Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1095)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45319)	% of Background Sequences with Motif
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-18	-4.285e+01	0.0000	266.0	24.29%	6390.0	14.10%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-18	-4.236e+01	0.0000	208.0	19.00%	4554.0	10.05%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-17	-4.052e+01	0.0000	160.0	14.61%	3179.3	7.02%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-17	-4.025e+01	0.0000	314.0	28.68%	8150.6	17.99%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-17	-4.003e+01	0.0000	247.0	22.56%	5903.6	13.03%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-15	-3.642e+01	0.0000	294.0	26.85%	7678.8	16.94%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-15	-3.607e+01	0.0000	198.0	18.08%	4513.8	9.96%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-15	-3.501e+01	0.0000	210.0	19.18%	4945.2	10.91%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-14	-3.431e+01	0.0000	253.0	23.11%	6399.5	14.12%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-14	-3.273e+01	0.0000	299.0	27.31%	8076.5	17.82%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-13	-3.078e+01	0.0000	231.0	21.10%	5856.1	12.92%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-13	-3.029e+01	0.0000	226.0	20.64%	5716.2	12.61%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-12	-2.978e+01	0.0000	275.0	25.11%	7423.3	16.38%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-12	-2.934e+01	0.0000	133.0	12.15%	2800.8	6.18%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-12	-2.915e+01	0.0000	248.0	22.65%	6528.6	14.41%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-12	-2.860e+01	0.0000	268.0	24.47%	7255.1	16.01%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-12	-2.839e+01	0.0000	149.0	13.61%	3326.2	7.34%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-10	-2.513e+01	0.0000	93.0	8.49%	1793.6	3.96%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-10	-2.410e+01	0.0000	282.0	25.75%	8063.2	17.79%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-8	-2.011e+01	0.0000	359.0	32.79%	11242.8	24.81%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-8	-1.861e+01	0.0000	407.0	37.17%	13229.9	29.19%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-7	-1.841e+01	0.0000	10.0	0.91%	32.4	0.07%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-7	-1.808e+01	0.0000	20.0	1.83%	170.8	0.38%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-7	-1.799e+01	0.0000	69.0	6.30%	1363.0	3.01%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-7	-1.760e+01	0.0000	66.0	6.03%	1292.9	2.85%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-7	-1.672e+01	0.0000	309.0	28.22%	9687.1	21.38%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-7	-1.667e+01	0.0000	214.0	19.54%	6212.6	13.71%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-6	-1.409e+01	0.0000	521.0	47.58%	18286.4	40.35%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-6	-1.398e+01	0.0000	26.0	2.37%	350.9	0.77%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-5	-1.359e+01	0.0000	221.0	20.18%	6735.7	14.86%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-5	-1.334e+01	0.0000	36.0	3.29%	609.4	1.34%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-5	-1.274e+01	0.0000	44.0	4.02%	843.2	1.86%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-5	-1.263e+01	0.0000	23.0	2.10%	308.0	0.68%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-5	-1.243e+01	0.0001	64.0	5.84%	1441.8	3.18%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-5	-1.220e+01	0.0001	80.0	7.31%	1953.1	4.31%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-5	-1.217e+01	0.0001	137.0	12.51%	3863.9	8.53%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-5	-1.197e+01	0.0001	23.0	2.10%	321.9	0.71%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-5	-1.177e+01	0.0001	206.0	18.81%	6365.8	14.05%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-5	-1.164e+01	0.0001	360.0	32.88%	12217.5	26.96%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-4	-1.123e+01	0.0001	112.0	10.23%	3074.4	6.78%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-4	-1.060e+01	0.0003	57.0	5.21%	1313.5	2.90%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-4	-1.017e+01	0.0004	208.0	19.00%	6608.6	14.58%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-4	-9.991e+00	0.0005	236.0	21.55%	7675.5	16.94%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-4	-9.587e+00	0.0007	223.0	20.37%	7235.5	15.97%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-8.972e+00	0.0012	197.0	17.99%	6336.5	13.98%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-8.865e+00	0.0014	88.0	8.04%	2430.5	5.36%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-3	-8.738e+00	0.0015	40.0	3.65%	881.2	1.94%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-3	-8.558e+00	0.0018	356.0	32.51%	12505.3	27.60%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-3	-8.501e+00	0.0018	23.0	2.10%	405.5	0.89%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-3	-8.331e+00	0.0021	66.0	6.03%	1728.5	3.81%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-3	