Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 301)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46388)	% of Background Sequences with Motif
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-10	-2.520e+01	0.0000	89.0	29.57%	6675.2	14.39%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-9	-2.188e+01	0.0000	81.0	26.91%	6177.3	13.32%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-9	-2.119e+01	0.0000	94.0	31.23%	7804.7	16.83%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-8	-1.993e+01	0.0000	103.0	34.22%	9112.0	19.65%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-8	-1.897e+01	0.0000	107.0	35.55%	9784.8	21.10%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-7	-1.818e+01	0.0000	144.0	47.84%	14937.2	32.21%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-7	-1.651e+01	0.0000	84.0	27.91%	7314.2	15.77%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-7	-1.631e+01	0.0000	96.0	31.89%	8849.3	19.08%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-6	-1.558e+01	0.0000	107.0	35.55%	10415.3	22.46%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-6	-1.543e+01	0.0000	59.0	19.60%	4533.6	9.78%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-6	-1.514e+01	0.0000	79.0	26.25%	6930.7	14.95%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-6	-1.419e+01	0.0000	57.0	18.94%	4478.4	9.66%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-6	-1.418e+01	0.0000	77.0	25.58%	6849.3	14.77%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-6	-1.410e+01	0.0000	52.0	17.28%	3930.6	8.48%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-5	-1.277e+01	0.0001	75.0	24.92%	6855.6	14.78%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-4	-1.145e+01	0.0003	135.0	44.85%	15259.1	32.91%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-4	-1.125e+01	0.0003	82.0	27.24%	8047.6	17.35%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-1.019e+01	0.0009	41.0	13.62%	3246.2	7.00%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-4	-9.874e+00	0.0012	125.0	41.53%	14271.3	30.78%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-4	-9.666e+00	0.0014	63.0	20.93%	5962.8	12.86%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-3	-9.121e+00	0.0023	83.0	27.57%	8673.8	18.70%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-3	-7.881e+00	0.0076	43.0	14.29%	3858.8	8.32%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-3	-7.298e+00	0.0130	73.0	24.25%	7818.7	16.86%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-3	-7.231e+00	0.0133	66.0	21.93%	6908.7	14.90%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-3	-6.914e+00	0.0175	9.0	2.99%	381.9	0.82%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-2	-6.528e+00	0.0247	58.0	19.27%	6043.4	13.03%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-2	-5.992e+00	0.0407	58.0	19.27%	6187.6	13.34%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-2	-5.967e+00	0.0407	4.0	1.33%	86.8	0.19%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-2	-5.855e+00	0.0435	40.0	13.29%	3904.7	8.42%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-2	-5.743e+00	0.0470	24.0	7.97%	2002.9	4.32%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-5.581e+00	0.0535	62.0	20.60%	6839.8	14.75%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.535e+00	0.0543	157.0	52.16%	20571.5	44.36%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-2	-5.246e+00	0.0702	23.0	7.64%	1969.4	4.25%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-2	-5.162e+00	0.0742	42.0	13.95%	4325.0	9.33%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-2	-5.082e+00	0.0780	83.0	27.57%	9900.5	21.35%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-2	-5.015e+00	0.0811	28.0	9.30%	2605.6	5.62%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-4.839e+00	0.0941	44.0	14.62%	4669.0	10.07%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-4.546e+00	0.1228	12.0	3.99%	851.8	1.84%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-4.271e+00	0.1577	19.0	6.31%	1672.4	3.61%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-4.249e+00	0.1577	60.0	19.93%	7007.4	15.11%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-4.194e+00	0.1619	60.0	19.93%	7027.9	15.16%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-4.076e+00	0.1778	34.0	11.30%	3578.3	7.72%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-3.964e+00	0.1943	27.0	8.97%	2712.6	5.85%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-3.955e+00	0.1943	24.0	7.97%	2339.9	5.05%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-3.780e+00	0.2231	79.0	26.25%	9866.7	21.28%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-3.737e+00	0.2278	37.0	12.29%	4068.9	8.77%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-3.728e+00	0.2278	15.0	4.98%	1299.3	2.80%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-3.719e+00	0.2278	14.0	4.65%	1186.0	2.56%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.672e+00	0.2282	66.0	21.93%	8068.8	17.40%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.658e+00	0.2282	42.0	13.95%	4761.4	10.27%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-3.634e+00	