Information for 21-GGGCTGTAATAA (Motif 29)

C A T G T A C G A T C G A T G C C G A T A C T G C G A T G C T A G T C A A C G T T G C A C G T A
Reverse Opposite:
G C A T A C G T T G C A C A G T C A G T G C T A T A G C G C T A T A C G T A G C A G T C G T A C
p-value:1e-17
log p-value:-4.044e+01
Information Content per bp:1.703
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets94.4 +/- 49.8bp
Average Position of motif in Background95.2 +/- 51.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGGCTGTAATAA--
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T C A T G T A C G A T C G A T G C C G A T A C T G C G A T G C T A G T C A A C G T T G C A C G T A A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGGCTGTAATAA--
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T C A T G T A C G A T C G A T G C C G A T A C T G C G A T G C T A G T C A A C G T T G C A C G T A A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGGCTGTAATAA--
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T C A T G T A C G A T C G A T G C C G A T A C T G C G A T G C T A G T C A A C G T T G C A C G T A A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGGCTGTAATAA
AGGTCTCTAACC-
 A C G T C A T G T A C G A T C G A T G C C G A T A C T G C G A T G C T A G T C A A C G T T G C A C G T A
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGGCTGTAATAA--
NNNTTTNTAATACNG
 A C G T C A T G T A C G A T C G A T G C C G A T A C T G C G A T G C T A G T C A A C G T T G C A C G T A A C G T A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

PH0023.1_Dlx4/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGGCTGTAATAA------
-GTCGGTAATTATNGNGN
 C A T G T A C G A T C G A T G C C G A T A C T G C G A T G C T A G T C A A C G T T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C G A T A T G C C A T G A C T G G A C T C G T A C G T A A C G T G C A T C T G A G A C T G T C A A C T G A G T C C A T G T G A C

PH0022.1_Dlx3/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGGCTGTAATAA------
-NNNGGTAATTATNGNGN
 C A T G T A C G A T C G A T G C C G A T A C T G C G A T G C T A G T C A A C G T T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C G A T A T G C C A T G T C A G G A C T G C T A C G T A A C G T C G A T C T G A G A C T G T A C A C T G A G T C C A T G T G C A

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGGCTGTAATAA------
--TAGGTAATAAAATTCA
 C A T G T A C G A T C G A T G C C G A T A C T G C G A T G C T A G T C A A C G T T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GGGCTGTAATAA---
-----GTCATAAAAN
 C A T G T A C G A T C G A T G C C G A T A C T G C G A T G C T A G T C A A C G T T G C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GGGCTGTAATAA-
---NDGTAATTAC
 C A T G T A C G A T C G A T G C C G A T A C T G C G A T G C T A G T C A A C G T T G C A C G T A A C G T
A C G T A C G T A C G T T C G A C A G T A C T G A G C T C G T A C G T A A C G T A C G T C T G A T A G C