Information for 7-CAGSCTGBBW (Motif 8)

T G A C G T C A C T A G A T C G A G T C A C G T C A T G A G C T A T G C C G T A
Reverse Opposite:
G C A T T A C G T C G A G T A C C G T A A C T G T A G C G A T C A C G T A C T G
p-value:1e-13
log p-value:-3.219e+01
Information Content per bp:1.659
Number of Target Sequences with motif193.0
Percentage of Target Sequences with motif17.63%
Number of Background Sequences with motif4535.7
Percentage of Background Sequences with motif10.01%
Average Position of motif in Targets97.3 +/- 56.9bp
Average Position of motif in Background99.1 +/- 58.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:forward strand
Alignment:CAGSCTGBBW
---GCTGTG-
 T G A C G T C A C T A G A T C G A G T C A C G T C A T G A G C T A T G C C G T A
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAGSCTGBBW
TWGTCTGV--
 T G A C G T C A C T A G A T C G A G T C A C G T C A T G A G C T A T G C C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGSCTGBBW
CTGTCTGG--
 T G A C G T C A C T A G A T C G A G T C A C G T C A T G A G C T A T G C C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGSCTGBBW
CCTGCTGAGH
 T G A C G T C A C T A G A T C G A G T C A C G T C A T G A G C T A T G C C G T A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAGSCTGBBW--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T T G A C G T C A C T A G A T C G A G T C A C G T C A T G A G C T A T G C C G T A A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CAGSCTGBBW--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T T G A C G T C A C T A G A T C G A G T C A C G T C A T G A G C T A T G C C G T A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAGSCTGBBW
--NGCTN---
 T G A C G T C A C T A G A T C G A G T C A C G T C A T G A G C T A T G C C G T A
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGSCTGBBW
VBSYGTCTGG--
 A C G T A C G T T G A C G T C A C T A G A T C G A G T C A C G T C A T G A G C T A T G C C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CAGSCTGBBW--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T T G A C G T C A C T A G A T C G A G T C A C G T C A T G A G C T A T G C C G T A A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

POL002.1_INR/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAGSCTGBBW
NNNANTGA--
 T G A C G T C A C T A G A T C G A G T C A C G T C A T G A G C T A T G C C G T A
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T