0.2282	156.0	51.83%	21373.5	46.09%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-3.533e+00	0.2472	11.0	3.65%	874.1	1.88%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-3.527e+00	0.2472	34.0	11.30%	3735.2	8.05%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-1	-3.503e+00	0.2472	38.0	12.62%	4275.9	9.22%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.470e+00	0.2490	8.0	2.66%	559.7	1.21%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-3.423e+00	0.2562	29.0	9.63%	3109.3	6.71%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.392e+00	0.2597	98.0	32.56%	12809.6	27.62%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-3.359e+00	0.2638	43.0	14.29%	5000.7	10.78%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.354e+00	0.2638	11.0	3.65%	900.4	1.94%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.349e+00	0.2638	2.0	0.66%	45.7	0.10%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.318e+00	0.2638	34.0	11.30%	3800.5	8.20%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.275e+00	0.2683	14.0	4.65%	1261.3	2.72%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.232e+00	0.2758	33.0	10.96%	3694.7	7.97%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.218e+00	0.2758	26.0	8.64%	2776.2	5.99%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-3.088e+00	0.3088	36.0	11.96%	4145.7	8.94%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-2.932e+00	0.3553	35.0	11.63%	4064.1	8.76%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-2.864e+00	0.3747	11.0	3.65%	979.1	2.11%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.803e+00	0.3923	74.0	24.58%	9624.3	20.75%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-2.791e+00	0.3923	97.0	32.23%	12999.9	28.03%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.778e+00	0.3923	8.0	2.66%	646.6	1.39%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-2.642e+00	0.4412	32.0	10.63%	3760.0	8.11%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.618e+00	0.4458	41.0	13.62%	5012.3	10.81%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-1	-2.609e+00	0.4458	15.0	4.98%	1521.3	3.28%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-1	-2.580e+00	0.4504	18.0	5.98%	1912.5	4.12%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-2.572e+00	0.4504	68.0	22.59%	8880.6	19.15%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-2.525e+00	0.4633	19.0	6.31%	2057.4	4.44%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.462e+00	0.4871	11.0	3.65%	1054.3	2.27%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-2.435e+00	0.4940	26.0	8.64%	3018.4	6.51%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.344e+00	0.5345	39.0	12.96%	4852.0	10.46%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-2.314e+00	0.5436	41.0	13.62%	5146.1	11.10%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.292e+00	0.5488	83.0	27.57%	11241.3	24.24%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-2.282e+00	0.5488	21.0	6.98%	2395.9	5.17%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.266e+00	0.5497	4.0	1.33%	273.2	0.59%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.251e+00	0.5515	27.0	8.97%	3221.5	6.95%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.187e+00	0.5809	5.0	1.66%	390.2	0.84%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-2.171e+00	0.5838	36.0	11.96%	4507.4	9.72%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.140e+00	0.5950	52.0	17.28%	6805.4	14.68%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.120e+00	0.6004	31.0	10.30%	3828.8	8.26%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.085e+00	0.6144	9.0	2.99%	883.3	1.90%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-2.070e+00	0.6170	26.0	8.64%	3153.2	6.80%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.067e+00	0.6170	36.0	11.96%	4555.8	9.82%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.048e+00	0.6170	34.0	11.30%	4281.4	9.23%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.047e+00	0.6170	56.0	18.60%	7437.6	16.04%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.037e+00	0.6170	59.0	19.60%	7880.1	16.99%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.974e+00	0.6435	63.0	20.93%	8504.7	18.34%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.936e+00	0.6614	16.0	5.32%	1834.8	3.96%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.935e+00	0.6614	4.0	1.33%	310.9	0.67%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.921e+00	0.6614	13.0	4.32%	1438.1	3.10%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.910e+00	0.6614	30.0	9.97%	3780.9	8.15%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.835e+00	0.7021	26.0	8.64%	3250.4	7.01%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.817e+00	0.7082	4.0	1.33%	325.6	0.70%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.806e+00	0.7086	31.0	10.30%	3970.8	8.56%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.798e+00	0.7086	34.0	11.30%	4402.3	9.49%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.787e+00	0.7086	8.0	2.66%	820.4	1.77%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.787e+00	0.7086	2.0	0.66%	113.1	