Information for 2-TAATTAGC (Motif 2)

G A C T T G C A C G T A G C A T A C G T T C G A T A C G T G A C
Reverse Opposite:
A C T G A T G C A G C T T G C A C G T A G C A T A C G T C T G A
p-value:1e-29
log p-value:-6.790e+01
Information Content per bp:1.616
Number of Target Sequences with motif279.0
Percentage of Target Sequences with motif25.48%
Number of Background Sequences with motif5765.0
Percentage of Background Sequences with motif12.72%
Average Position of motif in Targets100.2 +/- 57.6bp
Average Position of motif in Background99.1 +/- 66.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:TAATTAGC
TAATTAGN
 G A C T T G C A C G T A G C A T A C G T T C G A T A C G T G A C
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C

LHX9/MA0701.2/Jaspar

Match Rank:2
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGC
NTAATTAG-
 A C G T G A C T T G C A C G T A G C A T A C G T T C G A T A C G T G A C
A G C T A G C T G T C A C G T A A C G T C A G T C T G A T C A G A C G T

VSX2/MA0726.1/Jaspar

Match Rank:3
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGC
NTAATTAG-
 A C G T G A C T T G C A C G T A G C A T A C G T T C G A T A C G T G A C
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T

PRRX2/MA0075.3/Jaspar

Match Rank:4
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGC
NTAATTAG-
 A C G T G A C T T G C A C G T A G C A T A C G T T C G A T A C G T G A C
G A C T A G C T C G T A C G T A A C G T A C G T T C G A T C A G A C G T

VSX1/MA0725.1/Jaspar

Match Rank:5
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGC
NTAATTAG-
 A C G T G A C T T G C A C G T A G C A T A C G T T C G A T A C G T G A C
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T

LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer

Match Rank:6
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGC-
CTAATTAGCN
 A C G T G A C T T G C A C G T A G C A T A C G T T C G A T A C G T G A C A C G T
A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G A T G C T A C G

En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer

Match Rank:7
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGC-
STAATTAGHN
 A C G T G A C T T G C A C G T A G C A T A C G T T C G A T A C G T G A C A C G T
A T G C G A C T T G C A T C G A G C A T A C G T C T G A T A C G G A T C A G T C

NOTO/MA0710.1/Jaspar

Match Rank:8
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAGC
NNTAATTAGN
 A C G T A C G T G A C T T G C A C G T A G C A T A C G T T C G A T A C G T G A C
T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C

EMX2/MA0886.1/Jaspar

Match Rank:9
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--TAATTAGC
GCTAATTAGC
 A C G T A C G T G A C T T G C A C G T A G C A T A C G T T C G A T A C G T G A C
T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C

DRGX/MA1481.1/Jaspar

Match Rank:10
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGC
NTAATTAG-
 A C G T G A C T T G C A C G T A G C A T A C G T T C G A T A C G T G A C
A T C G G A C T T C G A C G T A A C G T A G C T T C G A T C A G A C G T