Information for 21-CTCATTATAGGC (Motif 25)

A G T C A C G T A G T C C G T A A G C T A C G T C G T A A C G T C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T G T C A C G A T C G T A C T G A A C G T A C T G C G T A C T A G
p-value:1e-10
log p-value:-2.343e+01
Information Content per bp:1.906
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets95.6 +/- 62.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTCATTATAGGC
NNCTCATTAT----
 A C G T A C G T A G T C A C G T A G T C C G T A A G C T A C G T C G T A A C G T C G T A A C T G A C T G A G T C
G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T A C G T A C G T A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CTCATTATAGGC
GCAACCTCATTATNNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C C G T A A G C T A C G T C G T A A C G T C G T A A C T G A C T G A G T C
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

POU6F2/MA0793.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTCATTATAGGC
AGCTCATTAT----
 A C G T A C G T A G T C A C G T A G T C C G T A A G C T A C G T C G T A A C G T C G T A A C T G A C T G A G T C
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T A C G T A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CTCATTATAGGC
NNNACCTCATTATCNTN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C C G T A A G C T A C G T C G T A A C G T C G T A A C T G A C T G A G T C
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

NKX6-3/MA1530.1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTCATTATAGGC
CTCATTAAA---
 A G T C A C G T A G T C C G T A A G C T A C G T C G T A A C G T C G T A A C T G A C T G A G T C
T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T A C G T A C G T

HOXC4/MA1504.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTCATTATAGGC
GTCATTAA----
 A G T C A C G T A G T C C G T A A G C T A C G T C G T A A C G T C G T A A C T G A C T G A G T C
T C A G G A C T G T A C C T G A A C G T A C G T C T G A T C G A A C G T A C G T A C G T A C G T

HOXD4/MA1507.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTCATTATAGGC
ATCATTAG----
 A G T C A C G T A G T C C G T A A G C T A C G T C G T A A C G T C G T A A C T G A C T G A G T C
T C G A A G C T G T A C C T G A A C G T A C G T C T G A C T A G A C G T A C G T A C G T A C G T

HOXB4/MA1499.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTCATTATAGGC
ATCATTAG----
 A G T C A C G T A G T C C G T A A G C T A C G T C G T A A C G T C G T A A C T G A C T G A G T C
T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G A C G T A C G T A C G T A C G T

HOXA2/MA0900.2/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTCATTATAGGC
GTAATTAG----
 A G T C A C G T A G T C C G T A A G C T A C G T C G T A A C G T C G T A A C T G A C T G A G T C
T A C G A G C T T G C A C G T A A C G T A C G T C T G A T A C G A C G T A C G T A C G T A C G T

GSX1/MA0892.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTCATTATAGGC
CCTAATTAAA---
 A C G T A G T C A C G T A G T C C G T A A G C T A C G T C G T A A C G T C G T A A C T G A C T G A G T C
G T A C A T G C G A C T G T C A T C G A G C A T G A C T C G T A T C G A G C T A A C G T A C G T A C G T