0.24%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.782e+00	0.7086	34.0	11.30%	4410.8	9.51%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.779e+00	0.7086	4.0	1.33%	330.5	0.71%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.760e+00	0.7086	42.0	13.95%	5574.5	12.02%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.736e+00	0.7113	18.0	5.98%	2175.9	4.69%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.729e+00	0.7113	31.0	10.30%	4008.3	8.64%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.699e+00	0.7252	16.0	5.32%	1913.2	4.13%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.680e+00	0.7322	75.0	24.92%	10484.8	22.61%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.648e+00	0.7493	24.0	7.97%	3051.6	6.58%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.646e+00	0.7493	11.0	3.65%	1250.5	2.70%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.645e+00	0.7493	21.0	6.98%	2629.7	5.67%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.580e+00	0.7812	16.0	5.32%	1956.4	4.22%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.561e+00	0.7892	11.0	3.65%	1275.8	2.75%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.557e+00	0.7892	10.0	3.32%	1141.1	2.46%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.542e+00	0.7914	2.0	0.66%	133.5	0.29%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.533e+00	0.7914	8.0	2.66%	880.7	1.90%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.533e+00	0.7914	23.0	7.64%	2962.4	6.39%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.530e+00	0.7914	24.0	7.97%	3106.7	6.70%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.526e+00	0.7914	18.0	5.98%	2257.2	4.87%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.518e+00	0.7914	23.0	7.64%	2969.2	6.40%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.518e+00	0.7914	49.0	16.28%	6749.2	14.55%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.516e+00	0.7914	19.0	6.31%	2402.4	5.18%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.511e+00	0.7914	6.0	1.99%	623.4	1.34%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.493e+00	0.7914	19.0	6.31%	2412.7	5.20%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.488e+00	0.7914	7.0	2.33%	759.7	1.64%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.468e+00	0.7914	5.0	1.66%	503.6	1.09%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.443e+00	0.7937	53.0	17.61%	7394.3	15.95%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.429e+00	0.7984	6.0	1.99%	641.0	1.38%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.418e+00	0.8012	14.0	4.65%	1739.0	3.75%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.392e+00	0.8159	16.0	5.32%	2030.1	4.38%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.383e+00	0.8171	8.0	2.66%	920.5	1.99%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.374e+00	0.8188	19.0	6.31%	2465.8	5.32%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.373e+00	0.8188	1.0	0.33%	45.1	0.10%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.371e+00	0.8188	39.0	12.96%	5376.5	11.59%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.362e+00	0.8188	17.0	5.65%	2185.9	4.71%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-1.360e+00	0.8188	67.0	22.26%	9547.3	20.59%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.351e+00	0.8188	55.0	18.27%	7761.7	16.74%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.340e+00	0.8188	3.0	1.00%	273.5	0.59%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.339e+00	0.8188	6.0	1.99%	662.9	1.43%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.321e+00	0.8188	10.0	3.32%	1214.8	2.62%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.291e+00	0.8349	17.0	5.65%	2217.1	4.78%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.289e+00	0.8349	3.0	1.00%	281.0	0.61%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.286e+00	0.8349	12.0	3.99%	1507.5	3.25%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-1.234e+00	0.8656	12.0	3.99%	1527.9	3.29%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.218e+00	0.8736	20.0	6.64%	2686.2	5.79%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.215e+00	0.8736	30.0	9.97%	4153.0	8.96%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.213e+00	0.8736	21.0	6.98%	2834.8	6.11%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.203e+00	0.8736	31.0	10.30%	4308.6	9.29%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.194e+00	0.8736	12.0	3.99%	1543.8	3.33%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.190e+00	0.8736	117.0	38.87%	17291.7	37.29%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.180e+00	0.8736	3.0	1.00%	299.2	0.65%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-1.169e+00	0.8759	21.0	6.98%	2858.5	6.16%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.143e+00	0.8938	4.0	1.33%	439.0	0.95%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.139e+00	0.8938	44.0	14.62%	6289.8	13.56%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.132e+00	0.8938	9.0	2.99%	1139.7	2.46%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.119e+00	0.8981	39.0	12.96%	5557.6	