-7.949e+00	0.0030	21.0	1.92%	368.3	0.81%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-3	-7.624e+00	0.0041	50.0	4.57%	1249.9	2.76%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-7.207e+00	0.0062	544.0	49.68%	20323.1	44.85%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-6.762e+00	0.0094	160.0	14.61%	5226.8	11.53%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-2	-6.722e+00	0.0096	277.0	25.30%	9707.6	21.42%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-6.720e+00	0.0096	355.0	32.42%	12778.3	28.20%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-6.662e+00	0.0099	103.0	9.41%	3146.2	6.94%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-6.453e+00	0.0120	92.0	8.40%	2773.1	6.12%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-6.244e+00	0.0145	33.0	3.01%	784.4	1.73%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.991e+00	0.0183	99.0	9.04%	3071.8	6.78%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-2	-5.744e+00	0.0231	239.0	21.83%	8393.7	18.52%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-2	-5.663e+00	0.0247	112.0	10.23%	3582.9	7.91%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-2	-5.657e+00	0.0247	20.0	1.83%	416.7	0.92%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-2	-5.646e+00	0.0247	27.0	2.47%	627.9	1.39%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-2	-5.572e+00	0.0257	107.0	9.77%	3409.8	7.52%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-2	-5.502e+00	0.0272	20.0	1.83%	422.0	0.93%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-2	-5.435e+00	0.0286	140.0	12.79%	4652.7	10.27%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-5.401e+00	0.0292	78.0	7.12%	2376.5	5.24%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e-2	-5.313e+00	0.0314	157.0	14.34%	5311.6	11.72%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.286e+00	0.0318	23.0	2.10%	521.9	1.15%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-5.199e+00	0.0342	86.0	7.85%	2685.9	5.93%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-2	-5.137e+00	0.0359	97.0	8.86%	3093.7	6.83%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-2	-4.871e+00	0.0462	55.0	5.02%	1611.0	3.56%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-4.771e+00	0.0504	80.0	7.31%	2514.2	5.55%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-4.613e+00	0.0582	45.0	4.11%	1285.5	2.84%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-1	-4.592e+00	0.0586	75.0	6.85%	2352.2	5.19%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-4.568e+00	0.0593	94.0	8.58%	3051.0	6.73%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-4.491e+00	0.0633	118.0	10.78%	3957.1	8.73%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-4.414e+00	0.0675	51.0	4.66%	1511.6	3.34%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-4.408e+00	0.0675	199.0	18.17%	7077.0	15.62%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-4.360e+00	0.0694	31.0	2.83%	828.6	1.83%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-4.243e+00	0.0771	12.0	1.10%	237.3	0.52%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-1	-4.215e+00	0.0783	111.0	10.14%	3733.2	8.24%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-4.010e+00	0.0950	138.0	12.60%	4792.0	10.57%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-4.003e+00	0.0950	25.0	2.28%	652.1	1.44%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-3.996e+00	0.0950	77.0	7.03%	2494.0	5.50%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-3.948e+00	0.0976	313.0	28.58%	11683.7	25.78%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-3.919e+00	0.0993	324.0	29.59%	12131.5	26.77%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-3.876e+00	0.1025	49.0	4.47%	1490.8	3.29%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.822e+00	0.1070	156.0	14.25%	5517.7	12.18%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-3.809e+00	0.1072	146.0	13.33%	5133.6	11.33%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-3.776e+00	0.1096	36.0	3.29%	1041.8	2.30%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.723e+00	0.1143	184.0	16.80%	6625.9	14.62%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-3.648e+00	0.1219	23.0	2.10%	608.8	1.34%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-1	-3.565e+00	0.1311	110.0	10.05%	3794.0	8.37%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-1	-3.540e+00	0.1329	150.0	13.70%	5337.7	11.78%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.497e+00	0.1374	49.0	4.47%	1528.1	3.37%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-3.434e+00	0.1448	82.0	7.49%	2754.1	6.08%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.428e+00	0.1448	119.0	10.87%	4161.2	9.18%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-3.400e+00	0.1468	70.0	6.39%	2310.6	5.10%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-3.393e+00	0.1468	153.0	13.97%	5482.6	12.10%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.392e+00	0.1468	60.0	5.48%	1941.8	4.28%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-3.327e+00	0.1534	154.0	14.06%	5534.3	12.21%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.244e+00	0.1651	36.0	3.29%	1087.8	2.40%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.238e+00	0.1651	114.0	10.41%	4002.5	8.83%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-3.206e+00	0.1682	224.0	20.46%	8316.3	18.35%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-3.156e+00	0.1751	139.0	12.69%	4984.2	11.