Information for 17-GTCACTCAAA (Motif 25)

C T A G C A G T T G A C C G T A A T G C G A C T A T G C C T G A G C T A C G T A
Reverse Opposite:
C G A T C G A T G A C T A T C G C T G A T A C G G C A T A C T G G T C A G A T C
p-value:1e-6
log p-value:-1.497e+01
Information Content per bp:1.688
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif8.64%
Number of Background Sequences with motif1261.6
Percentage of Background Sequences with motif2.72%
Average Position of motif in Targets98.7 +/- 46.8bp
Average Position of motif in Background100.6 +/- 62.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX1/MA0782.2/Jaspar

Match Rank:1
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----GTCACTCAAA
NNGCTGTCACTCANN
 A C G T A C G T A C G T A C G T A C G T C T A G C A G T T G A C C G T A A T G C G A C T A T G C C T G A G C T A C G T A
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GTCACTCAAA
SCTGTCAVTCAV-
 A C G T A C G T A C G T C T A G C A G T T G A C C G T A A T G C G A C T A T G C C T G A G C T A C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

PBX3/MA1114.1/Jaspar

Match Rank:3
Score:0.76
Offset:-6
Orientation:reverse strand
Alignment:------GTCACTCAAA-
NNNCCTGTCACTCANNN
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C A G T T G A C C G T A A T G C G A C T A T G C C T G A G C T A C G T A A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

NKX2-5/MA0063.2/Jaspar

Match Rank:4
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GTCACTCAAA-
ACCACTCAAAA
 C T A G C A G T T G A C C G T A A T G C G A C T A T G C C T G A G C T A C G T A A C G T
T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GTCACTCAAA
NCTGTCAATCAN-
 A C G T A C G T A C G T C T A G C A G T T G A C C G T A A T G C G A C T A T G C C T G A G C T A C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GTCACTCAAA
GSCTGTCACTCA--
 A C G T A C G T A C G T A C G T C T A G C A G T T G A C C G T A A T G C G A C T A T G C C T G A G C T A C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

NKX2-2/MA1645.1/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GTCACTCAAA--
TAACCACTCAAGAA
 A C G T A C G T C T A G C A G T T G A C C G T A A T G C G A C T A T G C C T G A G C T A C G T A A C G T A C G T
G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GTCACTCAAA
CCATCAATCAAA
 A C G T A C G T C T A G C A G T T G A C C G T A A T G C G A C T A T G C C T G A G C T A C G T A
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTCACTCAAA
AGTCACGC---
 A C G T C T A G C A G T T G A C C G T A A T G C G A C T A T G C C T G A G C T A C G T A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTCACTCAAA
AGCCACTCAAG
 A C G T C T A G C A G T T G A C C G T A A T G C G A C T A T G C C T G A G C T A C G T A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G