11.98%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.116e+00	0.8981	5.0	1.66%	582.1	1.26%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.102e+00	0.9020	23.0	7.64%	3192.0	6.88%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.096e+00	0.9023	81.0	26.91%	11912.8	25.69%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.067e+00	0.9229	7.0	2.33%	877.1	1.89%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.051e+00	0.9322	4.0	1.33%	460.2	0.99%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.007e+00	0.9684	1.0	0.33%	70.7	0.15%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.001e+00	0.9685	9.0	2.99%	1189.6	2.57%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-9.989e-01	0.9685	5.0	1.66%	614.9	1.33%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.885e-01	0.9689	5.0	1.66%	617.3	1.33%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-9.879e-01	0.9689	3.0	1.00%	336.0	0.72%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-9.850e-01	0.9689	17.0	5.65%	2373.5	5.12%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-9.829e-01	0.9689	16.0	5.32%	2226.9	4.80%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-9.758e-01	0.9689	12.0	3.99%	1639.7	3.54%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-9.736e-01	0.9689	22.0	7.31%	3124.5	6.74%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-9.699e-01	0.9689	42.0	13.95%	6132.3	13.22%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-9.616e-01	0.9689	8.0	2.66%	1059.2	2.28%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-9.616e-01	0.9689	100.0	33.22%	14963.8	32.27%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-9.564e-01	0.9689	2.0	0.66%	205.3	0.44%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.531e-01	0.9689	12.0	3.99%	1651.0	3.56%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-9.394e-01	0.9689	43.0	14.29%	6311.2	13.61%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-9.370e-01	0.9689	45.0	14.95%	6616.7	14.27%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-9.158e-01	0.9689	5.0	1.66%	639.3	1.38%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-9.144e-01	0.9689	11.0	3.65%	1521.3	3.28%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-9.102e-01	0.9689	2.0	0.66%	213.4	0.46%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-9.057e-01	0.9689	9.0	2.99%	1229.6	2.65%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-9.046e-01	0.9689	2.0	0.66%	214.8	0.46%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-8.936e-01	0.9689	1.0	0.33%	81.7	0.18%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-8.807e-01	0.9701	31.0	10.30%	4547.2	9.81%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-8.703e-01	0.9751	25.0	8.31%	3648.1	7.87%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.659e-01	0.9751	32.0	10.63%	4711.5	10.16%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-8.572e-01	0.9775	1.0	0.33%	85.9	0.19%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-8.452e-01	0.9842	10.0	3.32%	1406.8	3.03%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-8.429e-01	0.9842	37.0	12.29%	5491.9	11.84%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-8.412e-01	0.9842	8.0	2.66%	1109.3	2.39%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-8.398e-01	0.9842	1.0	0.33%	87.1	0.19%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-8.328e-01	0.9842	13.0	4.32%	1863.5	4.02%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-8.307e-01	0.9842	29.0	9.63%	4286.4	9.24%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-8.280e-01	0.9842	68.0	22.59%	10237.7	22.08%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.211e-01	0.9842	55.0	18.27%	8258.9	17.81%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-8.205e-01	0.9842	14.0	4.65%	2021.7	4.36%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-8.203e-01	0.9842	26.0	8.64%	3839.4	8.28%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-8.162e-01	0.9842	6.0	1.99%	821.7	1.77%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-8.145e-01	0.9842	11.0	3.65%	1572.9	3.39%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-8.064e-01	0.9842	70.0	23.26%	10570.3	22.79%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-8.051e-01	0.9842	5.0	1.66%	676.2	1.46%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-8.027e-01	0.9842	4.0	1.33%	528.1	1.14%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-8.002e-01	0.9842	13.0	4.32%	1882.8	4.06%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-7.976e-01	0.9842	30.0	9.97%	4468.0	9.63%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-7.864e-01	0.9842	10.0	3.32%	1436.9	3.10%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-7.855e-01	0.9842	39.0	12.96%	5852.9	12.62%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.826e-01	0.9842	17.0	5.65%	2500.4	5.39%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.802e-01	0.9842	5.0	1.66%	685.4	1.48%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-7.689e-01	0.9842	30.0	9.97%	4493.8	9.69%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-7.655e-01	0.9842	90.0	29.90%	13692.1	29.53%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-7.490e-01	