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-3.135e+00	0.1771	4.0	0.37%	54.3	0.12%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-3.114e+00	0.1793	15.0	1.37%	377.5	0.83%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-3.093e+00	0.1814	101.0	9.22%	3528.3	7.79%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.998e+00	0.1978	49.0	4.47%	1583.3	3.49%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.925e+00	0.2107	127.0	11.60%	4563.8	10.07%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.881e+00	0.2184	33.0	3.01%	1014.5	2.24%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.814e+00	0.2314	87.0	7.95%	3039.0	6.71%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.783e+00	0.2367	13.0	1.19%	330.1	0.73%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-2.702e+00	0.2545	49.0	4.47%	1619.9	3.57%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.598e+00	0.2798	190.0	17.35%	7119.0	15.71%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.544e+00	0.2929	81.0	7.40%	2855.7	6.30%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-2.527e+00	0.2954	201.0	18.36%	7576.0	16.72%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.518e+00	0.2955	181.0	16.53%	6781.7	14.96%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-2.515e+00	0.2955	83.0	7.58%	2937.2	6.48%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-1	-2.489e+00	0.2994	5.0	0.46%	95.9	0.21%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.477e+00	0.3005	23.0	2.10%	694.4	1.53%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-2.463e+00	0.3022	14.0	1.28%	382.9	0.84%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.412e+00	0.3155	10.0	0.91%	252.6	0.56%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.408e+00	0.3155	11.0	1.00%	286.0	0.63%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-2.401e+00	0.3155	93.0	8.49%	3345.9	7.38%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.400e+00	0.3155	6.0	0.55%	127.4	0.28%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.336e+00	0.3299	57.0	5.21%	1971.6	4.35%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.311e+00	0.3358	12.0	1.10%	324.5	0.72%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.299e+00	0.3369	94.0	8.58%	3404.9	7.51%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.285e+00	0.3393	107.0	9.77%	3915.6	8.64%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.235e+00	0.3539	45.0	4.11%	1531.4	3.38%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-2.173e+00	0.3737	1.0	0.09%	5.7	0.01%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.153e+00	0.3786	16.0	1.46%	473.3	1.04%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.123e+00	0.3873	28.0	2.56%	910.3	2.01%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.100e+00	0.3934	96.0	8.77%	3524.4	7.78%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-2.093e+00	0.3934	79.0	7.21%	2861.9	6.32%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.082e+00	0.3945	81.0	7.40%	2941.9	6.49%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.076e+00	0.3945	12.0	1.10%	339.8	0.75%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.036e+00	0.4075	459.0	41.92%	18220.7	40.21%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.995e+00	0.4214	30.0	2.74%	999.4	2.21%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.973e+00	0.4280	75.0	6.85%	2729.3	6.02%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.954e+00	0.4328	100.0	9.13%	3714.5	8.20%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.938e+00	0.4371	9.0	0.82%	245.3	0.54%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.937e+00	0.4371	70.0	6.39%	2541.5	5.61%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-1.936e+00	0.4371	189.0	17.26%	7267.0	16.04%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.925e+00	0.4371	199.0	18.17%	7673.6	16.93%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-1.908e+00	0.4380	37.0	3.38%	1274.5	2.81%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.877e+00	0.4491	49.0	4.47%	1738.6	3.84%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.851e+00	0.4578	65.0	5.94%	2363.6	5.22%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.815e+00	0.4712	19.0	1.74%	611.2	1.35%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.809e+00	0.4712	34.0	3.11%	1174.5	2.59%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.801e+00	0.4720	95.0	8.68%	3553.3	7.84%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.800e+00	0.4720	147.0	13.42%	5624.4	12.41%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.789e+00	0.4720	10.0	0.91%	289.2	0.64%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.751e+00	0.4865	74.0	6.76%	2736.6	6.04%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.722e+00	0.4975	225.0	20.55%	8793.5	19.40%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.705e+00	0.5030	88.0	8.04%	3299.0	7.28%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.671e+00	0.5174	12.0	1.10%	369.2	