Information for 9-GCTCGTTA (Motif 29)

T A C G G A T C G A C T A T G C A C T G A C G T A C G T G T C A
Reverse Opposite:
A C G T C G T A C G T A G T A C A T C G C T G A C T A G A T G C
p-value:1e-8
log p-value:-2.006e+01
Information Content per bp:1.813
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif4.93%
Number of Background Sequences with motif892.4
Percentage of Background Sequences with motif1.97%
Average Position of motif in Targets82.0 +/- 52.9bp
Average Position of motif in Background101.1 +/- 66.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA9/MA0594.2/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GCTCGTTA---
-GTCGTAAACG
 T A C G G A T C G A C T A T G C A C T G A C G T A C G T G T C A A C G T A C G T A C G T
A C G T T C A G G A C T G T A C T C A G A G C T G C T A G C T A G C T A G A T C T A C G

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GCTCGTTA-
NNCTCATTAT
 A C G T T A C G G A T C G A C T A T G C A C T G A C G T A C G T G T C A A C G T
G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T

POU6F2/MA0793.1/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GCTCGTTA-
AGCTCATTAT
 A C G T T A C G G A T C G A C T A T G C A C T G A C G T A C G T G T C A A C G T
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCTCGTTA--
ACTAGTTAAC
 T A C G G A T C G A C T A T G C A C T G A C G T A C G T G T C A A C G T A C G T
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0151.1_Pou6f1_1/Jaspar

Match Rank:5
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GCTCGTTA-----
NNNACCTCATTATCNTN
 A C G T A C G T A C G T A C G T T A C G G A T C G A C T A T G C A C T G A C G T A C G T G T C A A C G T A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GCTCGTTA-----
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T T A C G G A T C G A C T A T G C A C T G A C G T A C G T G T C A A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HOXC13/MA0907.1/Jaspar

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCTCGTTA---
GCTCGTAAAAA
 T A C G G A T C G A C T A T G C A C T G A C G T A C G T G T C A A C G T A C G T A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0152.1_Pou6f1_2/Jaspar

Match Rank:8
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GCTCGTTA-----
GCAACCTCATTATNNNN
 A C G T A C G T A C G T A C G T T A C G G A T C G A C T A T G C A C T G A C G T A C G T G T C A A C G T A C G T A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

PH0168.1_Hnf1b/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GCTCGTTA------
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T T A C G G A T C G A C T A T G C A C T G A C G T A C G T G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Hoxa11/MA0911.1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTCGTTA----
GGTCGTAAAATT
 T A C G G A T C G A C T A T G C A C T G A C G T A C G T G T C A A C G T A C G T A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T