Information for 5-CGCCAATCAT (Motif 6)

G T A C T C A G T A G C G T A C G C T A G T C A A C G T A G T C G C T A A G C T
Reverse Opposite:
C T G A C G A T T C A G T G C A C A G T C G A T A C T G A T C G A G T C C A T G
p-value:1e-14
log p-value:-3.287e+01
Information Content per bp:1.651
Number of Target Sequences with motif80.0
Percentage of Target Sequences with motif7.31%
Number of Background Sequences with motif1228.4
Percentage of Background Sequences with motif2.71%
Average Position of motif in Targets89.7 +/- 51.6bp
Average Position of motif in Background98.2 +/- 65.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYC/MA1644.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGCCAATCAT-
AGCCAATCAGA
 G T A C T C A G T A G C G T A C G C T A G T C A A C G T A G T C G C T A A G C T A C G T
T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

NFYA/MA0060.3/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CGCCAATCAT-
AACCAATCAGA
 G T A C T C A G T A G C G T A C G C T A G T C A A C G T A G T C G C T A A G C T A C G T
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGCCAATCAT
ACTAGCCAATCA-
 A C G T A C G T A C G T G T A C T C A G T A G C G T A C G C T A G T C A A C G T A G T C G C T A A G C T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CGCCAATCAT
--CCAATCAA
 G T A C T C A G T A G C G T A C G C T A G T C A A C G T A G T C G C T A A G C T
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAATCAT
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C T C A G T A G C G T A C G C T A G T C A A C G T A G T C G C T A A G C T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CGCCAATCAT
SCTGTCAVTCAV
 A C G T A C G T G T A C T C A G T A G C G T A C G C T A G T C A A C G T A G T C G C T A A G C T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGCCAATCAT
CGTGCCAAG---
 A C G T A C G T G T A C T C A G T A G C G T A C G C T A G T C A A C G T A G T C G C T A A G C T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAATCAT
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C T C A G T A G C G T A C G C T A G T C A A C G T A G T C G C T A A G C T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

PB0113.1_E2F3_2/Jaspar

Match Rank:9
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------CGCCAATCAT
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C T C A G T A G C G T A C G C T A G T C A A C G T A G T C G C T A A G C T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

YY2/MA0748.2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CGCCAATCAT
CGCCGCCATNN--
 A C G T A C G T A C G T G T A C T C A G T A G C G T A C G C T A G T C A A C G T A G T C G C T A A G C T
A T G C C A T G A T G C T A G C C T A G A G T C A T G C T C G A A G C T A T G C C A G T A C G T A C G T