0.81%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.665e+00	0.5174	31.0	2.83%	1080.9	2.39%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.661e+00	0.5174	13.0	1.19%	406.9	0.90%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.644e+00	0.5217	34.0	3.11%	1198.8	2.65%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.599e+00	0.5423	16.0	1.46%	523.0	1.15%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.578e+00	0.5506	97.0	8.86%	3689.2	8.14%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.572e+00	0.5506	22.0	2.01%	750.4	1.66%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.553e+00	0.5578	63.0	5.75%	2346.7	5.18%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.499e+00	0.5850	26.0	2.37%	912.7	2.01%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.492e+00	0.5857	20.0	1.83%	684.1	1.51%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.480e+00	0.5893	24.0	2.19%	838.3	1.85%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.454e+00	0.6013	93.0	8.49%	3563.2	7.86%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.436e+00	0.6082	44.0	4.02%	1622.7	3.58%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.429e+00	0.6093	26.0	2.37%	922.9	2.04%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.403e+00	0.6215	126.0	11.51%	4904.8	10.82%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.379e+00	0.6334	2.0	0.18%	40.8	0.09%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.379e+00	0.6334	143.0	13.06%	5599.0	12.36%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.366e+00	0.6341	77.0	7.03%	2947.8	6.50%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.363e+00	0.6341	72.0	6.58%	2748.2	6.06%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.363e+00	0.6341	85.0	7.76%	3268.4	7.21%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.352e+00	0.6341	18.0	1.64%	625.6	1.38%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.348e+00	0.6341	3.0	0.27%	74.0	0.16%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.346e+00	0.6341	231.0	21.10%	9188.8	20.28%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.324e+00	0.6396	5.0	0.46%	143.7	0.32%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.318e+00	0.6402	97.0	8.86%	3763.8	8.31%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.296e+00	0.6509	154.0	14.06%	6075.3	13.41%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.294e+00	0.6509	81.0	7.40%	3127.1	6.90%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.275e+00	0.6578	213.0	19.45%	8485.1	18.72%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.262e+00	0.6628	112.0	10.23%	4386.6	9.68%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.225e+00	0.6839	22.0	2.01%	797.1	1.76%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.205e+00	0.6938	82.0	7.49%	3193.6	7.05%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.181e+00	0.7073	15.0	1.37%	531.3	1.17%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.177e+00	0.7073	112.0	10.23%	4415.6	9.74%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.177e+00	0.7073	70.0	6.39%	2718.9	6.00%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.166e+00	0.7073	52.0	4.75%	1998.3	4.41%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.154e+00	0.7118	32.0	2.92%	1203.6	2.66%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.152e+00	0.7118	33.0	3.01%	1243.5	2.74%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.118e+00	0.7299	44.0	4.02%	1690.0	3.73%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.113e+00	0.7304	181.0	16.53%	7251.3	16.00%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.109e+00	0.7304	59.0	5.39%	2294.9	5.06%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.091e+00	0.7387	288.0	26.30%	11647.7	25.70%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.064e+00	0.7556	231.0	21.10%	9322.8	20.57%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.039e+00	0.7710	11.0	1.00%	393.5	0.87%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.011e+00	0.7883	20.0	1.83%	752.4	1.66%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.008e+00	0.7883	204.0	18.63%	8243.4	18.19%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.000e+00	0.7894	91.0	8.31%	3625.4	8.00%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-9.848e-01	0.7978	8.0	0.73%	282.1	0.62%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-9.843e-01	0.7978	47.0	4.29%	1843.8	4.07%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-9.816e-01	0.7978	24.0	2.19%	917.5	2.02%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-9.763e-01	0.7978	24.0	2.19%	918.7	2.03%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-9.757e-01	0.7978	7.0	0.64%	244.6	0.54%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-9.559e-01	0.8017	53.0	4.84%	2094.5	4.62%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-9.486e-01	0.8038	97.0	8.86%	3889.7	8.58%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-9.475e-01	0.8038	108.0	9.86%	4339.8	9.58%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-9.121e-01	0.8259	5.0	0.46%	172.3	0.38%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-8.919e-01	0.8388	20.0	1.83%	773.5	1.71%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-8.918e-01	0.8388	