Information for 3-CTGCCARD (Motif 3)

A G T C A C G T A C T G G A T C A G T C C G T A T C A G C G T A
Reverse Opposite:
G C A T A G T C A C G T A C T G C T A G A G T C C G T A T C A G
p-value:1e-65
log p-value:-1.514e+02
Information Content per bp:1.734
Number of Target Sequences with motif5208.0
Percentage of Target Sequences with motif31.93%
Number of Background Sequences with motif8584.8
Percentage of Background Sequences with motif25.90%
Average Position of motif in Targets98.9 +/- 55.8bp
Average Position of motif in Background100.3 +/- 57.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CTGCCARD
TTGCCAAG
 A G T C A C G T A C T G G A T C A G T C C G T A T C A G C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CTGCCARD
VGCTGWCAVB
 A C G T A C G T A G T C A C G T A C T G G A T C A G T C C G T A T C A G C G T A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCARD
RHTGWCAR-
 A C G T A G T C A C G T A C T G G A T C A G T C C G T A T C A G C G T A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCARD
ARNTGACA--
 A C G T A C G T A G T C A C G T A C T G G A T C A G T C C G T A T C A G C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCARD
GCTGTCAA-
 A C G T A G T C A C G T A C T G G A T C A G T C C G T A T C A G C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCARD
VGCTGGCA--
 A C G T A C G T A G T C A C G T A C T G G A T C A G T C C G T A T C A G C G T A
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CTGCCARD
CGTGCCAAG
 A C G T A G T C A C G T A C T G G A T C A G T C C G T A T C A G C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCARD
CCTGTCAA-
 A C G T A G T C A C G T A C T G G A T C A G T C C G T A T C A G C G T A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-CTGCCARD-
GGTGCCAAGT
 A C G T A G T C A C G T A C T G G A T C A G T C C G T A T C A G C G T A A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CTGCCARD
NTGTCAN-
 A G T C A C G T A C T G G A T C A G T C C G T A T C A G C G T A
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T