Information for 13-AGGCAATTAAAC (Motif 16)

C G T A C A T G C T A G G T A C G C T A G T C A C G A T A C G T C T G A G T C A G T C A T A G C
Reverse Opposite:
A T C G C A G T A C G T A G C T T C G A C G T A A C G T C G A T C A T G A G T C G A T C A C G T
p-value:1e-12
log p-value:-2.863e+01
Information Content per bp:1.742
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif116.2
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets96.6 +/- 51.6bp
Average Position of motif in Background108.4 +/- 68.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AGGCAATTAAAC---
ACAAGCAATTAATGAAT
 A C G T A C G T C G T A C A T G C T A G G T A C G C T A G T C A C G A T A C G T C T G A G T C A G T C A T A G C A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AGGCAATTAAAC---
ACAAGCAATTAATGAAT
 A C G T A C G T C G T A C A T G C T A G G T A C G C T A G T C A C G A T A C G T C T G A G T C A G T C A T A G C A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:AGGCAATTAAAC
-RGCAATNAAA-
 C G T A C A T G C T A G G T A C G C T A G T C A C G A T A C G T C T G A G T C A G T C A T A G C
A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T

Hmx2/MA0897.1/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--AGGCAATTAAAC---
ACAAGCAATTAAAGAAT
 A C G T A C G T C G T A C A T G C T A G G T A C G C T A G T C A C G A T A C G T C T G A G T C A G T C A T A G C A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:5
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--AGGCAATTAAAC---
ACAAGCAATTAAAGAAT
 A C G T A C G T C G T A C A T G C T A G G T A C G C T A G T C A C G A T A C G T C T G A G T C A G T C A T A G C A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.76
Offset:1
Orientation:forward strand
Alignment:AGGCAATTAAAC
-NGCAATTAAA-
 C G T A C A T G C T A G G T A C G C T A G T C A C G A T A C G T C T G A G T C A G T C A T A G C
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:7
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AGGCAATTAAAC---
ACAAGCAATTAAAGAAT
 A C G T A C G T C G T A C A T G C T A G G T A C G C T A G T C A C G A T A C G T C T G A G T C A G T C A T A G C A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:8
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AGGCAATTAAAC---
ACAAGCAATTAAAGAAT
 A C G T A C G T C G T A C A T G C T A G G T A C G C T A G T C A C G A T A C G T C T G A G T C A G T C A T A G C A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

HOXD9/MA0913.2/Jaspar

Match Rank:9
Score:0.74
Offset:2
Orientation:forward strand
Alignment:AGGCAATTAAAC
--GCAATAAAAC
 C G T A C A T G C T A G G T A C G C T A G T C A C G A T A C G T C T G A G T C A G T C A T A G C
A C G T A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGGCAATTAAAC
HDGYAATGAAAN
 C G T A C A T G C T A G G T A C G C T A G T C A C G A T A C G T C T G A G T C A G T C A T A G C
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A