25.0	2.28%	975.6	2.15%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-8.892e-01	0.8388	35.0	3.20%	1381.1	3.05%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-8.889e-01	0.8388	5.0	0.46%	174.8	0.39%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-8.745e-01	0.8388	2.0	0.18%	59.4	0.13%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.722e-01	0.8388	30.0	2.74%	1182.3	2.61%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-8.604e-01	0.8422	18.0	1.64%	698.1	1.54%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-8.585e-01	0.8422	54.0	4.93%	2164.3	4.78%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.472e-01	0.8457	166.0	15.16%	6766.1	14.93%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-8.309e-01	0.8558	29.0	2.65%	1151.9	2.54%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-8.269e-01	0.8558	56.0	5.11%	2256.4	4.98%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.258e-01	0.8558	222.0	20.27%	9085.5	20.05%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.024e-01	0.8688	42.0	3.84%	1690.8	3.73%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-7.953e-01	0.8712	278.0	25.39%	11415.0	25.19%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-7.935e-01	0.8712	53.0	4.84%	2144.4	4.73%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-7.828e-01	0.8745	266.0	24.29%	10928.9	24.12%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.652e-01	0.8861	142.0	12.97%	5821.1	12.85%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-7.465e-01	0.8990	21.0	1.92%	843.7	1.86%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-7.200e-01	0.9191	197.0	17.99%	8119.7	17.92%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-7.143e-01	0.9205	118.0	10.78%	4857.3	10.72%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.136e-01	0.9205	5.0	0.46%	191.9	0.42%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-7.022e-01	0.9238	103.0	9.41%	4243.6	9.36%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-6.932e-01	0.9282	10.0	0.91%	400.8	0.88%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.778e-01	0.9387	9.0	0.82%	361.7	0.80%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.662e-01	0.9457	133.0	12.15%	5504.5	12.15%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-6.645e-01	0.9457	176.0	16.07%	7286.9	16.08%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-6.636e-01	0.9457	19.0	1.74%	779.7	1.72%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.614e-01	0.9457	106.0	9.68%	4388.5	9.68%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.604e-01	0.9457	16.0	1.46%	655.2	1.45%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-6.545e-01	0.9457	14.0	1.28%	573.5	1.27%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-6.491e-01	0.9457	151.0	13.79%	6260.8	13.82%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-6.434e-01	0.9457	236.0	21.55%	9786.1	21.59%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.428e-01	0.9457	27.0	2.47%	1117.7	2.47%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.409e-01	0.9457	36.0	3.29%	1492.0	3.29%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.327e-01	0.9457	189.0	17.26%	7846.8	17.32%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-6.028e-01	0.9632	91.0	8.31%	3796.8	8.38%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.953e-01	0.9666	132.0	12.05%	5505.6	12.15%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.842e-01	0.9735	76.0	6.94%	3181.5	7.02%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-5.557e-01	0.9977	167.0	15.25%	6987.5	15.42%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.522e-01	0.9977	12.0	1.10%	510.6	1.13%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.442e-01	1.0000	193.0	17.63%	8078.0	17.83%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-5.252e-01	1.0000	60.0	5.48%	2542.0	5.61%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.093e-01	1.0000	22.0	2.01%	946.2	2.09%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.884e-01	1.0000	5.0	0.46%	220.7	0.49%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.747e-01	1.0000	52.0	4.75%	2229.3	4.92%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-4.722e-01	1.0000	255.0	23.29%	10719.3	23.65%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.700e-01	1.0000	71.0	6.48%	3032.5	6.69%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-4.698e-01	1.0000	150.0	13.70%	6343.2	14.00%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-4.659e-01	1.0000	85.0	7.76%	3623.6	8.00%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.611e-01	1.0000	12.0	1.10%	531.8	1.17%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-4.580e-01	1.0000	101.0	9.22%	4300.5	9.49%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-4.565e-01	1.0000	2.0	0.18%	89.3	0.20%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.529e-01	1.0000	37.0	3.38%	1604.2	3.54%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.483e-01	1.0000	37.0	3.38%	1606.1	3.54%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-4.301e-01	1.0000	131.0	11.96%	5579.4	12.31%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.252e-01	1.0000	7.0	0.64%	320.2	0.71%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-4.242e-01	1.0000	