0.9842	67.0	22.26%	10184.3	21.96%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-7.322e-01	0.9842	25.0	8.31%	3761.7	8.11%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-7.246e-01	0.9842	8.0	2.66%	1164.1	2.51%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-7.211e-01	0.9842	3.0	1.00%	403.7	0.87%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-7.142e-01	0.9842	19.0	6.31%	2856.5	6.16%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-7.006e-01	0.9926	22.0	7.31%	3328.4	7.18%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-6.919e-01	0.9967	7.0	2.33%	1027.1	2.21%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-6.806e-01	1.0000	29.0	9.63%	4425.0	9.54%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.761e-01	1.0000	58.0	19.27%	8897.4	19.19%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.718e-01	1.0000	7.0	2.33%	1037.1	2.24%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.702e-01	1.0000	2.0	0.66%	264.5	0.57%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.669e-01	1.0000	55.0	18.27%	8447.1	18.22%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-6.657e-01	1.0000	1.0	0.33%	111.2	0.24%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-6.630e-01	1.0000	20.0	6.64%	3052.2	6.58%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.586e-01	1.0000	4.0	1.33%	578.4	1.25%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-6.538e-01	1.0000	33.0	10.96%	5069.1	10.93%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.471e-01	1.0000	2.0	0.66%	270.1	0.58%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-6.411e-01	1.0000	5.0	1.66%	741.7	1.60%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-6.396e-01	1.0000	2.0	0.66%	272.3	0.59%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.340e-01	1.0000	27.0	8.97%	4162.6	8.98%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-6.250e-01	1.0000	24.0	7.97%	3706.9	7.99%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.158e-01	1.0000	8.0	2.66%	1223.6	2.64%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-6.090e-01	1.0000	6.0	1.99%	914.0	1.97%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.069e-01	1.0000	9.0	2.99%	1385.3	2.99%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-5.991e-01	1.0000	3.0	1.00%	443.0	0.96%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-5.915e-01	1.0000	21.0	6.98%	3272.2	7.06%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-5.829e-01	1.0000	2.0	0.66%	289.0	0.62%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-5.819e-01	1.0000	41.0	13.62%	6394.7	13.79%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.793e-01	1.0000	22.0	7.31%	3440.6	7.42%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-5.726e-01	1.0000	5.0	1.66%	773.2	1.67%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.712e-01	1.0000	1.0	0.33%	128.6	0.28%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.694e-01	1.0000	3.0	1.00%	454.3	0.98%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.599e-01	1.0000	2.0	0.66%	295.9	0.64%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-5.519e-01	1.0000	9.0	2.99%	1421.6	3.07%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-5.503e-01	1.0000	2.0	0.66%	298.1	0.64%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-5.488e-01	1.0000	3.0	1.00%	462.0	1.00%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-5.478e-01	1.0000	30.0	9.97%	4724.8	10.19%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.401e-01	1.0000	10.0	3.32%	1588.4	3.43%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-5.365e-01	1.0000	22.0	7.31%	3484.8	7.51%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-5.174e-01	1.0000	14.0	4.65%	2241.3	4.83%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-5.057e-01	1.0000	31.0	10.30%	4933.6	10.64%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-5.038e-01	1.0000	5.0	1.66%	809.9	1.75%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-5.029e-01	1.0000	15.0	4.98%	2413.7	5.21%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-4.997e-01	1.0000	6.0	1.99%	974.3	2.10%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-4.991e-01	1.0000	17.0	5.65%	2734.5	5.90%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.854e-01	1.0000	2.0	0.66%	320.6	0.69%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.759e-01	1.0000	7.0	2.33%	1152.4	2.49%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-4.672e-01	1.0000	9.0	2.99%	1483.8	3.20%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-4.637e-01	1.0000	12.0	3.99%	1970.4	4.25%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-4.584e-01	1.0000	29.0	9.63%	4681.8	10.10%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-4.564e-01	1.0000	3.0	1.00%	502.9	1.08%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.460e-01	1.0000	5.0	1.66%	843.5	1.82%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-4.409e-01	1.0000	2.0	0.66%	337.2	0.73%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-4.409e-01	1.0000	10.0	3.32%	1667.6	3.60%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-4.401e-01	1.0000	37.0	12.29%	5970.7	12.88%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.371e-01	