Information for 4-GTTGCCAA (Motif 13)

A C T G G A C T G A C T C T A G G A T C T G A C T C G A C T G A
Reverse Opposite:
G A C T A G C T A C T G C T A G G A T C C T G A C T G A T G A C
p-value:1e-10
log p-value:-2.355e+01
Information Content per bp:1.594
Number of Target Sequences with motif101.0
Percentage of Target Sequences with motif33.55%
Number of Background Sequences with motif8311.8
Percentage of Background Sequences with motif17.92%
Average Position of motif in Targets95.6 +/- 55.0bp
Average Position of motif in Background99.2 +/- 67.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:GTTGCCAA--
GGTGCCAAGT
 A C T G G A C T G A C T C T A G G A T C T G A C T C G A C T G A A C G T A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.86
Offset:1
Orientation:forward strand
Alignment:GTTGCCAA-
-TTGCCAAG
 A C T G G A C T G A C T C T A G G A T C T G A C T C G A C T G A A C G T
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GTTGCCAA-
CGTGCCAAG
 A C T G G A C T G A C T C T A G G A T C T G A C T C G A C T G A A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:GTTGCCAA---
NNTGCCAAGNN
 A C T G G A C T G A C T C T A G G A T C T G A C T C G A C T G A A C G T A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

RFX7/MA1554.1/Jaspar

Match Rank:5
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCAA
CGTTGCTAT
 A C G T A C T G G A C T G A C T C T A G G A T C T G A C T C G A C T G A
A T G C A T C G A G C T A G C T C T A G A T G C A G C T C T G A G A C T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GTTGCCAA--
-ATGCCAACC
 A C T G G A C T G A C T C T A G G A T C T G A C T C G A C T G A A C G T A C G T
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCAA--
CTGTTGCTAGGS
 A C G T A C G T A C T G G A C T G A C T C T A G G A T C T G A C T C G A C T G A A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

RFX1/MA0509.2/Jaspar

Match Rank:8
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCAA----
CTGTTGCTATGGCA
 A C G T A C G T A C T G G A C T G A C T C T A G G A T C T G A C T C G A C T G A A C G T A C G T A C G T A C G T
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCAA----
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C T G G A C T G A C T C T A G G A T C T G A C T C G A C T G A A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:10
Score:0.74
Offset:2
Orientation:forward strand
Alignment:GTTGCCAA--
--TGCCAGCB
 A C T G G A C T G A C T C T A G G A T C T G A C T C G A C T G A A C G T A C G T
A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G