39.0	3.56%	1702.8	3.76%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-4.220e-01	1.0000	48.0	4.38%	2086.8	4.60%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.204e-01	1.0000	41.0	3.74%	1789.0	3.95%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-4.199e-01	1.0000	2.0	0.18%	93.4	0.21%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.191e-01	1.0000	9.0	0.82%	410.7	0.91%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-4.159e-01	1.0000	89.0	8.13%	3824.3	8.44%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-4.149e-01	1.0000	9.0	0.82%	411.8	0.91%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-4.020e-01	1.0000	29.0	2.65%	1284.3	2.83%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.018e-01	1.0000	6.0	0.55%	281.0	0.62%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-4.010e-01	1.0000	24.0	2.19%	1069.9	2.36%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.004e-01	1.0000	8.0	0.73%	370.2	0.82%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-3.957e-01	1.0000	98.0	8.95%	4218.8	9.31%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.932e-01	1.0000	11.0	1.00%	505.3	1.12%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.898e-01	1.0000	20.0	1.83%	900.6	1.99%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.788e-01	1.0000	40.0	3.65%	1767.3	3.90%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-3.709e-01	1.0000	41.0	3.74%	1814.5	4.00%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.596e-01	1.0000	6.0	0.55%	289.4	0.64%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-3.553e-01	1.0000	180.0	16.44%	7703.5	17.00%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-3.552e-01	1.0000	6.0	0.55%	290.5	0.64%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.527e-01	1.0000	29.0	2.65%	1306.1	2.88%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.474e-01	1.0000	75.0	6.85%	3280.8	7.24%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.447e-01	1.0000	55.0	5.02%	2429.5	5.36%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-3.436e-01	1.0000	133.0	12.15%	5738.3	12.66%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.419e-01	1.0000	7.0	0.64%	339.8	0.75%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-3.379e-01	1.0000	51.0	4.66%	2262.7	4.99%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.307e-01	1.0000	235.0	21.46%	10036.7	22.15%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.205e-01	1.0000	15.0	1.37%	707.0	1.56%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.188e-01	1.0000	8.0	0.73%	391.6	0.86%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-3.160e-01	1.0000	47.0	4.29%	2104.4	4.64%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-3.152e-01	1.0000	186.0	16.99%	7999.9	17.65%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-3.145e-01	1.0000	2.0	0.18%	107.3	0.24%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.139e-01	1.0000	3.0	0.27%	157.5	0.35%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-3.085e-01	1.0000	78.0	7.12%	3438.5	7.59%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.020e-01	1.0000	6.0	0.55%	303.2	0.67%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.977e-01	1.0000	43.0	3.93%	1943.2	4.29%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.963e-01	1.0000	11.0	1.00%	535.4	1.18%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.920e-01	1.0000	23.0	2.10%	1073.1	2.37%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.919e-01	1.0000	93.0	8.49%	4092.6	9.03%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.882e-01	1.0000	20.0	1.83%	942.4	2.08%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.882e-01	1.0000	3.0	0.27%	162.5	0.36%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.879e-01	1.0000	48.0	4.38%	2166.5	4.78%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.869e-01	1.0000	7.0	0.64%	354.7	0.78%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.869e-01	1.0000	7.0	0.64%	354.7	0.78%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-2.824e-01	1.0000	115.0	10.50%	5037.9	11.12%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.811e-01	1.0000	43.0	3.93%	1954.1	4.31%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.763e-01	1.0000	23.0	2.10%	1081.3	2.39%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-2.727e-01	1.0000	21.0	1.92%	994.0	2.19%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.691e-01	1.0000	10.0	0.91%	500.0	1.10%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.688e-01	1.0000	15.0	1.37%	727.4	1.61%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.555e-01	1.0000	13.0	1.19%	642.0	1.42%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.537e-01	1.0000	11.0	1.00%	551.8	1.22%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.521e-01	1.0000	5.0	0.46%	270.0	0.60%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.483e-01	1.0000	36.0	3.29%	1671.7	3.69%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.459e-01	1.0000	1.0	0.09%	63.1	0.14%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.331e-01	1.0000	80.0	7.31%	3593.6	7.93%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.329e-01	1.0000	44.0	4.02%	2034.0	4.49%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.322e-01	1.0000	