1.0000	28.0	9.30%	4553.0	9.82%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.357e-01	1.0000	15.0	4.98%	2480.0	5.35%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.317e-01	1.0000	5.0	1.66%	852.4	1.84%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-4.299e-01	1.0000	14.0	4.65%	2325.3	5.01%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-4.255e-01	1.0000	5.0	1.66%	856.7	1.85%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-4.130e-01	1.0000	66.0	21.93%	10570.8	22.80%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.913e-01	1.0000	8.0	2.66%	1382.9	2.98%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.806e-01	1.0000	10.0	3.32%	1723.3	3.72%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.748e-01	1.0000	2.0	0.66%	366.3	0.79%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-3.742e-01	1.0000	1.0	0.33%	179.0	0.39%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-3.709e-01	1.0000	26.0	8.64%	4330.4	9.34%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.644e-01	1.0000	13.0	4.32%	2234.4	4.82%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-3.433e-01	1.0000	136.0	45.18%	21612.2	46.61%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-3.420e-01	1.0000	17.0	5.65%	2917.4	6.29%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-3.396e-01	1.0000	57.0	18.94%	9314.8	20.09%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.352e-01	1.0000	3.0	1.00%	569.3	1.23%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-3.323e-01	1.0000	4.0	1.33%	749.2	1.62%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-3.318e-01	1.0000	86.0	28.57%	13884.1	29.94%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-3.309e-01	1.0000	7.0	2.33%	1269.7	2.74%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-3.308e-01	1.0000	6.0	1.99%	1098.2	2.37%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-3.163e-01	1.0000	34.0	11.30%	5708.8	12.31%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-3.155e-01	1.0000	85.0	28.24%	13771.2	29.70%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.135e-01	1.0000	7.0	2.33%	1286.4	2.77%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.063e-01	1.0000	4.0	1.33%	769.2	1.66%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.054e-01	1.0000	20.0	6.64%	3462.3	7.47%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.052e-01	1.0000	2.0	0.66%	403.4	0.87%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.986e-01	1.0000	40.0	13.29%	6706.4	14.46%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.920e-01	1.0000	5.0	1.66%	959.7	2.07%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.795e-01	1.0000	14.0	4.65%	2511.5	5.42%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.792e-01	1.0000	20.0	6.64%	3506.3	7.56%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.709e-01	1.0000	3.0	1.00%	615.6	1.33%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.709e-01	1.0000	16.0	5.32%	2858.4	6.16%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.686e-01	1.0000	27.0	8.97%	4672.6	10.08%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.670e-01	1.0000	5.0	1.66%	983.5	2.12%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.617e-01	1.0000	13.0	4.32%	2370.9	5.11%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.600e-01	1.0000	2.0	0.66%	432.5	0.93%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.555e-01	1.0000	19.0	6.31%	3383.1	7.30%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.465e-01	1.0000	4.0	1.33%	822.6	1.77%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.407e-01	1.0000	1.0	0.33%	237.2	0.51%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.355e-01	1.0000	2.0	0.66%	450.3	0.97%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.355e-01	1.0000	2.0	0.66%	450.3	0.97%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.319e-01	1.0000	15.0	4.98%	2757.4	5.95%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.306e-01	1.0000	7.0	2.33%	1381.4	2.98%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.304e-01	1.0000	21.0	6.98%	3764.4	8.12%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.255e-01	1.0000	5.0	1.66%	1028.1	2.22%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.234e-01	1.0000	10.0	3.32%	1917.7	4.14%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.227e-01	1.0000	10.0	3.32%	1918.8	4.14%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.216e-01	1.0000	13.0	4.32%	2436.4	5.25%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-2.204e-01	1.0000	5.0	1.66%	1034.7	2.23%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.179e-01	1.0000	15.0	4.98%	2783.3	6.00%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-2.175e-01	1.0000	90.0	29.90%	14861.4	32.05%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.119e-01	1.0000	17.0	5.65%	3134.0	6.76%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.000e-01	1.0000	9.0	2.99%	1780.3	3.84%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.999e-01	1.0000	13.0	4.32%	2476.3	5.34%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.994e-01	1.0000	37.0	12.29%	6471.1	13.95%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.985e-01	