
Percentage of Target Sequences with motif15.62%
Number of Background Sequences with motif3267.0
Percentage of Background Sequences with motif9.86%
Average Position of motif in Targets100.3 +/- 54.6bp
Average Position of motif in Background100.1 +/- 57.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.2/Jaspar

Match Rank:1
Score:0.96
Offset:-2
Orientation:forward strand
Alignment:--VACAAAGGVK
AAAACAAAGAA-
 A C G T A C G T T G C A C G T A T A G C C G T A C T G A C G T A C T A G T C A G T A G C C A T G
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T

SOX4/MA0867.2/Jaspar

Match Rank:2
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-VACAAAGGVK
GAACAAAGGG-
 A C G T T G C A C G T A T A G C C G T A C T G A C G T A C T A G T C A G T A G C C A T G
C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--VACAAAGGVK
VRRACAAWGG--
 A C G T A C G T T G C A C G T A T A G C C G T A C T G A C G T A C T A G T C A G T A G C C A T G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--VACAAAGGVK
AAAACAAAGG--
 A C G T A C G T T G C A C G T A T A G C C G T A C T G A C G T A C T A G T C A G T A G C C A T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:VACAAAGGVK
RACAAWGG--
 T G C A C G T A T A G C C G T A C T G A C G T A C T A G T C A G T A G C C A T G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:6
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---VACAAAGGVK
BMRVACAAWGGV-
 A C G T A C G T A C G T T G C A C G T A T A G C C G T A C T G A C G T A C T A G T C A G T A G C C A T G
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--VACAAAGGVK
GGAACAAAGR--
 A C G T A C G T T G C A C G T A T A G C C G T A C T G A C G T A C T A G T C A G T A G C C A T G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----VACAAAGGVK--
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T T G C A C G T A T A G C C G T A C T G A C G T A C T A G T C A G T A G C C A T G A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.90
Offset:-5
Orientation:forward strand
Alignment:-----VACAAAGGVK--
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T T G C A C G T A T A G C C G T A C T G A C G T A C T A G T C A G T A G C C A T G A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:VACAAAGGVK---
-ACAAAGGNBCCT
 T G C A C G T A T A G C C G T A C T G A C G T A C T A G T C A G T A G C C A T G A C G T A C G T A C G T
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T