11.0	1.00%	560.8	1.24%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.260e-01	1.0000	70.0	6.39%	3169.8	6.99%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.223e-01	1.0000	41.0	3.74%	1910.5	4.22%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.168e-01	1.0000	6.0	0.55%	329.3	0.73%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-2.168e-01	1.0000	21.0	1.92%	1025.3	2.26%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.134e-01	1.0000	2.0	0.18%	126.6	0.28%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.087e-01	1.0000	102.0	9.32%	4566.7	10.08%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.055e-01	1.0000	28.0	2.56%	1347.7	2.97%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.010e-01	1.0000	44.0	4.02%	2060.1	4.55%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.008e-01	1.0000	2.0	0.18%	129.8	0.29%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.942e-01	1.0000	83.0	7.58%	3766.5	8.31%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.928e-01	1.0000	80.0	7.31%	3638.7	8.03%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.925e-01	1.0000	100.0	9.13%	4501.7	9.93%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.885e-01	1.0000	125.0	11.42%	5579.4	12.31%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.874e-01	1.0000	41.0	3.74%	1940.4	4.28%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.857e-01	1.0000	85.0	7.76%	3863.7	8.53%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.835e-01	1.0000	39.0	3.56%	1855.9	4.10%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.788e-01	1.0000	58.0	5.30%	2697.6	5.95%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.711e-01	1.0000	29.0	2.65%	1420.0	3.13%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.672e-01	1.0000	68.0	6.21%	3148.5	6.95%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.652e-01	1.0000	28.0	2.56%	1379.8	3.04%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.582e-01	1.0000	6.0	0.55%	353.6	0.78%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.566e-01	1.0000	61.0	5.57%	2856.0	6.30%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.560e-01	1.0000	1.0	0.09%	80.2	0.18%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.528e-01	1.0000	45.0	4.11%	2153.7	4.75%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.490e-01	1.0000	101.0	9.22%	4608.5	10.17%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.432e-01	1.0000	7.0	0.64%	411.4	0.91%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.415e-01	1.0000	51.0	4.66%	2433.9	5.37%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.386e-01	1.0000	86.0	7.85%	3974.1	8.77%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.373e-01	1.0000	68.0	6.21%	3189.4	7.04%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.287e-01	1.0000	53.0	4.84%	2539.9	5.60%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.228e-01	1.0000	33.0	3.01%	1649.0	3.64%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.121e-01	1.0000	10.0	0.91%	581.4	1.28%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.099e-01	1.0000	6.0	0.55%	380.2	0.84%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.092e-01	1.0000	2.0	0.18%	159.4	0.35%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.059e-01	1.0000	69.0	6.30%	3285.5	7.25%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.054e-01	1.0000	70.0	6.39%	3330.0	7.35%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.026e-01	1.0000	5.0	0.46%	332.4	0.73%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.026e-01	1.0000	5.0	0.46%	332.4	0.73%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.010e-01	1.0000	15.0	1.37%	835.7	1.84%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.008e-01	1.0000	45.0	4.11%	2223.7	4.91%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-9.387e-02	1.0000	57.0	5.21%	2774.8	6.12%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-9.385e-02	1.0000	48.0	4.38%	2370.6	5.23%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-9.130e-02	1.0000	3.0	0.27%	228.3	0.50%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-8.026e-02	1.0000	35.0	3.20%	1802.6	3.98%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.908e-02	1.0000	15.0	1.37%	860.6	1.90%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-7.422e-02	1.0000	101.0	9.22%	4768.9	10.52%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-7.019e-02	1.0000	69.0	6.30%	3363.3	7.42%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.637e-02	1.0000	25.0	2.28%	1360.8	3.00%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-5.757e-02	1.0000	55.0	5.02%	2767.9	6.11%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-5.646e-02	1.0000	96.0	8.77%	4605.6	10.16%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.620e-02	1.0000	5.0	0.46%	372.9	0.82%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-5.295e-02	1.0000	45.0	4.11%	2323.8	5.13%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.164e-02	1.0000	21.0	1.92%	1197.6	2.64%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-5.069e-02	1.0000	97.0	8.86%	4671.9	10.31%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-4.928e-02	1.0000	23.0	2.10%	1299.3	2.87%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.890e-02	