1.0000	44.0	14.62%	7610.5	16.41%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.962e-01	1.0000	4.0	1.33%	877.9	1.89%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.897e-01	1.0000	37.0	12.29%	6500.1	14.02%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.878e-01	1.0000	28.0	9.30%	5027.3	10.84%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.752e-01	1.0000	4.0	1.33%	904.1	1.95%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.726e-01	1.0000	15.0	4.98%	2878.1	6.21%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.684e-01	1.0000	19.0	6.31%	3572.4	7.70%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.608e-01	1.0000	6.0	1.99%	1304.1	2.81%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.565e-01	1.0000	11.0	3.65%	2217.4	4.78%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.561e-01	1.0000	1.0	0.33%	297.4	0.64%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.550e-01	1.0000	28.0	9.30%	5125.0	11.05%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.398e-01	1.0000	16.0	5.32%	3135.1	6.76%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-1.367e-01	1.0000	18.0	5.98%	3490.3	7.53%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-1.347e-01	1.0000	1.0	0.33%	318.5	0.69%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.232e-01	1.0000	2.0	0.66%	568.3	1.23%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.230e-01	1.0000	1.0	0.33%	331.6	0.72%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.213e-01	1.0000	1.0	0.33%	333.8	0.72%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.172e-01	1.0000	1.0	0.33%	338.6	0.73%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.164e-01	1.0000	1.0	0.33%	339.0	0.73%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.080e-01	1.0000	32.0	10.63%	5976.9	12.89%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.077e-01	1.0000	34.0	11.30%	6312.5	13.61%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.076e-01	1.0000	5.0	1.66%	1218.0	2.63%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.064e-01	1.0000	6.0	1.99%	1416.2	3.05%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-9.948e-02	1.0000	8.0	2.66%	1816.1	3.92%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-9.594e-02	1.0000	1.0	0.33%	367.6	0.79%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-9.352e-02	1.0000	9.0	2.99%	2022.1	4.36%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-9.215e-02	1.0000	62.0	20.60%	11001.6	23.72%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.139e-02	1.0000	16.0	5.32%	3300.7	7.12%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-8.833e-02	1.0000	5.0	1.66%	1267.7	2.73%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.550e-02	1.0000	22.0	7.31%	4379.1	9.44%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.288e-02	1.0000	6.0	1.99%	1482.0	3.20%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.894e-02	1.0000	34.0	11.30%	6467.7	13.95%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-7.562e-02	1.0000	5.0	1.66%	1305.1	2.81%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-7.153e-02	1.0000	1.0	0.33%	410.5	0.89%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.105e-02	1.0000	1.0	0.33%	411.2	0.89%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.105e-02	1.0000	1.0	0.33%	411.2	0.89%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-7.012e-02	1.0000	21.0	6.98%	4287.0	9.24%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-6.874e-02	1.0000	21.0	6.98%	4294.6	9.26%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.545e-02	1.0000	18.0	5.98%	3782.5	8.16%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-6.436e-02	1.0000	5.0	1.66%	1345.0	2.90%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.277e-02	1.0000	11.0	3.65%	2520.5	5.44%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-6.240e-02	1.0000	18.0	5.98%	3800.5	8.20%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-6.219e-02	1.0000	21.0	6.98%	4334.7	9.35%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-6.172e-02	1.0000	6.0	1.99%	1558.1	3.36%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.602e-02	1.0000	22.0	7.31%	4552.5	9.82%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-5.498e-02	1.0000	9.0	2.99%	2180.2	4.70%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-5.449e-02	1.0000	22.0	7.31%	4563.5	9.84%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.172e-02	1.0000	1.0	0.33%	458.8	0.99%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.014e-02	1.0000	11.0	3.65%	2590.5	5.59%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-4.616e-02	1.0000	8.0	2.66%	2034.3	4.39%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-4.613e-02	1.0000	14.0	4.65%	3179.4	6.86%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.599e-02	1.0000	12.0	3.99%	2806.3	6.05%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-4.565e-02	1.0000	8.0	2.66%	2037.9	4.39%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.443e-02	1.0000	2.0	0.66%	752.9	1.62%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-4.396e-02	1.0000	17.0	5.65%	3748.0	8.08%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.062e-02	