Information for 5-GCWAATTA (Motif 5)

A C T G A T G C G C A T T C G A G C T A G A C T A C G T C G T A
Reverse Opposite:
G C A T T G C A C T G A C G A T A G C T C G T A T A C G T G A C
p-value:1e-62
log p-value:-1.440e+02
Information Content per bp:1.406
Number of Target Sequences with motif2714.0
Percentage of Target Sequences with motif16.64%
Number of Background Sequences with motif4027.0
Percentage of Background Sequences with motif12.15%
Average Position of motif in Targets98.9 +/- 55.0bp
Average Position of motif in Background99.8 +/- 60.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GCWAATTA
NCTAATTA
 A C T G A T G C G C A T T C G A G C T A G A C T A C G T C G T A
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A

NOTO/MA0710.1/Jaspar

Match Rank:2
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GCWAATTA--
GCTAATTAGC
 A C T G A T G C G C A T T C G A G C T A G A C T A C G T C G T A A C G T A C G T
T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

VSX2/MA0726.1/Jaspar

Match Rank:3
Score:0.85
Offset:1
Orientation:forward strand
Alignment:GCWAATTA-
-CTAATTAG
 A C T G A T G C G C A T T C G A G C T A G A C T A C G T C G T A A C G T
A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

VSX1/MA0725.1/Jaspar

Match Rank:4
Score:0.85
Offset:1
Orientation:forward strand
Alignment:GCWAATTA-
-CTAATTAT
 A C T G A T G C G C A T T C G A G C T A G A C T A C G T C G T A A C G T
A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer

Match Rank:5
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GCWAATTA-
NGCTAATTAG
 A C G T A C T G A T G C G C A T T C G A G C T A G A C T A C G T C G T A A C G T
A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G

En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer

Match Rank:6
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GCWAATTA-
NDCTAATTAS
 A C G T A C T G A T G C G C A T T C G A G C T A G A C T A C G T C G T A A C G T
T C A G C T A G A T G C G A C T T G C A C G T A A G C T A C G T C T G A T A C G

LHX9/MA0701.2/Jaspar

Match Rank:7
Score:0.84
Offset:1
Orientation:forward strand
Alignment:GCWAATTA-
-CTAATTAA
 A C T G A T G C G C A T T C G A G C T A G A C T A C G T C G T A A C G T
A C G T A G T C A G C T G T C A C G T A A C G T A C G T C T G A T C G A

PRRX2/MA0075.3/Jaspar

Match Rank:8
Score:0.83
Offset:1
Orientation:forward strand
Alignment:GCWAATTA-
-CTAATTAA
 A C T G A T G C G C A T T C G A G C T A G A C T A C G T C G T A A C G T
A C G T A G T C A G C T T G C A C G T A A C G T A C G T T C G A C T G A

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:9
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GCWAATTA-
NNYTAATTAR
 A C G T A C T G A T G C G C A T T C G A G C T A G A C T A C G T C G T A A C G T
C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G

Lhx8/MA0705.1/Jaspar

Match Rank:10
Score:0.83
Offset:1
Orientation:forward strand
Alignment:GCWAATTA-
-CTAATTAG
 A C T G A T G C G C A T T C G A G C T A G A C T A C G T C G T A A C G T
A C G T A G T C A G C T T C G A C G T A A C G T A G C T C T G A T C A G