1.0000	379.0	34.61%	16763.4	36.99%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.435e-02	1.0000	66.0	6.03%	3309.3	7.30%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-4.387e-02	1.0000	38.0	3.47%	2025.5	4.47%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-4.374e-02	1.0000	60.0	5.48%	3039.1	6.71%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-3.924e-02	1.0000	71.0	6.48%	3556.1	7.85%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.889e-02	1.0000	28.0	2.56%	1567.6	3.46%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.800e-02	1.0000	11.0	1.00%	725.4	1.60%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.783e-02	1.0000	67.0	6.12%	3381.6	7.46%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.315e-02	1.0000	61.0	5.57%	3129.6	6.91%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.303e-02	1.0000	24.0	2.19%	1392.1	3.07%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-3.283e-02	1.0000	18.0	1.64%	1096.3	2.42%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-3.179e-02	1.0000	22.0	2.01%	1298.4	2.87%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-3.138e-02	1.0000	113.0	10.32%	5476.9	12.09%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.991e-02	1.0000	44.0	4.02%	2358.4	5.20%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.820e-02	1.0000	41.0	3.74%	2225.9	4.91%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.337e-02	1.0000	21.0	1.92%	1280.8	2.83%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-2.277e-02	1.0000	7.0	0.64%	546.9	1.21%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.005e-02	1.0000	50.0	4.57%	2694.4	5.95%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.529e-02	1.0000	1.0	0.09%	173.5	0.38%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.438e-02	1.0000	13.0	1.19%	911.5	2.01%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.290e-02	1.0000	20.0	1.83%	1287.1	2.84%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.236e-02	1.0000	61.0	5.57%	3276.4	7.23%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.089e-02	1.0000	8.0	0.73%	654.6	1.44%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-9.432e-03	1.0000	52.0	4.75%	2889.5	6.38%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-9.258e-03	1.0000	8.0	0.73%	665.2	1.47%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.455e-03	1.0000	37.0	3.38%	2180.9	4.81%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-8.053e-03	1.0000	99.0	9.04%	5091.5	11.24%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-7.941e-03	1.0000	69.0	6.30%	3712.2	8.19%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.754e-03	1.0000	76.0	6.94%	4061.3	8.96%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-6.510e-03	1.0000	1.0	0.09%	208.9	0.46%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.174e-03	1.0000	271.0	24.75%	12718.1	28.06%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-3.538e-03	1.0000	72.0	6.58%	3964.1	8.75%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.469e-03	1.0000	38.0	3.47%	2327.5	5.14%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.798e-03	1.0000	26.0	2.37%	1739.6	3.84%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.774e-03	1.0000	2.0	0.18%	334.5	0.74%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-2.300e-03	1.0000	22.0	2.01%	1546.8	3.41%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-2.232e-03	1.0000	51.0	4.66%	3016.2	6.66%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.706e-03	1.0000	31.0	2.83%	2044.4	4.51%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.585e-03	1.0000	9.0	0.82%	841.3	1.86%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.523e-03	1.0000	29.0	2.65%	1951.5	4.31%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.820e-04	1.0000	5.0	0.46%	630.1	1.39%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-6.160e-04	1.0000	32.0	2.92%	2190.6	4.83%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.460e-04	1.0000	36.0	3.29%	2428.5	5.36%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-3.170e-04	1.0000	59.0	5.39%	3625.1	8.00%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-3.000e-06	1.0000	79.0	7.21%	5107.8	11.27%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.000e-06	1.0000	95.0	8.68%	6006.7	13.25%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-0.000e+00	1.0000	65.0	5.94%	4599.7	10.15%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-0.000e+00	1.0000	51.0	4.66%	3927.4	8.67%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	155.0	14.16%	9129.0	20.14%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-0.000e+00	1.0000	206.0	18.81%	11592.7	25.58%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	113.0	10.32%	7324.4	16.16%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-0.000e+00	1.0000	324.0	29.59%	17074.9	37.68%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-0.000e+00	1.0000	88.0	8.04%	6347.5	14.01%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	85.0	0.19%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	69.9	0.15%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	4.5	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	19.4	0.04%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	26.4	0.06%