1.0000	1.0	0.33%	494.6	1.07%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-3.958e-02	1.0000	28.0	9.30%	5747.7	12.39%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.899e-02	1.0000	25.0	8.31%	5226.5	11.27%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-3.821e-02	1.0000	6.0	1.99%	1678.8	3.62%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.674e-02	1.0000	4.0	1.33%	1258.1	2.71%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-3.673e-02	1.0000	8.0	2.66%	2096.0	4.52%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-3.596e-02	1.0000	16.0	5.32%	3633.0	7.83%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-3.419e-02	1.0000	25.0	8.31%	5278.4	11.38%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.309e-02	1.0000	8.0	2.66%	2124.9	4.58%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-3.025e-02	1.0000	6.0	1.99%	1735.6	3.74%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-2.453e-02	1.0000	13.0	4.32%	3191.4	6.88%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.366e-02	1.0000	1.0	0.33%	575.9	1.24%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.273e-02	1.0000	13.0	4.32%	3214.7	6.93%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.960e-02	1.0000	11.0	3.65%	2867.1	6.18%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.728e-02	1.0000	8.0	2.66%	2293.7	4.95%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.709e-02	1.0000	1.0	0.33%	624.5	1.35%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.643e-02	1.0000	18.0	5.98%	4266.0	9.20%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.543e-02	1.0000	9.0	2.99%	2529.2	5.45%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.461e-02	1.0000	3.0	1.00%	1210.8	2.61%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.371e-02	1.0000	5.0	1.66%	1699.0	3.66%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.210e-02	1.0000	10.0	3.32%	2798.1	6.03%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.209e-02	1.0000	22.0	7.31%	5113.6	11.03%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-9.647e-03	1.0000	42.0	13.95%	8767.2	18.91%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.682e-03	1.0000	8.0	2.66%	2464.8	5.32%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-8.464e-03	1.0000	1.0	0.33%	730.6	1.58%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-6.325e-03	1.0000	1.0	0.33%	774.2	1.67%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-5.793e-03	1.0000	11.0	3.65%	3197.8	6.90%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-5.588e-03	1.0000	2.0	0.66%	1114.0	2.40%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.720e-03	1.0000	10.0	3.32%	3040.2	6.56%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.303e-03	1.0000	5.0	1.66%	2000.0	4.31%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-2.240e-03	1.0000	11.0	3.65%	3438.0	7.41%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.846e-03	1.0000	15.0	4.98%	4319.0	9.31%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.680e-03	1.0000	20.0	6.64%	5343.6	11.52%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.339e-03	1.0000	25.0	8.31%	6375.9	13.75%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-3.860e-04	1.0000	25.0	8.31%	6734.9	14.52%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-3.750e-04	1.0000	59.0	19.60%	12919.3	27.86%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-7.000e-06	1.0000	78.0	25.91%	17427.0	37.58%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	233.7	0.50%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	304.8	0.66%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	65.3	0.14%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	10.5	0.02%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	182.5	0.39%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	0.000e+00	1.0000	0.0	0.00%	557.7	1.20%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	0.000e+00	1.0000	0.0	0.00%	259.1	0.56%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	419.1	0.90%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	223.1	0.48%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	159.1	0.34%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	177.2	0.38%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	43.0	0.09%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	139.8	0.30%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	361.7	0.78%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	19.5	0.04%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	358.3	0.77%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	0.000e+00	1.0000	0.0	0.00%	1077.1	2.32%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	0.000e+00	1.0000	0.0	0.00%	193.6	0.42%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	0.0	0.00%	1209.2	2.61%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	5.7	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	14.3	0.03%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	94.3	0.20%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	16.7	0.04%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	0.000e+00	1.0000	0.0	0.00%	93.2	0.20%