Information for 1-TGCTAATTAG (Motif 2)

C G A T A T C G A T G C G A C T T G C A G C T A C G A T C G A T C T G A C T A G
Reverse Opposite:
G A T C G A C T G C T A G C T A C G A T A C G T C T G A T A C G T A G C G C T A
p-value:1e-16
log p-value:-3.739e+01
Information Content per bp:1.536
Number of Target Sequences with motif128.0
Percentage of Target Sequences with motif42.52%
Number of Background Sequences with motif9800.8
Percentage of Background Sequences with motif21.13%
Average Position of motif in Targets101.2 +/- 53.0bp
Average Position of motif in Background100.0 +/- 66.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:TGCTAATTAG
NGCTAATTAG
 C G A T A T C G A T G C G A C T T G C A G C T A C G A T C G A T C T G A C T A G
A T G C T A C G A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G

LHX6/MA0658.1/Jaspar

Match Rank:2
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:TGCTAATTAG-
-NCTAATTAGT
 C G A T A T C G A T G C G A C T T G C A G C T A C G A T C G A T C T G A C T A G A C G T
A C G T T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T

PH0098.1_Lhx8/Jaspar

Match Rank:3
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAATTAG----
CACCGCTAATTAGNNGN
 A C G T A C G T A C G T C G A T A T C G A T G C G A C T T G C A G C T A C G A T C G A T C T G A C T A G A C G T A C G T A C G T A C G T
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T

PH0155.1_Prrx2/Jaspar

Match Rank:4
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATTAG-----
AAAGCTAATTAGCGAAA
 A C G T A C G T C G A T A T C G A T G C G A C T T G C A G C T A C G A T C G A T C T G A C T A G A C G T A C G T A C G T A C G T A C G T
C G T A T G C A G T C A T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A T G C T G A C G T A C T G A

PAX4/MA0068.2/Jaspar

Match Rank:5
Score:0.87
Offset:2
Orientation:forward strand
Alignment:TGCTAATTAG
--CTAATTAG
 C G A T A T C G A T G C G A C T T G C A G C T A C G A T C G A T C T G A C T A G
A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G

PH0032.1_Evx2/Jaspar

Match Rank:6
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---TGCTAATTAG----
CACCGCTAATTAGCGGT
 A C G T A C G T A C G T C G A T A T C G A T G C G A C T T G C A G C T A C G A T C G A T C T G A C T A G A C G T A C G T A C G T A C G T
A G T C T G C A G A T C G T A C T C A G A T G C A G C T T G C A C G T A A C G T A C G T C T G A A T C G A T G C A C T G A C G T G C A T

PH0097.1_Lhx6_2/Jaspar

Match Rank:7
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAATTAG----
NNNCGCTAATTAGNNGA
 A C G T A C G T A C G T C G A T A T C G A T G C G A C T T G C A G C T A C G A T C G A T C T G A C T A G A C G T A C G T A C G T A C G T
T G C A G C T A G A T C G T A C T C A G G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G C T C A T G A C T G C G T A

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:8
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:TGCTAATTAG
-NCTAATTA-
 C G A T A T C G A T G C G A C T T G C A G C T A C G A T C G A T C T G A C T A G
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

PH0034.1_Gbx2/Jaspar

Match Rank:9
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATTAG-----
AGCGCTAATTAGCGATT
 A C G T A C G T C G A T A T C G A T G C G A C T T G C A G C T A C G A T C G A T C T G A C T A G A C G T A C G T A C G T A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

EMX2/MA0886.1/Jaspar

Match Rank:10
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:TGCTAATTAG-
-NCTAATTANN
 C G A T A T C G A T G C G A C T T G C A G C T A C G A T C G A T C T G A C T A G A C G T
A C G T T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C