Information for 17-TTGCTAAGCAAC (Motif 21)

A C G T A C G T A C T G A G T C A C G T G T C A T C G A A C T G A G T C C G T A C T G A A G T C
Reverse Opposite:
C T A G A G C T A C G T A C T G A G T C A G C T C A G T C G T A A C T G A G T C C G T A C G T A
p-value:1e-10
log p-value:-2.500e+01
Information Content per bp:1.890
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets91.6 +/- 54.1bp
Average Position of motif in Background83.4 +/- 61.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TTGCTAAGCAAC-
KGTTGCTAGGMAACA
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T G T C A T C G A A C T G A G T C C G T A C T G A A G T C A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TTGCTAAGCAAC
NCCGTTGCTANGNGN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T G T C A T C G A A C T G A G T C C G T A C T G A A G T C
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.70
Offset:-8
Orientation:reverse strand
Alignment:--------TTGCTAAGCAAC---
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T G T C A T C G A A C T G A G T C C G T A C T G A A G T C A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTGCTAAGCAAC
NNCGTTGCTATGGNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T G T C A T C G A A C T G A G T C C G T A C T G A A G T C
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTGCTAAGCAAC
CTGTTGCTAGGS---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T G T C A T C G A A C T G A G T C C G T A C T G A A G T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T

RFX1/MA0509.2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TTGCTAAGCAAC
CTGTTGCTATGGCA-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T G T C A T C G A A C T G A G T C C G T A C T G A A G T C
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A A C G T

RFX3/MA0798.2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TTGCTAAGCAAC
CGGTTGCTATGGCA-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T G T C A T C G A A C T G A G T C C G T A C T G A A G T C
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A A C G T

HLF/MA0043.3/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTGCTAAGCAAC--
TTGTTATGCAACAA
 A C G T A C G T A C T G A G T C A C G T G T C A T C G A A C T G A G T C C G T A C T G A A G T C A C G T A C G T
C G A T C A G T T C A G G C A T C A G T C T G A A G C T C T A G G A T C G T C A C T G A A G T C G T C A C G T A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTGCTAAGCAAC-
CATTGTTATGCAAAT
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T G T C A T C G A A C T G A G T C C G T A C T G A A G T C A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

NFIC/MA0161.2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TTGCTAAGCAAC
-TACTTGGCAGA
 A C G T A C G T A C T G A G T C A C G T G T C A T C G A A C T G A G T C C G T A C T G A A G T C
A C G T G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A