PeakID (cmd=annotatePeaks.pl p0_ms_rb_mc_pc_satb2_chip_overlap.broadPeak mm10)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
chipseq_peak_3948	chr13	99284380	99284977	+	0	NA	Intergenic	Intergenic	60000	NM_026873	68927	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding
chipseq_peak_9865	chr4	69677225	69677933	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-723182	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding
chipseq_peak_4940	chr15	28594834	28596062	+	0	NA	Intergenic	Intergenic	391682	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
chipseq_peak_5793	chr16	55838456	55839717	+	0	NA	promoter-TSS (NM_001159395)	promoter-TSS (NM_001159395)	-445	NM_001159395	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding
chipseq_peak_7213	chr19	31000325	31000640	+	0	NA	intron (NM_011160, intron 3 of 17)	MER58B|DNA|hAT-Charlie	-69520	NR_033643	625995	Mm.454508	NR_033643		Gm6642	EG625995	ubiquitin-like 5 pseudogene	pseudo
chipseq_peak_9519	chr4	13408203	13409225	+	0	NA	Intergenic	Intergenic	-334588	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_11411	chr6	40438567	40439429	+	0	NA	Intergenic	Intergenic	-2865	NM_175528	243780	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding
chipseq_peak_120	chr1	24869662	24870615	+	0	NA	Intergenic	Intergenic	191220	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding
chipseq_peak_12853	chr8	52571193	52571651	+	0	NA	Intergenic	Intergenic	-940280	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding
chipseq_peak_13283	chr9	5603919	5604691	+	0	NA	Intergenic	Intergenic	258829	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding
chipseq_peak_13304	chr9	10279017	10279724	+	0	NA	intron (NM_001170787, intron 3 of 24)	intron (NM_001170787, intron 3 of 24)	384939	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_12178	chr7	64958556	64959413	+	0	NA	intron (NM_183087, intron 2 of 9)	intron (NM_183087, intron 2 of 9)	-85944	NM_023239	66647	Mm.19944	NM_023239		Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|mage-g1	necdin-like 2	protein-coding
chipseq_peak_7936	chr2	79056501	79056933	+	0	NA	Intergenic	Intergenic	187670	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chipseq_peak_2924	chr12	46090474	46090862	+	0	NA	Intergenic	Intergenic	728107	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
chipseq_peak_8319	chr2	149578215	149578649	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	173183	NM_021405	58214	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding
chipseq_peak_3743	chr13	80381197	80382697	+	0	NA	Intergenic	Intergenic	-501475	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding
chipseq_peak_5368	chr15	87547002	87547401	+	0	NA	intron (NM_001252310, intron 1 of 3)	intron (NM_001252310, intron 1 of 3)	2902	NM_001252310	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding
chipseq_peak_13692	chr9	77148586	77149204	+	0	NA	intron (NM_027150, intron 7 of 7)	intron (NM_027150, intron 7 of 7)	-103114	NM_012033	26944	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding
chipseq_peak_3220	chr12	81829236	81829772	+	0	NA	Intergenic	Intergenic	-30526	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnxl1	pecanex homolog (Drosophila)	protein-coding
chipseq_peak_10557	chr5	61221983	61223568	+	0	NA	Intergenic	Intergenic	-586068	NM_019468	14380	Mm.347430	NM_019468		G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding
chipseq_peak_11665	chr6	93996933	93997182	+	0	NA	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-83367	NM_001286788	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
chipseq_peak_3305	chr12	98458417	98459075	+	0	NA	intron (NM_001316666, intron 4 of 4)	intron (NM_001316666, intron 4 of 4)	115966	NM_001316666	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding
chipseq_peak_10889	chr5	111014261	111015422	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	10697	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_8337	chr2	157308151	157308796	+	0	NA	intron (NM_019642, intron 9 of 16)	intron (NM_019642, intron 9 of 16)	-28924	NM_001039557	629499	Mm.384235	NM_001039557	ENSMUSG00000074627	Mroh8	4922505G16Rik	maestro heat-like repeat family member 8	protein-coding
chipseq_peak_10876	chr5	107494367	107494783	+	0	NA	Intergenic	Intergenic	-3170	NM_001007574	231570	Mm.261891	NM_001007574	ENSMUSG00000044060	A830010M20Rik	AI849226|Kiaa1107|mKIAA1107	RIKEN cDNA A830010M20 gene	protein-coding
chipseq_peak_3424	chr13	10814381	10815253	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-454014	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding
chipseq_peak_11677	chr6	96000076	96000402	+	0	NA	Intergenic	Intergenic	-112915	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding
chipseq_peak_750	chr1	123628266	123628839	+	0	NA	intron (NM_199021, intron 5 of 25)	intron (NM_199021, intron 5 of 25)	417007	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding
chipseq_peak_13331	chr9	16878040	16878390	+	0	NA	Intergenic	Intergenic	-499984	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT tumor suppressor homolog 3 (Drosophila)	protein-coding
chipseq_peak_8632	chr3	40431653	40433302	+	0	NA	Intergenic	Intergenic	90435	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_13229	chr8	118725442	118726046	+	0	NA	intron (NM_019707, intron 3 of 13)	intron (NM_019707, intron 3 of 13)	442133	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding
chipseq_peak_5945	chr16	72923130	72925044	+	0	NA	intron (NM_019413, intron 3 of 28)	intron (NM_019413, intron 3 of 28)	260938	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_2857	chr12	37748421	37748932	+	0	NA	Intergenic	Intergenic	-132029	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding
chipseq_peak_4351	chr14	64343843	64344550	+	0	NA	intron (NM_001253712, intron 1 of 5)	intron (NM_001253712, intron 1 of 5)	72760	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_9261	chr3	136977910	136978206	+	0	NA	Intergenic	Intergenic	307992	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding
chipseq_peak_10334	chr5	18456368	18456817	+	0	NA	Intergenic	Intergenic	-96179	NM_010305	14677	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding
chipseq_peak_3262	chr12	91972094	91972604	+	0	NA	Intergenic	MER99|DNA|hAT?	-123192	NM_001039089	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chipseq_peak_3877	chr13	91367741	91368373	+	0	NA	TTS (NR_045161)	TTS (NR_045161)	20028	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA
chipseq_peak_10084	chr4	102840867	102841576	+	0	NA	intron (NM_001285859, intron 1 of 23)	intron (NM_001285859, intron 1 of 23)	81086	NM_144906	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding
chipseq_peak_274	chr1	41825148	41828192	+	0	NA	Intergenic	Intergenic	-645418	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_4106	chr13	116897830	116898552	+	0	NA	intron (NM_001081009, intron 11 of 26)	intron (NM_001081009, intron 11 of 26)	127325	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding
chipseq_peak_8173	chr2	131169860	131170122	+	0	NA	TTS (NM_027641)	TTS (NM_027641)	4819	NM_027641	70997	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding
chipseq_peak_12648	chr8	15394190	15394569	+	0	NA	Intergenic	Intergenic	336726	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding
chipseq_peak_9172	chr3	120982252	120984362	+	0	NA	Intergenic	Intergenic	-96575	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_248	chr1	40788779	40790204	+	0	NA	intron (NM_172499, intron 1 of 5)	intron (NM_172499, intron 1 of 5)	1166	NM_172499	211798	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding
chipseq_peak_373	chr1	56128868	56131638	+	0	NA	Intergenic	Intergenic	111275	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_12864	chr8	54491047	54491341	+	0	NA	Intergenic	Intergenic	38804	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding
chipseq_peak_3101	chr12	68392255	68392649	+	0	NA	Intergenic	L1ME3|LINE|L1	-723181	NR_033146	100316870	Mm.379794	NR_033146		Gm17821	-	DDB1 and CUL4 associated factor 5 pseudogene	pseudo
chipseq_peak_10770	chr5	85996501	85997435	+	0	NA	Intergenic	Intergenic	68615	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_13025	chr8	79872448	79873123	+	0	NA	Intergenic	Intergenic	160965	NM_026904	68999	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding
chipseq_peak_4090	chr13	114477849	114478906	+	0	NA	Intergenic	Intergenic	-19426	NM_001301375	14313	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding
chipseq_peak_1003	chr1	164474457	164475123	+	0	NA	Intergenic	Intergenic	-16435	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding
chipseq_peak_13739	chr9	86710548	86710984	+	0	NA	Intergenic	Intergenic	-14852	NM_008615	17436	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding
chipseq_peak_7240	chr19	37565817	37566161	+	0	NA	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	15571	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding
chipseq_peak_6914	chr18	64716237	64717203	+	0	NA	Intergenic	Intergenic	-55720	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding
chipseq_peak_5997	chr16	75361960	75362769	+	0	NA	Intergenic	Intergenic	223697	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_5685	chr16	43409700	43410834	+	0	NA	TTS (NR_046026)	TTS (NR_046026)	9929	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA
chipseq_peak_13703	chr9	78983757	78984161	+	0	NA	Intergenic	Intergenic	368413	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding
chipseq_peak_12415	chr7	101191208	101192062	+	0	NA	intron (NM_199012, intron 5 of 20)	intron (NM_199012, intron 5 of 20)	82860	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding
chipseq_peak_4651	chr14	109891277	109891552	+	0	NA	Intergenic	Intergenic	431184	NR_039542	100628607		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA
chipseq_peak_628	chr1	96276447	96277122	+	0	NA	Intergenic	Intergenic	-255026	NR_040467	73454	Mm.396229	NR_040467	ENSMUSG00000100062	1700063A18Rik	-	RIKEN cDNA 1700063A18 gene	ncRNA
chipseq_peak_6181	chr17	10274374	10274680	+	0	NA	intron (NM_001159516, intron 2 of 6)	intron (NM_001159516, intron 2 of 6)	44834	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding
chipseq_peak_3098	chr12	67618327	67618714	+	0	NA	Intergenic	Intergenic	50751	NR_033146	100316870	Mm.379794	NR_033146		Gm17821	-	DDB1 and CUL4 associated factor 5 pseudogene	pseudo
chipseq_peak_7843	chr2	65933358	65935118	+	0	NA	intron (NM_001290665, intron 1 of 4)	intron (NM_001290665, intron 1 of 4)	2373	NM_001290665	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding
chipseq_peak_11604	chr6	77069547	77069995	+	0	NA	intron (NM_145732, intron 10 of 18)	intron (NM_145732, intron 10 of 18)	-172946	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_7470	chr2	14140929	14141359	+	0	NA	intron (NM_011484, intron 12 of 13)	intron (NM_011484, intron 12 of 13)	-33380	NM_001081310	625286	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding
chipseq_peak_12596	chr8	7462628	7463621	+	0	NA	Intergenic	Intergenic	1197649	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_10526	chr5	56956870	56957278	+	0	NA	Intergenic	Intergenic	760845	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_14	chr1	7138535	7139646	+	0	NA	intron (NM_183028, intron 2 of 5)	intron (NM_183028, intron 2 of 5)	50170	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
chipseq_peak_9105	chr3	116968643	116968988	+	0	NA	5' UTR (NM_023245, exon 1 of 8)	5' UTR (NM_023245, exon 1 of 8)	137	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding
chipseq_peak_6013	chr16	76154200	76154707	+	0	NA	intron (NR_040575, intron 2 of 2)	intron (NR_040575, intron 2 of 2)	31840	NR_040575	78215	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA
chipseq_peak_987	chr1	161976432	161976783	+	0	NA	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	3029	NM_001204904	75368	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding
chipseq_peak_3478	chr13	23533447	23533767	+	0	NA	promoter-TSS (NM_175661)	promoter-TSS (NM_175661)	-304	NM_175661	319173	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding
chipseq_peak_9323	chr3	144308430	144308875	+	0	NA	Intergenic	Intergenic	-103397	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding
chipseq_peak_13088	chr8	94944382	94945775	+	0	NA	Intergenic	Intergenic	21384	NM_001033468	382045	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding
chipseq_peak_10238	chr5	3941085	3941805	+	0	NA	intron (NM_194462, intron 1 of 47)	intron (NM_194462, intron 1 of 47)	13259	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding
chipseq_peak_12884	chr8	54974363	54976877	+	0	NA	intron (NM_001253756, intron 1 of 5)	intron (NM_001253756, intron 1 of 5)	20892	NM_153581	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_9834	chr4	58508858	58509294	+	0	NA	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-9673	NM_001290486	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding
chipseq_peak_9860	chr4	68594665	68595754	+	0	NA	Intergenic	MIRb|SINE|MIR	359188	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding
chipseq_peak_10703	chr5	79855816	79856363	+	0	NA	Intergenic	Intergenic	-340185	NR_035474	100316701		NR_035474	ENSMUSG00000089570	Mir669m-1	mmu-mir-669m-1	microRNA 669m-1	ncRNA
chipseq_peak_3693	chr13	70093930	70094383	+	0	NA	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-65808	NR_045965	74280	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA
chipseq_peak_184	chr1	32462879	32464200	+	0	NA	intron (NM_133235, intron 4 of 8)	intron (NM_133235, intron 4 of 8)	57460	NM_001199956	408192	Mm.485769	NM_001199956		Gm9839	ENSMUSG00000049830|Senp15	predicted gene 9839	protein-coding
chipseq_peak_960	chr1	158513687	158514049	+	0	NA	intron (NM_001205204, intron 7 of 22)	intron (NM_001205204, intron 7 of 22)	8243	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA
chipseq_peak_11168	chr6	12037680	12038439	+	0	NA	intron (NM_001168382, intron 16 of 17)	intron (NM_001168382, intron 16 of 17)	71521	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo
chipseq_peak_9467	chr4	6870460	6870787	+	0	NA	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	120100	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_13625	chr9	61211635	61212127	+	0	NA	Intergenic	L1M5|LINE|L1	73366	NR_045705	619328	Mm.325722	NR_045705		I730028E13Rik	-	RIKEN cDNA I730028E13 gene	ncRNA
chipseq_peak_6673	chr18	24955561	24955965	+	0	NA	intron (NM_175276, intron 5 of 26)	intron (NM_175276, intron 5 of 26)	210202	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding
chipseq_peak_3845	chr13	85926386	85928211	+	0	NA	Intergenic	Intergenic	119497	NM_007749	12867	Mm.378898	NM_007749		Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding
chipseq_peak_3705	chr13	75647286	75647598	+	0	NA	Intergenic	MMERVK9E_I-int|LTR|ERVK	2396	NR_030451	751556		NR_030451	ENSMUSG00000076236	Mir682	Mirn682|mir-682|mmu-mir-682	microRNA 682	ncRNA
chipseq_peak_10974	chr5	123064260	123064701	+	0	NA	Intergenic	PB1D10|SINE|Alu	-11795	NM_001039723	330189	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding
chipseq_peak_3872	chr13	91039142	91039533	+	0	NA	intron (NM_025770, intron 4 of 7)	intron (NM_025770, intron 4 of 7)	116215	NM_024175	66475	Mm.306302	NM_024175		Rps23	2410044J15Rik	ribosomal protein S23	protein-coding
chipseq_peak_11588	chr6	74101165	74101522	+	0	NA	Intergenic	Intergenic	-630322	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA
chipseq_peak_1594	chr10	56207253	56207663	+	0	NA	intron (NM_001033385, intron 3 of 32)	intron (NM_001033385, intron 3 of 32)	21231	NM_001033385	544696	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding
chipseq_peak_865	chr1	141352294	141353272	+	0	NA	Intergenic	Intergenic	-696381	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_9960	chr4	80539870	80540373	+	0	NA	Intergenic	Intergenic	-294092	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_13375	chr9	27437017	27438443	+	0	NA	Intergenic	Intergenic	40518	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding
chipseq_peak_4453	chr14	79723853	79724364	+	0	NA	Intergenic	Intergenic	-14323	NR_030436	791080		NR_030436	ENSMUSG00000076453	Mir759	Mirn759|mir-759|mmu-mir-759	microRNA 759	ncRNA
chipseq_peak_4572	chr14	96550102	96552393	+	0	NA	Intergenic	Lx3C|LINE|L1	-32213	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
chipseq_peak_12102	chr7	51599987	51600510	+	0	NA	Intergenic	Intergenic	-21582	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding
chipseq_peak_10686	chr5	76702082	76702642	+	0	NA	Intergenic	Intergenic	110648	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding
chipseq_peak_3776	chr13	82618375	82621519	+	0	NA	Intergenic	Intergenic	78386	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_6277	chr17	49732293	49733033	+	0	NA	intron (NM_177052, intron 10 of 22)	intron (NM_177052, intron 10 of 22)	117491	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding
chipseq_peak_8704	chr3	52891795	52894191	+	0	NA	Intergenic	IMPB_01|Satellite|Satellite	34673	NR_040555	622124	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA
chipseq_peak_4751	chr14	123139358	123139673	+	0	NA	Intergenic	Intergenic	-28988	NR_045145	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
chipseq_peak_12868	chr8	54724179	54725019	+	0	NA	promoter-TSS (NM_001172152)	promoter-TSS (NM_001172152)	-231	NM_001172152	244484	Mm.95281	NM_028220	ENSMUSG00000039375	Wdr17	3010002I12Rik|B230207L18Rik	WD repeat domain 17	protein-coding
chipseq_peak_4820	chr15	13897893	13898969	+	0	NA	Intergenic	Intergenic	-724756	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_10305	chr5	15815065	15815728	+	0	NA	Intergenic	Intergenic	68370	NR_045974	75058	Mm.183467	NR_045974	ENSMUSG00000105185	4930519H02Rik	-	RIKEN cDNA 4930519H02 gene	ncRNA
chipseq_peak_7665	chr2	47300735	47301687	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-1512898	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_7512	chr2	27432194	27432532	+	0	NA	Intergenic	Charlie5|DNA|hAT-Charlie	-5538	NM_009500	22325	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175	vav 2 oncogene	protein-coding
chipseq_peak_9767	chr4	47332710	47333240	+	0	NA	Intergenic	Intergenic	-20247	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding
chipseq_peak_11079	chr5	141517592	141518078	+	0	NA	intron (NM_177879, intron 1 of 44)	intron (NM_177879, intron 1 of 44)	276301	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick homolog 1 (chicken)	protein-coding
chipseq_peak_2057	chr10	123403149	123403517	+	0	NA	intron (NR_045514, intron 1 of 5)	intron (NR_045514, intron 1 of 5)	139257	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_4214	chr14	28166757	28167187	+	0	NA	intron (NM_177814, intron 13 of 15)	intron (NM_177814, intron 13 of 15)	-338501	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
chipseq_peak_4249	chr14	35074246	35074763	+	0	NA	intron (NM_008166, intron 4 of 15)	intron (NM_008166, intron 4 of 15)	179895	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA
chipseq_peak_10399	chr5	37083846	37084385	+	0	NA	intron (NM_178394, intron 1 of 12)	L1MCa|LINE|L1	33258	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding
chipseq_peak_6010	chr16	75588560	75589314	+	0	NA	Intergenic	Intergenic	-2876	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_4490	chr14	85934465	85935398	+	0	NA	Intergenic	Intergenic	-311039	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
chipseq_peak_5827	chr16	62860081	62860599	+	0	NA	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	6033	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
chipseq_peak_8352	chr2	160645406	160645935	+	0	NA	promoter-TSS (NM_009408)	promoter-TSS (NM_009408)	-227	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding
chipseq_peak_1492	chr10	40762516	40763482	+	0	NA	intron (NM_177793, intron 4 of 4)	intron (NM_177793, intron 4 of 4)	79717	NM_177793	327747	Mm.80407	NM_177793	ENSMUSG00000045555	Mettl24	9030224M15Rik	methyltransferase like 24	protein-coding
chipseq_peak_4187	chr14	21342771	21343599	+	0	NA	intron (NM_134079, intron 7 of 10)	intron (NM_134079, intron 7 of 10)	-156585	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chipseq_peak_8761	chr3	56362479	56363000	+	0	NA	Intergenic	Intergenic	-179038	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_14034	chrX	69811786	69812255	+	0	NA	intron (NM_008032, intron 8 of 19)	intron (NM_008032, intron 8 of 19)	-133261	NM_029316	75509	Mm.233475	NM_029316	ENSMUSG00000059690	1700020N15Rik	-	RIKEN cDNA 1700020N15 gene	protein-coding
chipseq_peak_10132	chr4	110758101	110758585	+	0	NA	intron (NM_030231, intron 3 of 12)	MIRb|SINE|MIR	360645	NM_001284190	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding
chipseq_peak_763	chr1	126153834	126154250	+	0	NA	intron (NM_176957, intron 7 of 12)	intron (NM_176957, intron 7 of 12)	-241114	NM_001311089	72585	Mm.490405	NM_145100		Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding
chipseq_peak_543	chr1	77823747	77825061	+	0	NA	Intergenic	Intergenic	-309316	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding
chipseq_peak_4502	chr14	87337871	87338919	+	0	NA	Intergenic	Intergenic	-78188	NM_172605	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding
chipseq_peak_12967	chr8	66722423	66723592	+	0	NA	Intergenic	L1ME3B|LINE|L1	25585	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding
chipseq_peak_12203	chr7	72239813	72240264	+	0	NA	intron (NM_001024703, intron 4 of 22)	intron (NM_001024703, intron 4 of 22)	66557	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding
chipseq_peak_12740	chr8	36428971	36429717	+	0	NA	Intergenic	Intergenic	-59847	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding
chipseq_peak_5608	chr16	34711134	34711751	+	0	NA	intron (NM_172824, intron 9 of 12)	intron (NM_172824, intron 9 of 12)	20826	NM_172824	239839	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding
chipseq_peak_1801	chr10	93070349	93071210	+	0	NA	Intergenic	B3|SINE|B2	-90097	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding
chipseq_peak_5684	chr16	43407254	43407622	+	0	NA	intron (NM_019778, intron 2 of 8)	intron (NM_019778, intron 2 of 8)	12758	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA
chipseq_peak_2621	chr11	118801746	118802181	+	0	NA	intron (NM_001285437, intron 2 of 13)	intron (NM_001285437, intron 2 of 13)	-40922	NM_001285438	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding
chipseq_peak_5623	chr16	38752621	38752843	+	0	NA	intron (NM_001285793, intron 2 of 6)	AT_rich|Low_complexity|Low_complexity	10473	NM_019804	56375	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding
chipseq_peak_2686	chr12	11802111	11803306	+	0	NA	Intergenic	Intergenic	80191	NR_003964	627110	Mm.194735	NR_003964		Tubb2a-ps2	C79445	tubulin, beta 2a, pseudogene 2	pseudo
chipseq_peak_10417	chr5	40136570	40137618	+	0	NA	Intergenic	L1MC1|LINE|L1	-492463	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_5341	chr15	80874909	80875314	+	0	NA	intron (NM_144812, intron 6 of 24)	intron (NM_144812, intron 6 of 24)	-64928	NR_039573	100628612		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA
chipseq_peak_235	chr1	38847927	38849170	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-27333	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding
chipseq_peak_135	chr1	25920463	25921627	+	0	NA	Intergenic	Intergenic	-91338	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
chipseq_peak_8759	chr3	56291729	56292157	+	0	NA	Intergenic	L1MB3|LINE|L1	-108242	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_4969	chr15	32376150	32376677	+	0	NA	intron (NM_009154, intron 2 of 22)	intron (NM_009154, intron 2 of 22)	131600	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding
chipseq_peak_6257	chr17	44836758	44837105	+	0	NA	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	-22134	NR_073392	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding
chipseq_peak_1302	chr10	16492284	16492742	+	0	NA	Intergenic	Intergenic	603269	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA
chipseq_peak_193	chr1	32902395	32903096	+	0	NA	Intergenic	Intergenic	-355452	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding
chipseq_peak_9429	chr3	157604461	157605085	+	0	NA	intron (NM_011196, intron 1 of 2)	intron (NM_011196, intron 1 of 2)	37881	NM_011196	19218	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding
chipseq_peak_1979	chr10	110393525	110394173	+	0	NA	Intergenic	Intergenic	-206801	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
chipseq_peak_13598	chr9	59116166	59116838	+	0	NA	Intergenic	Intergenic	-80061	NM_001042752	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding
chipseq_peak_3821	chr13	84347171	84348669	+	0	NA	Intergenic	Intergenic	125624	NR_029419	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
chipseq_peak_10504	chr5	53154533	53155125	+	0	NA	intron (NM_172710, intron 10 of 23)	MLT2B1|LTR|ERVL	58623	NM_172710	231238	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding
chipseq_peak_13449	chr9	34957681	34959188	+	0	NA	intron (NM_001190914, intron 5 of 16)	L1MA6|LINE|L1	-158294	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA
chipseq_peak_5879	chr16	67098693	67099899	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	442178	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA
chipseq_peak_13669	chr9	70699423	70701511	+	0	NA	intron (NM_007399, intron 1 of 15)	intron (NM_007399, intron 1 of 15)	21466	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding
chipseq_peak_9835	chr4	58749497	58749787	+	0	NA	Intergenic	Intergenic	36078	NM_146920	258922	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding
chipseq_peak_8679	chr3	49642099	49643210	+	0	NA	Intergenic	Intergenic	114662	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding
chipseq_peak_10094	chr4	103881683	103882711	+	0	NA	Intergenic	Intergenic	-485341	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
chipseq_peak_2258	chr11	37107084	37107651	+	0	NA	Intergenic	Intergenic	-163126	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
chipseq_peak_3276	chr12	93449423	93449972	+	0	NA	Intergenic	Intergenic	-4874	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA
chipseq_peak_13314	chr9	13623885	13624543	+	0	NA	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	4225	NM_001013813	270118	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like 2 (Drosophila)	protein-coding
chipseq_peak_8615	chr3	38934603	38935428	+	0	NA	intron (NM_183221, intron 1 of 16)	intron (NM_183221, intron 1 of 16)	48075	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT tumor suppressor homolog 4 (Drosophila)	protein-coding
chipseq_peak_8883	chr3	75584853	75585129	+	0	NA	intron (NM_009250, intron 1 of 8)	intron (NM_009250, intron 1 of 8)	27458	NM_009250	20713	Mm.41560	NM_009250		Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding
chipseq_peak_12528	chr7	129554506	129555167	+	0	NA	Intergenic	Intergenic	-37027	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding
chipseq_peak_8863	chr3	70544324	70545473	+	0	NA	Intergenic	Intergenic	262393	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
chipseq_peak_523	chr1	73529758	73530139	+	0	NA	Intergenic	Intergenic	-122379	NR_003202	723792	Mm.385493	NR_003202		Pinc	-	pregnancy induced noncoding RNA	ncRNA
chipseq_peak_5198	chr15	62192374	62193296	+	0	NA	intron (NR_132746, intron 3 of 6)	L1MA6|LINE|L1	26616	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_3495	chr13	28415260	28418395	+	0	NA	Intergenic	Intergenic	274343	NM_023746	28078	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding
chipseq_peak_10073	chr4	99228896	99229518	+	0	NA	intron (NM_175029, intron 8 of 10)	intron (NM_175029, intron 8 of 10)	35060	NM_001145967	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding
chipseq_peak_11941	chr6	137723878	137724285	+	0	NA	Intergenic	Intergenic	-11001	NM_011499	20901	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding
chipseq_peak_13860	chr9	106531859	106532289	+	0	NA	Intergenic	Intergenic	17501	NM_029300	75470	Mm.63799	NM_029300	ENSMUSG00000066382	Iqcf5	1700007L12Rik	IQ motif containing F5	protein-coding
chipseq_peak_5166	chr15	58040655	58041164	+	0	NA	Intergenic	Intergenic	-6615	NM_029418	75758	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding
chipseq_peak_11910	chr6	128504702	128506171	+	0	NA	intron (NM_007376, intron 14 of 35)	intron (NM_007376, intron 14 of 35)	21284	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding
chipseq_peak_13741	chr9	86973591	86973920	+	0	NA	Intergenic	Intergenic	-41782	NM_001037907	382089	Mm.92244	NM_001037907	ENSMUSG00000047897	Ripply2	C030002E08Rik|Gm1122	ripply2 homolog (zebrafish)	protein-coding
chipseq_peak_131	chr1	25696726	25697927	+	0	NA	intron (NM_175642, intron 2 of 30)	intron (NM_175642, intron 2 of 30)	132381	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
chipseq_peak_1812	chr10	95043979	95044597	+	0	NA	Intergenic	Intergenic	-99710	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding
chipseq_peak_8542	chr3	26479648	26480060	+	0	NA	Intergenic	Intergenic	-147945	NM_138666	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_10642	chr5	71665709	71666776	+	0	NA	Intergenic	Intergenic	-7934	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding
chipseq_peak_10624	chr5	68120828	68121267	+	0	NA	intron (NM_001018019, intron 2 of 3)	intron (NM_001018019, intron 2 of 3)	89212	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding
chipseq_peak_7335	chr19	58822522	58822861	+	0	NA	intron (NM_175199, intron 4 of 11)	intron (NM_175199, intron 4 of 11)	-28277	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding
chipseq_peak_13997	chrX	51598701	51599112	+	0	NA	intron (NM_001077202, intron 2 of 4)	intron (NM_001077202, intron 2 of 4)	81571	NM_015819	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding
chipseq_peak_7563	chr2	38403166	38403508	+	0	NA	Intergenic	Intergenic	52029	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding
chipseq_peak_3170	chr12	74557856	74558729	+	0	NA	Intergenic	Intergenic	260818	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding
chipseq_peak_2034	chr10	118956296	118956933	+	0	NA	Intergenic	Intergenic	-29471	NR_110482	216377	Mm.208936	NR_110482		Gm38403	C230029M16	predicted gene, 38403	ncRNA
chipseq_peak_2183	chr11	24059218	24060248	+	0	NA	Intergenic	Intergenic	-18323	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding
chipseq_peak_1739	chr10	84437432	84438530	+	0	NA	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	2490	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding
chipseq_peak_1314	chr10	18020733	18021191	+	0	NA	intron (NM_028440, intron 1 of 2)	intron (NM_028440, intron 1 of 2)	2290	NM_028440	73112	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding
chipseq_peak_6215	chr17	29718730	29719010	+	0	NA	Intergenic	Intergenic	-1853	NM_026782	68597	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding
chipseq_peak_2246	chr11	35556199	35556466	+	0	NA	intron (NM_011412, intron 6 of 35)	intron (NM_011412, intron 6 of 35)	-60484	NR_029799	723924		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA
chipseq_peak_4354	chr14	64378985	64379823	+	0	NA	intron (NM_001253712, intron 1 of 5)	intron (NM_001253712, intron 1 of 5)	37552	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_8893	chr3	76617008	76617537	+	0	NA	intron (NM_178673, intron 10 of 15)	intron (NM_178673, intron 10 of 15)	541689	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding
chipseq_peak_14000	chrX	51671297	51671969	+	0	NA	intron (NM_001077202, intron 2 of 4)	intron (NM_001077202, intron 2 of 4)	8844	NM_015819	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding
chipseq_peak_2123	chr11	8779396	8779829	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-115077	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding
chipseq_peak_8460	chr3	12757486	12757933	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-713946	NM_178631	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding
chipseq_peak_4605	chr14	104339263	104339710	+	0	NA	Intergenic	L1_Mur3|LINE|L1	128513	NM_011143	18996	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding
chipseq_peak_5517	chr16	16870372	16870769	+	0	NA	promoter-TSS (NM_011624)	promoter-TSS (NM_011624)	-321	NM_011624	21976	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding
chipseq_peak_9804	chr4	53488010	53489123	+	0	NA	intron (NM_001159633, intron 2 of 12)	intron (NM_001159633, intron 2 of 12)	48153	NM_001159633	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding
chipseq_peak_7901	chr2	76124852	76125300	+	0	NA	intron (NM_001081033, intron 9 of 19)	MARNA|DNA|TcMar-Mariner	-143109	NM_030188	78802	Mm.282339	NM_030188		Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding
chipseq_peak_6440	chr17	76889526	76890148	+	0	NA	Intergenic	Intergenic	1028814	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
chipseq_peak_11745	chr6	101793862	101794410	+	0	NA	intron (NR_027989, intron 3 of 5)	intron (NR_027989, intron 3 of 5)	19887	NR_027989	207157	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157|ENSMUSG00000052236	predicted gene 9871	ncRNA
chipseq_peak_4720	chr14	117939497	117939841	+	0	NA	intron (NM_001079844, intron 7 of 9)	intron (NM_001079844, intron 7 of 9)	14178	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA
chipseq_peak_4119	chr13	118418239	118418964	+	0	NA	Intergenic	Intergenic	-31349	NM_021556	59054	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding
chipseq_peak_1649	chr10	67383849	67384608	+	0	NA	Intergenic	Intergenic	-98947	NM_001036293	641340	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding
chipseq_peak_13809	chr9	101159494	101160580	+	0	NA	intron (NM_001161362, intron 6 of 13)	intron (NM_001161362, intron 6 of 13)	39036	NM_172144	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
chipseq_peak_12577	chr8	5848017	5848325	+	0	NA	Intergenic	Intergenic	-742939	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_751	chr1	123817695	123818361	+	0	NA	intron (NM_199021, intron 3 of 25)	intron (NM_199021, intron 3 of 25)	227531	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding
chipseq_peak_3250	chr12	89222959	89223579	+	0	NA	intron (NM_172544, intron 4 of 19)	L1ME3A|LINE|L1	269879	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
chipseq_peak_4607	chr14	105172713	105173255	+	0	NA	intron (NM_134077, intron 1 of 20)	L1MA4|LINE|L1	4343	NM_134077	74213	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding
chipseq_peak_753	chr1	123901209	123903124	+	0	NA	intron (NM_199021, intron 2 of 25)	intron (NM_199021, intron 2 of 25)	143393	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding
chipseq_peak_11775	chr6	103810706	103811241	+	0	NA	Intergenic	Intergenic	300097	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_10452	chr5	44872245	44872618	+	0	NA	Intergenic	Intergenic	-72685	NM_001286348	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding
chipseq_peak_6308	chr17	53587470	53587914	+	0	NA	intron (NM_001190846, intron 1 of 17)	intron (NM_001190846, intron 1 of 17)	3566	NM_001190846	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding
chipseq_peak_2279	chr11	39073525	39074641	+	0	NA	Intergenic	Intergenic	316142	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_8544	chr3	26827185	26827839	+	0	NA	intron (NM_029150, intron 4 of 10)	intron (NM_029150, intron 4 of 10)	189881	NM_029150	70862	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding
chipseq_peak_8118	chr2	114938506	114939158	+	0	NA	Intergenic	Intergenic	-283904	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
chipseq_peak_11683	chr6	96938779	96939300	+	0	NA	intron (NM_177233, intron 3 of 5)	intron (NM_177233, intron 3 of 5)	121372	NM_177233	320701	Mm.131700	NM_177233	ENSMUSG00000046500	Fam19a4	C130034I18Rik|Fam19a4 Tafa-4|Tafa-4	family with sequence similarity 19, member A4	protein-coding
chipseq_peak_5378	chr15	91017904	91019140	+	0	NA	intron (NM_001109042, intron 1 of 32)	intron (NM_001109042, intron 1 of 32)	31429	NM_016705	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding
chipseq_peak_8512	chr3	21089736	21090461	+	0	NA	Intergenic	L1M2|LINE|L1	-722921	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
chipseq_peak_2556	chr11	105731389	105731971	+	0	NA	intron (NM_181071, intron 4 of 25)	intron (NM_181071, intron 4 of 25)	141694	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
chipseq_peak_2047	chr10	122295700	122296212	+	0	NA	Intergenic	Intergenic	-152543	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding
chipseq_peak_1511	chr10	43887475	43888714	+	0	NA	intron (NM_001081054, intron 5 of 10)	intron (NM_001081054, intron 5 of 10)	13642	NM_001081054	76563	Mm.5904	NM_001081054	ENSMUSG00000019863	Qrsl1	2700038P16Rik|C80053|GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding
chipseq_peak_9584	chr4	20343326	20343907	+	0	NA	intron (NM_172987, intron 3 of 4)	intron (NM_172987, intron 3 of 4)	301564	NM_010281	14590	Mm.20461	NM_010281		Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding
chipseq_peak_6559	chr18	4387566	4388048	+	0	NA	intron (NM_026157, intron 6 of 8)	intron (NM_026157, intron 6 of 8)	12215	NM_026157	67440	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding
chipseq_peak_8098	chr2	113355522	113356474	+	0	NA	intron (NM_001285458, intron 1 of 16)	intron (NM_001285458, intron 1 of 16)	28262	NM_001285458	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|ld	formin 1	protein-coding
chipseq_peak_1147	chr1	181893751	181894261	+	0	NA	Intergenic	L1ME3A|LINE|L1	-51605	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding
chipseq_peak_12046	chr7	28943640	28944283	+	0	NA	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	18319	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding
chipseq_peak_972	chr1	159892516	159893343	+	0	NA	intron (NM_022312, intron 15 of 22)	L3|LINE|CR1	-151451	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding
chipseq_peak_6708	chr18	30634658	30635547	+	0	NA	Intergenic	Intergenic	362206	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_10881	chr5	109557590	109558746	+	0	NA	intron (NM_001310694, intron 1 of 7)	intron (NM_001310694, intron 1 of 7)	825	NM_001310694	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding
chipseq_peak_3873	chr13	91093130	91094629	+	0	NA	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130108	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding
chipseq_peak_3410	chr13	8424031	8424732	+	0	NA	intron (NM_001289530, intron 1 of 9)	intron (NM_001289530, intron 1 of 9)	221515	NM_001289530	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
chipseq_peak_7113	chr19	19719933	19720167	+	0	NA	Intergenic	Intergenic	-608854	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
chipseq_peak_6306	chr17	53258556	53259672	+	0	NA	Intergenic	Intergenic	204207	NM_172497	211482	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding
chipseq_peak_3512	chr13	29414951	29415842	+	0	NA	intron (NR_131896, intron 13 of 16)	intron (NR_131896, intron 13 of 16)	399141	NR_045073	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
chipseq_peak_6759	chr18	40031480	40031768	+	0	NA	Intergenic	Intergenic	187775	NM_023311	67180	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding
chipseq_peak_5449	chr15	102469874	102470538	+	0	NA	promoter-TSS (NM_011042)	promoter-TSS (NM_011042)	-426	NM_011042	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding
chipseq_peak_8077	chr2	109904149	109904780	+	0	NA	intron (NR_033473, intron 4 of 4)	intron (NR_033473, intron 4 of 4)	8855	NR_033473	100038454	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939|OTTMUSG00000015136	pluripotency associated transcript 8	ncRNA
chipseq_peak_5185	chr15	60270188	60270590	+	0	NA	Intergenic	Intergenic	-253771	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding
chipseq_peak_2947	chr12	49873186	49873695	+	0	NA	Intergenic	Intergenic	-392578	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_8559	chr3	28532252	28533104	+	0	NA	intron (NM_001163007, intron 4 of 31)	intron (NM_001163007, intron 4 of 31)	112735	NR_130342	100628591		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA
chipseq_peak_5324	chr15	75588586	75588913	+	0	NA	Intergenic	Intergenic	-7909	NM_026730	68453	Mm.46367	NM_026730	ENSMUSG00000022579	Gpihbp1	1110002J19Rik|GPI-HBP1	GPI-anchored HDL-binding protein 1	protein-coding
chipseq_peak_2617	chr11	117407357	117408417	+	0	NA	Intergenic	Intergenic	-6502	NR_132097	105827746	Mm.388009	NR_132097		Gm11729	OTTMUSG00000003784	predicted gene 11729	ncRNA
chipseq_peak_644	chr1	98045617	98046420	+	0	NA	intron (NR_037993, intron 1 of 2)	intron (NR_037993, intron 1 of 2)	1775	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA
chipseq_peak_6943	chr18	66988948	66989977	+	0	NA	Intergenic	Intergenic	-39501	NR_040461	100503582	Mm.329508	NR_040461		Gm19784	-	predicted gene, 19784	ncRNA
chipseq_peak_3310	chr12	98961244	98961949	+	0	NA	intron (NM_198311, intron 9 of 14)	intron (NM_198311, intron 9 of 14)	40984	NM_198311	76260	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding
chipseq_peak_3541	chr13	38410461	38411110	+	0	NA	intron (NM_007556, intron 1 of 6)	intron (NM_007556, intron 1 of 6)	51008	NR_131033	75854	Mm.417810	NR_131033		4930579J19Rik	-	RIKEN cDNA 4930579J19 gene	ncRNA
chipseq_peak_2317	chr11	42246106	42247613	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-63929	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding
chipseq_peak_8293	chr2	143018624	143019101	+	0	NA	Intergenic	Intergenic	-44207	NM_021335	20639	Mm.1323	NM_021335		Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding
chipseq_peak_10155	chr4	123946688	123947378	+	0	NA	Intergenic	Intergenic	29600	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding
chipseq_peak_11721	chr6	99137111	99137428	+	0	NA	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-108971	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
chipseq_peak_11905	chr6	123795053	123795562	+	0	NA	intron (NM_001104639, intron 3 of 5)	intron (NM_001104639, intron 3 of 5)	16336	NM_001104639	243628	Mm.469873	NM_001104639	ENSMUSG00000072780	Vmn2r24	EG243628	vomeronasal 2, receptor 24	protein-coding
chipseq_peak_3733	chr13	78520112	78521682	+	0	NA	Intergenic	Intergenic	-321915	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding
chipseq_peak_3702	chr13	73116901	73117986	+	0	NA	Intergenic	Intergenic	111657	NR_126459	75361	Mm.385732	NR_126459		4930555K05Rik	-	RIKEN cDNA 4930555K05 gene	ncRNA
chipseq_peak_3825	chr13	84451707	84452704	+	0	NA	Intergenic	Intergenic	229909	NR_029419	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
chipseq_peak_9959	chr4	80516875	80518374	+	0	NA	Intergenic	Intergenic	-316589	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_4268	chr14	39043402	39044470	+	0	NA	intron (NM_008734, intron 1 of 9)	intron (NM_008734, intron 1 of 9)	145634	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
chipseq_peak_10046	chr4	93551133	93551480	+	0	NA	Intergenic	Intergenic	-215795	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding
chipseq_peak_7162	chr19	24461869	24462887	+	0	NA	intron (NM_008846, intron 1 of 14)	intron (NM_008846, intron 1 of 14)	15096	NM_026520	68034	Mm.440181	NM_026520		Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding
chipseq_peak_12563	chr7	136829724	136830170	+	0	NA	Intergenic	Intergenic	-64664	NM_008598	17314	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding
chipseq_peak_6113	chr16	92399720	92400452	+	0	NA	promoter-TSS (NM_019466)	promoter-TSS (NM_019466)	-8	NM_019466	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
chipseq_peak_2977	chr12	51107677	51108619	+	0	NA	Intergenic	Intergenic	102992	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
chipseq_peak_1328	chr10	20451668	20452572	+	0	NA	intron (NM_013875, intron 3 of 12)	intron (NM_013875, intron 3 of 12)	104301	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding
chipseq_peak_1722	chr10	74621797	74622144	+	0	NA	intron (NM_001142735, intron 29 of 32)	intron (NM_001142735, intron 29 of 32)	-345261	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding
chipseq_peak_5759	chr16	52114104	52114726	+	0	NA	intron (NM_001033238, intron 4 of 17)	intron (NM_001033238, intron 4 of 17)	82866	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
chipseq_peak_6949	chr18	67542102	67542641	+	0	NA	intron (NM_176832, intron 2 of 13)	intron (NM_176832, intron 2 of 13)	6802	NM_176832	68166	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire homolog 1 (Drosophila)	protein-coding
chipseq_peak_4948	chr15	29485036	29485525	+	0	NA	Intergenic	Intergenic	-687313	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding
chipseq_peak_1563	chr10	52807852	52808160	+	0	NA	intron (NM_178675, intron 1 of 7)	L1ME1|LINE|L1	117505	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
chipseq_peak_2419	chr11	75289926	75292638	+	0	NA	Intergenic	Intergenic	57101	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding
chipseq_peak_10952	chr5	118513275	118514152	+	0	NA	Intergenic	Intergenic	-47006	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding
chipseq_peak_1700	chr10	71666866	71667595	+	0	NA	Intergenic	Intergenic	313460	NR_003644	108950	Mm.212793	NM_175390	ENSMUSG00000043859	1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo
chipseq_peak_5669	chr16	42083886	42084540	+	0	NA	intron (NM_175548, intron 3 of 5)	intron (NM_175548, intron 3 of 5)	219256	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
chipseq_peak_10887	chr5	110996745	110998182	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-6681	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_7701	chr2	52647013	52648024	+	0	NA	intron (NM_001285426, intron 2 of 13)	RSINE1|SINE|B4	28341	NM_001285428	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding
chipseq_peak_3529	chr13	34312565	34313533	+	0	NA	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	32133	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding
chipseq_peak_7934	chr2	78986988	78987405	+	0	NA	Intergenic	Intergenic	118149	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chipseq_peak_5966	chr16	73990959	73991609	+	0	NA	intron (NM_175549, intron 6 of 27)	intron (NM_175549, intron 6 of 27)	350783	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_11718	chr6	98937551	98938425	+	0	NA	intron (NM_001197321, intron 16 of 17)	intron (NM_001197321, intron 16 of 17)	90310	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
chipseq_peak_2672	chr12	7853639	7854418	+	0	NA	Intergenic	Intergenic	-123649	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding
chipseq_peak_3765	chr13	82381779	82382470	+	0	NA	Intergenic	Intergenic	316209	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_8992	chr3	85341851	85343060	+	0	NA	Intergenic	Intergenic	24936	NR_040542	73283	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA
chipseq_peak_11206	chr6	14018310	14019803	+	0	NA	Intergenic	Intergenic	147487	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
chipseq_peak_2520	chr11	96553121	96553423	+	0	NA	intron (NM_001033186, intron 4 of 12)	intron (NM_001033186, intron 4 of 12)	88681	NM_001177899	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding
chipseq_peak_139	chr1	26463115	26463695	+	0	NA	Intergenic	Intergenic	224055	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding
chipseq_peak_2551	chr11	105125807	105126265	+	0	NA	promoter-TSS (NM_172567)	promoter-TSS (NM_172567)	-389	NM_172567	52686	Mm.270091	NM_172567		Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding
chipseq_peak_10611	chr5	66910082	66911129	+	0	NA	intron (NM_001001980, intron 3 of 25)	(TA)n|Simple_repeat|Simple_repeat	-57811	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding
chipseq_peak_1213	chr1	194042782	194043752	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	179492	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_8092	chr2	113055361	113055925	+	0	NA	Intergenic	Intergenic	-25312	NM_177652	20192	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding
chipseq_peak_2484	chr11	86664370	86664769	+	0	NA	intron (NM_029478, intron 3 of 11)	intron (NM_029478, intron 3 of 11)	8498	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA
chipseq_peak_14020	chrX	65562585	65564199	+	0	NA	Intergenic	Intergenic	515748	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding
chipseq_peak_8792	chr3	62217154	62218268	+	0	NA	Intergenic	Intergenic	-121066	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding
chipseq_peak_5297	chr15	70464130	70464931	+	0	NA	Intergenic	Intergenic	540297	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_1972	chr10	110272670	110273604	+	0	NA	Intergenic	Intergenic	-272918	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding
chipseq_peak_4108	chr13	117124005	117124521	+	0	NA	Intergenic	Intergenic	-5762	NR_046023	623312	Mm.131279	NR_046023		Gm6416	-	predicted gene 6416	ncRNA
chipseq_peak_123	chr1	25105371	25105624	+	0	NA	intron (NM_175642, intron 25 of 30)	intron (NM_175642, intron 25 of 30)	172457	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
chipseq_peak_318	chr1	48459910	48460290	+	0	NA	Intergenic	Intergenic	-992975	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_3616	chr13	47412926	47414501	+	0	NA	Intergenic	Intergenic	219710	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding
chipseq_peak_6859	chr18	54989843	54993695	+	0	NA	Intergenic	Intergenic	-1589	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_1975	chr10	110351972	110352525	+	0	NA	Intergenic	Intergenic	-248402	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
chipseq_peak_12566	chr7	138621176	138621792	+	0	NA	Intergenic	Intergenic	67242	NR_131022	75187	Mm.410810	NR_131022		4930543N07Rik	-	RIKEN cDNA 4930543N07 gene	ncRNA
chipseq_peak_12651	chr8	16014352	16014874	+	0	NA	intron (NM_053171, intron 41 of 69)	intron (NM_053171, intron 41 of 69)	154225	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_6756	chr18	39440888	39441099	+	0	NA	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	46252	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding
chipseq_peak_13496	chr9	42881545	42882247	+	0	NA	intron (NM_175481, intron 1 of 20)	L1ME1|LINE|L1	62475	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
chipseq_peak_3415	chr13	9473211	9473870	+	0	NA	intron (NM_001081426, intron 1 of 36)	L1MC3|LINE|L1	197015	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	DIP2 disco-interacting protein 2 homolog C (Drosophila)	protein-coding
chipseq_peak_6550	chr17	93609857	93610536	+	0	NA	Intergenic	Intergenic	411028	NM_001315504	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
chipseq_peak_8013	chr2	98354188	98354590	+	0	NA	Intergenic	Intergenic	886732	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_2082	chr10	125072002	125073162	+	0	NA	Intergenic	Intergenic	255953	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
chipseq_peak_11703	chr6	98170214	98170631	+	0	NA	Intergenic	MLT1G3-int|LTR|ERVL-MaLR	172332	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_8652	chr3	43246494	43246966	+	0	NA	Intergenic	Intergenic	1504112	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
chipseq_peak_8985	chr3	84936300	84938380	+	0	NA	intron (NM_001177773, intron 4 of 13)	intron (NM_001177773, intron 4 of 13)	-14871	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding
chipseq_peak_8949	chr3	81701870	81702750	+	0	NA	Intergenic	Intergenic	-230306	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
chipseq_peak_5250	chr15	66480342	66480765	+	0	NA	intron (NM_019457, intron 3 of 11)	intron (NM_019457, intron 3 of 11)	20357	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding
chipseq_peak_8773	chr3	56859222	56860160	+	0	NA	Intergenic	Intergenic	442228	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding
chipseq_peak_2192	chr11	24750030	24750413	+	0	NA	Intergenic	Intergenic	-19499	NR_033491	100038617	Mm.387376	NR_033491	ENSMUSG00000073103	Gm10466	ENSMUSG00000073103	predicted gene 10466	ncRNA
chipseq_peak_13566	chr9	52719455	52719948	+	0	NA	intron (NR_045333, intron 2 of 4)	intron (NR_045333, intron 2 of 4)	39838	NR_045333	382139	Mm.335162	NR_045333		Gm1715	-	predicted gene 1715	ncRNA
chipseq_peak_9849	chr4	65610874	65611146	+	0	NA	intron (NM_001161782, intron 1 of 1)	intron (NM_001161782, intron 1 of 1)	6024	NM_001161782	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding
chipseq_peak_5689	chr16	43906897	43907366	+	0	NA	intron (NM_027801, intron 4 of 15)	intron (NM_027801, intron 4 of 15)	17229	NM_027801	212153	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding
chipseq_peak_7550	chr2	37430955	37432062	+	0	NA	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	-589	NM_146253	241322	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding
chipseq_peak_2492	chr11	88372594	88372924	+	0	NA	intron (NM_054043, intron 10 of 13)	RLTR10A|LTR|ERVK	19986	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA
chipseq_peak_844	chr1	138751768	138752124	+	0	NA	Intergenic	Lx8b|LINE|L1	-69871	NR_040304	545363	Mm.362817	NR_040304	ENSMUSG00000100459	Gm5833	-	predicted gene 5833	ncRNA
chipseq_peak_13963	chrX	7789321	7790183	+	0	NA	promoter-TSS (NM_001290455)	promoter-TSS (NM_001290455)	-241	NM_001290455	54645	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding
chipseq_peak_9187	chr3	123150052	123150743	+	0	NA	intron (NM_080451, intron 1 of 4)	intron (NM_080451, intron 1 of 4)	85752	NM_080451	118449	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding
chipseq_peak_13242	chr8	123768482	123769245	+	0	NA	Intergenic	Intergenic	34905	NR_040702	234863	Mm.246601	NR_040702		6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA
chipseq_peak_5350	chr15	83853481	83853842	+	0	NA	intron (NM_172610, intron 5 of 6)	intron (NM_172610, intron 5 of 6)	65712	NM_001161629	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding
chipseq_peak_11243	chr6	18450002	18451131	+	0	NA	intron (NM_080285, intron 2 of 22)	intron (NM_080285, intron 2 of 22)	64259	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_9117	chr3	117395151	117395605	+	0	NA	Intergenic	L3|LINE|CR1	-34502	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding
chipseq_peak_7678	chr2	48752362	48752691	+	0	NA	Intergenic	Intergenic	-61583	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_2810	chr12	32717293	32717917	+	0	NA	Intergenic	Intergenic	-102730	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding
chipseq_peak_10102	chr4	104384805	104386119	+	0	NA	intron (NR_104385, intron 1 of 15)	intron (NR_104385, intron 1 of 15)	17924	NR_104385	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
chipseq_peak_4738	chr14	119821299	119822318	+	0	NA	intron (NM_015820, intron 1 of 1)	L1ME1|LINE|L1	72581	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA
chipseq_peak_1150	chr1	183181050	183181597	+	0	NA	intron (NM_001278218, intron 1 of 8)	intron (NM_001278218, intron 1 of 8)	-33766	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched homolog 1 (Drosophila)	protein-coding
chipseq_peak_12447	chr7	113250538	113251780	+	0	NA	intron (NM_001243048, intron 2 of 16)	intron (NM_001243048, intron 2 of 16)	43694	NM_001243048	11865	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding
chipseq_peak_5563	chr16	26700381	26701088	+	0	NA	intron (NM_134103, intron 7 of 7)	intron (NM_134103, intron 7 of 7)	54768	NR_105063	100504628	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA
chipseq_peak_5447	chr15	100887677	100888183	+	0	NA	intron (NM_001077499, intron 1 of 26)	L1MEf|LINE|L1	17285	NM_001077499	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding
chipseq_peak_162	chr1	30700372	30701940	+	0	NA	Intergenic	Intergenic	162100	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
chipseq_peak_13916	chr9	113190997	113191673	+	0	NA	Intergenic	Intergenic	395817	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_10348	chr5	20919743	20920181	+	0	NA	exon (NM_001080977, exon 3 of 8)	exon (NM_001080977, exon 3 of 8)	-31027	NR_030699	320770	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA
chipseq_peak_7150	chr19	23401724	23402218	+	0	NA	intron (NM_174857, intron 2 of 13)	intron (NM_174857, intron 2 of 13)	46351	NM_174857	71738	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding
chipseq_peak_8146	chr2	123655618	123656023	+	0	NA	Intergenic	Intergenic	-434149	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
chipseq_peak_7301	chr19	52768933	52769624	+	0	NA	Intergenic	Intergenic	-153903	NR_030678	100043450	Mm.145594	NR_030678		AA387883	-	expressed sequence AA387883	ncRNA
chipseq_peak_12691	chr8	28148653	28149057	+	0	NA	Intergenic	Intergenic	-64002	NR_033590	666422	Mm.484413	NR_033590		Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo
chipseq_peak_11198	chr6	13748702	13749188	+	0	NA	Intergenic	L1MA4|LINE|L1	-70979	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	B630005N14Rik	AI666701	RIKEN cDNA B630005N14 gene	protein-coding
chipseq_peak_9699	chr4	32462095	32462496	+	0	NA	intron (NM_001109661, intron 1 of 4)	intron (NM_001109661, intron 1 of 4)	44860	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology 2	protein-coding
chipseq_peak_9044	chr3	102644314	102644712	+	0	NA	Intergenic	Intergenic	-90257	NM_027533	70747	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding
chipseq_peak_9604	chr4	23783402	23784223	+	0	NA	Intergenic	Intergenic	-712650	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_12602	chr8	7956579	7957221	+	0	NA	Intergenic	Intergenic	703873	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_12534	chr7	131628866	131629949	+	0	NA	Intergenic	Intergenic	69016	NM_009774	12237	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	protein-coding
chipseq_peak_924	chr1	150877247	150879064	+	0	NA	intron (NM_001024720, intron 1 of 106)	intron (NM_001024720, intron 1 of 106)	115280	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|Gm201	hemicentin 1	protein-coding
chipseq_peak_5953	chr16	73269873	73270877	+	0	NA	Intergenic	Intergenic	607226	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_9298	chr3	141173646	141175101	+	0	NA	Intergenic	Intergenic	37982	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding
chipseq_peak_5367	chr15	87105296	87106202	+	0	NA	Intergenic	Intergenic	-438550	NM_001252310	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding
chipseq_peak_2498	chr11	90083008	90083381	+	0	NA	Intergenic	Intergenic	52846	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding
chipseq_peak_42	chr1	12895203	12895663	+	0	NA	intron (NM_172841, intron 4 of 8)	L1ME3B|LINE|L1	95702	NM_172841	240726	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding
chipseq_peak_3054	chr12	61924071	61926054	+	0	NA	Intergenic	Intergenic	401895	NM_178714	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
chipseq_peak_10753	chr5	84408523	84411028	+	0	NA	intron (NM_007937, intron 1 of 15)	intron (NM_007937, intron 1 of 15)	7607	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_13044	chr8	84835047	84835668	+	0	NA	3' UTR (NM_001297607, exon 9 of 9)	3' UTR (NM_001297607, exon 9 of 9)	3075	NM_183358	102060	Mm.489649	NM_183358		Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding
chipseq_peak_13513	chr9	47659574	47660315	+	0	NA	intron (NM_001025600, intron 1 of 8)	L4_C_Mam|LINE|RTE-X	129592	NM_207675	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding
chipseq_peak_9982	chr4	82879063	82879634	+	0	NA	Intergenic	Intergenic	5803	NM_009887	12622	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1 homolog (Xenopus laevis)	protein-coding
chipseq_peak_3423	chr13	10775117	10775419	+	0	NA	Intergenic	Intergenic	-414465	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding
chipseq_peak_10971	chr5	122566176	122567270	+	0	NA	intron (NM_009879, intron 14 of 18)	intron (NM_009879, intron 14 of 18)	47795	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding
chipseq_peak_11402	chr6	39818905	39819917	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-8475	NM_001010930	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding
chipseq_peak_9756	chr4	43656481	43656840	+	0	NA	promoter-TSS (NM_026871)	promoter-TSS (NM_026871)	-215	NM_026871	68917	Mm.25285	NM_026871	ENSMUSG00000028470	Hint2	1190005L05Rik	histidine triad nucleotide binding protein 2	protein-coding
chipseq_peak_648	chr1	98161474	98162672	+	0	NA	Intergenic	Intergenic	30606	NR_040439	69030	Mm.402692	NR_040439	ENSMUSG00000100182	1810006J02Rik	-	RIKEN cDNA 1810006J02 gene	ncRNA
chipseq_peak_9712	chr4	33789312	33789868	+	0	NA	Intergenic	L1MD|LINE|L1	-135042	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding
chipseq_peak_3304	chr12	98324274	98324571	+	0	NA	Intergenic	Intergenic	55787	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding
chipseq_peak_6343	chr17	62417632	62417876	+	0	NA	Intergenic	Intergenic	463563	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_12741	chr8	36914909	36915706	+	0	NA	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	37135	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding
chipseq_peak_1309	chr10	17467784	17468579	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-255047	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding
chipseq_peak_14154	chrY	90807706	90809553	+	0	NA	intron (NM_133362, intron 2 of 2)	L1_Mm|LINE|L1	23187	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding
chipseq_peak_6077	chr16	84485938	84486437	+	0	NA	Intergenic	Intergenic	115044	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
chipseq_peak_10905	chr5	111749743	111750490	+	0	NA	intron (NR_045833, intron 1 of 4)	intron (NR_045833, intron 1 of 4)	11612	NR_045833	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA
chipseq_peak_5011	chr15	39865029	39865480	+	0	NA	Intergenic	L1MB8|LINE|L1	-7784	NM_022722	64705	Mm.275974	NM_022722	ENSMUSG00000022304	Dpys	1200017I10Rik|1300004I01Rik|DHP|DHPase	dihydropyrimidinase	protein-coding
chipseq_peak_5973	chr16	74238122	74239331	+	0	NA	intron (NM_175549, intron 2 of 27)	intron (NM_175549, intron 2 of 27)	103341	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_9620	chr4	24584123	24584469	+	0	NA	intron (NM_199467, intron 17 of 23)	Charlie1a|DNA|hAT-Charlie	87834	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_4096	chr13	114992317	114992716	+	0	NA	exon (NM_001033228, exon 14 of 29)	exon (NM_001033228, exon 14 of 29)	-60475	NM_008396	16398	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5	integrin alpha 2	protein-coding
chipseq_peak_7661	chr2	46988860	46989360	+	0	NA	Intergenic	Intergenic	1292505	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
chipseq_peak_3742	chr13	79980413	79980781	+	0	NA	Intergenic	Intergenic	-902825	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding
chipseq_peak_528	chr1	75877186	75877867	+	0	NA	Intergenic	Intergenic	331260	NM_009208	20536	Mm.5053	NM_009208		Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding
chipseq_peak_5558	chr16	26305009	26305604	+	0	NA	Intergenic	Intergenic	66533	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding
chipseq_peak_3485	chr13	24067616	24068021	+	0	NA	intron (NM_001311122, intron 27 of 37)	intron (NM_001311122, intron 27 of 37)	-76604	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding
chipseq_peak_8126	chr2	116021503	116022364	+	0	NA	intron (NM_001159567, intron 7 of 12)	RMER12C|LTR|ERVK	42688	NM_001159569	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding
chipseq_peak_6492	chr17	87269373	87269812	+	0	NA	Intergenic	Intergenic	-3645	NM_139295	193813	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding
chipseq_peak_12391	chr7	96575110	96575682	+	0	NA	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	226153	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA
chipseq_peak_13788	chr9	97449564	97450096	+	0	NA	intron (NM_022319, intron 17 of 17)	intron (NM_022319, intron 17 of 17)	-79872	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
chipseq_peak_13804	chr9	100535904	100536346	+	0	NA	intron (NM_010878, intron 1 of 3)	L1M2a|LINE|L1	9928	NM_010878	17973	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding
chipseq_peak_620	chr1	95218816	95219513	+	0	NA	Intergenic	Intergenic	-94464	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding
chipseq_peak_590	chr1	87932939	87933319	+	0	NA	intron (NM_177646, intron 19 of 29)	intron (NM_177646, intron 19 of 29)	75422	NM_001198573	227334	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding
chipseq_peak_13190	chr8	111812686	111813153	+	0	NA	intron (NM_011801, intron 5 of 6)	Charlie1|DNA|hAT-Charlie	41391	NM_011801	23837	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding
chipseq_peak_12460	chr7	115671255	115672146	+	0	NA	intron (NM_001277328, intron 3 of 13)	(CA)n|Simple_repeat|Simple_repeat	129909	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding
chipseq_peak_4218	chr14	28316851	28317109	+	0	NA	intron (NM_177814, intron 15 of 15)	intron (NM_177814, intron 15 of 15)	-188493	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
chipseq_peak_9008	chr3	86806689	86807181	+	0	NA	intron (NM_001195496, intron 9 of 16)	intron (NM_001195496, intron 9 of 16)	113949	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
chipseq_peak_5856	chr16	64212800	64213343	+	0	NA	Intergenic	Intergenic	266063	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding
chipseq_peak_5880	chr16	67102873	67103674	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	446155	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA
chipseq_peak_8946	chr3	81333181	81334118	+	0	NA	Intergenic	Intergenic	297233	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding
chipseq_peak_6327	chr17	58407635	58408544	+	0	NA	intron (NM_001081653, intron 23 of 23)	intron (NM_001081653, intron 23 of 23)	583286	NM_027001	69239	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding
chipseq_peak_4945	chr15	29068904	29069450	+	0	NA	Intergenic	Intergenic	865411	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
chipseq_peak_13934	chr9	116373426	116374551	+	0	NA	Intergenic	Intergenic	-198625	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding
chipseq_peak_5681	chr16	43193775	43194405	+	0	NA	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	-53194	NM_019778	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding
chipseq_peak_11264	chr6	20833542	20834069	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-382304	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding
chipseq_peak_10301	chr5	14662116	14663080	+	0	NA	intron (NM_001110796, intron 3 of 19)	Lx8b|LINE|L1	147680	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding
chipseq_peak_10699	chr5	78622442	78622865	+	0	NA	Intergenic	Intergenic	893251	NR_035474	100316701		NR_035474	ENSMUSG00000089570	Mir669m-1	mmu-mir-669m-1	microRNA 669m-1	ncRNA
chipseq_peak_5448	chr15	101310968	101311323	+	0	NA	Intergenic	Intergenic	17933	NR_033803	77717	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA
chipseq_peak_555	chr1	79437092	79438737	+	0	NA	intron (NM_001310680, intron 1 of 2)	intron (NM_001310680, intron 1 of 2)	2176	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding
chipseq_peak_6642	chr18	22389653	22390549	+	0	NA	intron (NM_001167777, intron 2 of 12)	intron (NM_001167777, intron 2 of 12)	45012	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3 (Drosophila)	protein-coding
chipseq_peak_9391	chr3	151788541	151789554	+	0	NA	Intergenic	Intergenic	-26156	NM_031367	15061	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding
chipseq_peak_5096	chr15	48791058	48793024	+	0	NA	promoter-TSS (NM_001081391)	promoter-TSS (NM_001081391)	-52	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
chipseq_peak_268	chr1	41673994	41677256	+	0	NA	Intergenic	Intergenic	-494373	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_4715	chr14	117346386	117347746	+	0	NA	intron (NM_011821, intron 2 of 8)	(TAA)n|Simple_repeat|Simple_repeat	421769	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_13175	chr8	108236775	108237129	+	0	NA	Intergenic	Intergenic	347725	NR_077224	109215	Mm.65282	NR_077224		Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA
chipseq_peak_1262	chr10	10252990	10253393	+	0	NA	Intergenic	Intergenic	219123	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding
chipseq_peak_6001	chr16	75387585	75389035	+	0	NA	Intergenic	Intergenic	197751	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_1950	chr10	108479394	108479743	+	0	NA	Intergenic	Intergenic	147379	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding
chipseq_peak_10035	chr4	91224125	91224666	+	0	NA	Intergenic	Intergenic	147660	NM_207686	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding
chipseq_peak_2799	chr12	31712248	31713059	+	0	NA	intron (NM_175191, intron 1 of 2)	intron (NM_175191, intron 1 of 2)	1273	NM_175191	73010	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding
chipseq_peak_2708	chr12	13314046	13315452	+	0	NA	intron (NM_027706, intron 12 of 51)	intron (NM_027706, intron 12 of 51)	45622	NM_027706	71169	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding
chipseq_peak_2091	chr10	125884597	125885711	+	0	NA	Intergenic	Intergenic	-81065	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
chipseq_peak_14043	chrX	77323649	77324199	+	0	NA	intron (NR_035475, intron 1 of 3)	intron (NR_035475, intron 1 of 3)	152012	NR_035475	100316834		NR_035475	ENSMUSG00000088980	Mir669m-2	mmu-mir-669m-2	microRNA 669m-2	ncRNA
chipseq_peak_10269	chr5	9912964	9914020	+	0	NA	Intergenic	Intergenic	-188140	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding
chipseq_peak_4160	chr14	14990484	14991018	+	0	NA	intron (NM_001195229, intron 31 of 34)	intron (NM_001195229, intron 31 of 34)	169936	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding
chipseq_peak_1483	chr10	40142353	40142942	+	0	NA	promoter-TSS (NM_028247)	promoter-TSS (NM_028247)	-393	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding
chipseq_peak_10350	chr5	21314560	21315126	+	0	NA	intron (NM_029195, intron 9 of 18)	intron (NM_029195, intron 9 of 18)	-57830	NM_008013	14190	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding
chipseq_peak_10740	chr5	83436328	83436833	+	0	NA	Intergenic	Intergenic	-81385	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding
chipseq_peak_13265	chr8	127783211	127783812	+	0	NA	Intergenic	Intergenic	483859	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_11446	chr6	45490209	45490806	+	0	NA	intron (NM_001004357, intron 1 of 23)	intron (NM_001004357, intron 1 of 23)	430446	NM_001004357	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_5893	chr16	67944341	67944894	+	0	NA	Intergenic	Intergenic	-323709	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_5744	chr16	50065531	50065960	+	0	NA	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	7107	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA
chipseq_peak_12511	chr7	126566433	126566660	+	0	NA	promoter-TSS (NM_146200)	promoter-TSS (NM_146200)	-180	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding
chipseq_peak_4047	chr13	109906223	109906800	+	0	NA	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	2702	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
chipseq_peak_3071	chr12	64917409	64917785	+	0	NA	promoter-TSS (NM_001025605)	promoter-TSS (NM_001025605)	-314	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding
chipseq_peak_2898	chr12	42022123	42022571	+	0	NA	Intergenic	Lx7|LINE|L1	-536290	NM_001271709	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_8122	chr2	115897174	115898058	+	0	NA	intron (NM_001159567, intron 9 of 12)	intron (NM_001159567, intron 9 of 12)	167005	NM_001159569	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding
chipseq_peak_2139	chr11	12838017	12838607	+	0	NA	Intergenic	Intergenic	-373352	NM_001282993	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
chipseq_peak_7060	chr18	89579301	89580289	+	0	NA	intron (NM_001039173, intron 2 of 7)	intron (NM_001039173, intron 2 of 7)	189341	NM_001039173	623279	Mm.447164	NM_001039173		Dok6	Dok-6	docking protein 6	protein-coding
chipseq_peak_9237	chr3	133211726	133212222	+	0	NA	intron (NM_029953, intron 1 of 3)	intron (NM_029953, intron 1 of 3)	22915	NM_029953	77669	Mm.98630	NM_029953	ENSMUSG00000040969	Arhgef38	9130221D24Rik|D630013G24Rik	Rho guanine nucleotide exchange factor (GEF) 38	protein-coding
chipseq_peak_12010	chr6	147247607	147248166	+	0	NA	Intergenic	Intergenic	16127	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding
chipseq_peak_6839	chr18	54072967	54074149	+	0	NA	Intergenic	Intergenic	211445	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
chipseq_peak_227	chr1	38418230	38418864	+	0	NA	intron (NM_001290814, intron 4 of 21)	intron (NM_001290814, intron 4 of 21)	208697	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding
chipseq_peak_3327	chr12	102250447	102250708	+	0	NA	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-32497	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding
chipseq_peak_7653	chr2	45102412	45102845	+	0	NA	intron (NM_001289521, intron 1 of 8)	intron (NM_001289521, intron 1 of 8)	7649	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding
chipseq_peak_10467	chr5	45874761	45876253	+	0	NA	Intergenic	Intergenic	-17967	NM_178142	209707	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding
chipseq_peak_3741	chr13	79783743	79785772	+	0	NA	Intergenic	Intergenic	-1098665	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding
chipseq_peak_6206	chr17	16629875	16630299	+	0	NA	Intergenic	Lx8|LINE|L1	-434016	NM_001163919	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding
chipseq_peak_8917	chr3	79809256	79809632	+	0	NA	Intergenic	Intergenic	33218	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding
chipseq_peak_11336	chr6	32946721	32948154	+	0	NA	intron (NM_025336, intron 4 of 7)	MARNA|DNA|TcMar-Mariner	112715	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
chipseq_peak_547	chr1	78380083	78381450	+	0	NA	intron (NM_001004173, intron 2 of 4)	intron (NM_001004173, intron 2 of 4)	70420	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding
chipseq_peak_10218	chr4	149850567	149851302	+	0	NA	Intergenic	L1M5|LINE|L1	-76667	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding
chipseq_peak_9193	chr3	123580017	123580279	+	0	NA	intron (NR_121616, intron 6 of 13)	intron (NR_121616, intron 6 of 13)	39302	NM_001293682	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding
chipseq_peak_5417	chr15	94967035	94967882	+	0	NA	intron (NM_178789, intron 5 of 7)	ORR1B2|LTR|ERVL-MaLR	181860	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_6579	chr18	11996006	11996445	+	0	NA	intron (NM_001289666, intron 13 of 14)	Tigger12|DNA|TcMar-Tigger	125312	NR_110356	338363	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding
chipseq_peak_7485	chr2	16483944	16484531	+	0	NA	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	127933	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding
chipseq_peak_8553	chr3	28340070	28340538	+	0	NA	intron (NM_001163007, intron 1 of 31)	intron (NM_001163007, intron 1 of 31)	77090	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding
chipseq_peak_5913	chr16	70776275	70776518	+	0	NA	Intergenic	Intergenic	159971	NR_040474	52645	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA
chipseq_peak_13145	chr8	102497105	102497550	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	287784	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_3955	chr13	100892229	100892979	+	0	NA	Intergenic	Intergenic	-59177	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding
chipseq_peak_7564	chr2	38905969	38906516	+	0	NA	intron (NM_010264, intron 1 of 10)	RMER19B|LTR|ERVK	20219	NM_010264	14536	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding
chipseq_peak_11382	chr6	36841166	36845580	+	0	NA	Intergenic	Intergenic	-32012	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_13091	chr8	96227802	96228298	+	0	NA	Intergenic	Intergenic	317923	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_10788	chr5	89825312	89825982	+	0	NA	intron (NM_177872, intron 3 of 21)	L1MDa|LINE|L1	57687	NM_001081401	330119	Mm.133062	NM_177872		Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding
chipseq_peak_11713	chr6	98383141	98386651	+	0	NA	Intergenic	Intergenic	-42142	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_8466	chr3	13503463	13505751	+	0	NA	intron (NM_178631, intron 2 of 9)	intron (NM_178631, intron 2 of 9)	32952	NM_001163328	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding
chipseq_peak_10975	chr5	123140834	123141661	+	0	NA	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	-946	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding
chipseq_peak_5652	chr16	41478302	41480293	+	0	NA	Intergenic	Intergenic	-54045	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_13303	chr9	10268867	10269746	+	0	NA	intron (NM_001170787, intron 3 of 24)	MIR|SINE|MIR	374875	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_10160	chr4	124497686	124498677	+	0	NA	Intergenic	Intergenic	-12222	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA
chipseq_peak_10153	chr4	122909204	122909976	+	0	NA	Intergenic	Intergenic	-23533	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding
chipseq_peak_7354	chr2	4024301	4025322	+	0	NA	Intergenic	Intergenic	116330	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA
chipseq_peak_1205	chr1	193599919	193600203	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-92531	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA
chipseq_peak_8564	chr3	29200676	29201853	+	0	NA	intron (NM_001167748, intron 4 of 12)	intron (NM_001167748, intron 4 of 12)	118687	NM_001167748	75740	Mm.330948	NM_029412	ENSMUSG00000063600	Egfem1	6130401L20Rik|Efcab11	EGF-like and EMI domain containing 1	protein-coding
chipseq_peak_9163	chr3	120473516	120474089	+	0	NA	intron (NR_130170, intron 12 of 18)	intron (NR_130170, intron 12 of 18)	412930	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_1289	chr10	14215660	14216909	+	0	NA	Intergenic	Intergenic	249905	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chipseq_peak_4838	chr15	17154734	17155705	+	0	NA	Intergenic	Intergenic	377118	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_9654	chr4	27945204	27946571	+	0	NA	Intergenic	Intergenic	-867244	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_10716	chr5	81319515	81320077	+	0	NA	intron (NM_198702, intron 4 of 27)	intron (NM_198702, intron 4 of 27)	298203	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_7812	chr2	62547060	62549781	+	0	NA	intron (NM_007986, intron 7 of 25)	intron (NM_007986, intron 7 of 25)	25601	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding
chipseq_peak_11976	chr6	143359431	143359748	+	0	NA	Intergenic	Intergenic	113701	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA
chipseq_peak_4885	chr15	21214841	21215310	+	0	NA	intron (NM_001008420, intron 1 of 11)	AmnSINE1|SINE|Deu	103623	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
chipseq_peak_3397	chr13	6214974	6216007	+	0	NA	Intergenic	L1MB8|LINE|L1	-332667	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding
chipseq_peak_5493	chr16	7780722	7780960	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	644295	NM_029070	74720	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding
chipseq_peak_7547	chr2	35906401	35906811	+	0	NA	intron (NM_029774, intron 3 of 9)	intron (NM_029774, intron 3 of 9)	73018	NM_029774	74410	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding
chipseq_peak_10511	chr5	54582085	54582647	+	0	NA	Intergenic	Intergenic	232374	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
chipseq_peak_4222	chr14	28918838	28919207	+	0	NA	intron (NM_009785, intron 35 of 37)	intron (NM_009785, intron 35 of 37)	-99186	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding
chipseq_peak_11504	chr6	53443598	53444021	+	0	NA	Intergenic	Intergenic	-129565	NM_172728	231991	Mm.321138	NM_172728	ENSMUSG00000053007	Creb5	Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding
chipseq_peak_8255	chr2	140867120	140867543	+	0	NA	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-195855	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_6834	chr18	53798370	53798713	+	0	NA	Intergenic	(TTA)n|Simple_repeat|Simple_repeat	-53994	NM_178686	225523	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding
chipseq_peak_5885	chr16	67515219	67519740	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	103429	NM_001145977	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_8993	chr3	85378983	85379708	+	0	NA	Intergenic	Intergenic	61826	NR_040542	73283	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA
chipseq_peak_4340	chr14	62561652	62562860	+	0	NA	intron (NM_001243857, intron 1 of 3)	intron (NM_001243857, intron 1 of 3)	6519	NM_001243857	629059	Mm.291864	NM_001243857	ENSMUSG00000035184	Fam124a	EG629059	family with sequence similarity 124, member A	protein-coding
chipseq_peak_10575	chr5	62895432	62895753	+	0	NA	Intergenic	Intergenic	81769	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding
chipseq_peak_13411	chr9	29562290	29562806	+	0	NA	intron (NM_172290, intron 1 of 7)	MLT1J2-int|LTR|ERVL-MaLR	400581	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_4753	chr14	123232227	123233371	+	0	NA	Intergenic	Intergenic	63613	NR_045143	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
chipseq_peak_4322	chr14	60219910	60220430	+	0	NA	intron (NM_170591, intron 14 of 14)	intron (NM_170591, intron 14 of 14)	8745	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA
chipseq_peak_12842	chr8	49532815	49534714	+	0	NA	Intergenic	Intergenic	-834348	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
chipseq_peak_8312	chr2	146258828	146259648	+	0	NA	promoter-TSS (NR_040619)	promoter-TSS (NR_040619)	-48	NR_040619	77806	Mm.392819	NR_040619	ENSMUSG00000085958	A930019D19Rik	-	RIKEN cDNA A930019D19 gene	ncRNA
chipseq_peak_12702	chr8	28992496	28993066	+	0	NA	intron (NM_153135, intron 1 of 17)	intron (NM_153135, intron 1 of 17)	226855	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_1783	chr10	91297894	91298202	+	0	NA	Intergenic	Intergenic	-126429	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
chipseq_peak_4075	chr13	112560564	112560933	+	0	NA	intron (NM_139299, intron 3 of 16)	MER21B|LTR|ERVL	19914	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding
chipseq_peak_13970	chrX	15913833	15914418	+	0	NA	Intergenic	Intergenic	-608744	NM_025738	66742	Mm.45302	NM_025738	ENSMUSG00000023257	Cypt1	4931420D14Rik|Ckt1r3|Cypt5|Cypt6|TISP55	cysteine-rich perinuclear theca 1	protein-coding
chipseq_peak_4430	chr14	76778490	76778935	+	0	NA	Intergenic	Intergenic	101144	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA
chipseq_peak_6953	chr18	67738107	67738924	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-13894	NM_001127177	19255	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding
chipseq_peak_11207	chr6	14059320	14060466	+	0	NA	Intergenic	Intergenic	188324	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
chipseq_peak_9061	chr3	106557028	106557360	+	0	NA	intron (NM_001025582, intron 3 of 6)	B3A|SINE|B2	-9392	NM_001293694	99712	Mm.486418	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding
chipseq_peak_7044	chr18	85938943	85939694	+	0	NA	Intergenic	Intergenic	-455634	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chipseq_peak_2285	chr11	39524647	39525994	+	0	NA	Intergenic	Intergenic	-135095	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_619	chr1	95048124	95049323	+	0	NA	Intergenic	Intergenic	251281	NR_040473	74689	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA
chipseq_peak_13518	chr9	48197521	48198568	+	0	NA	Intergenic	Intergenic	142854	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding
chipseq_peak_5163	chr15	57884548	57884880	+	0	NA	intron (NM_024207, intron 1 of 7)	L1ME4b|LINE|L1	7704	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding
chipseq_peak_4560	chr14	94315827	94316384	+	0	NA	Intergenic	Intergenic	-425436	NM_001271798	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_11076	chr5	140940822	140941376	+	0	NA	intron (NM_175362, intron 1 of 24)	intron (NM_175362, intron 1 of 24)	59497	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding
chipseq_peak_3587	chr13	45750621	45751270	+	0	NA	intron (NM_009124, intron 4 of 7)	intron (NM_009124, intron 4 of 7)	214046	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding
chipseq_peak_4494	chr14	86748058	86751151	+	0	NA	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	391510	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
chipseq_peak_1802	chr10	93122929	93123810	+	0	NA	Intergenic	PB1D10|SINE|Alu	-37507	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding
chipseq_peak_13366	chr9	26375067	26375522	+	0	NA	Intergenic	Intergenic	-358514	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding
chipseq_peak_10576	chr5	62997063	62997399	+	0	NA	Intergenic	L1MD2|LINE|L1	183408	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding
chipseq_peak_14102	chrX	156841965	156842755	+	0	NA	Intergenic	Intergenic	302877	NR_033598	74941	Mm.484588	NR_033598		4930503H13Rik	-	gem (nuclear organelle) associated protein 8 pseudogene	pseudo
chipseq_peak_1859	chr10	99375861	99377189	+	0	NA	Intergenic	Intergenic	113294	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chipseq_peak_316	chr1	48275904	48276794	+	0	NA	Intergenic	Intergenic	-809224	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_3654	chr13	57949756	57950093	+	0	NA	Intergenic	Intergenic	-41592	NM_009262	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding
chipseq_peak_10143	chr4	119460870	119461568	+	0	NA	Intergenic	Intergenic	31379	NM_177572	194237	Mm.206201	NM_177572	ENSMUSG00000048899	Rimkla	B930030J24|NAAGS|NAAGS-II|Rimk	ribosomal modification protein rimK-like family member A	protein-coding
chipseq_peak_13224	chr8	118415259	118416165	+	0	NA	intron (NM_019707, intron 1 of 13)	intron (NM_019707, intron 1 of 13)	132101	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding
chipseq_peak_9348	chr3	148612280	148612543	+	0	NA	Intergenic	Intergenic	342224	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
chipseq_peak_1468	chr10	38553539	38555382	+	0	NA	Intergenic	Intergenic	267319	NM_001177783	215919	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding
chipseq_peak_1673	chr10	68908922	68909704	+	0	NA	Intergenic	Intergenic	185567	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding
chipseq_peak_6510	chr17	89119223	89119809	+	0	NA	intron (NM_013523, intron 1 of 9)	intron (NM_013523, intron 1 of 9)	81159	NM_013523	14309	Mm.57155	NM_013523	ENSMUSG00000032937	Fshr	-	follicle stimulating hormone receptor	protein-coding
chipseq_peak_294	chr1	43877089	43877785	+	0	NA	Intergenic	Intergenic	-49729	NM_026430	67883	Mm.387202	NM_026430		Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding
chipseq_peak_2755	chr12	26488354	26488660	+	0	NA	Intergenic	Intergenic	19292	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
chipseq_peak_2773	chr12	27698122	27698482	+	0	NA	Intergenic	L1MC|LINE|L1	-355584	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding
chipseq_peak_9871	chr4	70500080	70500520	+	0	NA	intron (NM_172694, intron 1 of 5)	L1MC4a|LINE|L1	34628	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
chipseq_peak_13618	chr9	60873077	60873936	+	0	NA	intron (NM_028283, intron 16 of 18)	B3|SINE|B2	78958	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
chipseq_peak_9555	chr4	16568603	16570154	+	0	NA	Intergenic	Intergenic	405268	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA
chipseq_peak_8047	chr2	105304158	105304441	+	0	NA	intron (NM_001159638, intron 2 of 2)	intron (NM_001159638, intron 2 of 2)	79957	NM_028747	74088	Mm.46188	NM_028747	ENSMUSG00000055312	Them7	0610012H03Rik	thioesterase superfamily member 7	protein-coding
chipseq_peak_8817	chr3	66108635	66109405	+	0	NA	intron (NM_145820, intron 11 of 13)	intron (NM_145820, intron 11 of 13)	-110867	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding
chipseq_peak_8560	chr3	28550509	28551244	+	0	NA	intron (NM_001163007, intron 7 of 31)	intron (NM_001163007, intron 7 of 31)	130933	NR_130342	100628591		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA
chipseq_peak_9122	chr3	117686075	117687126	+	0	NA	intron (NM_001305451, intron 5 of 5)	intron (NM_001305451, intron 5 of 5)	111373	NM_029425	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding
chipseq_peak_11812	chr6	106809333	106809641	+	0	NA	Intergenic	Intergenic	-9400	NM_021449	58799	Mm.290085	NM_021449		Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding
chipseq_peak_8103	chr2	113779297	113779655	+	0	NA	intron (NM_009162, intron 5 of 5)	intron (NM_009162, intron 5 of 5)	-20828	NM_011824	23892	Mm.166318	NM_011824		Grem1	Cktsf1b1|Drm|Grem|ld	gremlin 1	protein-coding
chipseq_peak_10820	chr5	97641037	97642821	+	0	NA	Intergenic	Intergenic	-184921	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding
chipseq_peak_4420	chr14	76473447	76473717	+	0	NA	intron (NM_001310646, intron 3 of 4)	intron (NM_001310646, intron 3 of 4)	-14854	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding
chipseq_peak_6400	chr17	69736395	69737158	+	0	NA	Intergenic	Intergenic	297450	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
chipseq_peak_7008	chr18	74215763	74216419	+	0	NA	promoter-TSS (NM_028868)	promoter-TSS (NM_028868)	-121	NM_028868	74322	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding
chipseq_peak_10994	chr5	126945980	126946490	+	0	NA	Intergenic	Intergenic	-84554	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA
chipseq_peak_183	chr1	32432785	32433518	+	0	NA	intron (NM_133235, intron 4 of 8)	intron (NM_133235, intron 4 of 8)	87848	NM_001199956	408192	Mm.485769	NM_001199956		Gm9839	ENSMUSG00000049830|Senp15	predicted gene 9839	protein-coding
chipseq_peak_1515	chr10	45813760	45814107	+	0	NA	intron (NR_040624, intron 1 of 2)	intron (NR_040624, intron 1 of 2)	6229	NR_040624	320363	Mm.123343	NR_040624		D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA
chipseq_peak_9084	chr3	111938270	111938801	+	0	NA	intron (NR_045362, intron 1 of 3)	intron (NR_045362, intron 1 of 3)	56632	NR_045362	625585	Mm.389497	NR_045362	ENSMUSG00000104543	Gm6602	-	predicted gene 6602	ncRNA
chipseq_peak_3005	chr12	55720395	55720652	+	0	NA	intron (NM_001003719, intron 17 of 39)	intron (NM_001003719, intron 17 of 39)	100993	NM_001112714	56784	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding
chipseq_peak_1208	chr1	193702993	193703399	+	0	NA	Intergenic	Intergenic	-195666	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA
chipseq_peak_13945	chr9	120438828	120439205	+	0	NA	intron (NM_144557, intron 10 of 16)	intron (NM_144557, intron 10 of 16)	-53590	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding
chipseq_peak_5220	chr15	63768812	63769316	+	0	NA	Intergenic	Intergenic	39675	NM_031378	83492	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding
chipseq_peak_14130	chrX	164313826	164314444	+	0	NA	intron (NM_027153, intron 5 of 9)	intron (NM_027153, intron 5 of 9)	44704	NM_027153	69656	Mm.293463	NM_027153	ENSMUSG00000031379	Pir	2310042L19Rik|Pirnl	pirin	protein-coding
chipseq_peak_12467	chr7	117153667	117154567	+	0	NA	Intergenic	Intergenic	-226862	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_3508	chr13	29332683	29333374	+	0	NA	intron (NM_144536, intron 15 of 15)	intron (NM_144536, intron 15 of 15)	316773	NR_045073	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
chipseq_peak_2546	chr11	103267371	103267789	+	0	NA	promoter-TSS (NM_016896)	promoter-TSS (NM_016896)	-179	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding
chipseq_peak_6119	chr16	94718892	94719287	+	0	NA	Intergenic	Intergenic	137601	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
chipseq_peak_9322	chr3	143981870	143983185	+	0	NA	Intergenic	Intergenic	219805	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding
chipseq_peak_5291	chr15	70279009	70280185	+	0	NA	Intergenic	L1MA7|LINE|L1	355364	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_11484	chr6	50294082	50294385	+	0	NA	3' UTR (NM_027881, exon 22 of 22)	3' UTR (NM_027881, exon 22 of 22)	-32464	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding
chipseq_peak_6393	chr17	68863811	68864477	+	0	NA	Intergenic	Intergenic	27008	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding
chipseq_peak_12122	chr7	54594794	54596190	+	0	NA	Intergenic	Intergenic	-239753	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_4044	chr13	109717986	109718556	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-185538	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
chipseq_peak_3227	chr12	82569347	82569935	+	0	NA	Intergenic	Intergenic	-47284	NM_015812	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding
chipseq_peak_3298	chr12	97326144	97327078	+	0	NA	Intergenic	Intergenic	932848	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding
chipseq_peak_599	chr1	89390742	89391222	+	0	NA	intron (NR_040482, intron 1 of 2)	intron (NR_040482, intron 1 of 2)	15151	NR_040482	77331	Mm.374962	NR_040482	ENSMUSG00000099938	C030007H22Rik	-	RIKEN cDNA C030007H22 gene	ncRNA
chipseq_peak_7569	chr2	39373042	39373354	+	0	NA	Intergenic	Intergenic	-146860	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding
chipseq_peak_10720	chr5	81412860	81413384	+	0	NA	intron (NM_198702, intron 6 of 27)	intron (NM_198702, intron 6 of 27)	391529	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_5561	chr16	26634769	26635131	+	0	NA	intron (NM_134103, intron 2 of 7)	intron (NM_134103, intron 2 of 7)	53245	NM_008364	16180	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding
chipseq_peak_8457	chr3	11155378	11155668	+	0	NA	Intergenic	B3|SINE|B2	688836	NR_040751	100038545	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	ENSMUSG00000074696	predicted gene 10745	ncRNA
chipseq_peak_7797	chr2	61967486	61968735	+	0	NA	Intergenic	Intergenic	-78405	NM_001242380	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding
chipseq_peak_2676	chr12	9001675	9002382	+	0	NA	intron (NM_172470, intron 12 of 27)	intron (NM_172470, intron 12 of 27)	-27969	NM_029321	75516	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding
chipseq_peak_9544	chr4	15139720	15140367	+	0	NA	intron (NM_178617, intron 2 of 12)	intron (NM_178617, intron 2 of 12)	9088	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding
chipseq_peak_12295	chr7	89170961	89171260	+	0	NA	intron (NM_028343, intron 6 of 14)	intron (NM_028343, intron 6 of 14)	167677	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding
chipseq_peak_3537	chr13	37969542	37970423	+	0	NA	Intergenic	Intergenic	24208	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding
chipseq_peak_9875	chr4	70804563	70805287	+	0	NA	Intergenic	Intergenic	-269997	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
chipseq_peak_2381	chr11	65745753	65746163	+	0	NA	intron (NM_009157, intron 2 of 10)	intron (NM_009157, intron 2 of 10)	-11126	NR_030417	791070		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA
chipseq_peak_11465	chr6	47307017	47307263	+	0	NA	Intergenic	Intergenic	62744	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_7263	chr19	45472038	45473439	+	0	NA	intron (NM_001286466, intron 4 of 13)	intron (NM_001286466, intron 4 of 13)	87805	NM_020032	56626	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding
chipseq_peak_4692	chr14	115173733	115174156	+	0	NA	intron (NM_175500, intron 2 of 7)	intron (NM_175500, intron 2 of 7)	81729	NM_175500	103978	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding
chipseq_peak_6201	chr17	14908779	14909076	+	0	NA	intron (NM_175173, intron 16 of 24)	intron (NM_175173, intron 16 of 24)	34197	NM_175173	71682	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding
chipseq_peak_9158	chr3	119955627	119956643	+	0	NA	Intergenic	Intergenic	-172747	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
chipseq_peak_8962	chr3	82106536	82107010	+	0	NA	promoter-TSS (NR_105977)	promoter-TSS (NR_105977)	-464	NR_105977	102466991		NR_105977	ENSMUSG00000098712	Mir7010	Gm28029|mmu-mir-7010	microRNA 7010	ncRNA
chipseq_peak_13668	chr9	70696928	70697328	+	0	NA	intron (NM_007399, intron 1 of 15)	intron (NM_007399, intron 1 of 15)	18127	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding
chipseq_peak_1393	chr10	27804857	27805188	+	0	NA	Intergenic	Intergenic	-188080	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding
chipseq_peak_1142	chr1	181221989	181222324	+	0	NA	Intergenic	L1MC5a|LINE|L1	-10178	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding
chipseq_peak_12429	chr7	110740132	110740822	+	0	NA	Intergenic	Intergenic	-27729	NM_001276301	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding
chipseq_peak_10724	chr5	81821762	81822210	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	800393	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_10266	chr5	8309872	8310366	+	0	NA	intron (NM_001310440, intron 3 of 30)	intron (NM_001310440, intron 3 of 30)	58041	NM_001310440	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding
chipseq_peak_12369	chr7	93467010	93467515	+	0	NA	Intergenic	Intergenic	387383	NM_021427	58238	Mm.113787	NM_021427		Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding
chipseq_peak_6514	chr17	90044641	90045450	+	0	NA	intron (NM_020252, intron 22 of 22)	intron (NM_020252, intron 22 of 22)	665804	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
chipseq_peak_13800	chr9	98010615	98012503	+	0	NA	non-coding (NR_110443, exon 2 of 2)	non-coding (NR_110443, exon 2 of 2)	8139	NR_110443	66737	Mm.445908	NR_110443	ENSMUSG00000090255	4921534H16Rik	-	RIKEN cDNA 4921534H16 gene	ncRNA
chipseq_peak_6696	chr18	29663390	29663722	+	0	NA	Intergenic	Intergenic	-167140	NR_045391	78058	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA
chipseq_peak_8834	chr3	68126342	68126892	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	61815	NM_001113421	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_2490	chr11	87461540	87462957	+	0	NA	intron (NM_031386, intron 2 of 30)	CpG	34657	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding
chipseq_peak_7262	chr19	45461123	45461957	+	0	NA	intron (NM_001037758, intron 3 of 14)	intron (NM_001037758, intron 3 of 14)	97806	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding
chipseq_peak_10298	chr5	14218536	14218992	+	0	NA	intron (NM_011348, intron 5 of 16)	intron (NM_011348, intron 5 of 16)	193488	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding
chipseq_peak_4827	chr15	15237680	15239185	+	0	NA	Intergenic	Intergenic	-1539669	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_7161	chr19	24453068	24453749	+	0	NA	intron (NM_008846, intron 1 of 14)	intron (NM_008846, intron 1 of 14)	24066	NM_026520	68034	Mm.440181	NM_026520		Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding
chipseq_peak_4328	chr14	60501986	60503164	+	0	NA	Intergenic	Intergenic	124289	NM_028113	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding
chipseq_peak_13441	chr9	33826132	33826489	+	0	NA	Intergenic	Intergenic	-216061	NR_040744	77119	Mm.367930	NR_040744	ENSMUSG00000098758	7630403G23Rik	-	RIKEN cDNA 7630403G23 gene	ncRNA
chipseq_peak_1759	chr10	88171813	88172611	+	0	NA	intron (NM_028334, intron 6 of 9)	intron (NM_028334, intron 6 of 9)	25141	NM_028334	69736	Mm.222184	NM_027191	ENSMUSG00000035351	Nup37	2410003L22Rik|2810039M17Rik	nucleoporin 37	protein-coding
chipseq_peak_568	chr1	82791143	82791647	+	0	NA	Intergenic	Intergenic	-22939	NM_025453	66261	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding
chipseq_peak_1953	chr10	108721758	108722553	+	0	NA	intron (NM_001252342, intron 3 of 10)	intron (NM_001252342, intron 3 of 10)	-21995	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding
chipseq_peak_3321	chr12	100568446	100570897	+	0	NA	intron (NM_153587, intron 14 of 17)	B2_Mm2|SINE|B2	-48849	NM_001033213	104718	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding
chipseq_peak_4126	chr14	8095009	8095256	+	0	NA	Intergenic	Intergenic	-3081	NM_145458	218699	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|MONaKA	PX domain containing serine/threonine kinase	protein-coding
chipseq_peak_4750	chr14	123032970	123033629	+	0	NA	Intergenic	Intergenic	-50038	NM_028651	70551	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding
chipseq_peak_12659	chr8	16276330	16276788	+	0	NA	intron (NM_053171, intron 11 of 69)	intron (NM_053171, intron 11 of 69)	-107721	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_1895	chr10	102491897	102492229	+	0	NA	Intergenic	Intergenic	-1645	NM_024435	67405	Mm.64201	NM_024435	ENSMUSG00000019890	Nts	5033428E16Rik|NMN-125|NN|NT|NT/N|NTS1	neurotensin	protein-coding
chipseq_peak_9106	chr3	116984888	116986403	+	0	NA	Intergenic	Intergenic	-16693	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding
chipseq_peak_8367	chr2	162300009	162300678	+	0	NA	intron (NM_001291150, intron 2 of 30)	HAL1b|LINE|L1	-90470	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA
chipseq_peak_13362	chr9	25219027	25220231	+	0	NA	Intergenic	Intergenic	-32810	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding
chipseq_peak_3735	chr13	78638262	78638932	+	0	NA	Intergenic	Intergenic	-439615	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding
chipseq_peak_7009	chr18	74887866	74888298	+	0	NA	Intergenic	Intergenic	73181	NM_010720	16891	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding
chipseq_peak_10289	chr5	13440903	13441578	+	0	NA	intron (NM_009152, intron 1 of 16)	intron (NM_009152, intron 1 of 16)	41931	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
chipseq_peak_4323	chr14	60405647	60406186	+	0	NA	Intergenic	Intergenic	27630	NM_028113	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding
chipseq_peak_4003	chr13	107218325	107218837	+	0	NA	Intergenic	Intergenic	196011	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA
chipseq_peak_4085	chr13	113734250	113734601	+	0	NA	Intergenic	Intergenic	-60083	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding
chipseq_peak_13600	chr9	59139475	59140074	+	0	NA	Intergenic	Intergenic	-103333	NM_001042752	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding
chipseq_peak_9602	chr4	23635479	23638187	+	0	NA	Intergenic	Intergenic	-859629	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_9588	chr4	20588702	20589776	+	0	NA	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	189429	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding
chipseq_peak_11844	chr6	110837068	110837443	+	0	NA	intron (NM_177328, intron 1 of 9)	intron (NM_177328, intron 1 of 9)	191657	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_13174	chr8	108024242	108024630	+	0	NA	Intergenic	Intergenic	-435954	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding
chipseq_peak_1955	chr10	108800805	108801137	+	0	NA	intron (NM_001252342, intron 3 of 10)	intron (NM_001252342, intron 3 of 10)	-100811	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding
chipseq_peak_3963	chr13	101286628	101288073	+	0	NA	intron (NR_045846, intron 5 of 5)	intron (NR_045846, intron 5 of 5)	33031	NR_045846	71174	Mm.399537	NR_045846		4933416M06Rik	-	RIKEN cDNA 4933416M06 gene	ncRNA
chipseq_peak_10251	chr5	5431515	5432577	+	0	NA	Intergenic	Intergenic	47097	NM_001200025	381716	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding
chipseq_peak_10555	chr5	60967103	60968338	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-841123	NM_019468	14380	Mm.347430	NM_019468		G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding
chipseq_peak_2266	chr11	37936687	37937255	+	0	NA	Intergenic	Intergenic	277982	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	OTTMUSG00000005422	predicted gene 12128	ncRNA
chipseq_peak_12425	chr7	109270956	109271826	+	0	NA	Intergenic	Intergenic	-96184	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding
chipseq_peak_9476	chr4	7542532	7543075	+	0	NA	Intergenic	Intergenic	-17885	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA
chipseq_peak_8713	chr3	53525859	53526208	+	0	NA	intron (NM_172862, intron 16 of 23)	intron (NM_172862, intron 16 of 23)	37240	NM_153156	229277	Mm.222810	NM_153156		Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding
chipseq_peak_12541	chr7	132264844	132265704	+	0	NA	intron (NM_029935, intron 4 of 7)	intron (NM_029935, intron 4 of 7)	-50390	NR_028578	100043682	Mm.482794	NR_028578		Gm10584	ENSMUSG00000073814	predicted gene 10584	ncRNA
chipseq_peak_2555	chr11	105517032	105517377	+	0	NA	Intergenic	L1MC4|LINE|L1	-60469	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding
chipseq_peak_6925	chr18	66104284	66104536	+	0	NA	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	-101775	NM_027400	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding
chipseq_peak_9026	chr3	97507005	97507534	+	0	NA	Intergenic	Intergenic	-96090	NM_146275	258272	Mm.377406	NM_146275	ENSMUSG00000051392	Olfr1402	MOR217-1	olfactory receptor 1402	protein-coding
chipseq_peak_4927	chr15	26335850	26336089	+	0	NA	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	26921	NM_001310774	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding
chipseq_peak_10371	chr5	25420564	25421019	+	0	NA	intron (NM_001081383, intron 2 of 58)	intron (NM_001081383, intron 2 of 58)	77992	NM_001081383	231051	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding
chipseq_peak_9373	chr3	150649736	150650536	+	0	NA	Intergenic	Intergenic	-787746	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_4093	chr13	114793253	114793683	+	0	NA	Intergenic	Intergenic	-24769	NM_013826	17434	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding
chipseq_peak_9746	chr4	39292467	39292904	+	0	NA	Intergenic	Intergenic	-157608	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
chipseq_peak_10050	chr4	94357011	94357271	+	0	NA	Intergenic	L2b|LINE|L2	199655	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
chipseq_peak_1827	chr10	96545584	96546332	+	0	NA	Intergenic	Intergenic	-71043	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding
chipseq_peak_11478	chr6	49893883	49894168	+	0	NA	Intergenic	Intergenic	71315	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding
chipseq_peak_11507	chr6	54210705	54211186	+	0	NA	intron (NM_001163640, intron 3 of 12)	intron (NM_001163640, intron 3 of 12)	-53913	NM_001311133	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding
chipseq_peak_4079	chr13	113409700	113410204	+	0	NA	Intergenic	Intergenic	92892	NR_045501	70917	Mm.491036	NR_045501		4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA
chipseq_peak_5521	chr16	18166743	18167663	+	0	NA	Intergenic	Intergenic	-2033	NR_105785	102465189		NR_105785	ENSMUSG00000099293	Mir6366	Gm27720|mmu-mir-6366	microRNA 6366	ncRNA
chipseq_peak_12409	chr7	99980439	99980901	+	0	NA	promoter-TSS (NM_175388)	promoter-TSS (NM_175388)	-212	NM_175388	108937	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding
chipseq_peak_2879	chr12	39685321	39685837	+	0	NA	Intergenic	Intergenic	351797	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
chipseq_peak_3128	chr12	70656543	70657668	+	0	NA	intron (NR_037248, intron 4 of 4)	intron (NR_037248, intron 4 of 4)	-168409	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding
chipseq_peak_9781	chr4	48923827	48925270	+	0	NA	Intergenic	Intergenic	-134914	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding
chipseq_peak_4007	chr13	107489296	107489605	+	0	NA	Intergenic	Intergenic	19628	NR_045084	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA
chipseq_peak_8234	chr2	139207478	139208467	+	0	NA	Intergenic	Intergenic	-285948	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding
chipseq_peak_3598	chr13	46129427	46129979	+	0	NA	Intergenic	Intergenic	-144018	NM_001005422	380842	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding
chipseq_peak_6881	chr18	56048291	56049411	+	0	NA	Intergenic	Intergenic	-383281	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
chipseq_peak_11706	chr6	98223850	98224499	+	0	NA	Intergenic	Intergenic	118580	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_10647	chr5	71842188	71842750	+	0	NA	intron (NM_008069, intron 3 of 8)	intron (NM_008069, intron 3 of 8)	142453	NM_008069	14400	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding
chipseq_peak_13773	chr9	94838600	94840548	+	0	NA	intron (NM_177909, intron 5 of 15)	intron (NM_177909, intron 5 of 15)	87745	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA
chipseq_peak_13409	chr9	29390422	29391126	+	0	NA	intron (NM_172290, intron 2 of 7)	intron (NM_172290, intron 2 of 7)	572355	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_11881	chr6	117355916	117356564	+	0	NA	Intergenic	Intergenic	187705	NM_001012477	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding
chipseq_peak_9912	chr4	76154726	76155076	+	0	NA	intron (NM_011211, intron 13 of 39)	intron (NM_011211, intron 13 of 39)	-876615	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_2543	chr11	102864240	102864578	+	0	NA	intron (NM_001109995, intron 9 of 27)	intron (NM_001109995, intron 9 of 27)	16566	NM_001109995	20624	Mm.873	NM_011431	ENSMUSG00000020929	Eftud2	116kDa|Snrp116|U5-116kD	elongation factor Tu GTP binding domain containing 2	protein-coding
chipseq_peak_10100	chr4	104269343	104271234	+	0	NA	Intergenic	Intergenic	-97250	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
chipseq_peak_2074	chr10	124570685	124571495	+	0	NA	Intergenic	Intergenic	102016	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo
chipseq_peak_12407	chr7	99275069	99275627	+	0	NA	intron (NM_001048167, intron 1 of 2)	intron (NM_001048167, intron 1 of 2)	7002	NM_001043355	17760	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding
chipseq_peak_11944	chr6	138412058	138412449	+	0	NA	intron (NM_207222, intron 3 of 4)	intron (NM_207222, intron 3 of 4)	-10852	NR_126073	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA
chipseq_peak_7856	chr2	67106987	67107834	+	0	NA	Intergenic	Intergenic	-66424	NM_001033477	383709	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding
chipseq_peak_7655	chr2	45147273	45147555	+	0	NA	Intergenic	Intergenic	-34135	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding
chipseq_peak_2533	chr11	101641066	101643101	+	0	NA	Intergenic	Intergenic	14134	NM_025654	66599	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding
chipseq_peak_11544	chr6	59418901	59419584	+	0	NA	intron (NM_183183, intron 1 of 1)	intron (NM_183183, intron 1 of 1)	7048	NM_183183	243385	Mm.138080	NM_183183		Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding
chipseq_peak_1055	chr1	172027643	172028122	+	0	NA	promoter-TSS (NM_033509)	promoter-TSS (NM_033509)	-587	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding
chipseq_peak_1747	chr10	85673388	85674061	+	0	NA	Intergenic	Intergenic	75313	NM_001017525	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding
chipseq_peak_4466	chr14	80432864	80433312	+	0	NA	Intergenic	Intergenic	432786	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_11551	chr6	61301619	61301988	+	0	NA	intron (NM_183310, intron 1 of 10)	intron (NM_183310, intron 1 of 10)	-120993	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
chipseq_peak_6948	chr18	67535974	67537260	+	0	NA	intron (NM_176832, intron 2 of 13)	intron (NM_176832, intron 2 of 13)	12556	NM_176832	68166	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire homolog 1 (Drosophila)	protein-coding
chipseq_peak_1250	chr10	9428688	9430055	+	0	NA	Intergenic	Intergenic	245837	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
chipseq_peak_7838	chr2	65831985	65833338	+	0	NA	Intergenic	Intergenic	-13106	NM_153409	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding
chipseq_peak_11997	chr6	144753229	144753955	+	0	NA	Intergenic	Intergenic	80724	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA
chipseq_peak_3561	chr13	42839476	42839701	+	0	NA	intron (NM_001302635, intron 3 of 13)	intron (NM_001302635, intron 3 of 13)	-26659	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_5583	chr16	30379210	30379969	+	0	NA	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	8941	NM_001128094	224088	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding
chipseq_peak_1637	chr10	65897263	65898135	+	0	NA	Intergenic	Intergenic	226365	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA
chipseq_peak_2983	chr12	51294691	51295516	+	0	NA	Intergenic	Intergenic	-53127	NM_001167964	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding
chipseq_peak_7648	chr2	44979416	44979641	+	0	NA	Intergenic	Intergenic	43649	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA
chipseq_peak_1166	chr1	187781750	187782384	+	0	NA	intron (NM_001243792, intron 1 of 7)	intron (NM_001243792, intron 1 of 7)	173061	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding
chipseq_peak_5996	chr16	75343398	75343917	+	0	NA	Intergenic	L2a|LINE|L2	242404	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_12971	chr8	67389621	67391041	+	0	NA	Intergenic	Intergenic	-100427	NM_008673	17960	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding
chipseq_peak_12366	chr7	92896125	92896424	+	0	NA	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	21021	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding
chipseq_peak_448	chr1	63965396	63965886	+	0	NA	intron (NR_027824, intron 1 of 1)	intron (NR_027824, intron 1 of 1)	914	NR_027824	433315	Mm.342696	NM_001013800	ENSMUSG00000044689	Gm13749	OTTMUSG00000013918	predicted gene 13749	ncRNA
chipseq_peak_13077	chr8	90912499	90912795	+	0	NA	intron (NM_177224, intron 2 of 39)	tRNA-Ala-GCA|tRNA|tRNA	-19602	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding
chipseq_peak_2518	chr11	96465530	96466012	+	0	NA	intron (NM_001033186, intron 1 of 12)	intron (NM_001033186, intron 1 of 12)	1180	NM_001177899	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding
chipseq_peak_5490	chr16	7018229	7019027	+	0	NA	intron (NM_021477, intron 5 of 16)	intron (NM_021477, intron 5 of 16)	-51207	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_13315	chr9	13627106	13627487	+	0	NA	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	7307	NM_001013813	270118	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like 2 (Drosophila)	protein-coding
chipseq_peak_11903	chr6	122697447	122697763	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-9884	NM_001289831	71950	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding
chipseq_peak_9031	chr3	99515596	99516089	+	0	NA	Intergenic	Intergenic	262082	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding
chipseq_peak_5287	chr15	69695562	69696369	+	0	NA	Intergenic	Intergenic	-228268	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_1662	chr10	68164246	68166283	+	0	NA	intron (NM_023598, intron 4 of 9)	AT_rich|Low_complexity|Low_complexity	113462	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding
chipseq_peak_3858	chr13	89669384	89670060	+	0	NA	intron (NM_001134474, intron 11 of 13)	intron (NM_001134474, intron 11 of 13)	72790	NM_019389	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding
chipseq_peak_11340	chr6	33060194	33060527	+	0	NA	promoter-TSS (NM_025336)	promoter-TSS (NM_025336)	-208	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
chipseq_peak_11956	chr6	139713968	139714462	+	0	NA	Intergenic	Intergenic	-1644	NM_207683	18705	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	protein-coding
chipseq_peak_1638	chr10	65931849	65932412	+	0	NA	Intergenic	Intergenic	191934	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA
chipseq_peak_4658	chr14	111715662	111715935	+	0	NA	Intergenic	Intergenic	40683	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding
chipseq_peak_9616	chr4	24241991	24243347	+	0	NA	Intergenic	Intergenic	-253793	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_10645	chr5	71777792	71779493	+	0	NA	intron (NM_008069, intron 3 of 8)	intron (NM_008069, intron 3 of 8)	78626	NM_008069	14400	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding
chipseq_peak_9024	chr3	96262741	96263662	+	0	NA	exon (NM_033596, exon 1 of 1)	exon (NM_033596, exon 1 of 1)	116	NM_033596	97122	Mm.227295	NM_033596		Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding
chipseq_peak_10613	chr5	66953491	66954602	+	0	NA	intron (NM_001001980, intron 4 of 25)	intron (NM_001001980, intron 4 of 25)	-14370	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding
chipseq_peak_1878	chr10	100795260	100796118	+	0	NA	Intergenic	Intergenic	203303	NM_001081246	66605	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding
chipseq_peak_1035	chr1	169156021	169156694	+	0	NA	Intergenic	Intergenic	375107	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
chipseq_peak_9595	chr4	22834608	22835085	+	0	NA	Intergenic	Intergenic	344298	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
chipseq_peak_211	chr1	35107158	35107650	+	0	NA	Intergenic	L1MB7|LINE|L1	257445	NM_175421	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding
chipseq_peak_4127	chr14	8510430	8511978	+	0	NA	intron (NM_028934, intron 11 of 15)	intron (NM_028934, intron 11 of 15)	-132441	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding
chipseq_peak_9908	chr4	75744155	75745279	+	0	NA	Intergenic	Intergenic	-466431	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_2590	chr11	110803589	110804996	+	0	NA	Intergenic	Intergenic	-163741	NM_010604	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
chipseq_peak_12300	chr7	89499335	89500292	+	0	NA	Intergenic	Intergenic	17773	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding
chipseq_peak_10529	chr5	57109213	57109826	+	0	NA	Intergenic	Intergenic	608400	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_11998	chr6	144814403	144815267	+	0	NA	Intergenic	Intergenic	141967	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA
chipseq_peak_4378	chr14	67180845	67181366	+	0	NA	Intergenic	L1ME1|LINE|L1	-52187	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding
chipseq_peak_1717	chr10	74053092	74053628	+	0	NA	intron (NM_001142735, intron 3 of 32)	intron (NM_001142735, intron 3 of 32)	231493	NM_001142738	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
chipseq_peak_652	chr1	98350175	98350927	+	0	NA	Intergenic	Intergenic	-70573	NM_001164233	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding
chipseq_peak_6207	chr17	17402405	17402870	+	0	NA	promoter-TSS (NM_025681)	promoter-TSS (NM_025681)	-49	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb expression 1 homolog (chicken)	protein-coding
chipseq_peak_9353	chr3	149216264	149217418	+	0	NA	Intergenic	Intergenic	-57896	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_1443	chr10	33588757	33590286	+	0	NA	intron (NM_175448, intron 3 of 5)	intron (NM_175448, intron 3 of 5)	35079	NM_175448	215890	Mm.94461	NM_175448	ENSMUSG00000019785	Clvs2	A330019N05Rik|Rlbp1l2	clavesin 2	protein-coding
chipseq_peak_12583	chr8	6179633	6179976	+	0	NA	Intergenic	Intergenic	-1074572	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_3894	chr13	93122284	93122693	+	0	NA	intron (NM_023821, intron 1 of 12)	intron (NM_023821, intron 1 of 12)	22236	NM_023821	76469	Mm.33857	NM_023821	ENSMUSG00000047419	Cmya5	2310076E16Rik|2310076E21Rik|AA420382|AI504003|Srfsd|Tims|sr553	cardiomyopathy associated 5	protein-coding
chipseq_peak_9774	chr4	48286931	48287728	+	0	NA	intron (NM_010569, intron 2 of 16)	intron (NM_010569, intron 2 of 16)	7569	NM_001281977	16348	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding
chipseq_peak_13853	chr9	105964316	105964922	+	0	NA	Intergenic	Intergenic	-3976	NM_001167923	665033	Mm.39826	NM_001167923	ENSMUSG00000091345	Col6a5	Col29a1|EG665033|Gm7455	collagen, type VI, alpha 5	protein-coding
chipseq_peak_6809	chr18	50136975	50137272	+	0	NA	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	8922	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding
chipseq_peak_10501	chr5	52288385	52289524	+	0	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	-72521	NR_040717	414111	Mm.417638	NR_040717	ENSMUSG00000106464	C130083M11Rik	-	RIKEN cDNA C130083M11 gene	ncRNA
chipseq_peak_7242	chr19	37976014	37976743	+	0	NA	intron (NM_001099634, intron 13 of 52)	MLT1A0|LTR|ERVL-MaLR	67199	NM_001302140	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding
chipseq_peak_10549	chr5	59756479	59756910	+	0	NA	Intergenic	Intergenic	229308	NR_040682	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA
chipseq_peak_7101	chr19	18006024	18006428	+	0	NA	Intergenic	Intergenic	-168594	NM_001190483	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding
chipseq_peak_357	chr1	55835893	55836334	+	0	NA	Intergenic	MIR|SINE|MIR	-95128	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
chipseq_peak_12760	chr8	39091651	39093928	+	0	NA	intron (NM_030254, intron 5 of 7)	intron (NM_030254, intron 5 of 7)	86922	NM_030254	80286	Mm.272722	NM_030254		Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding
chipseq_peak_5847	chr16	63906409	63907878	+	0	NA	Intergenic	Intergenic	-42986	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_3789	chr13	83131928	83134368	+	0	NA	Intergenic	MER121|DNA|TcMar?	-370886	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_6340	chr17	62199361	62199992	+	0	NA	Intergenic	Intergenic	681641	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_10731	chr5	82685318	82685616	+	0	NA	Intergenic	Intergenic	113598	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
chipseq_peak_8159	chr2	128384598	128385003	+	0	NA	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	44551	NR_028589	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA
chipseq_peak_10789	chr5	89864111	89864530	+	0	NA	intron (NM_177872, intron 2 of 21)	intron (NM_177872, intron 2 of 21)	19014	NM_001081401	330119	Mm.133062	NM_177872		Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding
chipseq_peak_10456	chr5	45144071	45144820	+	0	NA	intron (NR_131933, intron 5 of 5)	intron (NR_131933, intron 5 of 5)	178244	NR_073013	75783	Mm.218472	NR_073013	ENSMUSG00000062496	4930431F12Rik	-	RIKEN cDNA 4930431F12 gene	ncRNA
chipseq_peak_1470	chr10	38583110	38583365	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	238542	NM_001177783	215919	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding
chipseq_peak_10776	chr5	88973179	88973526	+	0	NA	intron (NM_001197147, intron 3 of 25)	MER2|DNA|TcMar-Tigger	86092	NM_001197147	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding
chipseq_peak_9837	chr4	59383762	59384264	+	0	NA	intron (NM_001163288, intron 6 of 16)	intron (NM_001163288, intron 6 of 16)	54620	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding
chipseq_peak_13730	chr9	84878603	84878974	+	0	NA	Intergenic	Intergenic	104390	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA
chipseq_peak_8090	chr2	112877176	112878516	+	0	NA	intron (NM_177652, intron 19 of 103)	intron (NM_177652, intron 19 of 103)	152485	NM_177652	20192	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding
chipseq_peak_6004	chr16	75438967	75440195	+	0	NA	Intergenic	Intergenic	146480	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_8042	chr2	104282864	104283860	+	0	NA	intron (NM_001033347, intron 1 of 20)	intron (NM_001033347, intron 1 of 20)	126972	NM_001033347	241589	Mm.358909	NM_001033347	ENSMUSG00000068373	D430041D05Rik	9630056G07Rik|G2	RIKEN cDNA D430041D05 gene	protein-coding
chipseq_peak_325	chr1	50924497	50925720	+	0	NA	Intergenic	Intergenic	-2415	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding
chipseq_peak_12220	chr7	74325043	74325508	+	0	NA	intron (NM_001038643, intron 5 of 10)	L1ME3|LINE|L1	229505	NM_001038643	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding
chipseq_peak_14039	chrX	76538794	76539171	+	0	NA	Intergenic	Intergenic	63942	NM_001201395	74987	Mm.107996	NM_001201395	ENSMUSG00000079525	Cldn34d	4930468A15Rik	claudin 34D	protein-coding
chipseq_peak_4107	chr13	117048555	117049057	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-23290	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding
chipseq_peak_978	chr1	160286385	160288122	+	0	NA	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	8719	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA
chipseq_peak_4014	chr13	108021168	108021474	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-23153	NM_001048250	75616	Mm.491164	NM_001048250		Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding
chipseq_peak_8770	chr3	56707877	56708360	+	0	NA	Intergenic	Intergenic	-524417	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_5381	chr15	91316989	91318001	+	0	NA	intron (NM_001033633, intron 7 of 9)	intron (NM_001033633, intron 7 of 9)	-125688	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding
chipseq_peak_7353	chr2	4017349	4018901	+	0	NA	Intergenic	Intergenic	123016	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA
chipseq_peak_16	chr1	7506987	7507764	+	0	NA	Intergenic	Intergenic	418455	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
chipseq_peak_6450	chr17	79284638	79285383	+	0	NA	Intergenic	Intergenic	70081	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
chipseq_peak_10933	chr5	115277603	115277960	+	0	NA	Intergenic	Intergenic	-1921	NM_026504	52064	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 homolog, methyltransferase (yeast)	protein-coding
chipseq_peak_10880	chr5	107921389	107921767	+	0	NA	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	21050	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding
chipseq_peak_8655	chr3	45403297	45403847	+	0	NA	intron (NM_001098170, intron 4 of 4)	intron (NM_001098170, intron 4 of 4)	25174	NM_001098171	18526	Mm.242644	NM_011043	ENSMUSG00000049100	Pcdh10	6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400	protocadherin 10	protein-coding
chipseq_peak_11268	chr6	21434319	21435094	+	0	NA	intron (NM_019697, intron 1 of 5)	intron (NM_019697, intron 1 of 5)	218597	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding
chipseq_peak_2812	chr12	32757473	32757770	+	0	NA	Intergenic	Intergenic	-62714	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding
chipseq_peak_12192	chr7	69273712	69274088	+	0	NA	Intergenic	Intergenic	-222194	NR_045940	73796	Mm.410832	NR_045940		4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA
chipseq_peak_1432	chr10	32116740	32117256	+	0	NA	intron (NM_001013411, intron 3 of 6)	(TAG)n|Simple_repeat|Simple_repeat	-507273	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
chipseq_peak_4970	chr15	32432747	32433539	+	0	NA	intron (NM_009154, intron 3 of 22)	intron (NM_009154, intron 3 of 22)	188330	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding
chipseq_peak_11424	chr6	42181860	42182806	+	0	NA	Intergenic	Intergenic	-32995	NM_001001453	387515	Mm.377922	NM_001001453	ENSMUSG00000051917	Tas2r144	Tas2r40|Tas2r44|mt2r33	taste receptor, type 2, member 144	protein-coding
chipseq_peak_2828	chr12	34481652	34482319	+	0	NA	intron (NM_024124, intron 2 of 11)	intron (NM_024124, intron 2 of 11)	46904	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
chipseq_peak_11497	chr6	51871128	51871515	+	0	NA	intron (NM_018773, intron 11 of 12)	intron (NM_018773, intron 11 of 12)	141228	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding
chipseq_peak_9521	chr4	13416525	13417005	+	0	NA	Intergenic	L1ME3G|LINE|L1	-326537	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_1797	chr10	92880029	92880262	+	0	NA	Intergenic	Intergenic	-157727	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding
chipseq_peak_13599	chr9	59133901	59134564	+	0	NA	Intergenic	Intergenic	-97791	NM_001042752	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding
chipseq_peak_12432	chr7	111164209	111164704	+	0	NA	Intergenic	Intergenic	-41781	NR_015573	75479	Mm.381620	NR_015573		1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA
chipseq_peak_9992	chr4	85256415	85256727	+	0	NA	intron (NM_019535, intron 1 of 8)	intron (NM_019535, intron 1 of 8)	51115	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding
chipseq_peak_4289	chr14	48924493	48925303	+	0	NA	Intergenic	Intergenic	46025	NR_033783	66770	Mm.136954	NR_033783		4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA
chipseq_peak_12764	chr8	39678656	39679063	+	0	NA	intron (NR_035426, intron 4 of 5)	intron (NR_035426, intron 4 of 5)	-36181	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding
chipseq_peak_3764	chr13	82371532	82373163	+	0	NA	Intergenic	Tigger8|DNA|TcMar-Tigger	325986	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_9649	chr4	27802285	27802881	+	0	NA	Intergenic	Intergenic	-1010548	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_3198	chr12	78001713	78002571	+	0	NA	Intergenic	Intergenic	-224513	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding
chipseq_peak_2563	chr11	108144750	108146847	+	0	NA	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	148950	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA
chipseq_peak_10559	chr5	61971827	61972405	+	0	NA	Intergenic	Intergenic	163273	NM_019468	14380	Mm.347430	NM_019468		G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding
chipseq_peak_10274	chr5	10662294	10662848	+	0	NA	Intergenic	Intergenic	-202458	NR_003596	623849	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo
chipseq_peak_4624	chr14	106151261	106151495	+	0	NA	Intergenic	Intergenic	45180	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding
chipseq_peak_8530	chr3	25092959	25093705	+	0	NA	Intergenic	L1ME1|LINE|L1	1059975	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_4294	chr14	49494122	49496319	+	0	NA	intron (NM_029238, intron 1 of 7)	intron (NM_029238, intron 1 of 7)	30617	NM_029238	75288	Mm.78738	NM_029238	ENSMUSG00000021852	Slc35f4	4930550L21Rik	solute carrier family 35, member F4	protein-coding
chipseq_peak_9202	chr3	124157578	124158418	+	0	NA	Intergenic	Intergenic	-163039	NM_146140	229801	Mm.165810	NM_146140		Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding
chipseq_peak_5286	chr15	69469464	69470008	+	0	NA	Intergenic	Intergenic	199203	NR_130983	75076		NR_130983		4930504C09Rik	-	RIKEN cDNA 4930504C09 gene	ncRNA
chipseq_peak_11984	chr6	143979549	143980600	+	0	NA	intron (NM_001113559, intron 6 of 13)	intron (NM_001113559, intron 6 of 13)	229494	NM_011444	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
chipseq_peak_567	chr1	82727153	82727538	+	0	NA	intron (NM_001310695, intron 2 of 7)	intron (NM_001310695, intron 2 of 7)	2455	NM_001310697	75734	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding
chipseq_peak_4257	chr14	37552378	37552995	+	0	NA	Intergenic	L1M4|LINE|L1	-417364	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
chipseq_peak_13980	chrX	40549678	40549913	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-686191	NM_001191032	100504400	Mm.373409	NM_001191032	ENSMUSG00000095240	Cypt14	-	cysteine-rich perinuclear theca 14	protein-coding
chipseq_peak_28	chr1	9944148	9944475	+	0	NA	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	-193	NR_024067	73824	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA
chipseq_peak_1977	chr10	110386604	110387136	+	0	NA	Intergenic	Intergenic	-213780	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
chipseq_peak_1378	chr10	27127371	27127807	+	0	NA	intron (NM_008481, intron 34 of 63)	intron (NM_008481, intron 34 of 63)	-262277	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_13920	chr9	113351727	113352419	+	0	NA	Intergenic	Intergenic	235079	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_12536	chr7	132157848	132159174	+	0	NA	Intergenic	Intergenic	-3770	NM_018867	55987	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding
chipseq_peak_6339	chr17	62194935	62195400	+	0	NA	Intergenic	Intergenic	686150	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_11447	chr6	45648256	45649224	+	0	NA	intron (NM_001004357, intron 1 of 23)	intron (NM_001004357, intron 1 of 23)	588679	NM_001004357	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_5204	chr15	62735925	62736272	+	0	NA	Intergenic	Intergenic	-516647	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_4707	chr14	116779627	116780017	+	0	NA	Intergenic	Intergenic	-145475	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_3393	chr13	6166182	6166599	+	0	NA	Intergenic	Intergenic	304901	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding
chipseq_peak_510	chr1	72165741	72166371	+	0	NA	intron (NM_001005423, intron 2 of 4)	intron (NM_001005423, intron 2 of 4)	46251	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding
chipseq_peak_13167	chr8	106979324	106980411	+	0	NA	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	44117	NM_009229	20650	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding
chipseq_peak_9790	chr4	51152132	51154632	+	0	NA	Intergenic	Intergenic	-63296	NM_001162865	74914	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding
chipseq_peak_12365	chr7	92627410	92627885	+	0	NA	intron (NM_028665, intron 2 of 11)	L1MD|LINE|L1	9495	NM_028665	73845	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding
chipseq_peak_10268	chr5	9522904	9523285	+	0	NA	intron (NM_181850, intron 3 of 5)	intron (NM_181850, intron 3 of 5)	147390	NR_030537	100124492		NR_030537	ENSMUSG00000077896	Mir879	Mirn879|mir-879|mmu-mir-879	microRNA 879	ncRNA
chipseq_peak_4937	chr15	27503181	27503502	+	0	NA	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	36664	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding
chipseq_peak_10989	chr5	126274250	126274813	+	0	NA	Intergenic	Intergenic	742113	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding
chipseq_peak_5604	chr16	34228548	34229278	+	0	NA	intron (NM_001164268, intron 15 of 33)	intron (NM_001164268, intron 15 of 33)	-261910	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding
chipseq_peak_4842	chr15	17467130	17467610	+	0	NA	Intergenic	Intergenic	689269	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_1778	chr10	90892796	90893121	+	0	NA	intron (NM_181398, intron 3 of 9)	CR1_Mam|LINE|CR1	189785	NM_009684	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding
chipseq_peak_4622	chr14	105924472	105925087	+	0	NA	Intergenic	Intergenic	-27960	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding
chipseq_peak_5859	chr16	64327517	64327894	+	0	NA	Intergenic	Intergenic	151429	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding
chipseq_peak_9171	chr3	120946853	120947206	+	0	NA	Intergenic	Intergenic	-60297	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_8366	chr2	162286663	162287052	+	0	NA	intron (NM_001291150, intron 2 of 30)	intron (NM_001291150, intron 2 of 30)	-103956	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA
chipseq_peak_2695	chr12	12408870	12409527	+	0	NA	Intergenic	Intergenic	-16723	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
chipseq_peak_2910	chr12	44166707	44167238	+	0	NA	Intergenic	Intergenic	43096	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
chipseq_peak_1707	chr10	72654234	72655397	+	0	NA	promoter-TSS (NM_025635)	promoter-TSS (NM_025635)	-31	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding
chipseq_peak_10572	chr5	62706842	62707275	+	0	NA	intron (NM_178407, intron 7 of 32)	intron (NM_178407, intron 7 of 32)	59119	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
chipseq_peak_5032	chr15	42814815	42815779	+	0	NA	Intergenic	Intergenic	-138320	NM_009640	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
chipseq_peak_2511	chr11	92782986	92783758	+	0	NA	Intergenic	Intergenic	-315918	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding
chipseq_peak_10445	chr5	44416568	44417400	+	0	NA	Intergenic	Intergenic	-190378	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding
chipseq_peak_1272	chr10	11922276	11922863	+	0	NA	Intergenic	MARNA|DNA|TcMar-Mariner	313345	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding
chipseq_peak_5411	chr15	94829858	94830711	+	0	NA	intron (NM_178789, intron 3 of 7)	intron (NM_178789, intron 3 of 7)	201099	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding
chipseq_peak_12140	chr7	55581255	55581890	+	0	NA	Intergenic	Intergenic	-186612	NM_001310740	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding
chipseq_peak_544	chr1	77895257	77896570	+	0	NA	Intergenic	Intergenic	301223	NM_001159520	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding
chipseq_peak_14048	chrX	86437927	86438513	+	0	NA	Intergenic	Intergenic	-83226	NR_036689	245502	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo
chipseq_peak_4219	chr14	28387013	28387747	+	0	NA	intron (NM_177814, intron 15 of 15)	intron (NM_177814, intron 15 of 15)	-118093	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
chipseq_peak_7033	chr18	81822136	81822436	+	0	NA	Intergenic	Intergenic	169794	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA
chipseq_peak_5388	chr15	92322305	92322802	+	0	NA	intron (NM_001159648, intron 23 of 23)	intron (NM_001159648, intron 23 of 23)	-74257	NM_001164593	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
chipseq_peak_12616	chr8	9174844	9175431	+	0	NA	Intergenic	Intergenic	30468	NR_073360	74688	Mm.159298	NR_073360		4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA
chipseq_peak_1344	chr10	23513289	23513572	+	0	NA	Intergenic	Intergenic	-163527	NM_010167	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	eyes absent 4 homolog (Drosophila)	protein-coding
chipseq_peak_11675	chr6	95699242	95699723	+	0	NA	intron (NM_011507, intron 1 of 10)	intron (NM_011507, intron 1 of 10)	19364	NM_011507	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding
chipseq_peak_6784	chr18	43619543	43620602	+	0	NA	intron (NM_001163637, intron 1 of 21)	intron (NM_001163637, intron 1 of 21)	67701	NM_001163637	76217	Mm.134602	NM_001163637	ENSMUSG00000024502	Jakmip2	6430702L21Rik|AI850334|D930046L20Rik	janus kinase and microtubule interacting protein 2	protein-coding
chipseq_peak_8977	chr3	84198861	84199576	+	0	NA	intron (NM_030706, intron 3 of 11)	L1M4|LINE|L1	13620	NM_001271728	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding
chipseq_peak_148	chr1	28214097	28214941	+	0	NA	Intergenic	Intergenic	565733	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding
chipseq_peak_6760	chr18	40160540	40160935	+	0	NA	Intergenic	Intergenic	58662	NM_023311	67180	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding
chipseq_peak_9125	chr3	117754082	117754679	+	0	NA	Intergenic	Intergenic	114556	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_13850	chr9	105612104	105612528	+	0	NA	Intergenic	Intergenic	-30679	NM_001081309	75669	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150	protein-coding
chipseq_peak_6527	chr17	90653332	90653799	+	0	NA	intron (NM_020252, intron 8 of 22)	intron (NM_020252, intron 8 of 22)	-207604	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_6057	chr16	79651102	79652167	+	0	NA	Intergenic	Intergenic	-560537	NM_178855	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
chipseq_peak_7660	chr2	46772837	46774077	+	0	NA	Intergenic	Intergenic	1076852	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
chipseq_peak_17	chr1	7534734	7535732	+	0	NA	Intergenic	L1ME1|LINE|L1	446313	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
chipseq_peak_8906	chr3	78810527	78812838	+	0	NA	Intergenic	Intergenic	333205	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_8880	chr3	75078843	75079379	+	0	NA	intron (NM_001310529, intron 11 of 16)	intron (NM_001310529, intron 11 of 16)	64661	NM_172515	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding
chipseq_peak_12002	chr6	144964219	144964454	+	0	NA	Intergenic	Intergenic	84476	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding
chipseq_peak_13937	chr9	116976889	116977389	+	0	NA	intron (NM_001172122, intron 3 of 13)	intron (NM_001172122, intron 3 of 13)	275344	NM_178660	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
chipseq_peak_1997	chr10	112570814	112572947	+	0	NA	Intergenic	Intergenic	-155046	NR_040579	69355	Mm.84337	NR_040579	ENSMUSG00000100314	1700010J16Rik	-	RIKEN cDNA 1700010J16 gene	ncRNA
chipseq_peak_7296	chr19	51468725	51469040	+	0	NA	Intergenic	Intergenic	-790236	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_7460	chr2	12332016	12332897	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-30536	NM_001001309	241226	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding
chipseq_peak_8117	chr2	114918670	114919402	+	0	NA	Intergenic	Intergenic	-264108	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
chipseq_peak_9633	chr4	25725822	25726231	+	0	NA	intron (NM_010243, intron 1 of 2)	intron (NM_010243, intron 1 of 2)	73977	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding
chipseq_peak_3004	chr12	55622420	55622816	+	0	NA	intron (NM_001003719, intron 38 of 39)	intron (NM_001003719, intron 38 of 39)	23701	NM_020287	56856	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding
chipseq_peak_3648	chr13	57637304	57639249	+	0	NA	intron (NM_001166464, intron 4 of 10)	intron (NM_001166464, intron 4 of 10)	270056	NM_001166464	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding
chipseq_peak_10924	chr5	114356154	114357922	+	0	NA	intron (NM_001164573, intron 22 of 30)	intron (NM_001164573, intron 22 of 30)	23467	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding
chipseq_peak_6211	chr17	28799909	28800329	+	0	NA	Intergenic	Intergenic	-1007	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding
chipseq_peak_7674	chr2	48186564	48187314	+	0	NA	Intergenic	Intergenic	-627170	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_841	chr1	138289317	138290779	+	0	NA	TTS (NM_177397)	TTS (NM_177397)	16310	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding
chipseq_peak_11308	chr6	27348339	27348851	+	0	NA	intron (NM_008174, intron 9 of 10)	intron (NM_008174, intron 9 of 10)	588155	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA
chipseq_peak_4887	chr15	21313594	21315827	+	0	NA	intron (NM_001008420, intron 2 of 11)	intron (NM_001008420, intron 2 of 11)	203258	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
chipseq_peak_5152	chr15	55492967	55493299	+	0	NA	intron (NM_181277, intron 42 of 47)	intron (NM_181277, intron 42 of 47)	64179	NM_026759	68537	Mm.236795	NM_026759		Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding
chipseq_peak_9424	chr3	156632996	156633429	+	0	NA	intron (NM_001039094, intron 1 of 6)	intron (NM_001039094, intron 1 of 6)	71418	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding
chipseq_peak_6158	chr17	4378795	4379387	+	0	NA	Intergenic	Intergenic	-255889	NR_130984	75117	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA
chipseq_peak_8231	chr2	138809600	138810428	+	0	NA	Intergenic	Intergenic	-9915	NR_035477	100316816		NR_035477	ENSMUSG00000088983	Mir1952	mmu-mir-1952	microRNA 1952	ncRNA
chipseq_peak_10754	chr5	84440204	84440699	+	0	NA	Intergenic	Intergenic	-23069	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_7658	chr2	46283917	46284575	+	0	NA	Intergenic	Intergenic	587641	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
chipseq_peak_2885	chr12	40698319	40698737	+	0	NA	intron (NM_172803, intron 13 of 52)	intron (NM_172803, intron 13 of 52)	252475	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding
chipseq_peak_81	chr1	20498715	20499342	+	0	NA	intron (NM_153179, intron 35 of 66)	(CA)n|Simple_repeat|Simple_repeat	119029	NM_153179	241035	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding
chipseq_peak_4379	chr14	67197731	67198326	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-35264	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding
chipseq_peak_7902	chr2	76257546	76257847	+	0	NA	intron (NM_001081033, intron 2 of 19)	(TTAA)n|Simple_repeat|Simple_repeat	80957	NM_001081033	241489	Mm.246613	NM_001081033		Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding
chipseq_peak_2897	chr12	41804653	41805460	+	0	NA	intron (NM_053122, intron 6 of 6)	intron (NM_053122, intron 6 of 6)	-318999	NM_001271709	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_2506	chr11	91332868	91333743	+	0	NA	Intergenic	L1ME1|LINE|L1	244250	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding
chipseq_peak_7215	chr19	31180715	31181188	+	0	NA	intron (NM_011160, intron 3 of 17)	intron (NM_011160, intron 3 of 17)	35445	NR_002849	78103	Mm.445198	NR_002849		8430431K14Rik	-	RIKEN cDNA 8430431K14 gene	ncRNA
chipseq_peak_12210	chr7	73201029	73203103	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-99998	NR_046024	625243	Mm.261798	NR_046024		Gm6567	-	predicted gene 6567	ncRNA
chipseq_peak_11800	chr6	105940460	105940911	+	0	NA	intron (NM_173004, intron 3 of 19)	intron (NM_173004, intron 3 of 19)	-178080	NM_001109751	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding
chipseq_peak_13102	chr8	97109039	97109435	+	0	NA	Intergenic	UCON5|Unknown|Unknown	-563264	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_9169	chr3	120729172	120731717	+	0	NA	intron (NR_130170, intron 3 of 18)	intron (NR_130170, intron 3 of 18)	156288	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_1227	chr10	4885411	4886446	+	0	NA	intron (NM_001302533, intron 5 of 7)	intron (NM_001302533, intron 5 of 7)	175770	NM_001302531	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding
chipseq_peak_13240	chr8	123202259	123202588	+	0	NA	TTS (NM_007876)	TTS (NM_007876)	10365	NM_145606	234852	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding
chipseq_peak_13640	chr9	62741133	62741727	+	0	NA	intron (NM_176922, intron 7 of 29)	intron (NM_176922, intron 7 of 29)	63575	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding
chipseq_peak_202	chr1	33896030	33896496	+	0	NA	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	11358	NM_177235	320705	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding
chipseq_peak_9913	chr4	76269236	76269639	+	0	NA	intron (NM_011211, intron 11 of 39)	intron (NM_011211, intron 11 of 39)	-991151	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_8716	chr3	53629938	53631877	+	0	NA	intron (NM_172862, intron 2 of 23)	intron (NM_172862, intron 2 of 23)	26448	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding
chipseq_peak_1544	chr10	49651420	49652772	+	0	NA	intron (NM_010349, intron 2 of 17)	intron (NM_010349, intron 2 of 17)	136658	NM_001111268	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding
chipseq_peak_12131	chr7	55145987	55146640	+	0	NA	intron (NM_178705, intron 5 of 11)	intron (NM_178705, intron 5 of 11)	311068	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_13984	chrX	42684206	42684483	+	0	NA	intron (NM_011855, intron 18 of 32)	intron (NM_011855, intron 18 of 32)	179022	NM_001313691	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding
chipseq_peak_9963	chr4	80763506	80764718	+	0	NA	Intergenic	MLTR25A|LTR|ERVK	-70101	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_12334	chr7	91456823	91458499	+	0	NA	intron (NM_011807, intron 2 of 22)	(TTTTG)n|Simple_repeat|Simple_repeat	366875	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_6632	chr18	21457677	21458429	+	0	NA	Intergenic	Intergenic	-157914	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem	C86169|Fam59a|Gm944|mKIAA4238	GRB2 associated, regulator of MAPK1	protein-coding
chipseq_peak_10227	chr4	151150840	151151230	+	0	NA	intron (NM_001081557, intron 7 of 23)	intron (NM_001081557, intron 7 of 23)	61465	NM_001308446	105704528	Mm.415128	NM_001308446		Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding
chipseq_peak_7544	chr2	34546188	34546716	+	0	NA	intron (NM_001290625, intron 7 of 11)	intron (NM_001290625, intron 7 of 11)	139601	NM_177345	227743	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding
chipseq_peak_4804	chr15	12876340	12876647	+	0	NA	intron (NM_026799, intron 15 of 34)	intron (NM_026799, intron 15 of 34)	51678	NM_026799	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding
chipseq_peak_4329	chr14	60513525	60513953	+	0	NA	Intergenic	Intergenic	-120966	NM_001033272	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding
chipseq_peak_2612	chr11	113815565	113817081	+	0	NA	intron (NM_172800, intron 36 of 44)	B2_Mm2|SINE|B2	-64508	NM_001163346	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
chipseq_peak_13483	chr9	41668864	41669180	+	0	NA	Intergenic	Intergenic	87096	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA
chipseq_peak_9244	chr3	133941133	133941819	+	0	NA	Intergenic	Intergenic	-295019	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding
chipseq_peak_6687	chr18	28719310	28720675	+	0	NA	intron (NR_045398, intron 2 of 4)	intron (NR_045398, intron 2 of 4)	159828	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA
chipseq_peak_9311	chr3	143091917	143092649	+	0	NA	Intergenic	Intergenic	-150772	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA
chipseq_peak_2953	chr12	49982934	49983609	+	0	NA	Intergenic	Intergenic	-502409	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_10462	chr5	45254160	45254461	+	0	NA	intron (NR_131933, intron 4 of 5)	intron (NR_131933, intron 4 of 5)	170090	NR_131933	52401	Mm.33854	NR_131933		D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA
chipseq_peak_12027	chr6	148615314	148616560	+	0	NA	Intergenic	Intergenic	-1628	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
chipseq_peak_10584	chr5	63498781	63499724	+	0	NA	Intergenic	MIRb|SINE|MIR	-149851	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding
chipseq_peak_727	chr1	115964578	115965489	+	0	NA	intron (NM_001077425, intron 3 of 23)	intron (NM_001077425, intron 3 of 23)	279896	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_3968	chr13	101759809	101760475	+	0	NA	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	8075	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding
chipseq_peak_10806	chr5	97015518	97016467	+	0	NA	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	18303	NM_080708	140780	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding
chipseq_peak_5082	chr15	46836094	46836802	+	0	NA	Intergenic	Intergenic	213143	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA
chipseq_peak_4383	chr14	67946366	67946667	+	0	NA	Intergenic	Intergenic	-12944	NM_177780	68813	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding
chipseq_peak_393	chr1	56397373	56399647	+	0	NA	Intergenic	Intergenic	238941	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_10616	chr5	67777837	67778362	+	0	NA	intron (NM_009727, intron 7 of 35)	intron (NM_009727, intron 7 of 35)	69332	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding
chipseq_peak_9045	chr3	103944724	103945970	+	0	NA	intron (NM_172684, intron 2 of 6)	intron (NM_172684, intron 2 of 6)	-22763	NM_001163467	18685	Mm.385178	NM_013629	ENSMUSG00000058388	Phtf1	AU041898|AW049785|Phft|Phtf	putative homeodomain transcription factor 1	protein-coding
chipseq_peak_9223	chr3	127484979	127485482	+	0	NA	Intergenic	Intergenic	-59998	NR_030403	723948		NR_030403	ENSMUSG00000076252	Mir302b	Mirn302b|mir-302b	microRNA 302b	ncRNA
chipseq_peak_12722	chr8	32958707	32959931	+	0	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	-9293	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding
chipseq_peak_6227	chr17	30497395	30498399	+	0	NA	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	78390	NM_172618	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding
chipseq_peak_8517	chr3	21557863	21558524	+	0	NA	Intergenic	Intergenic	-518459	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
chipseq_peak_11094	chr5	144077270	144078163	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-22720	NM_001081109	231876	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding
chipseq_peak_8169	chr2	130453600	130454049	+	0	NA	intron (NM_008980, intron 1 of 21)	intron (NM_008980, intron 1 of 21)	3546	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding
chipseq_peak_3402	chr13	6340731	6341550	+	0	NA	Intergenic	Intergenic	-207017	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding
chipseq_peak_8668	chr3	47353935	47354270	+	0	NA	Intergenic	MER63C|DNA|hAT-Blackjack	-453320	NR_105800	102465199		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA
chipseq_peak_7656	chr2	45168457	45169547	+	0	NA	Intergenic	Intergenic	-55723	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding
chipseq_peak_14101	chrX	155798531	155798930	+	0	NA	Intergenic	Intergenic	-175403	NM_001093750	211612	Mm.218811	NM_001093750		Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding
chipseq_peak_1766	chr10	89855411	89856024	+	0	NA	Intergenic	Intergenic	-17792	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_7952	chr2	82078237	82078906	+	0	NA	intron (NM_175513, intron 1 of 3)	intron (NM_175513, intron 1 of 3)	24913	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding
chipseq_peak_9275	chr3	138747131	138747566	+	0	NA	intron (NR_121195, intron 1 of 7)	intron (NR_121195, intron 1 of 7)	5140	NR_121195	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding
chipseq_peak_7079	chr19	12143014	12143995	+	0	NA	intron (NR_030566, intron 2 of 3)	intron (NR_030566, intron 2 of 3)	-22830	NM_146682	258677	Mm.261576	NM_146682	ENSMUSG00000067522	Olfr76	MOR215-3|V5	olfactory receptor 76	protein-coding
chipseq_peak_3348	chr12	111900671	111901465	+	0	NA	intron (NM_011625, intron 1 of 16)	intron (NM_011625, intron 1 of 16)	6987	NM_011625	21981	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding
chipseq_peak_12788	chr8	42976859	42978026	+	0	NA	Intergenic	Intergenic	164044	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding
chipseq_peak_405	chr1	56963458	56963877	+	0	NA	intron (NM_139146, intron 2 of 10)	intron (NM_139146, intron 2 of 10)	7667	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding
chipseq_peak_1719	chr10	74203659	74204098	+	0	NA	intron (NM_001142735, intron 5 of 32)	L1M4|LINE|L1	382011	NM_001142738	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
chipseq_peak_4115	chr13	117967135	117967416	+	0	NA	intron (NM_010408, intron 6 of 7)	intron (NM_010408, intron 6 of 7)	-247264	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
chipseq_peak_13995	chrX	51372446	51372807	+	0	NA	Intergenic	Intergenic	-166636	NM_134163	171170	Mm.295324	NM_134163		Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding
chipseq_peak_1076	chr1	176885616	176886081	+	0	NA	intron (NM_029756, intron 12 of 17)	intron (NM_029756, intron 12 of 17)	-49715	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_8751	chr3	55447469	55448344	+	0	NA	intron (NM_019978, intron 4 of 16)	(GA)n|Simple_repeat|Simple_repeat	-13852	NM_001111051	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
chipseq_peak_8902	chr3	78311638	78312253	+	0	NA	Intergenic	Intergenic	832942	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_4399	chr14	73226748	73227535	+	0	NA	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-10750	NM_175116	67168	Mm.390681	NM_175116		Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding
chipseq_peak_11359	chr6	33868738	33870020	+	0	NA	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-160069	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding
chipseq_peak_4391	chr14	69028668	69029579	+	0	NA	promoter-TSS (NM_009285)	promoter-TSS (NM_009285)	-166	NM_009285	20855	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding
chipseq_peak_2469	chr11	85998620	85999060	+	0	NA	Intergenic	Intergenic	25510	NR_046030	629393	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA
chipseq_peak_9862	chr4	69195666	69197373	+	0	NA	Intergenic	Intergenic	-242122	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding
chipseq_peak_7781	chr2	60365034	60365787	+	0	NA	intron (NM_013825, intron 3 of 34)	LTR84b|LTR|ERVL	17821	NM_013825	17076	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding
chipseq_peak_1967	chr10	109796916	109797530	+	0	NA	intron (NM_001081035, intron 12 of 38)	intron (NM_001081035, intron 12 of 38)	202996	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding
chipseq_peak_3185	chr12	75646352	75646673	+	0	NA	intron (NM_028203, intron 1 of 1)	intron (NM_028203, intron 1 of 1)	-14763	NR_038063	665931	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo
chipseq_peak_12608	chr8	8391346	8392627	+	0	NA	Intergenic	Intergenic	268787	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_9894	chr4	73041168	73041618	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-188759	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding
chipseq_peak_3698	chr13	70217501	70218291	+	0	NA	Intergenic	Intergenic	-14926	NR_036596	75086	Mm.390616	NR_036596		4930520P13Rik	-	RIKEN cDNA 4930520P13 gene	ncRNA
chipseq_peak_4514	chr14	88804919	88806485	+	0	NA	Intergenic	Intergenic	-334306	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_13627	chr9	61236129	61236435	+	0	NA	Intergenic	L1ME4b|LINE|L1	57527	NR_045334	622037	Mm.126243	NR_045334		B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA
chipseq_peak_6008	chr16	75505018	75505863	+	0	NA	Intergenic	Intergenic	80621	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_5574	chr16	28433068	28433340	+	0	NA	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	12871	NM_001276420	14167	Mm.7996	NM_010199		Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding
chipseq_peak_14119	chrX	160675957	160676739	+	0	NA	intron (NM_011147, intron 5 of 15)	intron (NM_011147, intron 5 of 15)	43624	NM_011147	237178	Mm.296779	NM_011147	ENSMUSG00000062168	Ppef1	PPEF-1	protein phosphatase with EF hand calcium-binding domain 1	protein-coding
chipseq_peak_457	chr1	65687416	65687743	+	0	NA	Intergenic	Intergenic	-238943	NM_027010	12969	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding
chipseq_peak_12170	chr7	63090126	63090883	+	0	NA	Intergenic	Intergenic	122022	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding
chipseq_peak_4858	chr15	19107587	19108132	+	0	NA	Intergenic	Intergenic	287530	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_5044	chr15	43802971	43805169	+	0	NA	Intergenic	Intergenic	65959	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
chipseq_peak_12519	chr7	127654147	127654729	+	0	NA	Intergenic	Intergenic	-40005	NM_177226	320683	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding
chipseq_peak_13939	chr9	117192025	117192416	+	0	NA	intron (NM_001172122, intron 1 of 13)	intron (NM_001172122, intron 1 of 13)	60263	NM_178660	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
chipseq_peak_12571	chr7	142469189	142469807	+	0	NA	intron (NM_001271509, intron 1 of 10)	intron (NM_001271509, intron 1 of 10)	-2345	NM_001271508	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding
chipseq_peak_229	chr1	38438248	38440110	+	0	NA	intron (NM_001290814, intron 4 of 21)	intron (NM_001290814, intron 4 of 21)	188065	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding
chipseq_peak_2960	chr12	50187258	50193491	+	0	NA	Intergenic	Intergenic	458849	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_4768	chr15	3579798	3580615	+	0	NA	intron (NM_010284, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	1636	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding
chipseq_peak_10450	chr5	44659518	44660172	+	0	NA	intron (NM_001077398, intron 2 of 8)	intron (NM_001077398, intron 2 of 8)	139901	NM_001077398	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding
chipseq_peak_10646	chr5	71828195	71829378	+	0	NA	intron (NM_008069, intron 3 of 8)	intron (NM_008069, intron 3 of 8)	128770	NM_008069	14400	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding
chipseq_peak_9000	chr3	85747223	85747774	+	0	NA	Intergenic	Intergenic	-1289	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding
chipseq_peak_13302	chr9	10254076	10254672	+	0	NA	intron (NM_001170787, intron 3 of 24)	intron (NM_001170787, intron 3 of 24)	359943	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_12831	chr8	48688417	48688768	+	0	NA	Intergenic	Intergenic	-13902	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_5763	chr16	52363765	52364432	+	0	NA	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	88899	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
chipseq_peak_3203	chr12	78453257	78453542	+	0	NA	intron (NM_145965, intron 4 of 22)	intron (NM_145965, intron 4 of 22)	226744	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding
chipseq_peak_749	chr1	123156841	123157174	+	0	NA	Intergenic	Intergenic	888552	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding
chipseq_peak_7145	chr19	23166685	23167887	+	0	NA	TTS (NM_010638)	TTS (NM_010638)	17855	NR_035423	100316672		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA
chipseq_peak_4582	chr14	99163105	99163564	+	0	NA	intron (NM_029320, intron 10 of 17)	intron (NM_029320, intron 10 of 17)	-63564	NM_028315	72662	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 mitotic control homolog (S. cerevisiae)	protein-coding
chipseq_peak_13264	chr8	127774304	127775241	+	0	NA	Intergenic	Intergenic	475120	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_7023	chr18	78692181	78692563	+	0	NA	Intergenic	Intergenic	-95422	NM_207651	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
chipseq_peak_4438	chr14	77584028	77585415	+	0	NA	intron (NM_172813, intron 10 of 18)	intron (NM_172813, intron 10 of 18)	-77853	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA
chipseq_peak_11810	chr6	106645393	106646021	+	0	NA	intron (NM_173004, intron 15 of 19)	intron (NM_173004, intron 15 of 19)	103330	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding
chipseq_peak_2854	chr12	37144690	37145303	+	0	NA	intron (NM_008584, intron 1 of 2)	intron (NM_008584, intron 1 of 2)	36450	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding
chipseq_peak_9073	chr3	109322405	109323661	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-17650	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding
chipseq_peak_5328	chr15	77935370	77936136	+	0	NA	Intergenic	Intergenic	-6759	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding
chipseq_peak_5610	chr16	35311193	35311968	+	0	NA	3' UTR (NM_133704, exon 7 of 7)	3' UTR (NM_133704, exon 7 of 7)	52338	NM_133704	317717	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding
chipseq_peak_4766	chr14	124514579	124515359	+	0	NA	intron (NM_207667, intron 1 of 4)	intron (NM_207667, intron 1 of 4)	162158	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding
chipseq_peak_3581	chr13	45210867	45211512	+	0	NA	Intergenic	Intergenic	-178553	NM_153789	218203	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding
chipseq_peak_5128	chr15	52639368	52640294	+	0	NA	Intergenic	PB1D7|SINE|Alu	-72614	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
chipseq_peak_11246	chr6	18511805	18512343	+	0	NA	intron (NM_080285, intron 1 of 22)	intron (NM_080285, intron 1 of 22)	2751	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_6360	chr17	63836431	63837288	+	0	NA	Intergenic	Intergenic	-27122	NM_001037997	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding
chipseq_peak_6089	chr16	86971725	86972112	+	0	NA	Intergenic	Intergenic	-382267	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
chipseq_peak_11561	chr6	63087896	63088878	+	0	NA	Intergenic	Intergenic	-168470	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
chipseq_peak_7107	chr19	19249191	19249627	+	0	NA	Intergenic	Intergenic	-138213	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
chipseq_peak_11065	chr5	136486595	136488222	+	0	NA	intron (NM_198602, intron 1 of 22)	ID|SINE|ID	78573	NM_001291233	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
chipseq_peak_13247	chr8	125696004	125696389	+	0	NA	Intergenic	L1MCa|LINE|L1	26378	NM_028908	74393	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding
chipseq_peak_1103	chr1	177145112	177149059	+	0	NA	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	101682	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_666	chr1	102896688	102897162	+	0	NA	Intergenic	Intergenic	1741157	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
chipseq_peak_2361	chr11	56810342	56810732	+	0	NA	Intergenic	Intergenic	-201081	NM_008165	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding
chipseq_peak_4909	chr15	23420142	23420365	+	0	NA	intron (NM_001081299, intron 8 of 11)	Lx2B2|LINE|L1	383790	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_11276	chr6	22573020	22573393	+	0	NA	Intergenic	B3|SINE|B2	-217125	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding
chipseq_peak_9793	chr4	51889202	51891104	+	0	NA	Intergenic	Intergenic	160957	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA
chipseq_peak_302	chr1	46829820	46830546	+	0	NA	intron (NM_172653, intron 3 of 9)	intron (NM_172653, intron 3 of 9)	23326	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding
chipseq_peak_3798	chr13	83374499	83377173	+	0	NA	Intergenic	Intergenic	-128198	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_1185	chr1	189282378	189282889	+	0	NA	intron (NM_001281848, intron 2 of 5)	intron (NM_001281848, intron 2 of 5)	60720	NM_001159850	16526	Mm.33304	NM_010607	ENSMUSG00000037624	Kcnk2	A430027H14Rik|AI848635|TREK-1	potassium channel, subfamily K, member 2	protein-coding
chipseq_peak_7284	chr19	50060639	50061069	+	0	NA	Intergenic	Intergenic	617792	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_5322	chr15	74075626	74076666	+	0	NA	Intergenic	Intergenic	-236475	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding
chipseq_peak_10999	chr5	128809230	128810387	+	0	NA	intron (NM_001310733, intron 5 of 20)	intron (NM_001310733, intron 5 of 20)	73562	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding
chipseq_peak_8954	chr3	81829838	81831241	+	0	NA	Intergenic	Intergenic	-102077	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
chipseq_peak_10216	chr4	148860063	148860378	+	0	NA	intron (NM_001159344, intron 2 of 20)	intron (NM_001159344, intron 2 of 20)	55828	NM_001159344	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding
chipseq_peak_4540	chr14	93039755	93040363	+	0	NA	intron (NM_001271800, intron 2 of 2)	intron (NM_001271800, intron 2 of 2)	848829	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_944	chr1	154558439	154559077	+	0	NA	intron (NM_009782, intron 7 of 46)	L1ME5|LINE|L1	167162	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
chipseq_peak_13629	chr9	61277544	61279202	+	0	NA	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	15436	NR_045334	622037	Mm.126243	NR_045334		B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA
chipseq_peak_239	chr1	39177033	39177607	+	0	NA	Intergenic	Intergenic	9672	NR_105767	102466631		NR_105767	ENSMUSG00000098833	Mir6349	Gm27558|mmu-mir-6349	microRNA 6349	ncRNA
chipseq_peak_8110	chr2	114378737	114379677	+	0	NA	Intergenic	Intergenic	-177775	NM_175466	228491	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding
chipseq_peak_12394	chr7	96785490	96787053	+	0	NA	intron (NM_001310760, intron 14 of 32)	intron (NM_001310760, intron 14 of 32)	15278	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA
chipseq_peak_10392	chr5	35581940	35583113	+	0	NA	promoter-TSS (NM_030721)	promoter-TSS (NM_030721)	-534	NM_030721	80911	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding
chipseq_peak_3385	chr13	5569673	5569972	+	0	NA	Intergenic	Intergenic	288270	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
chipseq_peak_12189	chr7	68400335	68400982	+	0	NA	Intergenic	Intergenic	-16766	NR_046208	71244	Mm.410787	NR_046208		4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA
chipseq_peak_3999	chr13	107107590	107107978	+	0	NA	Intergenic	Intergenic	85214	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA
chipseq_peak_956	chr1	157939460	157939898	+	0	NA	Intergenic	Intergenic	413509	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding
chipseq_peak_12362	chr7	92422883	92423564	+	0	NA	intron (NM_001243046, intron 9 of 14)	intron (NM_001243046, intron 9 of 14)	-137926	NM_001162918	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding
chipseq_peak_6329	chr17	58672348	58672782	+	0	NA	Intergenic	RLTR25B|LTR|ERVK	318810	NM_027001	69239	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding
chipseq_peak_6051	chr16	78684117	78684509	+	0	NA	Intergenic	Intergenic	-107625	NM_001252439	67102	Mm.37332	NM_025967		D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding
chipseq_peak_9254	chr3	134933803	134934091	+	0	NA	3' UTR (NM_021382, exon 5 of 5)	3' UTR (NM_021382, exon 5 of 5)	104940	NM_021382	21338	Mm.103810	NM_021382	ENSMUSG00000028172	Tacr3	Nk3r|Nkr|Tac3r	tachykinin receptor 3	protein-coding
chipseq_peak_5981	chr16	74466832	74468244	+	0	NA	Intergenic	Intergenic	-56626	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_1578	chr10	53978525	53979348	+	0	NA	intron (NM_008548, intron 5 of 12)	MIR|SINE|MIR	96860	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding
chipseq_peak_2761	chr12	26679936	26680836	+	0	NA	Intergenic	Intergenic	211171	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
chipseq_peak_8674	chr3	48869472	48869856	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-260564	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo
chipseq_peak_2652	chr12	6637446	6639752	+	0	NA	Intergenic	Intergenic	741731	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_13509	chr9	45827823	45829431	+	0	NA	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	11	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding
chipseq_peak_7371	chr2	5671703	5672127	+	0	NA	intron (NM_177343, intron 1 of 10)	L1MA8|LINE|L1	4131	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding
chipseq_peak_322	chr1	49306829	49308096	+	0	NA	Intergenic	Intergenic	-1620061	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding
chipseq_peak_9624	chr4	24700840	24701145	+	0	NA	intron (NM_001033531, intron 4 of 9)	L1_Mur3|LINE|L1	150094	NM_001033531	212390	Mm.412074	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding
chipseq_peak_702	chr1	108764045	108765158	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	847342	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
chipseq_peak_12814	chr8	45751593	45752040	+	0	NA	intron (NM_001310708, intron 4 of 19)	intron (NM_001310708, intron 4 of 19)	67481	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA
chipseq_peak_13975	chrX	36249535	36249848	+	0	NA	Intergenic	L1ME3G|LINE|L1	53787	NM_028325	72693	Mm.297698	NM_028325	ENSMUSG00000036699	Zcchc12	2810028A01Rik|AV136720|Sizn1	zinc finger, CCHC domain containing 12	protein-coding
chipseq_peak_6120	chr16	94885072	94885645	+	0	NA	intron (NM_001025584, intron 2 of 4)	ERVL-B4-int|LTR|ERVL	-28668	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
chipseq_peak_5848	chr16	63933256	63934863	+	0	NA	Intergenic	Intergenic	-69902	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_11025	chr5	131805191	131805649	+	0	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	-74849	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_12050	chr7	30099208	30100142	+	0	NA	5' UTR (NM_011981, exon 2 of 3)	5' UTR (NM_011981, exon 2 of 3)	4599	NM_011981	26466	Mm.195092	NM_011981	ENSMUSG00000049421	Zfp260	AI480997|Ozrf1|PEX1|Zfp63|Znf260	zinc finger protein 260	protein-coding
chipseq_peak_4336	chr14	61640572	61645812	+	0	NA	intron (NR_028264, intron 2 of 6)	ID_B1|SINE|B4	-11082	NR_029733	387174		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA
chipseq_peak_2404	chr11	68750781	68751266	+	0	NA	intron (NM_175260, intron 5 of 40)	intron (NM_175260, intron 5 of 40)	59108	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding
chipseq_peak_11050	chr5	133621135	133621438	+	0	NA	Intergenic	Intergenic	-478462	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
chipseq_peak_8308	chr2	145461507	145462745	+	0	NA	intron (NM_053195, intron 3 of 16)	intron (NM_053195, intron 3 of 16)	92856	NM_001037929	627302	Mm.445953	NM_001037929		Gm14092	OTTMUSG00000015643	predicted gene 14092	protein-coding
chipseq_peak_314	chr1	47987848	47988236	+	0	NA	Intergenic	Intergenic	-520917	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_225	chr1	38288634	38289090	+	0	NA	intron (NM_001290814, intron 8 of 21)	intron (NM_001290814, intron 8 of 21)	-159200	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1 homolog (S. cerevisiae)	protein-coding
chipseq_peak_6931	chr18	66498199	66499904	+	0	NA	Intergenic	Lx8|LINE|L1	-5127	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA
chipseq_peak_11626	chr6	80862166	80862699	+	0	NA	Intergenic	Intergenic	842789	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding
chipseq_peak_9437	chr3	158886352	158887189	+	0	NA	Intergenic	Intergenic	-189594	NR_040750	624759	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA
chipseq_peak_2833	chr12	34528861	34529515	+	0	NA	promoter-TSS (NM_024124)	promoter-TSS (NM_024124)	-299	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
chipseq_peak_2763	chr12	26785496	26785865	+	0	NA	Intergenic	Intergenic	316465	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
chipseq_peak_5062	chr15	44758571	44760707	+	0	NA	intron (NM_176998, intron 1 of 7)	intron (NM_176998, intron 1 of 7)	-7181	NM_178765	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_10430	chr5	40737816	40738374	+	0	NA	Intergenic	Intergenic	969596	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding
chipseq_peak_9558	chr4	16700162	16701124	+	0	NA	Intergenic	Intergenic	536533	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA
chipseq_peak_3514	chr13	29434491	29435052	+	0	NA	intron (NR_131896, intron 13 of 16)	intron (NR_131896, intron 13 of 16)	418516	NR_045073	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
chipseq_peak_1669	chr10	68418493	68418932	+	0	NA	Intergenic	Intergenic	-97570	NR_045357	75148	Mm.23505	NR_045357		4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA
chipseq_peak_9944	chr4	78665776	78666997	+	0	NA	Intergenic	Intergenic	72339	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_9388	chr3	151607787	151608079	+	0	NA	Intergenic	LTR75B|LTR|ERVL	142026	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding
chipseq_peak_5419	chr15	95022302	95022549	+	0	NA	intron (NM_178789, intron 6 of 7)	intron (NM_178789, intron 6 of 7)	126893	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_12452	chr7	113890098	113890384	+	0	NA	intron (NM_145584, intron 5 of 15)	Charlie1a|DNA|hAT-Charlie	124243	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding
chipseq_peak_7203	chr19	28891299	28891587	+	0	NA	intron (NM_009199, intron 2 of 11)	intron (NM_009199, intron 2 of 11)	56277	NM_009199	20510	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding
chipseq_peak_13380	chr9	27514681	27516326	+	0	NA	Intergenic	L1MA8|LINE|L1	118291	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding
chipseq_peak_3716	chr13	76877820	76879617	+	0	NA	intron (NM_030174, intron 15 of 20)	intron (NM_030174, intron 15 of 20)	256750	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding
chipseq_peak_12837	chr8	48880556	48880903	+	0	NA	Intergenic	Intergenic	-206039	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_5613	chr16	36817357	36817668	+	0	NA	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	-8807	NM_001113405	106389	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding
chipseq_peak_3095	chr12	67161046	67161872	+	0	NA	intron (NM_207010, intron 1 of 15)	MLTR14|LTR|ERV1	61090	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_9214	chr3	126653092	126653525	+	0	NA	intron (NM_001293665, intron 2 of 19)	intron (NM_001293665, intron 2 of 19)	56357	NM_001293666	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
chipseq_peak_7543	chr2	34531615	34533438	+	0	NA	intron (NM_001290625, intron 6 of 11)	intron (NM_001290625, intron 6 of 11)	125675	NM_177345	227743	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding
chipseq_peak_7986	chr2	94465932	94466252	+	0	NA	Intergenic	MIRb|SINE|MIR	-27906	NM_001305258	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding
chipseq_peak_11949	chr6	139027254	139028401	+	0	NA	Intergenic	L3|LINE|CR1	294749	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA
chipseq_peak_10485	chr5	49450410	49453290	+	0	NA	Intergenic	Intergenic	-166191	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
chipseq_peak_4159	chr14	14983818	14985325	+	0	NA	intron (NM_001195229, intron 30 of 34)	intron (NM_001195229, intron 30 of 34)	163756	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding
chipseq_peak_10636	chr5	71227523	71228242	+	0	NA	Intergenic	Intergenic	-132033	NM_008066	14395	Mm.5304	NM_008066		Gabra2	C630048P16Rik|Gabra-2	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2	protein-coding
chipseq_peak_2882	chr12	39696829	39697268	+	0	NA	Intergenic	Intergenic	340328	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
chipseq_peak_12308	chr7	90128587	90129227	+	0	NA	intron (NR_046006, intron 1 of 3)	intron (NR_046006, intron 1 of 3)	567	NR_046006	78329	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA
chipseq_peak_2597	chr11	111402677	111403643	+	0	NA	Intergenic	Intergenic	336996	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
chipseq_peak_13555	chr9	51764319	51765222	+	0	NA	promoter-TSS (NM_175535)	promoter-TSS (NM_175535)	-582	NM_175535	244867	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding
chipseq_peak_1872	chr10	100282338	100283049	+	0	NA	Intergenic	Intergenic	-52983	NM_001166637	100043224	Mm.478257	NM_001166637	ENSMUSG00000094314	Gm4301	-	predicted gene 4301	protein-coding
chipseq_peak_5494	chr16	8189220	8189689	+	0	NA	Intergenic	Intergenic	235682	NM_029070	74720	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding
chipseq_peak_7923	chr2	78322402	78323059	+	0	NA	Intergenic	Intergenic	85183	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding
chipseq_peak_8156	chr2	125031743	125032280	+	0	NA	Intergenic	Intergenic	-36116	NM_175034	317750	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding
chipseq_peak_3012	chr12	57825821	57826204	+	0	NA	Intergenic	Intergenic	-163101	NR_131112	217601	Mm.488987	NR_131112		BC042761	-	cDNA sequence BC042761	ncRNA
chipseq_peak_7688	chr2	50013292	50013975	+	0	NA	Intergenic	Intergenic	-52796	NR_033304	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding
chipseq_peak_7412	chr2	7778543	7779858	+	0	NA	Intergenic	Intergenic	-383002	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_9505	chr4	12698367	12699219	+	0	NA	Intergenic	Intergenic	-208044	NM_173746	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_10303	chr5	15775932	15776514	+	0	NA	Intergenic	Intergenic	-61952	NM_001281511	100502967	Mm.425235	NM_001281511	ENSMUSG00000073208	Speer4c	4933431D05Rik|SPEER-4C	spermatogenesis associated glutamate (E)-rich protein 4C	protein-coding
chipseq_peak_6273	chr17	49467389	49467719	+	0	NA	intron (NM_001008231, intron 20 of 25)	intron (NM_001008231, intron 20 of 25)	39190	NM_020042	56738	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding
chipseq_peak_4251	chr14	36761187	36761657	+	0	NA	Intergenic	Intergenic	174146	NM_028407	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding
chipseq_peak_860	chr1	140659050	140661688	+	0	NA	Intergenic	L1MA9|LINE|L1	-3967	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_11506	chr6	54119541	54120358	+	0	NA	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	80017	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding
chipseq_peak_2230	chr11	27969786	27970407	+	0	NA	Intergenic	Intergenic	614228	NM_181577	216613	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding
chipseq_peak_2991	chr12	52675046	52675767	+	0	NA	Intergenic	Intergenic	-23977	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding
chipseq_peak_3122	chr12	70238626	70238980	+	0	NA	Intergenic	Intergenic	10962	NR_045174	414124	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA
chipseq_peak_6707	chr18	30623871	30624282	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	351180	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_8237	chr2	139531969	139532409	+	0	NA	intron (NM_175467, intron 2 of 12)	L1M4b|LINE|L1	38269	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding
chipseq_peak_10103	chr4	104452268	104453013	+	0	NA	intron (NR_104385, intron 1 of 15)	L3|LINE|CR1	85102	NR_104385	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
chipseq_peak_13903	chr9	112734135	112735830	+	0	NA	Intergenic	Intergenic	478408	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_10939	chr5	116540860	116542309	+	0	NA	intron (NM_026886, intron 1 of 12)	intron (NM_026886, intron 1 of 12)	50233	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding
chipseq_peak_4682	chr14	114547418	114548727	+	0	NA	Intergenic	Intergenic	-283893	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_11466	chr6	47318609	47319155	+	0	NA	Intergenic	Intergenic	74486	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_7427	chr2	8082162	8082699	+	0	NA	Intergenic	Intergenic	-686232	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_12030	chr6	148633831	148634509	+	0	NA	Intergenic	Intergenic	-19861	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
chipseq_peak_4659	chr14	111776461	111777426	+	0	NA	Intergenic	Intergenic	101828	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding
chipseq_peak_2202	chr11	25715365	25716387	+	0	NA	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	389769	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_9956	chr4	79820513	79821227	+	0	NA	Intergenic	Intergenic	-1013343	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_4881	chr15	20839675	20840122	+	0	NA	Intergenic	Intergenic	-173148	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_4580	chr14	98555759	98556200	+	0	NA	Intergenic	Intergenic	-386214	NM_007826	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding
chipseq_peak_11177	chr6	12478410	12478843	+	0	NA	intron (NM_001164805, intron 4 of 26)	intron (NM_001164805, intron 4 of 26)	270627	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
chipseq_peak_11440	chr6	44286078	44286816	+	0	NA	Intergenic	Intergenic	-620169	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
chipseq_peak_509	chr1	71897724	71898128	+	0	NA	Intergenic	Intergenic	9814	NR_027658	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA
chipseq_peak_6750	chr18	38349923	38350791	+	0	NA	Intergenic	Intergenic	-11364	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding
chipseq_peak_698	chr1	108046761	108047071	+	0	NA	Intergenic	Intergenic	129657	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
chipseq_peak_12111	chr7	53013888	53014342	+	0	NA	Intergenic	Intergenic	877774	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
chipseq_peak_9439	chr3	158945740	158946172	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-130408	NR_040750	624759	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA
chipseq_peak_7443	chr2	8536584	8538457	+	0	NA	Intergenic	Intergenic	-651995	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_11932	chr6	137265516	137267131	+	0	NA	intron (NM_001164401, intron 1 of 25)	intron (NM_001164401, intron 1 of 25)	14024	NM_001164401	19277	Mm.186361	NM_011216		Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
chipseq_peak_7065	chr19	3467532	3467833	+	0	NA	intron (NM_001164159, intron 17 of 21)	intron (NM_001164159, intron 17 of 21)	-53225	NM_010253	14419	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding
chipseq_peak_1500	chr10	43093267	43093863	+	0	NA	intron (NM_175407, intron 4 of 6)	intron (NM_175407, intron 4 of 6)	80965	NM_175407	109205	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis-binding protein homolog (Drosophila)	protein-coding
chipseq_peak_11034	chr5	132075998	132076308	+	0	NA	intron (NM_177047, intron 2 of 18)	B3A|SINE|B2	195884	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_11751	chr6	102313854	102314286	+	0	NA	intron (NM_008779, intron 4 of 21)	intron (NM_008779, intron 4 of 21)	47970	NR_131018	75893	Mm.2968	NR_131017		4930587E11Rik	4930523E13Rik	RIKEN cDNA 4930587E11 gene	ncRNA
chipseq_peak_8104	chr2	113949493	113949920	+	0	NA	Intergenic	Intergenic	-63859	NR_028423	320846	Mm.441458	NR_028423	ENSMUSG00000087694	A530058N18Rik	-	RIKEN cDNA A530058N18 gene	ncRNA
chipseq_peak_985	chr1	160934084	160934501	+	0	NA	intron (NM_001024952, intron 2 of 19)	intron (NM_001024952, intron 2 of 19)	27881	NM_001024952	381305	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding
chipseq_peak_5661	chr16	41902782	41904156	+	0	NA	intron (NM_175548, intron 2 of 5)	intron (NM_175548, intron 2 of 5)	370127	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_530	chr1	75978160	75978877	+	0	NA	Intergenic	Intergenic	432252	NM_009208	20536	Mm.5053	NM_009208		Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding
chipseq_peak_12363	chr7	92448980	92449622	+	0	NA	TTS (NM_001243046)	TTS (NM_001243046)	-111848	NM_001162918	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding
chipseq_peak_8474	chr3	16867888	16868168	+	0	NA	Intergenic	Intergenic	684845	NR_027375	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding
chipseq_peak_449	chr1	63973439	63973840	+	0	NA	Intergenic	L1MEf|LINE|L1	8912	NR_027824	433315	Mm.342696	NM_001013800	ENSMUSG00000044689	Gm13749	OTTMUSG00000013918	predicted gene 13749	ncRNA
chipseq_peak_13510	chr9	46870987	46872437	+	0	NA	Intergenic	L1ME1|LINE|L1	-41891	NR_015605	73040	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA
chipseq_peak_11760	chr6	103268723	103270464	+	0	NA	Intergenic	Intergenic	-241283	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_7389	chr2	7134712	7134966	+	0	NA	intron (NM_001110231, intron 3 of 15)	intron (NM_001110231, intron 3 of 15)	-53537	NM_001110230	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_6508	chr17	88950522	88951630	+	0	NA	Intergenic	Intergenic	-159100	NM_013582	16867	Mm.1644	NM_013582	ENSMUSG00000024107	Lhcgr	Gpcr19-rs1|LH-R|Lhr	luteinizing hormone/choriogonadotropin receptor	protein-coding
chipseq_peak_5868	chr16	65680006	65680417	+	0	NA	Intergenic	MIRb|SINE|MIR	-117514	NM_026879	68942	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding
chipseq_peak_13179	chr8	109352182	109353597	+	0	NA	Intergenic	Intergenic	-11981	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo
chipseq_peak_6204	chr17	16534532	16535222	+	0	NA	Intergenic	Intergenic	-529226	NM_001163919	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding
chipseq_peak_9139	chr3	118137434	118137759	+	0	NA	Intergenic	Intergenic	-268660	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_4049	chr13	109926118	109927976	+	0	NA	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	23238	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
chipseq_peak_9945	chr4	78698966	78700331	+	0	NA	Intergenic	Intergenic	105601	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_10154	chr4	122995321	122995998	+	0	NA	promoter-TSS (NM_008506)	promoter-TSS (NM_008506)	-272	NM_001303121	16918	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc myelocytomatosis viral oncogene homolog, lung carcinoma derived (avian)	protein-coding
chipseq_peak_10618	chr5	67935525	67936084	+	0	NA	intron (NR_038182, intron 2 of 3)	Charlie18a|DNA|hAT-Charlie	-5865	NM_001256184	330097	Mm.78496	NM_001256184	ENSMUSG00000094719	Gm5108	EG330097	predicted gene 5108	protein-coding
chipseq_peak_759	chr1	125079296	125080540	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	355809	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding
chipseq_peak_4279	chr14	47093268	47094112	+	0	NA	intron (NM_001310544, intron 6 of 7)	intron (NM_001310544, intron 6 of 7)	22471	NR_126579	100038654		NR_126579	ENSMUSG00000072589	Gm10371	ENSMUSG00000072589	predicted gene 10371	ncRNA
chipseq_peak_540	chr1	77544070	77546861	+	0	NA	Intergenic	Intergenic	-30377	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding
chipseq_peak_4503	chr14	87344351	87345649	+	0	NA	Intergenic	Intergenic	-71583	NM_172605	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding
chipseq_peak_10935	chr5	115740030	115740442	+	0	NA	Intergenic	Intergenic	-8677	NM_001080808	75665	Mm.233914	NM_001080808	ENSMUSG00000041609	Ccdc64	2210403N09Rik|BICDR-1	coiled-coil domain containing 64	protein-coding
chipseq_peak_11616	chr6	77862695	77864607	+	0	NA	intron (NM_009819, intron 1 of 18)	L2|LINE|L2	116016	NM_001109764	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding
chipseq_peak_8154	chr2	124495686	124496172	+	0	NA	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-114367	NM_199238	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
chipseq_peak_651	chr1	98279135	98282174	+	0	NA	Intergenic	Intergenic	-140470	NM_001164233	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding
chipseq_peak_3762	chr13	82130241	82130645	+	0	NA	Intergenic	Intergenic	347151	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_5518	chr16	17029674	17030680	+	0	NA	intron (NM_011949, intron 6 of 8)	B1_Mus2|SINE|Alu	-39962	NM_001291047	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding
chipseq_peak_2573	chr11	109148966	109149614	+	0	NA	Intergenic	Intergenic	-4921	NR_037978	268498	Mm.227970	NM_001085512	ENSMUSG00000078605	E030025P04Rik	Gm664	RIKEN cDNA E030025P04 gene	ncRNA
chipseq_peak_6940	chr18	66922856	66923388	+	0	NA	Intergenic	Intergenic	26839	NR_040461	100503582	Mm.329508	NR_040461		Gm19784	-	predicted gene, 19784	ncRNA
chipseq_peak_11081	chr5	142074656	142075566	+	0	NA	intron (NM_177879, intron 22 of 44)	intron (NM_177879, intron 22 of 44)	-326386	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding
chipseq_peak_8266	chr2	141823479	141823877	+	0	NA	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	1077786	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_3771	chr13	82562212	82563943	+	0	NA	Intergenic	Intergenic	135256	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_4792	chr15	10840502	10841063	+	0	NA	Intergenic	Intergenic	11731	NR_040357	100502601	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA
chipseq_peak_3468	chr13	20600272	20601922	+	0	NA	intron (NM_080288, intron 21 of 21)	intron (NM_080288, intron 21 of 21)	128107	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding
chipseq_peak_2648	chr12	6323787	6324146	+	0	NA	Intergenic	L2a|LINE|L2	947464	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA
chipseq_peak_2784	chr12	29526239	29528518	+	0	NA	Intergenic	Intergenic	-1006	NM_001093778	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding
chipseq_peak_5593	chr16	31876261	31876699	+	0	NA	Intergenic	Intergenic	-2330	NM_013900	30060	Mm.30988	NM_013900	ENSMUSG00000022780	Mfi2	CD228|MTf	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding
chipseq_peak_3222	chr12	82321850	82322321	+	0	NA	intron (NM_172579, intron 1 of 20)	intron (NM_172579, intron 1 of 20)	10736	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding
chipseq_peak_7104	chr19	18975092	18975480	+	0	NA	intron (NM_001289921, intron 5 of 10)	intron (NM_001289921, intron 5 of 10)	25831	NM_146095	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
chipseq_peak_13590	chr9	57901392	57902099	+	0	NA	Intergenic	Intergenic	-9241	NM_001122873	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding
chipseq_peak_9846	chr4	64341422	64341824	+	0	NA	Intergenic	Intergenic	-294608	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding
chipseq_peak_7232	chr19	36553022	36554065	+	0	NA	Intergenic	Intergenic	-1096	NM_001163471	226098	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain containing 2	protein-coding
chipseq_peak_109	chr1	23867562	23867958	+	0	NA	intron (NM_001290683, intron 4 of 9)	intron (NM_001290683, intron 4 of 9)	41976	NM_001290683	98366	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding
chipseq_peak_1705	chr10	72410413	72410785	+	0	NA	Intergenic	Intergenic	-244247	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding
chipseq_peak_5074	chr15	45121294	45121733	+	0	NA	Intergenic	Intergenic	-6579	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding
chipseq_peak_4543	chr14	93182121	93183448	+	0	NA	intron (NM_001271800, intron 2 of 2)	intron (NM_001271800, intron 2 of 2)	706104	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_2769	chr12	27138718	27139116	+	0	NA	Intergenic	Intergenic	21599	NR_045869	636791	Mm.423496	NM_001039248	ENSMUSG00000094002	Gm9866	EG636791|ENSMUSG00000052076	predicted gene 9866	ncRNA
chipseq_peak_1133	chr1	179434956	179435392	+	0	NA	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	82829	NM_027188	69726	Mm.222338	NM_027188		Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding
chipseq_peak_14047	chrX	85681864	85683153	+	0	NA	Intergenic	Intergenic	94311	NM_008194	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding
chipseq_peak_13871	chr9	108708637	108709194	+	0	NA	intron (NM_008924, intron 1 of 10)	intron (NM_008924, intron 1 of 10)	16772	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding
chipseq_peak_5362	chr15	85439285	85439637	+	0	NA	intron (NM_016843, intron 10 of 11)	intron (NM_016843, intron 10 of 11)	63766	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding
chipseq_peak_11014	chr5	131222556	131223885	+	0	NA	intron (NM_145218, intron 1 of 10)	intron (NM_145218, intron 1 of 10)	84302	NM_145218	212996	Mm.299204	NM_145218		Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding
chipseq_peak_10552	chr5	60608880	60609766	+	0	NA	Intergenic	Intergenic	-623321	NR_040683	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA
chipseq_peak_12216	chr7	73644359	73644745	+	0	NA	Intergenic	Intergenic	42011	NR_033604	244061	Mm.484605	NR_033604		Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo
chipseq_peak_10354	chr5	21554862	21555104	+	0	NA	intron (NM_177076, intron 10 of 19)	intron (NM_177076, intron 10 of 19)	11456	NM_028977	74511	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding
chipseq_peak_3555	chr13	42731668	42732794	+	0	NA	intron (NM_001302635, intron 3 of 13)	intron (NM_001302635, intron 3 of 13)	22650	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_4829	chr15	15329794	15330428	+	0	NA	Intergenic	Intergenic	-1447990	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_13199	chr8	112921327	112922483	+	0	NA	Intergenic	Intergenic	-145357	NR_033584	791378	Mm.350576	NR_033584		Gm10280	ENSMUSG00000069883	predicted gene 10280	ncRNA
chipseq_peak_10826	chr5	98052054	98053027	+	0	NA	Intergenic	Intergenic	-21578	NM_133738	71914	Mm.24842	NM_133738		Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding
chipseq_peak_10574	chr5	62864381	62864730	+	0	NA	intron (NM_001170705, intron 7 of 8)	RMER19C|LTR|ERVK	50732	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding
chipseq_peak_9770	chr4	47693042	47693898	+	0	NA	Intergenic	Intergenic	218809	NM_024171	66212	Mm.20188	NM_024171	ENSMUSG00000053317	Sec61b	1190006C12Rik|AI326121|AW122942	Sec61 beta subunit	protein-coding
chipseq_peak_7257	chr19	44135862	44136183	+	0	NA	promoter-TSS (NM_001081077)	promoter-TSS (NM_001081077)	-146	NM_001081077	72502	Mm.276109	NM_001081077	ENSMUSG00000025200	Cwf19l1	2610528C06Rik|AI854304|AV336991	CWF19-like 1, cell cycle control (S. pombe)	protein-coding
chipseq_peak_1384	chr10	27322179	27323715	+	0	NA	intron (NM_008481, intron 12 of 63)	intron (NM_008481, intron 12 of 63)	-66919	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_471	chr1	68305684	68306531	+	0	NA	intron (NM_010154, intron 13 of 26)	intron (NM_010154, intron 13 of 26)	801952	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chipseq_peak_532	chr1	76219546	76220048	+	0	NA	Intergenic	Intergenic	-269336	NR_038013	620079	Mm.378379	NR_038012	ENSMUSG00000100553	Gm17751	-	predicted gene, 17751	ncRNA
chipseq_peak_3774	chr13	82593475	82594316	+	0	NA	Intergenic	Intergenic	104438	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_2677	chr12	9918055	9918596	+	0	NA	Intergenic	Intergenic	343883	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding
chipseq_peak_1277	chr10	13304884	13305368	+	0	NA	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	19034	NM_001033257	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding
chipseq_peak_13527	chr9	48951128	48951404	+	0	NA	intron (NM_020274, intron 2 of 8)	intron (NM_020274, intron 2 of 8)	13724	NM_020274	57014	Mm.117131	NM_020274	ENSMUSG00000008590	Htr3b	5-HT3B	5-hydroxytryptamine (serotonin) receptor 3B	protein-coding
chipseq_peak_11143	chr6	6699274	6699618	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-120788	NM_009169	20422	Mm.2469	NM_009169		Shfm1	DSS1|Shfdg1|Shfg	split hand/foot malformation (ectrodactyly) type 1	protein-coding
chipseq_peak_837	chr1	137972276	137973696	+	0	NA	Intergenic	Intergenic	6347	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA
chipseq_peak_10727	chr5	82342687	82343180	+	0	NA	Intergenic	MER21C|LTR|ERVL	456132	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
chipseq_peak_118	chr1	24678108	24678732	+	0	NA	promoter-TSS (NM_026719)	promoter-TSS (NM_026719)	-124	NM_026719	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding
chipseq_peak_4451	chr14	79666891	79667139	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	-4832	NM_010701	16840	Mm.46561	NM_010701	ENSMUSG00000022025	Lect1	Bricd3|ChM-I	leukocyte cell derived chemotaxin 1	protein-coding
chipseq_peak_8471	chr3	15153311	15154687	+	0	NA	Intergenic	Intergenic	178303	NM_001076679	751864	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding
chipseq_peak_2203	chr11	25737094	25737975	+	0	NA	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	411427	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_14148	chrX	168805494	168805809	+	0	NA	intron (NM_009707, intron 1 of 12)	intron (NM_009707, intron 1 of 12)	10552	NM_009707	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding
chipseq_peak_1359	chr10	25722248	25722584	+	0	NA	Intergenic	Intergenic	115021	NR_045349	73803	Mm.258921	NR_045349		4930401C15Rik	-	RIKEN cDNA 4930401C15 gene	ncRNA
chipseq_peak_3330	chr12	103634511	103634874	+	0	NA	Intergenic	Intergenic	-3248	NM_001301404	217847	Mm.29094	NM_144834	ENSMUSG00000061947	Serpina10	PZI|ZPI	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10	protein-coding
chipseq_peak_9375	chr3	150819222	150820315	+	0	NA	Intergenic	Intergenic	-618114	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_12834	chr8	48756778	48758391	+	0	NA	Intergenic	Intergenic	-82894	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_3335	chr12	106358020	106358336	+	0	NA	Intergenic	Intergenic	89488	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA
chipseq_peak_1214	chr1	194049710	194050339	+	0	NA	Intergenic	Intergenic	172735	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_13729	chr9	84858141	84858804	+	0	NA	Intergenic	Intergenic	84074	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA
chipseq_peak_5131	chr15	52740554	52741794	+	0	NA	Intergenic	Intergenic	28729	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
chipseq_peak_5609	chr16	34999072	35001562	+	0	NA	exon (NM_139300, exon 32 of 32)	exon (NM_139300, exon 32 of 32)	-22104	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding
chipseq_peak_12768	chr8	40227097	40227702	+	0	NA	intron (NR_035426, intron 1 of 5)	intron (NR_035426, intron 1 of 5)	388	NR_035426	100316806		NR_035426	ENSMUSG00000080653	Mir669e	Mirn669e|mmu-mir-669e	microRNA 669e	ncRNA
chipseq_peak_12060	chr7	36420457	36421055	+	0	NA	Intergenic	Intergenic	-277362	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding
chipseq_peak_13611	chr9	60054629	60055380	+	0	NA	intron (NM_172444, intron 2 of 11)	intron (NM_172444, intron 2 of 11)	86216	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding
chipseq_peak_2461	chr11	83271132	83272869	+	0	NA	Intergenic	Intergenic	14726	NM_001166028	237890	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding
chipseq_peak_8439	chr3	8141827	8142582	+	0	NA	Intergenic	Intergenic	-187317	NR_040587	75476	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA
chipseq_peak_7062	chr18	90031322	90031990	+	0	NA	Intergenic	Intergenic	-262520	NM_001039173	623279	Mm.447164	NM_001039173		Dok6	Dok-6	docking protein 6	protein-coding
chipseq_peak_4596	chr14	102064536	102065321	+	0	NA	Intergenic	Intergenic	335000	NM_201529	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding
chipseq_peak_13601	chr9	59171359	59172001	+	0	NA	Intergenic	L1ME3G|LINE|L1	-119892	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding
chipseq_peak_6505	chr17	88757963	88758480	+	0	NA	intron (NM_013582, intron 7 of 10)	intron (NM_013582, intron 7 of 10)	33755	NM_013582	16867	Mm.1644	NM_013582	ENSMUSG00000024107	Lhcgr	Gpcr19-rs1|LH-R|Lhr	luteinizing hormone/choriogonadotropin receptor	protein-coding
chipseq_peak_3674	chr13	59667830	59668103	+	0	NA	intron (NM_001035122, intron 1 of 9)	MTD|LTR|ERVL-MaLR	7818	NM_027307	105348	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding
chipseq_peak_4806	chr15	13047762	13048309	+	0	NA	intron (NM_007666, intron 7 of 11)	intron (NM_007666, intron 7 of 11)	125640	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_6551	chr17	93717584	93718244	+	0	NA	Intergenic	Intergenic	518746	NM_001315504	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
chipseq_peak_6433	chr17	75776724	75777063	+	0	NA	Intergenic	Intergenic	-84130	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
chipseq_peak_218	chr1	36636146	36636651	+	0	NA	intron (NM_201365, intron 4 of 9)	intron (NM_201365, intron 4 of 9)	-43066	NM_027957	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding
chipseq_peak_11634	chr6	81738412	81738767	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	157074	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA
chipseq_peak_9264	chr3	137382381	137382670	+	0	NA	intron (NM_016885, intron 3 of 10)	intron (NM_016885, intron 3 of 10)	41447	NM_016885	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding
chipseq_peak_8184	chr2	132471871	132472464	+	0	NA	Intergenic	Intergenic	-18561	NR_028286	70371	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA
chipseq_peak_13549	chr9	51422908	51424155	+	0	NA	Intergenic	Intergenic	-94614	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding
chipseq_peak_1192	chr1	191382031	191382920	+	0	NA	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	14566	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding
chipseq_peak_938	chr1	152986601	152987416	+	0	NA	intron (NM_175460, intron 1 of 10)	intron (NM_175460, intron 1 of 10)	31907	NM_175460	226518	Mm.40548	NM_175460	ENSMUSG00000042751	Nmnat2	AI843915|D030041I09Rik|PNAT1|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding
chipseq_peak_11867	chr6	114951574	114953347	+	0	NA	Intergenic	LTR82A|LTR|ERVL	-30708	NM_177683	232334	Mm.268357	NM_177683		Vgll4	BC048841|VGL-4	vestigial like 4 (Drosophila)	protein-coding
chipseq_peak_7753	chr2	57698385	57699450	+	0	NA	Intergenic	Intergenic	-299238	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
chipseq_peak_737	chr1	121091279	121091641	+	0	NA	intron (NR_110450, intron 1 of 2)	intron (NR_110450, intron 1 of 2)	4055	NR_038008	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA
chipseq_peak_3433	chr13	15715212	15715531	+	0	NA	intron (NM_008130, intron 12 of 14)	intron (NM_008130, intron 12 of 14)	87259	NR_045507	71071	Mm.380845	NR_045507		4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA
chipseq_peak_6981	chr18	69653720	69654350	+	0	NA	intron (NM_001083967, intron 13 of 19)	intron (NM_001083967, intron 13 of 19)	-271524	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding
chipseq_peak_708	chr1	110803127	110803362	+	0	NA	Intergenic	Intergenic	174128	NM_001081386	227485	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding
chipseq_peak_10845	chr5	102095270	102095733	+	0	NA	Intergenic	L1MC5a|LINE|L1	-25580	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding
chipseq_peak_6124	chr16	95654401	95654797	+	0	NA	Intergenic	Intergenic	-47808	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding
chipseq_peak_262	chr1	41431125	41431961	+	0	NA	Intergenic	Intergenic	-250291	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_3856	chr13	89473901	89474508	+	0	NA	Intergenic	L1ME1|LINE|L1	-66432	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding
chipseq_peak_6110	chr16	91896198	91897044	+	0	NA	intron (NM_010587, intron 32 of 38)	intron (NM_010587, intron 32 of 38)	35009	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
chipseq_peak_6962	chr18	68631770	68632527	+	0	NA	Intergenic	Intergenic	-107252	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA
chipseq_peak_14132	chrX	164569612	164570352	+	0	NA	Intergenic	Intergenic	72079	NM_027027	69299	Mm.79031	NM_027027	ENSMUSG00000031384	Asb9	1700011M07Rik	ankyrin repeat and SOCS box-containing 9	protein-coding
chipseq_peak_10693	chr5	77887973	77889359	+	0	NA	Intergenic	Intergenic	423178	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
chipseq_peak_11032	chr5	132027680	132028503	+	0	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	147822	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_7186	chr19	28043377	28043695	+	0	NA	Intergenic	MIR|SINE|MIR	-32370	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding
chipseq_peak_5918	chr16	71196670	71198013	+	0	NA	Intergenic	Intergenic	-52563	NR_040576	78221	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA
chipseq_peak_12848	chr8	50160683	50161443	+	0	NA	Intergenic	Intergenic	-207049	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
chipseq_peak_3279	chr12	93812593	93813462	+	0	NA	Intergenic	Intergenic	-114311	NR_106201	102466888		NR_106201	ENSMUSG00000098498	Mir8099-2	Gm27692|mmu-mir-8099-2	microRNA 8099-2	ncRNA
chipseq_peak_9631	chr4	25453043	25453731	+	0	NA	Intergenic	B4|SINE|B4	-171566	NM_026194	67490	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding
chipseq_peak_4228	chr14	29956953	29957909	+	0	NA	Intergenic	Intergenic	-10949	NM_019979	80795	Mm.104491	NM_019979	ENSMUSG00000042682	Selk	1110001C03Rik|AA673253|HSPC030|Hsp30	selenoprotein K	protein-coding
chipseq_peak_8039	chr2	104205575	104206220	+	0	NA	intron (NM_001033347, intron 13 of 20)	intron (NM_001033347, intron 13 of 20)	83128	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding
chipseq_peak_7762	chr2	58240324	58241788	+	0	NA	Intergenic	MLT1G3-int|LTR|ERVL-MaLR	-35723	NR_040365	100502932	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	OTTMUSG00000012672	predicted gene 13544	ncRNA
chipseq_peak_6309	chr17	54368218	54368825	+	0	NA	intron (NR_045825, intron 1 of 2)	intron (NR_045825, intron 1 of 2)	1553	NR_045825	69418	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA
chipseq_peak_2887	chr12	40905461	40906403	+	0	NA	Intergenic	Intergenic	-118158	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
chipseq_peak_10696	chr5	77930215	77930833	+	0	NA	Intergenic	Intergenic	465036	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
chipseq_peak_5957	chr16	73490872	73491458	+	0	NA	Intergenic	Intergenic	828016	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_7319	chr19	57323224	57323604	+	0	NA	non-coding (NR_040316, exon 3 of 3)	non-coding (NR_040316, exon 3 of 3)	37485	NR_040316	320879	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA
chipseq_peak_11058	chr5	134349629	134349898	+	0	NA	Intergenic	Intergenic	-35003	NM_001080747	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding
chipseq_peak_2512	chr11	93273884	93274282	+	0	NA	intron (NM_028296, intron 2 of 8)	intron (NM_028296, intron 2 of 8)	174793	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding
chipseq_peak_12610	chr8	8621180	8622927	+	0	NA	intron (NM_010111, intron 4 of 4)	intron (NM_010111, intron 4 of 4)	38720	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_1144	chr1	181560862	181561198	+	0	NA	Intergenic	Intergenic	-49579	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding
chipseq_peak_5884	chr16	67512286	67513343	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	108094	NM_001145977	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_10602	chr5	66436639	66437440	+	0	NA	intron (NM_001201414, intron 5 of 15)	intron (NM_001201414, intron 5 of 15)	-99374	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
chipseq_peak_10723	chr5	81761864	81762804	+	0	NA	intron (NM_198702, intron 24 of 27)	intron (NM_198702, intron 24 of 27)	740741	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_6041	chr16	77796561	77797516	+	0	NA	Intergenic	Intergenic	150765	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_5023	chr15	41677648	41678108	+	0	NA	intron (NM_001130166, intron 3 of 16)	intron (NM_001130166, intron 3 of 16)	-111156	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
chipseq_peak_12897	chr8	56465147	56465517	+	0	NA	TTS (NR_131020)	TTS (NR_131020)	19636	NR_131020	75123	Mm.72666	NR_131020		4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA
chipseq_peak_11748	chr6	101931783	101932286	+	0	NA	Intergenic	Intergenic	157785	NR_027989	207157	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157|ENSMUSG00000052236	predicted gene 9871	ncRNA
chipseq_peak_11894	chr6	119248629	119249283	+	0	NA	intron (NM_001033382, intron 6 of 37)	L1_Mur3|LINE|L1	12430	NM_001033382	319734	Mm.440773	NM_001033382	ENSMUSG00000041460	Cacna2d4	5730412N02Rik|BE686333	calcium channel, voltage-dependent, alpha 2/delta subunit 4	protein-coding
chipseq_peak_13851	chr9	105844725	105845237	+	0	NA	Intergenic	Intergenic	-16896	NM_001102607	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding
chipseq_peak_5691	chr16	44254311	44255027	+	0	NA	intron (NM_198034, intron 20 of 24)	intron (NM_198034, intron 20 of 24)	78169	NM_001159419	320007	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding
chipseq_peak_9409	chr3	155074366	155075087	+	0	NA	Intergenic	UCON28c|Unknown|Unknown	18652	NM_029330	75540	Mm.35218	NM_029330	ENSMUSG00000053870	Fpgt	1700016E03Rik	fucose-1-phosphate guanylyltransferase	protein-coding
chipseq_peak_1592	chr10	56177631	56178071	+	0	NA	intron (NM_001033385, intron 12 of 32)	intron (NM_001033385, intron 12 of 32)	50838	NM_001033385	544696	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding
chipseq_peak_6731	chr18	33166622	33167035	+	0	NA	intron (NM_009793, intron 7 of 10)	intron (NM_009793, intron 7 of 10)	46988	NM_133774	170459	Mm.127058	NM_133774		Stard4	4632419C16Rik|9030213J02Rik|AA517649|AW324468	StAR-related lipid transfer (START) domain containing 4	protein-coding
chipseq_peak_10128	chr4	109341457	109344327	+	0	NA	promoter-TSS (NM_001159964)	promoter-TSS (NM_001159964)	-164	NM_001159964	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding
chipseq_peak_6302	chr17	52712627	52713312	+	0	NA	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	110260	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
chipseq_peak_1555	chr10	51553505	51554245	+	0	NA	Intergenic	Intergenic	36585	NM_029894	77296	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding
chipseq_peak_5626	chr16	39223560	39224086	+	0	NA	Intergenic	L1M5|LINE|L1	321478	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_4070	chr13	111324988	111325397	+	0	NA	Intergenic	Intergenic	70179	NM_175497	238880	Mm.107293	NM_175497	ENSMUSG00000055194	Actbl2	4732495G21Rik	actin, beta-like 2	protein-coding
chipseq_peak_5767	chr16	52508999	52509371	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-56188	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
chipseq_peak_6907	chr18	60324216	60324724	+	0	NA	Intergenic	Intergenic	31090	NM_001101475	240328	Mm.329461	NM_001101475	ENSMUSG00000090942	F830016B08Rik	Ifgga4	RIKEN cDNA F830016B08 gene	protein-coding
chipseq_peak_2298	chr11	40781892	40785083	+	0	NA	Intergenic	Intergenic	-28201	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding
chipseq_peak_9403	chr3	153655116	153655470	+	0	NA	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	69840	NM_011372	20447	Mm.296453	NM_011372		St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
chipseq_peak_10654	chr5	72063928	72064887	+	0	NA	intron (NM_008069, intron 5 of 8)	intron (NM_008069, intron 5 of 8)	103776	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding
chipseq_peak_919	chr1	149238311	149239199	+	0	NA	Intergenic	L2c|LINE|L2	683684	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
chipseq_peak_12190	chr7	68815699	68816475	+	0	NA	Intergenic	Intergenic	-66849	NM_001042592	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding
chipseq_peak_4151	chr14	12838877	12839279	+	0	NA	Intergenic	Intergenic	-15999	NM_012061	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding
chipseq_peak_77	chr1	20082586	20082889	+	0	NA	intron (NM_153179, intron 63 of 66)	intron (NM_153179, intron 63 of 66)	-273717	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA
chipseq_peak_6221	chr17	30308985	30309268	+	0	NA	intron (NM_172618, intron 7 of 11)	intron (NM_172618, intron 7 of 11)	-52591	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA
chipseq_peak_9422	chr3	156423206	156423708	+	0	NA	Intergenic	Intergenic	138230	NR_040398	329782	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA
chipseq_peak_10893	chr5	111041626	111042497	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	37917	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_9492	chr4	10351874	10352405	+	0	NA	Intergenic	Intergenic	-434742	NR_004448	74662	Mm.483401	NR_004448	ENSMUSG00000082843	4930448K20Rik	1700009K09Rik	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_486	chr1	70462236	70462817	+	0	NA	intron (NM_029160, intron 15 of 16)	intron (NM_029160, intron 15 of 16)	-263189	NM_177164	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_13898	chr9	112607274	112607647	+	0	NA	Intergenic	Intergenic	350886	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_3779	chr13	82907528	82909488	+	0	NA	Intergenic	Intergenic	-210175	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_10505	chr5	53242325	53243399	+	0	NA	Intergenic	Intergenic	-24244	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding
chipseq_peak_9708	chr4	33514420	33514933	+	0	NA	Intergenic	Intergenic	76595	NR_106198	102465904		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA
chipseq_peak_8802	chr3	63365255	63365634	+	0	NA	intron (NM_001289462, intron 20 of 22)	intron (NM_001289462, intron 20 of 22)	69349	NM_001289463	17380	Mm.296022	NM_008604		Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding
chipseq_peak_3960	chr13	101208620	101209099	+	0	NA	Intergenic	Intergenic	-23268	NR_046158	328324	Mm.402274	NR_046158		5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA
chipseq_peak_6353	chr17	63319807	63320255	+	0	NA	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	-7058	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA
chipseq_peak_9347	chr3	148362929	148364014	+	0	NA	Intergenic	Intergenic	591164	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
chipseq_peak_386	chr1	56305005	56307251	+	0	NA	Intergenic	Intergenic	287150	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_546	chr1	78032210	78032577	+	0	NA	Intergenic	Intergenic	164743	NM_001159520	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding
chipseq_peak_7373	chr2	6255479	6256341	+	0	NA	intron (NR_040333, intron 2 of 6)	T-rich|Low_complexity|Low_complexity	-42916	NM_024208	67856	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding
chipseq_peak_11145	chr6	7367096	7367651	+	0	NA	Intergenic	Intergenic	-187512	NM_001311060	21333	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding
chipseq_peak_9861	chr4	69045839	69046298	+	0	NA	Intergenic	Intergenic	-91671	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding
chipseq_peak_1657	chr10	67931543	67932853	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-19536	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding
chipseq_peak_11600	chr6	76696990	76697438	+	0	NA	Intergenic	Intergenic	-545503	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_4709	chr14	116941726	116942089	+	0	NA	intron (NM_011821, intron 1 of 8)	L1MA5|LINE|L1	16610	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_5937	chr16	72794250	72795836	+	0	NA	intron (NM_019413, intron 2 of 28)	intron (NM_019413, intron 2 of 28)	131894	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_650	chr1	98189890	98193567	+	0	NA	Intergenic	Intergenic	60261	NR_040439	69030	Mm.402692	NR_040439	ENSMUSG00000100182	1810006J02Rik	-	RIKEN cDNA 1810006J02 gene	ncRNA
chipseq_peak_7568	chr2	39252134	39252553	+	0	NA	Intergenic	MERVL_2A-int|LTR|ERVL	-26005	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding
chipseq_peak_667	chr1	103076153	103077299	+	0	NA	Intergenic	Intergenic	-1692093	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_245	chr1	40275562	40275908	+	0	NA	intron (NM_001123382, intron 1 of 10)	intron (NM_001123382, intron 1 of 10)	9149	NM_001123382	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding
chipseq_peak_1482	chr10	39842571	39843092	+	0	NA	intron (NM_011264, intron 20 of 31)	intron (NM_011264, intron 20 of 31)	56407	NR_033628	213332	Mm.484359	NR_033628		AA474331	-	expressed sequence AA474331	pseudo
chipseq_peak_3777	chr13	82778466	82779708	+	0	NA	Intergenic	Intergenic	-80754	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_8037	chr2	102822144	102822620	+	0	NA	intron (NM_001039150, intron 12 of 13)	intron (NM_001039150, intron 12 of 13)	79283	NM_009851	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding
chipseq_peak_3162	chr12	74277182	74277613	+	0	NA	Intergenic	Intergenic	-6879	NR_030735	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA
chipseq_peak_12703	chr8	29005781	29006096	+	0	NA	intron (NM_153135, intron 1 of 17)	intron (NM_153135, intron 1 of 17)	213698	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_9165	chr3	120533245	120535028	+	0	NA	intron (NR_130170, intron 12 of 18)	L1MEf|LINE|L1	352596	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_379	chr1	56239674	56240324	+	0	NA	Intergenic	Intergenic	221021	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_10278	chr5	11983182	11983845	+	0	NA	Intergenic	Intergenic	65470	NM_001177510	545732	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding
chipseq_peak_11877	chr6	116704313	116704813	+	0	NA	intron (NM_178768, intron 1 of 4)	L1ME1|LINE|L1	12195	NM_178768	319776	Mm.133120	NM_178768		Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding
chipseq_peak_6278	chr17	49814317	49815174	+	0	NA	intron (NM_177052, intron 13 of 22)	intron (NM_177052, intron 13 of 22)	199573	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding
chipseq_peak_8480	chr3	17798419	17800154	+	0	NA	intron (NR_033490, intron 2 of 2)	intron (NR_033490, intron 2 of 2)	3624	NR_029814	723950		NR_029814	ENSMUSG00000093073	Mir124a-2	Mirn124a-2|mir-124-2|mir-124a-2	microRNA 124a-2	ncRNA
chipseq_peak_5172	chr15	58525025	58525369	+	0	NA	Intergenic	Intergenic	109729	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	D15Ertd621e	AV220772|BC033609|Fam91a1|SKIN|mKIAA0493	DNA segment, Chr 15, ERATO Doi 621, expressed	protein-coding
chipseq_peak_1202	chr1	193449438	193449978	+	0	NA	Intergenic	Intergenic	57822	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA
chipseq_peak_1025	chr1	168432097	168433007	+	0	NA	promoter-TSS (NM_001291509)	promoter-TSS (NM_001291509)	-383	NM_183355	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding
chipseq_peak_4111	chr13	117765189	117766507	+	0	NA	intron (NM_010408, intron 2 of 7)	intron (NM_010408, intron 2 of 7)	-45837	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
chipseq_peak_9222	chr3	127386900	127387371	+	0	NA	Intergenic	Intergenic	-158093	NR_030403	723948		NR_030403	ENSMUSG00000076252	Mir302b	Mirn302b|mir-302b	microRNA 302b	ncRNA
chipseq_peak_10797	chr5	91363352	91363905	+	0	NA	intron (NM_007568, intron 3 of 5)	intron (NM_007568, intron 3 of 5)	39366	NM_007568	12223	Mm.2024	NM_007568	ENSMUSG00000082361	Btc	Bcn	betacellulin, epidermal growth factor family member	protein-coding
chipseq_peak_14019	chrX	65515422	65515796	+	0	NA	Intergenic	L1_Mur3|LINE|L1	467965	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding
chipseq_peak_8726	chr3	53988084	53989640	+	0	NA	Intergenic	Intergenic	-125055	NM_026435	67890	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|ENSMUSG00000074598|Gm10726	ubiquitin-fold modifier 1	protein-coding
chipseq_peak_13919	chr9	113342066	113342668	+	0	NA	Intergenic	Intergenic	244785	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_12071	chr7	40123297	40123617	+	0	NA	Intergenic	Intergenic	-551280	NR_045504	71029	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA
chipseq_peak_12097	chr7	50241684	50242463	+	0	NA	intron (NM_001037906, intron 9 of 19)	intron (NM_001037906, intron 9 of 19)	266723	NM_001037906	338352	Mm.383528	NM_001037906	ENSMUSG00000055409	Nell1	B230343H07Rik|l7R6	NEL-like 1	protein-coding
chipseq_peak_10441	chr5	43573058	43573590	+	0	NA	intron (NM_001135172, intron 1 of 2)	HAL1b|LINE|L1	-28598	NM_175425	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding
chipseq_peak_8662	chr3	46538408	46539112	+	0	NA	Intergenic	Intergenic	-90819	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding
chipseq_peak_12615	chr8	9132654	9133261	+	0	NA	promoter-TSS (NR_045854)	promoter-TSS (NR_045854)	-669	NR_045854	71249	Mm.158635	NR_045854		4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA
chipseq_peak_2941	chr12	49594484	49594907	+	0	NA	Intergenic	Intergenic	-113833	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_10473	chr5	47794345	47795955	+	0	NA	Intergenic	Intergenic	-188005	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
chipseq_peak_4302	chr14	52295638	52295984	+	0	NA	TTS (NM_023434)	TTS (NM_023434)	9313	NM_019721	56335	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding
chipseq_peak_13140	chr8	101956671	101957259	+	0	NA	Intergenic	Intergenic	828146	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_6259	chr17	45043458	45044368	+	0	NA	intron (NM_178652, intron 10 of 11)	intron (NM_178652, intron 10 of 11)	-163028	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding
chipseq_peak_6251	chr17	44026514	44026874	+	0	NA	intron (NM_207649, intron 4 of 4)	intron (NM_207649, intron 4 of 4)	-52152	NM_032003	83965	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5|mKIAA4152	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding
chipseq_peak_12229	chr7	75077367	75078034	+	0	NA	Intergenic	L1ME5|LINE|L1	47489	NR_131122	75205	Mm.399304	NR_131122		4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA
chipseq_peak_9753	chr4	43000066	43001093	+	0	NA	promoter-TSS (NM_009503)	promoter-TSS (NM_009503)	-72	NM_009503	269523	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding
chipseq_peak_9051	chr3	104304213	104304802	+	0	NA	Intergenic	Intergenic	-84101	NM_001159354	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
chipseq_peak_7930	chr2	78779492	78780316	+	0	NA	Intergenic	Intergenic	-89143	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chipseq_peak_11583	chr6	73644855	73645234	+	0	NA	Intergenic	Intergenic	-174023	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA
chipseq_peak_1845	chr10	98624679	98625320	+	0	NA	Intergenic	Intergenic	-273132	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA
chipseq_peak_3614	chr13	47374594	47375014	+	0	NA	Intergenic	MLT2D|LTR|ERVL	180801	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding
chipseq_peak_1120	chr1	177501134	177501679	+	0	NA	Intergenic	Intergenic	55585	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_7998	chr2	96234715	96237093	+	0	NA	Intergenic	Intergenic	-82265	NM_001289743	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_180	chr1	32223603	32224698	+	0	NA	intron (NM_133235, intron 1 of 8)	intron (NM_133235, intron 1 of 8)	51344	NM_133235	170771	Mm.336594	NM_133235		Khdrbs2	6330586C16Rik|Slim1|Slm1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding
chipseq_peak_1135	chr1	179477065	179477436	+	0	NA	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	40753	NM_027188	69726	Mm.222338	NM_027188		Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding
chipseq_peak_8878	chr3	74920510	74921547	+	0	NA	Intergenic	Intergenic	222744	NM_172515	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding
chipseq_peak_6208	chr17	17428854	17429532	+	0	NA	intron (NM_025681, intron 2 of 5)	intron (NM_025681, intron 2 of 5)	26507	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb expression 1 homolog (chicken)	protein-coding
chipseq_peak_1099	chr1	177125955	177127310	+	0	NA	intron (NM_011785, intron 2 of 12)	intron (NM_011785, intron 2 of 12)	122135	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_6767	chr18	41251771	41252067	+	0	NA	Intergenic	Intergenic	699275	NM_029942	77619	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding
chipseq_peak_5907	chr16	70220739	70221329	+	0	NA	Intergenic	Intergenic	-92915	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding
chipseq_peak_9614	chr4	24213437	24215935	+	0	NA	Intergenic	Intergenic	-281776	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_11345	chr6	33364777	33365420	+	0	NA	intron (NM_009148, intron 7 of 17)	intron (NM_009148, intron 7 of 17)	115948	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
chipseq_peak_7822	chr2	63183283	63184196	+	0	NA	intron (NM_133207, intron 1 of 15)	intron (NM_133207, intron 1 of 15)	548	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
chipseq_peak_10570	chr5	62665255	62665643	+	0	NA	intron (NM_178407, intron 19 of 32)	intron (NM_178407, intron 19 of 32)	100728	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
chipseq_peak_13142	chr8	102030964	102031409	+	0	NA	Intergenic	L1M4|LINE|L1	753925	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_5899	chr16	68910595	68911457	+	0	NA	Intergenic	Intergenic	889355	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA
chipseq_peak_9587	chr4	20560526	20560917	+	0	NA	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	217947	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding
chipseq_peak_3399	chr13	6283069	6283690	+	0	NA	Intergenic	Intergenic	-264778	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding
chipseq_peak_5453	chr15	102635675	102636444	+	0	NA	Intergenic	Intergenic	-10595	NM_001310066	223922	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding
chipseq_peak_8697	chr3	51603733	51604292	+	0	NA	Intergenic	Intergenic	-43189	NM_080793	73251	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding
chipseq_peak_929	chr1	151526577	151526959	+	0	NA	Intergenic	Intergenic	-25945	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding
chipseq_peak_14075	chrX	133118799	133119345	+	0	NA	Intergenic	Intergenic	569921	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding
chipseq_peak_12993	chr8	72239598	72240312	+	0	NA	promoter-TSS (NM_007456)	promoter-TSS (NM_007456)	-177	NM_007456	11767	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|[m]1A|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding
chipseq_peak_3062	chr12	63219673	63220782	+	0	NA	Intergenic	Intergenic	532440	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA
chipseq_peak_10186	chr4	129790587	129791861	+	0	NA	Intergenic	Intergenic	-29255	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding
chipseq_peak_9208	chr3	124587464	124587894	+	0	NA	Intergenic	Intergenic	-6588	NR_015460	384775	Mm.489851	NR_015460	ENSMUSG00000039174	1700003H04Rik	4930538K10Rik|4933400D22Rik	RIKEN cDNA 1700003H04 gene	ncRNA
chipseq_peak_8539	chr3	25937161	25937633	+	0	NA	intron (NM_138666, intron 3 of 7)	intron (NM_138666, intron 3 of 7)	215910	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_2046	chr10	121956389	121956950	+	0	NA	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	90646	NM_001242411	117600	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding
chipseq_peak_9180	chr3	122506241	122506723	+	0	NA	intron (NM_013867, intron 4 of 11)	intron (NM_013867, intron 4 of 11)	35199	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA
chipseq_peak_12590	chr8	7059658	7060934	+	0	NA	Intergenic	Intergenic	1600477	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_6588	chr18	12946467	12947120	+	0	NA	Intergenic	Intergenic	-4952	NM_207530	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding
chipseq_peak_5711	chr16	46858874	46859704	+	0	NA	Intergenic	Intergenic	-362322	NM_021496	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
chipseq_peak_7248	chr19	42689165	42689798	+	0	NA	Intergenic	Intergenic	63294	NM_029011	74580	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding
chipseq_peak_9009	chr3	86844269	86845471	+	0	NA	intron (NM_001195496, intron 2 of 16)	(CA)n|Simple_repeat|Simple_repeat	76014	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
chipseq_peak_1342	chr10	23104929	23105295	+	0	NA	3' UTR (NM_010167, exon 19 of 19)	3' UTR (NM_010167, exon 19 of 19)	244791	NM_010167	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	eyes absent 4 homolog (Drosophila)	protein-coding
chipseq_peak_4091	chr13	114566282	114567279	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	-40448	NR_045976	75161	Mm.50406	NM_175218	ENSMUSG00000051758	4930544M13Rik	-	RIKEN cDNA 4930544M13 gene	ncRNA
chipseq_peak_4080	chr13	113482612	113483216	+	0	NA	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	19930	NR_045501	70917	Mm.491036	NR_045501		4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA
chipseq_peak_5008	chr15	39391655	39392870	+	0	NA	intron (NM_001256382, intron 3 of 26)	intron (NM_001256382, intron 3 of 26)	193976	NM_053271	116838	Mm.309296	NM_053271		Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding
chipseq_peak_524	chr1	74207852	74208278	+	0	NA	Intergenic	Intergenic	-1445	NR_035449	100316687		NR_035449	ENSMUSG00000087820	Mir1928	mmu-mir-1928	microRNA 1928	ncRNA
chipseq_peak_861	chr1	140827904	140829093	+	0	NA	Intergenic	Intergenic	-172096	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_4416	chr14	75690107	75690938	+	0	NA	Intergenic	L1M5|LINE|L1	48263	NM_029230	75272	Mm.159483	NM_029230	ENSMUSG00000022002	Erich6b	4930564B18Rik	glutamate rich 6B	protein-coding
chipseq_peak_617	chr1	94660352	94661497	+	0	NA	Intergenic	Intergenic	-136518	NR_040473	74689	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA
chipseq_peak_9446	chr4	5205260	5207540	+	0	NA	Intergenic	Intergenic	-413094	NM_177730	242291	Mm.218889	NM_177730		Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding
chipseq_peak_12976	chr8	67935886	67936771	+	0	NA	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	-25382	NM_030263	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding
chipseq_peak_4310	chr14	55410806	55411500	+	0	NA	Intergenic	Intergenic	-67605	NM_030686	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding
chipseq_peak_1388	chr10	27482856	27484953	+	0	NA	intron (NM_008481, intron 1 of 63)	intron (NM_008481, intron 1 of 63)	94038	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_5844	chr16	63817522	63818068	+	0	NA	intron (NM_010140, intron 2 of 16)	intron (NM_010140, intron 2 of 16)	46362	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_2259	chr11	37143424	37145071	+	0	NA	Intergenic	Intergenic	-200006	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
chipseq_peak_10824	chr5	97906800	97907966	+	0	NA	intron (NM_133738, intron 16 of 16)	intron (NM_133738, intron 16 of 16)	123579	NM_133738	71914	Mm.24842	NM_133738		Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding
chipseq_peak_11819	chr6	108021713	108022248	+	0	NA	Intergenic	Intergenic	-43065	NM_178391	74729	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding
chipseq_peak_824	chr1	136845725	136846369	+	0	NA	intron (NM_001159769, intron 8 of 8)	intron (NM_001159769, intron 8 of 8)	107583	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding
chipseq_peak_10013	chr4	87485956	87486959	+	0	NA	Intergenic	Intergenic	-255917	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
chipseq_peak_911	chr1	147658215	147658785	+	0	NA	Intergenic	Intergenic	1160813	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_10329	chr5	17006886	17007359	+	0	NA	Intergenic	Intergenic	453221	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
chipseq_peak_2319	chr11	42425610	42426107	+	0	NA	intron (NM_008070, intron 4 of 9)	intron (NM_008070, intron 4 of 9)	6101	NM_008070	14401	Mm.338723	NM_008070		Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding
chipseq_peak_6231	chr17	31660658	31661630	+	0	NA	Intergenic	Intergenic	-2390	NM_024187	108121	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik|35kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding
chipseq_peak_37	chr1	11582644	11582969	+	0	NA	intron (NM_001310451, intron 5 of 12)	intron (NM_001310451, intron 5 of 12)	168701	NM_001160369	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding
chipseq_peak_11097	chr5	146147115	146148017	+	0	NA	Intergenic	Intergenic	37738	NM_001008547	69282	Mm.373573	NM_001008547	ENSMUSG00000095040	1700001J03Rik	-	RIKEN cDNA 1700001J03 gene	protein-coding
chipseq_peak_5181	chr15	60071869	60072364	+	0	NA	Intergenic	Intergenic	-55498	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding
chipseq_peak_9698	chr4	32414892	32415429	+	0	NA	Intergenic	Intergenic	-2275	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology 2	protein-coding
chipseq_peak_4128	chr14	8589992	8590316	+	0	NA	intron (NM_028934, intron 4 of 15)	intron (NM_028934, intron 4 of 15)	76136	NM_028934	74430	Mm.271901	NM_028934	ENSMUSG00000021747	4930452B06Rik	4933406L09Rik|AI854000	RIKEN cDNA 4930452B06 gene	protein-coding
chipseq_peak_8129	chr2	116772642	116772952	+	0	NA	Intergenic	Intergenic	-105894	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding
chipseq_peak_4353	chr14	64372989	64373678	+	0	NA	intron (NM_001253712, intron 1 of 5)	intron (NM_001253712, intron 1 of 5)	43623	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_8964	chr3	82130818	82133385	+	0	NA	intron (NM_021896, intron 1 of 8)	intron (NM_021896, intron 1 of 8)	13776	NM_021896	60596	Mm.143831	NM_021896	ENSMUSG00000033910	Gucy1a3	1200016O07Rik|sGC-alpha1	guanylate cyclase 1, soluble, alpha 3	protein-coding
chipseq_peak_6583	chr18	12871449	12873728	+	0	NA	intron (NM_207530, intron 14 of 27)	intron (NM_207530, intron 14 of 27)	7391	NM_001252489	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding
chipseq_peak_5687	chr16	43552416	43552848	+	0	NA	intron (NM_019778, intron 3 of 8)	intron (NM_019778, intron 3 of 8)	-88023	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA
chipseq_peak_1036	chr1	169407974	169408921	+	0	NA	Intergenic	Intergenic	123017	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
chipseq_peak_12779	chr8	41601674	41602074	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-184756	NM_013522	14300	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding
chipseq_peak_4299	chr14	51026869	51027089	+	0	NA	Intergenic	Intergenic	14888	NM_183032	328401	Mm.99528	NM_183032	ENSMUSG00000052382	Rnase9	ESRL|Rak1	ribonuclease, RNase A family, 9 (non-active)	protein-coding
chipseq_peak_3196	chr12	77857369	77858017	+	0	NA	Intergenic	Intergenic	-368962	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding
chipseq_peak_2274	chr11	38728750	38730239	+	0	NA	Intergenic	Intergenic	-209449	NR_040295	100502917	Mm.61144	NR_040295		Gm12130	OTTMUSG00000005424	predicted gene 12130	ncRNA
chipseq_peak_10248	chr5	5134064	5135520	+	0	NA	intron (NM_001310448, intron 5 of 13)	intron (NM_001310448, intron 5 of 13)	131276	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding
chipseq_peak_1361	chr10	25982301	25983661	+	0	NA	Intergenic	Intergenic	-88476	NR_030449	751520		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA
chipseq_peak_5216	chr15	63162899	63163485	+	0	NA	Intergenic	MIRb|SINE|MIR	316416	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA
chipseq_peak_755	chr1	124148479	124149042	+	0	NA	Intergenic	Intergenic	-103201	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding
chipseq_peak_6726	chr18	32894203	32894641	+	0	NA	Intergenic	Intergenic	-13749	NR_105779	102465186		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA
chipseq_peak_3106	chr12	69016947	69017286	+	0	NA	Intergenic	Intergenic	142070	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding
chipseq_peak_8706	chr3	53219358	53219571	+	0	NA	intron (NM_175386, intron 2 of 3)	intron (NM_175386, intron 2 of 3)	177917	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968	lipoma HMGIC fusion partner	protein-coding
chipseq_peak_1186	chr1	189532520	189533616	+	0	NA	Intergenic	Intergenic	-130795	NM_001281848	16526	Mm.33304	NM_010607	ENSMUSG00000037624	Kcnk2	A430027H14Rik|AI848635|TREK-1	potassium channel, subfamily K, member 2	protein-coding
chipseq_peak_236	chr1	38856116	38856598	+	0	NA	Intergenic	Intergenic	-35142	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding
chipseq_peak_6926	chr18	66118149	66119465	+	0	NA	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	100526	NR_030467	751558		NR_030467	ENSMUSG00000076147	Mir694	Mirn694|mir-694|mmu-mir-694	microRNA 694	ncRNA
chipseq_peak_8344	chr2	157861841	157862736	+	0	NA	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-52365	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding
chipseq_peak_76	chr1	20039271	20039849	+	0	NA	Intergenic	Intergenic	-316894	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA
chipseq_peak_11653	chr6	91180698	91181126	+	0	NA	Intergenic	Intergenic	24097	NM_144919	232232	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding
chipseq_peak_6580	chr18	12120529	12120893	+	0	NA	intron (NM_001289666, intron 1 of 14)	B3|SINE|B2	826	NR_110356	338363	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding
chipseq_peak_9717	chr4	34320724	34321278	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-229614	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding
chipseq_peak_13615	chr9	60836967	60837580	+	0	NA	intron (NM_028283, intron 1 of 18)	intron (NM_028283, intron 1 of 18)	42725	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
chipseq_peak_1996	chr10	112315059	112315430	+	0	NA	intron (NM_001025581, intron 2 of 4)	intron (NM_001025581, intron 2 of 4)	44121	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding
chipseq_peak_12335	chr7	91474199	91474698	+	0	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	383662	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_223	chr1	37725728	37726028	+	0	NA	Intergenic	Intergenic	-6067	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding
chipseq_peak_13498	chr9	43412171	43412774	+	0	NA	Intergenic	L1MC5a|LINE|L1	101709	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding
chipseq_peak_2922	chr12	45879415	45879792	+	0	NA	Intergenic	MERVL_2A-int|LTR|ERVL	-805120	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
chipseq_peak_12614	chr8	9124350	9125015	+	0	NA	TTS (NR_045854)	TTS (NR_045854)	7606	NR_045854	71249	Mm.158635	NR_045854		4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA
chipseq_peak_5573	chr16	28402559	28403107	+	0	NA	intron (NM_010199, intron 2 of 5)	MLT1J1|LTR|ERVL-MaLR	43242	NM_001276420	14167	Mm.7996	NM_010199		Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding
chipseq_peak_4265	chr14	38846898	38847610	+	0	NA	intron (NM_008734, intron 2 of 9)	intron (NM_008734, intron 2 of 9)	-51048	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
chipseq_peak_5746	chr16	50171417	50171916	+	0	NA	Intergenic	Intergenic	-98814	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA
chipseq_peak_11144	chr6	6765368	6766153	+	0	NA	Intergenic	Intergenic	-97574	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding
chipseq_peak_2477	chr11	86432801	86433211	+	0	NA	intron (NR_030571, intron 1 of 2)	intron (NR_030571, intron 1 of 2)	17162	NR_030571	100124487		NR_030571	ENSMUSG00000077049	Mir467c	Mirn467c	microRNA 467c	ncRNA
chipseq_peak_9507	chr4	12799418	12800387	+	0	NA	Intergenic	Intergenic	-106935	NM_173746	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_117	chr1	24248915	24249490	+	0	NA	intron (NM_001290691, intron 31 of 31)	intron (NM_001290691, intron 31 of 31)	53999	NM_001290691	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding
chipseq_peak_5696	chr16	44562122	44562995	+	0	NA	Intergenic	Intergenic	-3688	NM_172506	117606	Mm.41561	NM_172506	ENSMUSG00000022687	Boc	4732455C11|mFLJ00376	biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	protein-coding
chipseq_peak_8192	chr2	134649141	134649718	+	0	NA	Intergenic	Intergenic	-5308	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
chipseq_peak_10243	chr5	4578857	4579110	+	0	NA	Intergenic	Intergenic	179233	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled homolog 1 (Drosophila)	protein-coding
chipseq_peak_10848	chr5	102306262	102306817	+	0	NA	Intergenic	Intergenic	-174852	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
chipseq_peak_5535	chr16	23721733	23722264	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	112079	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding
chipseq_peak_13499	chr9	43575347	43575963	+	0	NA	Intergenic	L1ME3C|LINE|L1	-168921	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Pvrl1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|nectin-1	poliovirus receptor-related 1	protein-coding
chipseq_peak_13775	chr9	95168507	95169462	+	0	NA	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	238286	NM_018763	54371	Mm.212446	NM_018763		Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding
chipseq_peak_11739	chr6	101422297	101423052	+	0	NA	Intergenic	Intergenic	-44777	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
chipseq_peak_10587	chr5	63648203	63649267	+	0	NA	promoter-TSS (NM_177006)	promoter-TSS (NM_177006)	-368	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding
chipseq_peak_362	chr1	55914101	55916266	+	0	NA	Intergenic	Intergenic	-16058	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
chipseq_peak_3991	chr13	105108112	105108503	+	0	NA	intron (NM_025751, intron 2 of 7)	intron (NM_025751, intron 2 of 7)	26185	NM_025751	66763	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding
chipseq_peak_7516	chr2	28797337	28798716	+	0	NA	intron (NM_001033874, intron 11 of 12)	intron (NM_001033874, intron 11 of 12)	42334	NM_001166033	269252	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding
chipseq_peak_8628	chr3	40049703	40050388	+	0	NA	Intergenic	Intergenic	472867	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_6444	chr17	77930762	77931351	+	0	NA	Intergenic	Intergenic	-269192	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
chipseq_peak_14141	chrX	166809115	166809532	+	0	NA	Intergenic	Intergenic	147298	NR_046015	382255	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA
chipseq_peak_2899	chr12	42148053	42148774	+	0	NA	Intergenic	L1Md_T|LINE|L1	-662356	NM_001271709	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_13895	chr9	112498520	112499213	+	0	NA	Intergenic	L1M5|LINE|L1	242292	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_587	chr1	86408877	86409248	+	0	NA	Intergenic	Intergenic	-17267	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding
chipseq_peak_14087	chrX	139711195	139711907	+	0	NA	intron (NM_001081499, intron 5 of 20)	intron (NM_001081499, intron 5 of 20)	26555	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding
chipseq_peak_2720	chr12	14870581	14872946	+	0	NA	Intergenic	Intergenic	178626	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
chipseq_peak_5508	chr16	12207731	12208023	+	0	NA	intron (NM_001174086, intron 2 of 3)	intron (NM_001174086, intron 2 of 3)	223764	NM_001174086	72555	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding
chipseq_peak_12081	chr7	48804106	48804537	+	0	NA	intron (NM_028031, intron 5 of 16)	intron (NM_028031, intron 5 of 16)	15318	NM_028031	243983	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding
chipseq_peak_5892	chr16	67850247	67850779	+	0	NA	Intergenic	Intergenic	-229605	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_4019	chr13	108130472	108131071	+	0	NA	intron (NM_001127346, intron 1 of 3)	intron (NM_001127346, intron 1 of 3)	27854	NM_001127346	75597	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding
chipseq_peak_13005	chr8	76593710	76594294	+	0	NA	Intergenic	Intergenic	306171	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
chipseq_peak_658	chr1	99317149	99317772	+	0	NA	Intergenic	Intergenic	-455305	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding
chipseq_peak_9454	chr4	6030560	6031101	+	0	NA	Intergenic	L2|LINE|L2	-160275	NM_026534	68053	Mm.404043	NM_026534		Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding
chipseq_peak_1222	chr1	194452405	194452968	+	0	NA	Intergenic	Intergenic	-167143	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding
chipseq_peak_5654	chr16	41702005	41702592	+	0	NA	intron (NM_175548, intron 1 of 5)	intron (NM_175548, intron 1 of 5)	168956	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_6011	chr16	75743990	75744408	+	0	NA	Intergenic	Intergenic	22619	NR_027492	110920	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding
chipseq_peak_9678	chr4	31320706	31321816	+	0	NA	Intergenic	Intergenic	-642846	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_1691	chr10	69979584	69980182	+	0	NA	intron (NM_170690, intron 33 of 41)	B1_Mur1|SINE|Alu	54351	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_7945	chr2	80073413	80074362	+	0	NA	intron (NM_001159582, intron 2 of 15)	intron (NM_001159582, intron 2 of 15)	55084	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding
chipseq_peak_799	chr1	131491712	131492736	+	0	NA	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	35137	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding
chipseq_peak_8273	chr2	142021642	142022138	+	0	NA	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	879574	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_1237	chr10	7019653	7020195	+	0	NA	intron (NM_001304950, intron 4 of 4)	intron (NM_001304950, intron 4 of 4)	3261	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding
chipseq_peak_934	chr1	152004522	152005108	+	0	NA	intron (NM_197990, intron 2 of 5)	intron (NM_197990, intron 2 of 5)	85505	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding
chipseq_peak_11321	chr6	30403134	30403939	+	0	NA	intron (NM_001311087, intron 1 of 8)	intron (NM_001311087, intron 1 of 8)	1681	NM_029742	76788	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding
chipseq_peak_177	chr1	32092863	32093969	+	0	NA	Intergenic	Intergenic	-79390	NM_133235	170771	Mm.336594	NM_133235		Khdrbs2	6330586C16Rik|Slim1|Slm1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding
chipseq_peak_1622	chr10	64223012	64223349	+	0	NA	intron (NM_001164376, intron 7 of 17)	MER68|LTR|ERVL	-132925	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_6065	chr16	81434260	81434852	+	0	NA	intron (NM_010954, intron 2 of 15)	intron (NM_010954, intron 2 of 15)	233859	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
chipseq_peak_5838	chr16	63404740	63405715	+	0	NA	Intergenic	Intergenic	458930	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_7987	chr2	94541144	94541855	+	0	NA	Intergenic	Intergenic	-103313	NM_001305258	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding
chipseq_peak_11106	chr5	147054646	147055184	+	0	NA	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	21657	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding
chipseq_peak_1156	chr1	184905531	184906182	+	0	NA	intron (NM_145515, intron 15 of 17)	intron (NM_145515, intron 15 of 17)	-22820	NM_178692	226777	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding
chipseq_peak_5364	chr15	85488804	85490206	+	0	NA	Intergenic	B4A|SINE|B4	13722	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding
chipseq_peak_3111	chr12	69360680	69361891	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-4109	NM_025441	66244	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding
chipseq_peak_14081	chrX	136172298	136172950	+	0	NA	promoter-TSS (NM_001168578)	promoter-TSS (NM_001168578)	-373	NM_001168578	66684	Mm.182094	NM_025703	ENSMUSG00000051579	Tceal8	3930402F23Rik	transcription elongation factor A (SII)-like 8	protein-coding
chipseq_peak_11873	chr6	115890894	115891904	+	0	NA	intron (NM_001167763, intron 12 of 28)	MIRb|SINE|MIR	37871	NM_001167763	81896	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding
chipseq_peak_6875	chr18	55711576	55712324	+	0	NA	Intergenic	Intergenic	-720182	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
chipseq_peak_12345	chr7	91807455	91807955	+	0	NA	intron (NM_011807, intron 3 of 22)	intron (NM_011807, intron 3 of 22)	-254689	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_3021	chr12	58329577	58330108	+	0	NA	Intergenic	Intergenic	-60584	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
chipseq_peak_12130	chr7	54846021	54846307	+	0	NA	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	10919	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_10973	chr5	122617691	122618525	+	0	NA	Intergenic	Intergenic	-3590	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding
chipseq_peak_1429	chr10	31504106	31504583	+	0	NA	intron (NM_001146349, intron 4 of 5)	intron (NM_001146349, intron 4 of 5)	-58423	NM_009413	21987	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding
chipseq_peak_277	chr1	41906010	41906529	+	0	NA	Intergenic	Intergenic	-725017	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_2124	chr11	8910033	8910854	+	0	NA	Intergenic	Intergenic	100748	NM_001303532	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	Hus1 homolog (S. pombe)	protein-coding
chipseq_peak_5809	chr16	59430542	59430907	+	0	NA	intron (NM_001081190, intron 4 of 8)	intron (NM_001081190, intron 4 of 8)	23342	NM_001081190	328699	Mm.451970	NM_001081190	ENSMUSG00000074991	Gabrr3	-	gamma-aminobutyric acid (GABA) receptor, rho 3	protein-coding
chipseq_peak_13484	chr9	41705284	41705655	+	0	NA	Intergenic	MER121|DNA|TcMar?	123543	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA
chipseq_peak_3374	chr12	119981667	119982034	+	0	NA	intron (NM_001294146, intron 1 of 3)	intron (NM_001294146, intron 1 of 3)	35888	NM_001294146	217951	Mm.387395	NM_001160385		Tmem196	Gm528	transmembrane protein 196	protein-coding
chipseq_peak_8555	chr3	28450091	28450492	+	0	NA	intron (NM_001163007, intron 2 of 31)	intron (NM_001163007, intron 2 of 31)	30348	NR_130342	100628591		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA
chipseq_peak_4048	chr13	109921957	109922850	+	0	NA	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	18594	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
chipseq_peak_9825	chr4	55892376	55892727	+	0	NA	Intergenic	Intergenic	-360076	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding
chipseq_peak_7041	chr18	84414366	84415442	+	0	NA	intron (NM_001033341, intron 4 of 8)	intron (NM_001033341, intron 4 of 8)	174600	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding
chipseq_peak_13136	chr8	101462492	101462879	+	0	NA	Intergenic	Intergenic	1322426	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_55	chr1	17042771	17043785	+	0	NA	intron (NM_020604, intron 2 of 4)	intron (NM_020604, intron 2 of 4)	54611	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding
chipseq_peak_13721	chr9	83663924	83665288	+	0	NA	Intergenic	Intergenic	-26869	NR_046066	100039222	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA
chipseq_peak_428	chr1	60035105	60035484	+	0	NA	intron (NM_001316694, intron 1 of 10)	Tigger1|DNA|TcMar-Tigger	7828	NM_001316694	70375	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15	islet cell autoantigen 1-like	protein-coding
chipseq_peak_5993	chr16	75264019	75264428	+	0	NA	Intergenic	Intergenic	321838	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_292	chr1	43543201	43544559	+	0	NA	intron (NM_010879, intron 3 of 4)	intron (NM_010879, intron 3 of 4)	98129	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding
chipseq_peak_913	chr1	147848501	147849537	+	0	NA	Intergenic	Intergenic	1351332	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_6109	chr16	91578755	91579886	+	0	NA	intron (NM_030018, intron 5 of 6)	intron (NM_030018, intron 5 of 6)	18360	NM_030018	77975	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding
chipseq_peak_11664	chr6	93962443	93963316	+	0	NA	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-49189	NM_001286788	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
chipseq_peak_5270	chr15	67950237	67951216	+	0	NA	Intergenic	Intergenic	308130	NM_198644	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
chipseq_peak_9231	chr3	129725358	129725678	+	0	NA	promoter-TSS (NM_001310737)	promoter-TSS (NM_001310737)	-432	NM_001310737	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
chipseq_peak_5591	chr16	31705240	31705530	+	0	NA	intron (NR_045516, intron 4 of 24)	intron (NR_045516, intron 4 of 24)	41450	NM_001252433	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding
chipseq_peak_7411	chr2	7733092	7735220	+	0	NA	Intergenic	Intergenic	-337958	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_426	chr1	59602764	59603616	+	0	NA	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	67644	NM_009460	22218	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding
chipseq_peak_4848	chr15	18511624	18512098	+	0	NA	Intergenic	Intergenic	-142234	NR_045711	70886	Mm.399021	NR_045711		4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA
chipseq_peak_10281	chr5	12356936	12357272	+	0	NA	Intergenic	RMER6C|LTR|ERVK	-26062	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
chipseq_peak_5779	chr16	54098361	54099195	+	0	NA	Intergenic	Intergenic	1184459	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
chipseq_peak_5329	chr15	77941437	77941883	+	0	NA	3' UTR (NM_001168260, exon 9 of 9)	3' UTR (NM_001168260, exon 9 of 9)	-12666	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding
chipseq_peak_7638	chr2	44532045	44532732	+	0	NA	Intergenic	Intergenic	329234	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_2986	chr12	52281334	52281873	+	0	NA	intron (NM_029760, intron 7 of 10)	intron (NM_029760, intron 7 of 10)	183857	NM_029760	76826	Mm.244781	NM_029760		Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding
chipseq_peak_6770	chr18	41905301	41905810	+	0	NA	intron (NM_029942, intron 5 of 6)	intron (NM_029942, intron 5 of 6)	45639	NM_029942	77619	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding
chipseq_peak_8523	chr3	23849108	23849754	+	0	NA	Intergenic	Intergenic	1598061	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA
chipseq_peak_9288	chr3	140147171	140147656	+	0	NA	Intergenic	Intergenic	119164	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA
chipseq_peak_681	chr1	104979010	104979356	+	0	NA	intron (NM_011800, intron 10 of 11)	intron (NM_011800, intron 10 of 11)	210364	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_2366	chr11	58301184	58302163	+	0	NA	Intergenic	(TCTA)n|Simple_repeat|Simple_repeat	-5396	NM_182996	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding
chipseq_peak_9593	chr4	22106888	22107649	+	0	NA	Intergenic	Intergenic	175942	NM_175234	76132	Mm.159689	NM_175234		Faxc	6230409E13Rik|AW742931	failed axon connections homolog (Drosophila)	protein-coding
chipseq_peak_6112	chr16	91931676	91932167	+	0	NA	promoter-TSS (NM_138597)	promoter-TSS (NM_138597)	-291	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
chipseq_peak_7743	chr2	57046984	57047277	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	67908	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding
chipseq_peak_7702	chr2	52668549	52668876	+	0	NA	intron (NM_001285426, intron 2 of 13)	intron (NM_001285426, intron 2 of 13)	7147	NM_001285428	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding
chipseq_peak_7437	chr2	8466510	8468614	+	0	NA	Intergenic	Intergenic	-721953	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_11077	chr5	141115981	141116303	+	0	NA	Intergenic	Intergenic	-115546	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding
chipseq_peak_7942	chr2	79883086	79884481	+	0	NA	intron (NM_001009978, intron 6 of 12)	intron (NM_001009978, intron 6 of 12)	24616	NM_001009978	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding
chipseq_peak_7524	chr2	29421524	29422585	+	0	NA	intron (NM_029615, intron 3 of 4)	intron (NM_029615, intron 3 of 4)	43540	NM_001290489	68975	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding
chipseq_peak_3615	chr13	47389846	47390252	+	0	NA	Intergenic	Intergenic	196046	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding
chipseq_peak_12525	chr7	129301584	129301951	+	0	NA	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	44673	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding
chipseq_peak_13125	chr8	99735637	99737291	+	0	NA	Intergenic	Intergenic	319790	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_3995	chr13	106259875	106260611	+	0	NA	Intergenic	Intergenic	676672	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding
chipseq_peak_8165	chr2	129848145	129848414	+	0	NA	Intergenic	B3|SINE|B2	-46820	NR_029452	654409	Mm.305555	NR_029452		4932416H05Rik	-	RIKEN cDNA 4932416H05 gene	ncRNA
chipseq_peak_12280	chr7	84286717	84288263	+	0	NA	intron (NM_007488, intron 8 of 18)	intron (NM_007488, intron 8 of 18)	122548	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding
chipseq_peak_8382	chr2	168432450	168432812	+	0	NA	Intergenic	Intergenic	157734	NM_001291179	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding
chipseq_peak_12506	chr7	125112882	125113182	+	0	NA	Intergenic	Intergenic	236754	NR_045804	71208	Mm.159465	NM_172408		4933440M02Rik	-	RIKEN cDNA 4933440M02 gene	ncRNA
chipseq_peak_11815	chr6	107538427	107538746	+	0	NA	intron (NM_008516, intron 1 of 1)	intron (NM_008516, intron 1 of 1)	8860	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding
chipseq_peak_10953	chr5	118569994	118570334	+	0	NA	intron (NM_172424, intron 1 of 30)	intron (NM_172424, intron 1 of 30)	9445	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding
chipseq_peak_10045	chr4	93371327	93372484	+	0	NA	Intergenic	Intergenic	-36394	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding
chipseq_peak_10427	chr5	40697395	40698821	+	0	NA	Intergenic	Intergenic	1009583	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding
chipseq_peak_2862	chr12	37916397	37916902	+	0	NA	intron (NM_178681, intron 1 of 24)	Lx5c|LINE|L1	35944	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding
chipseq_peak_743	chr1	122212480	122213617	+	0	NA	Intergenic	Intergenic	-645068	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
chipseq_peak_5998	chr16	75366190	75368348	+	0	NA	Intergenic	Intergenic	218792	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_1903	chr10	104387951	104388308	+	0	NA	Intergenic	Intergenic	100860	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA
chipseq_peak_9738	chr4	38031021	38031975	+	0	NA	Intergenic	Intergenic	-1079754	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_13767	chr9	93777946	93778436	+	0	NA	Intergenic	Intergenic	759890	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
chipseq_peak_7926	chr2	78520074	78521281	+	0	NA	Intergenic	Intergenic	283130	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding
chipseq_peak_4215	chr14	28236161	28236862	+	0	NA	intron (NM_177814, intron 13 of 15)	intron (NM_177814, intron 13 of 15)	-268962	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
chipseq_peak_11045	chr5	133112021	133112358	+	0	NA	Intergenic	Intergenic	-569846	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
chipseq_peak_697	chr1	107993031	107993505	+	0	NA	Intergenic	Intergenic	76009	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
chipseq_peak_12634	chr8	10539366	10539950	+	0	NA	intron (NM_001081397, intron 28 of 35)	intron (NM_001081397, intron 28 of 35)	342796	NR_040705	320014	Mm.403203	NR_040705		B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA
chipseq_peak_4650	chr14	109874036	109874680	+	0	NA	Intergenic	Intergenic	414128	NR_039542	100628607		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA
chipseq_peak_2130	chr11	10546925	10547541	+	0	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-566783	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding
chipseq_peak_2746	chr12	25982593	25983152	+	0	NA	Intergenic	Intergenic	227633	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
chipseq_peak_12991	chr8	70897643	70898445	+	0	NA	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-601	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding
chipseq_peak_13909	chr9	113057370	113058019	+	0	NA	Intergenic	Intergenic	529458	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_10672	chr5	74114071	74114747	+	0	NA	Intergenic	Intergenic	20879	NR_031758	100313943	Mm.46547	NR_031758	ENSMUSG00000093355	Snora26	MBI-6	small nucleolar RNA, H/ACA box 26	snoRNA
chipseq_peak_13130	chr8	100145136	100145991	+	0	NA	Intergenic	Intergenic	728889	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_827	chr1	137331741	137333265	+	0	NA	Intergenic	Intergenic	-372055	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding
chipseq_peak_557	chr1	79824341	79824623	+	0	NA	intron (NM_009255, intron 1 of 8)	intron (NM_009255, intron 1 of 8)	34183	NM_009255	20720	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding
chipseq_peak_7030	chr18	79592062	79592817	+	0	NA	Intergenic	Intergenic	-454456	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding
chipseq_peak_5318	chr15	73360382	73361065	+	0	NA	intron (NM_007982, intron 2 of 31)	intron (NM_007982, intron 2 of 31)	62468	NM_001130409	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding
chipseq_peak_13675	chr9	72219792	72220145	+	0	NA	Intergenic	Intergenic	-54920	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding
chipseq_peak_12527	chr7	129355548	129356060	+	0	NA	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	98710	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding
chipseq_peak_8269	chr2	141875963	141877063	+	0	NA	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	1024951	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_7640	chr2	44570075	44574098	+	0	NA	intron (NM_172662, intron 8 of 10)	intron (NM_172662, intron 8 of 10)	289536	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_5502	chr16	11461576	11461969	+	0	NA	intron (NM_001290148, intron 6 of 13)	intron (NM_001290148, intron 6 of 13)	56124	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding
chipseq_peak_271	chr1	41808134	41813187	+	0	NA	Intergenic	Intergenic	-629408	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_2360	chr11	56054404	56054701	+	0	NA	Intergenic	Intergenic	-13565	NM_153079	216749	Mm.213205	NM_153079	ENSMUSG00000037393	Nmur2	Nmu2r	neuromedin U receptor 2	protein-coding
chipseq_peak_4758	chr14	123400741	123401211	+	0	NA	intron (NM_177393, intron 14 of 43)	intron (NM_177393, intron 14 of 43)	226168	NM_177393	338370	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding
chipseq_peak_6047	chr16	78198909	78199257	+	0	NA	Intergenic	Intergenic	56371	NR_045698	100503619	Mm.387531	NR_045698		E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA
chipseq_peak_9568	chr4	18038666	18039123	+	0	NA	intron (NM_019724, intron 4 of 9)	intron (NM_019724, intron 4 of 9)	185412	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_7654	chr2	45113103	45115206	+	0	NA	promoter-TSS (NM_015753)	promoter-TSS (NM_015753)	-875	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding
chipseq_peak_6630	chr18	20579751	20581244	+	0	NA	intron (NM_007883, intron 5 of 14)	intron (NM_007883, intron 5 of 14)	22381	NM_007883	13511	Mm.345891	NM_007883	ENSMUSG00000044393	Dsg2	AA408168|D18Ertd293e	desmoglein 2	protein-coding
chipseq_peak_5043	chr15	43784071	43784646	+	0	NA	Intergenic	Intergenic	85671	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
chipseq_peak_5965	chr16	73915415	73916435	+	0	NA	intron (NM_175549, intron 24 of 27)	intron (NM_175549, intron 24 of 27)	426142	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_8495	chr3	18713861	18716300	+	0	NA	Intergenic	Intergenic	-234603	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
chipseq_peak_7672	chr2	48098776	48099418	+	0	NA	Intergenic	Intergenic	-715012	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_5730	chr16	49332231	49332770	+	0	NA	Intergenic	Intergenic	275014	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding
chipseq_peak_6877	chr18	55733417	55734390	+	0	NA	Intergenic	Intergenic	-698229	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
chipseq_peak_6017	chr16	76599895	76600883	+	0	NA	Intergenic	Intergenic	-227340	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding
chipseq_peak_3832	chr13	84763533	84763835	+	0	NA	Intergenic	Intergenic	-425793	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
chipseq_peak_5058	chr15	44694931	44695510	+	0	NA	intron (NM_001285840, intron 3 of 6)	intron (NM_001285840, intron 3 of 6)	11268	NM_001285843	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_7277	chr19	48429303	48429978	+	0	NA	intron (NM_025696, intron 2 of 26)	intron (NM_025696, intron 2 of 26)	223615	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding
chipseq_peak_13034	chr8	82932982	82934053	+	0	NA	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	70161	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding
chipseq_peak_1912	chr10	105377674	105378262	+	0	NA	intron (NM_177368, intron 2 of 11)	intron (NM_177368, intron 2 of 11)	196511	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
chipseq_peak_13831	chr9	103726371	103727119	+	0	NA	intron (NM_178638, intron 2 of 5)	intron (NM_178638, intron 2 of 5)	35092	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding
chipseq_peak_12623	chr8	10096506	10097418	+	0	NA	Intergenic	Intergenic	-56961	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
chipseq_peak_6654	chr18	23435628	23437380	+	0	NA	intron (NM_207650, intron 1 of 20)	intron (NM_207650, intron 1 of 20)	21095	NM_001285807	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding
chipseq_peak_7633	chr2	44457714	44457974	+	0	NA	Intergenic	Lx8b|LINE|L1	-392520	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_2472	chr11	86210269	86212692	+	0	NA	TTS (NR_130958)	TTS (NR_130958)	10120	NR_130958	74038	Mm.171304	NR_130958		Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA
chipseq_peak_5999	chr16	75381464	75382861	+	0	NA	Intergenic	Intergenic	203899	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_5353	chr15	83906503	83906744	+	0	NA	intron (NM_029946, intron 22 of 31)	intron (NM_029946, intron 22 of 31)	12750	NM_001161629	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding
chipseq_peak_2194	chr11	25171011	25171468	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-154868	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_13657	chr9	65913150	65913527	+	0	NA	intron (NM_173185, intron 1 of 13)	intron (NM_173185, intron 1 of 13)	4328	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding
chipseq_peak_9739	chr4	38505839	38506643	+	0	NA	Intergenic	Intergenic	-944052	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
chipseq_peak_8292	chr2	142910796	142911597	+	0	NA	Intergenic	L1ME1|LINE|L1	8231	NR_131921	75053	Mm.72638	NR_131921		Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA
chipseq_peak_5282	chr15	68967572	68968179	+	0	NA	intron (NM_010158, intron 1 of 8)	intron (NM_010158, intron 1 of 8)	39455	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
chipseq_peak_6419	chr17	73120473	73121019	+	0	NA	intron (NM_001081071, intron 1 of 5)	L1MD1|LINE|L1	12761	NM_001081071	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding
chipseq_peak_8317	chr2	148528350	148528676	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-84978	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding
chipseq_peak_9170	chr3	120791626	120792825	+	0	NA	intron (NR_130170, intron 2 of 18)	intron (NR_130170, intron 2 of 18)	94507	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_2541	chr11	102069592	102070305	+	0	NA	intron (NM_016695, intron 3 of 12)	L1MC4a|LINE|L1	18567	NM_016695	50997	Mm.36242	NM_016695	ENSMUSG00000017314	Mpp2	D11Bwg0652e|Dlg2|Dlgh2|Pals4	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding
chipseq_peak_5789	chr16	55390431	55390719	+	0	NA	Intergenic	Intergenic	-104156	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA
chipseq_peak_9820	chr4	55077635	55078006	+	0	NA	intron (NM_172867, intron 11 of 12)	intron (NM_172867, intron 11 of 12)	129875	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding
chipseq_peak_8320	chr2	149613733	149614947	+	0	NA	Intergenic	L1MA6|LINE|L1	209091	NM_021405	58214	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding
chipseq_peak_8490	chr3	18453323	18454586	+	0	NA	Intergenic	Intergenic	26523	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
chipseq_peak_14108	chrX	158284245	158285597	+	0	NA	Intergenic	Intergenic	-241724	NM_001310719	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding
chipseq_peak_7684	chr2	49776914	49777272	+	0	NA	Intergenic	Intergenic	-10593	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding
chipseq_peak_3684	chr13	68889956	68890350	+	0	NA	intron (NM_153534, intron 2 of 24)	intron (NM_153534, intron 2 of 24)	109388	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding
chipseq_peak_10108	chr4	104643407	104645399	+	0	NA	intron (NR_104385, intron 4 of 15)	intron (NR_104385, intron 4 of 15)	-121914	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding
chipseq_peak_7158	chr19	24102547	24103271	+	0	NA	intron (NM_011597, intron 17 of 22)	B4A|SINE|B4	71231	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding
chipseq_peak_2450	chr11	80877189	80877577	+	0	NA	Intergenic	Intergenic	18994	NM_029367	75622	Mm.26988	NM_029367	ENSMUSG00000053184	Spaca3	1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1	sperm acrosome associated 3	protein-coding
chipseq_peak_12176	chr7	64915141	64915545	+	0	NA	intron (NM_183087, intron 2 of 9)	MER34|LTR|ERV1	-42303	NM_023239	66647	Mm.19944	NM_023239		Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|mage-g1	necdin-like 2	protein-coding
chipseq_peak_4796	chr15	11633725	11634140	+	0	NA	Intergenic	Intergenic	-234274	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding
chipseq_peak_917	chr1	149198750	149199963	+	0	NA	Intergenic	Intergenic	723083	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
chipseq_peak_5229	chr15	65568110	65568503	+	0	NA	Intergenic	Arthur1A|DNA|hAT-Tip100	-218735	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
chipseq_peak_11179	chr6	12606650	12606990	+	0	NA	intron (NM_001164805, intron 1 of 26)	intron (NM_001164805, intron 1 of 26)	142433	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
chipseq_peak_3445	chr13	16435479	16435971	+	0	NA	Intergenic	Intergenic	421250	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_13422	chr9	30344993	30346217	+	0	NA	Intergenic	Intergenic	-81724	NM_028874	102607	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding
chipseq_peak_1757	chr10	87351321	87352103	+	0	NA	Intergenic	Intergenic	141948	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute complex homolog 1 (Drosophila)	protein-coding
chipseq_peak_8081	chr2	110565087	110565358	+	0	NA	Intergenic	Intergenic	-32077	NM_001177624	241612	Mm.277148	NM_001003915		Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding
chipseq_peak_1021	chr1	167941876	167942459	+	0	NA	Intergenic	Intergenic	252609	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding
chipseq_peak_2995	chr12	53033208	53034003	+	0	NA	intron (NM_198111, intron 9 of 13)	intron (NM_198111, intron 9 of 13)	-215072	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding
chipseq_peak_9067	chr3	108174580	108175169	+	0	NA	Intergenic	Intergenic	-11415	NM_146137	229715	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding
chipseq_peak_62	chr1	18191642	18192180	+	0	NA	Intergenic	Intergenic	31653	NR_002879	654454	Mm.383637	NR_002879	ENSMUSG00000070977	Defb44-ps	Defb44|Defb49|Defb49-ps|EG574082	defensin beta 44, pseudogene	pseudo
chipseq_peak_7692	chr2	50179090	50179603	+	0	NA	intron (NM_177139, intron 3 of 4)	intron (NM_177139, intron 3 of 4)	112917	NM_177139	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding
chipseq_peak_8877	chr3	73755670	73757148	+	0	NA	Intergenic	Intergenic	-47994	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding
chipseq_peak_5202	chr15	62638369	62639026	+	0	NA	Intergenic	Intergenic	-419246	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_1530	chr10	46826569	46827429	+	0	NA	Intergenic	Intergenic	582250	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA
chipseq_peak_949	chr1	156197459	156198199	+	0	NA	intron (NM_177838, intron 1 of 4)	Charlie22a|DNA|hAT-Charlie	7197	NM_177838	329274	Mm.150857	NM_177838	ENSMUSG00000015484	Fam163a	A230106N23Rik	family with sequence similarity 163, member A	protein-coding
chipseq_peak_2030	chr10	118711343	118711997	+	0	NA	Intergenic	Intergenic	-155145	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA
chipseq_peak_6792	chr18	45015487	45016106	+	0	NA	Intergenic	Intergenic	187131	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding
chipseq_peak_561	chr1	80501845	80502891	+	0	NA	intron (NM_001285927, intron 55 of 55)	intron (NM_001285927, intron 55 of 55)	56436	NR_040460	72208	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	Jr3	RIKEN cDNA 1700016L21 gene	ncRNA
chipseq_peak_13581	chr9	55710288	55712454	+	0	NA	intron (NM_001081341, intron 24 of 32)	intron (NM_001081341, intron 24 of 32)	170222	NM_027397	104360	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding
chipseq_peak_3358	chr12	117527459	117529254	+	0	NA	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	11877	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chipseq_peak_6456	chr17	81199614	81200396	+	0	NA	Intergenic	Intergenic	-134920	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding
chipseq_peak_9316	chr3	143283374	143284063	+	0	NA	Intergenic	Intergenic	40663	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA
chipseq_peak_10919	chr5	112648844	112649805	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-59328	NR_045397	67325	Mm.490791	NR_045396	ENSMUSG00000097962	1700034G24Rik	-	RIKEN cDNA 1700034G24 gene	ncRNA
chipseq_peak_10016	chr4	87592290	87593669	+	0	NA	Intergenic	Intergenic	213344	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	protein-coding
chipseq_peak_888	chr1	144127769	144128313	+	0	NA	Intergenic	Intergenic	49331	NM_153171	246709	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding
chipseq_peak_10497	chr5	51913086	51913410	+	0	NA	Intergenic	Intergenic	222769	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA
chipseq_peak_12815	chr8	46216430	46216912	+	0	NA	Intergenic	Intergenic	-5662	NM_007450	11739	Mm.16228	NM_007450		Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding
chipseq_peak_10729	chr5	82396773	82397462	+	0	NA	Intergenic	Intergenic	401948	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
chipseq_peak_10866	chr5	104370560	104370915	+	0	NA	Intergenic	Intergenic	45408	NM_053172	94111	Mm.196672	NM_053172	ENSMUSG00000053863	Mepe	Of45	matrix extracellular phosphoglycoprotein with ASARM motif (bone)	protein-coding
chipseq_peak_884	chr1	143640625	143642032	+	0	NA	5' UTR (NM_020025, exon 1 of 2)	5' UTR (NM_020025, exon 1 of 2)	631	NM_020025	26878	Mm.285580	NM_020025		B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding
chipseq_peak_3165	chr12	74303043	74303961	+	0	NA	Intergenic	Intergenic	6028	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding
chipseq_peak_12567	chr7	138673146	138673445	+	0	NA	Intergenic	Intergenic	119053	NR_131022	75187	Mm.410810	NR_131022		4930543N07Rik	-	RIKEN cDNA 4930543N07 gene	ncRNA
chipseq_peak_9754	chr4	43058508	43058968	+	0	NA	promoter-TSS (NM_001081413)	promoter-TSS (NM_001081413)	-215	NM_001081413	22249	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding
chipseq_peak_4393	chr14	69985032	69986229	+	0	NA	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-91815	NM_018781	13655	Mm.103737	NM_018781		Egr3	Pilot	early growth response 3	protein-coding
chipseq_peak_1439	chr10	32813559	32815973	+	0	NA	intron (NM_001013411, intron 1 of 6)	intron (NM_001013411, intron 1 of 6)	75149	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
chipseq_peak_12194	chr7	70103991	70104871	+	0	NA	Intergenic	Intergenic	233391	NR_131145	624549	Mm.116344	NR_131144		Gm29683	-	predicted gene, 29683	ncRNA
chipseq_peak_5647	chr16	40767870	40768565	+	0	NA	Intergenic	Intergenic	-765125	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_10444	chr5	44414295	44414965	+	0	NA	Intergenic	Intergenic	-188024	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding
chipseq_peak_9688	chr4	31487062	31487880	+	0	NA	Intergenic	Intergenic	-476636	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_8201	chr2	135033037	135033521	+	0	NA	intron (NM_019677, intron 3 of 32)	MER112|DNA|hAT-Charlie	182337	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA
chipseq_peak_12253	chr7	77572656	77573204	+	0	NA	Intergenic	Intergenic	1004908	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
chipseq_peak_7889	chr2	73696877	73697807	+	0	NA	intron (NM_001113246, intron 5 of 12)	intron (NM_001113246, intron 5 of 12)	-36919	NM_175752	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding
chipseq_peak_2619	chr11	117414965	117416472	+	0	NA	TTS (NR_132097)	TTS (NR_132097)	1329	NR_132097	105827746	Mm.388009	NR_132097		Gm11729	OTTMUSG00000003784	predicted gene 11729	ncRNA
chipseq_peak_12159	chr7	58473187	58473633	+	0	NA	Intergenic	Intergenic	-184792	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding
chipseq_peak_13485	chr9	41719851	41720278	+	0	NA	Intergenic	PB1D10|SINE|Alu	138138	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA
chipseq_peak_8087	chr2	112296328	112296633	+	0	NA	intron (NM_133648, intron 1 of 24)	L1MEj|LINE|L1	11792	NM_133648	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding
chipseq_peak_11181	chr6	12711896	12712289	+	0	NA	intron (NM_001164805, intron 1 of 26)	intron (NM_001164805, intron 1 of 26)	37161	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
chipseq_peak_10963	chr5	121392671	121392927	+	0	NA	Intergenic	Intergenic	-5183	NM_172722	231713	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding
chipseq_peak_12459	chr7	114580529	114580812	+	0	NA	Intergenic	Intergenic	-17698	NR_110407	244209	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding
chipseq_peak_7478	chr2	15643677	15644463	+	0	NA	intron (NM_001310455, intron 11 of 38)	intron (NM_001310455, intron 11 of 38)	117591	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding
chipseq_peak_634	chr1	96922053	96924243	+	0	NA	intron (NR_120500, intron 11 of 14)	intron (NR_120500, intron 11 of 14)	-50977	NM_172658	227394	Mm.11662	NM_172658		Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding
chipseq_peak_13624	chr9	61102462	61103492	+	0	NA	TTS (NR_105026)	TTS (NR_105026)	2409	NR_105026	66785	Mm.158134	NR_105026		4933433G08Rik	-	RIKEN cDNA 4933433G08 gene	ncRNA
chipseq_peak_5078	chr15	45452654	45454334	+	0	NA	Intergenic	Intergenic	-338560	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding
chipseq_peak_5624	chr16	38924951	38925417	+	0	NA	intron (NM_170599, intron 1 of 6)	intron (NM_170599, intron 1 of 6)	22839	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_12591	chr8	7130523	7132043	+	0	NA	Intergenic	Intergenic	1529490	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_5595	chr16	32939228	32939700	+	0	NA	intron (NM_001310672, intron 1 of 19)	intron (NM_001310672, intron 1 of 19)	25364	NM_001081255	70144	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding
chipseq_peak_3799	chr13	83451612	83453282	+	0	NA	Intergenic	Intergenic	-51587	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_7742	chr2	56784568	56785256	+	0	NA	promoter-TSS (NR_105751)	promoter-TSS (NR_105751)	-899	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
chipseq_peak_8462	chr3	13252986	13254804	+	0	NA	Intergenic	Intergenic	-217760	NM_178631	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding
chipseq_peak_6488	chr17	86150654	86151046	+	0	NA	Intergenic	Intergenic	-5675	NM_030133	78586	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding
chipseq_peak_3864	chr13	90357957	90358999	+	0	NA	Intergenic	Intergenic	268811	NM_025335	66074	Mm.241387	NM_025335		Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding
chipseq_peak_11942	chr6	137870247	137871042	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	116067	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	protein-coding
chipseq_peak_5020	chr15	41296132	41297514	+	0	NA	Intergenic	Intergenic	-150659	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
chipseq_peak_2478	chr11	86434003	86434956	+	0	NA	intron (NR_030571, intron 1 of 2)	intron (NR_030571, intron 1 of 2)	18635	NR_030571	100124487		NR_030571	ENSMUSG00000077049	Mir467c	Mirn467c	microRNA 467c	ncRNA
chipseq_peak_1090	chr1	176996213	176997660	+	0	NA	intron (NM_029756, intron 16 of 17)	intron (NM_029756, intron 16 of 17)	-160803	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_7958	chr2	82893801	82894376	+	0	NA	Intergenic	Intergenic	-750490	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
chipseq_peak_3583	chr13	45397856	45398269	+	0	NA	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	8320	NM_153789	218203	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding
chipseq_peak_7307	chr19	54836391	54836809	+	0	NA	Intergenic	Intergenic	262847	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
chipseq_peak_6856	chr18	54630224	54630626	+	0	NA	intron (NR_045400, intron 1 of 2)	intron (NR_045400, intron 1 of 2)	18681	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA
chipseq_peak_7789	chr2	61344376	61344988	+	0	NA	Intergenic	Intergenic	-233904	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding
chipseq_peak_7994	chr2	95658544	95658840	+	0	NA	Intergenic	Intergenic	-659477	NM_001289743	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_12537	chr7	132171716	132172263	+	0	NA	Intergenic	Intergenic	-17248	NM_018867	55987	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding
chipseq_peak_6260	chr17	45063736	45064275	+	0	NA	intron (NM_178652, intron 11 of 11)	intron (NM_178652, intron 11 of 11)	-183120	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding
chipseq_peak_12952	chr8	64946908	64948338	+	0	NA	intron (NM_028427, intron 1 of 5)	CpG	438	NM_028427	73067	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding
chipseq_peak_8272	chr2	141954796	141955322	+	0	NA	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	946405	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_7184	chr19	27804018	27805551	+	0	NA	intron (NM_011265, intron 11 of 16)	intron (NM_011265, intron 11 of 16)	178164	NM_001166414	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding
chipseq_peak_12926	chr8	59911181	59912199	+	0	NA	Intergenic	Intergenic	86041	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
chipseq_peak_2499	chr11	90175633	90176921	+	0	NA	Intergenic	Intergenic	-73199	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding
chipseq_peak_5209	chr15	62811947	62812857	+	0	NA	Intergenic	Intergenic	-592951	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_14127	chrX	161653100	161653625	+	0	NA	Intergenic	Intergenic	-63674	NM_001103367	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding
chipseq_peak_12063	chr7	36785875	36787220	+	0	NA	Intergenic	Intergenic	88429	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding
chipseq_peak_3339	chr12	107285657	107285980	+	0	NA	Intergenic	Intergenic	449670	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA
chipseq_peak_4177	chr14	19817913	19818193	+	0	NA	intron (NM_026528, intron 3 of 7)	intron (NM_026528, intron 3 of 7)	5770	NM_026528	68045	Mm.21932	NM_026528	ENSMUSG00000021807	2700060E02Rik	-	RIKEN cDNA 2700060E02 gene	protein-coding
chipseq_peak_11757	chr6	103060124	103060947	+	0	NA	Intergenic	Intergenic	266151	NR_105792	102466636		NR_105792	ENSMUSG00000098533	Mir6373	Gm27870|mmu-mir-6373	microRNA 6373	ncRNA
chipseq_peak_11120	chr5	149439449	149440567	+	0	NA	intron (NM_001310765, intron 1 of 5)	intron (NM_001310765, intron 1 of 5)	348	NM_001310764	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding
chipseq_peak_1333	chr10	20948448	20948675	+	0	NA	Intergenic	Intergenic	-3986	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding
chipseq_peak_12953	chr8	65159075	65159667	+	0	NA	Intergenic	Intergenic	-29834	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA
chipseq_peak_5849	chr16	63958178	63958596	+	0	NA	Intergenic	Intergenic	-94230	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_11945	chr6	138436638	138437188	+	0	NA	intron (NM_207222, intron 2 of 4)	intron (NM_207222, intron 2 of 4)	-7060	NR_126082	102632192	Mm.417247	NR_126082	ENSMUSG00000107675	Gm30332	-	predicted gene, 30332	ncRNA
chipseq_peak_7703	chr2	52715091	52716214	+	0	NA	intron (NM_019667, intron 6 of 13)	intron (NM_019667, intron 6 of 13)	26497	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding
chipseq_peak_7039	chr18	84241551	84242866	+	0	NA	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	154050	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding
chipseq_peak_7200	chr19	28628292	28628781	+	0	NA	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-49688	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_9958	chr4	80474655	80476377	+	0	NA	Intergenic	Intergenic	-358697	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_12227	chr7	75047738	75049316	+	0	NA	intron (NR_131122, intron 2 of 7)	intron (NR_131122, intron 2 of 7)	18316	NR_131122	75205	Mm.399304	NR_131122		4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA
chipseq_peak_10491	chr5	50260419	50260979	+	0	NA	Intergenic	Intergenic	7937	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
chipseq_peak_10384	chr5	31808175	31808809	+	0	NA	intron (NM_181279, intron 6 of 13)	intron (NM_181279, intron 6 of 13)	110442	NM_181281	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding
chipseq_peak_8806	chr3	65262280	65262974	+	0	NA	intron (NM_001289450, intron 2 of 14)	intron (NM_001289450, intron 2 of 14)	40058	NR_126080	102637797	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA
chipseq_peak_6683	chr18	26841608	26842042	+	0	NA	Intergenic	Intergenic	-1087842	NM_001146294	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
chipseq_peak_1674	chr10	69098289	69099145	+	0	NA	Intergenic	Intergenic	-109835	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding
chipseq_peak_12115	chr7	53997819	53998606	+	0	NA	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-106323	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
chipseq_peak_3786	chr13	83104523	83105573	+	0	NA	Intergenic	Intergenic	-398986	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_9062	chr3	106936073	106936438	+	0	NA	Intergenic	L1M3|LINE|L1	-99907	NM_008418	16491	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding
chipseq_peak_13126	chr8	99755552	99756285	+	0	NA	Intergenic	Intergenic	339244	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_4052	chr13	110116718	110117893	+	0	NA	intron (NM_023852, intron 3 of 4)	intron (NM_023852, intron 3 of 4)	162901	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding
chipseq_peak_3656	chr13	58560856	58561261	+	0	NA	intron (NM_022317, intron 14 of 17)	intron (NM_022317, intron 14 of 17)	49819	NM_022317	114304	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding
chipseq_peak_7174	chr19	26920778	26921224	+	0	NA	Intergenic	MYSERV-int|LTR|ERVK	35076	NM_001033407	329047	Mm.293289	NM_001033407	ENSMUSG00000074913	Gm815	-	predicted gene 815	protein-coding
chipseq_peak_9355	chr3	149247018	149248301	+	0	NA	Intergenic	Intergenic	-27078	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_10081	chr4	102254261	102255063	+	0	NA	promoter-TSS (NM_019840)	promoter-TSS (NM_019840)	-80	NM_001177983	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding
chipseq_peak_6903	chr18	59291600	59292317	+	0	NA	intron (NM_001081328, intron 2 of 2)	intron (NM_001081328, intron 2 of 2)	116618	NM_001081328	78923	Mm.84007	NM_001081328		Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding
chipseq_peak_1694	chr10	70993313	70994162	+	0	NA	intron (NM_031397, intron 3 of 20)	intron (NM_031397, intron 3 of 20)	165897	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	bicaudal C homolog 1 (Drosophila)	protein-coding
chipseq_peak_310	chr1	47346882	47348078	+	0	NA	Intergenic	Lx7|LINE|L1	119645	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_7909	chr2	76866909	76867245	+	0	NA	intron (NM_011652, intron 108 of 312)	intron (NM_011652, intron 108 of 312)	115470	NM_011652	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding
chipseq_peak_5232	chr15	65703442	65703884	+	0	NA	Intergenic	Intergenic	-83378	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
chipseq_peak_10983	chr5	125829402	125829888	+	0	NA	Intergenic	Intergenic	297227	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding
chipseq_peak_9669	chr4	30400218	30401063	+	0	NA	Intergenic	Intergenic	-263956	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
chipseq_peak_14033	chrX	69801160	69803550	+	0	NA	intron (NM_008032, intron 8 of 19)	intron (NM_008032, intron 8 of 19)	-142926	NM_029316	75509	Mm.233475	NM_029316	ENSMUSG00000059690	1700020N15Rik	-	RIKEN cDNA 1700020N15 gene	protein-coding
chipseq_peak_14037	chrX	75323433	75323963	+	0	NA	intron (NM_007977, intron 10 of 25)	MER57C2|LTR|ERV1	56343	NM_001161373	14069	Mm.1805	NM_007977	ENSMUSG00000031196	F8	Cf-8|Cf8|FVIII	coagulation factor VIII	protein-coding
chipseq_peak_13543	chr9	50968946	50969966	+	0	NA	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	39617	NM_178710	235344	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding
chipseq_peak_975	chr1	160276312	160277427	+	0	NA	intron (NM_001038621, intron 2 of 8)	Tigger12|DNA|TcMar-Tigger	19103	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA
chipseq_peak_9855	chr4	66613629	66614684	+	0	NA	Intergenic	Intergenic	-209673	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
chipseq_peak_3721	chr13	77295593	77296040	+	0	NA	intron (NM_001145676, intron 12 of 19)	intron (NM_001145676, intron 12 of 19)	160280	NM_001145676	72371	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding
chipseq_peak_2851	chr12	36949275	36949651	+	0	NA	Intergenic	Intergenic	133258	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA
chipseq_peak_7585	chr2	42798891	42799236	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-145465	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding
chipseq_peak_7111	chr19	19436595	19437370	+	0	NA	Intergenic	Eulor9B|DNA|DNA	-325786	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
chipseq_peak_11364	chr6	34148489	34149266	+	0	NA	Intergenic	Intergenic	28177	NM_021435	58246	Mm.245527	NM_021435		Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding
chipseq_peak_11572	chr6	64671068	64671377	+	0	NA	Intergenic	Intergenic	-57924	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
chipseq_peak_8507	chr3	20793792	20794668	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-427053	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
chipseq_peak_849	chr1	139279081	139279536	+	0	NA	intron (NM_133239, intron 5 of 11)	intron (NM_133239, intron 5 of 11)	97768	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding
chipseq_peak_7365	chr2	4978037	4978493	+	0	NA	intron (NM_001311208, intron 2 of 2)	intron (NM_001311208, intron 2 of 2)	2143	NM_026754	68527	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding
chipseq_peak_3899	chr13	93560402	93560789	+	0	NA	Intergenic	Intergenic	-60787	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding
chipseq_peak_13595	chr9	59013417	59013730	+	0	NA	intron (NM_008684, intron 1 of 28)	intron (NM_008684, intron 1 of 28)	22868	NM_008684	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding
chipseq_peak_11530	chr6	55866032	55866322	+	0	NA	intron (NM_001081665, intron 1 of 13)	intron (NM_001081665, intron 1 of 13)	29159	NM_001081665	232016	Mm.333084	NM_001081665	ENSMUSG00000037973	Ccdc129	D530004J12Rik|Gm458	coiled-coil domain containing 129	protein-coding
chipseq_peak_10515	chr5	55357089	55357721	+	0	NA	Intergenic	Intergenic	1007413	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
chipseq_peak_10927	chr5	114698217	114698704	+	0	NA	Intergenic	Intergenic	-7525	NM_019821	56356	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding
chipseq_peak_9577	chr4	19497049	19498216	+	0	NA	intron (NM_013927, intron 15 of 17)	intron (NM_013927, intron 15 of 17)	72472	NM_027769	70568	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding
chipseq_peak_5275	chr15	68215119	68215640	+	0	NA	intron (NM_001145888, intron 2 of 15)	intron (NM_001145888, intron 2 of 15)	43477	NM_198644	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
chipseq_peak_12631	chr8	10484279	10484717	+	0	NA	intron (NM_001081397, intron 23 of 35)	intron (NM_001081397, intron 23 of 35)	330575	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
chipseq_peak_7560	chr2	38023214	38024084	+	0	NA	intron (NM_146122, intron 8 of 21)	intron (NM_146122, intron 8 of 21)	247400	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding
chipseq_peak_6797	chr18	45798340	45798815	+	0	NA	intron (NR_040342, intron 3 of 3)	intron (NR_040342, intron 3 of 3)	238423	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding
chipseq_peak_2598	chr11	111450474	111452501	+	0	NA	Intergenic	Intergenic	385323	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
chipseq_peak_10477	chr5	48345577	48346060	+	0	NA	Intergenic	Intergenic	-26574	NM_025755	66768	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding
chipseq_peak_8202	chr2	135049023	135049669	+	0	NA	intron (NM_019677, intron 3 of 32)	intron (NM_019677, intron 3 of 32)	166270	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA
chipseq_peak_6929	chr18	66201530	66202183	+	0	NA	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	17477	NR_030467	751558		NR_030467	ENSMUSG00000076147	Mir694	Mirn694|mir-694|mmu-mir-694	microRNA 694	ncRNA
chipseq_peak_526	chr1	75652596	75654115	+	0	NA	Intergenic	Intergenic	107089	NM_009208	20536	Mm.5053	NM_009208		Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding
chipseq_peak_8381	chr2	168352717	168353361	+	0	NA	Intergenic	Intergenic	-83708	NM_001081134	241794	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275|OTTMUSG00000016048	potassium voltage-gated channel, subfamily G, member 1	protein-coding
chipseq_peak_13117	chr8	99040030	99040768	+	0	NA	intron (NR_133570, intron 9 of 10)	intron (NR_133570, intron 9 of 10)	28512	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA
chipseq_peak_9496	chr4	12243077	12243592	+	0	NA	Intergenic	Intergenic	-71319	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
chipseq_peak_5819	chr16	61599236	61599756	+	0	NA	Intergenic	Intergenic	-993965	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding
chipseq_peak_9672	chr4	30853676	30854146	+	0	NA	intron (NR_040655, intron 6 of 6)	intron (NR_040655, intron 6 of 6)	189315	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
chipseq_peak_5338	chr15	80530403	80531708	+	0	NA	intron (NM_001163189, intron 2 of 5)	intron (NM_001163189, intron 2 of 5)	29415	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding
chipseq_peak_6006	chr16	75488550	75489652	+	0	NA	Intergenic	Intergenic	96960	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_2794	chr12	30128730	30129709	+	0	NA	intron (NM_009417, intron 2 of 16)	intron (NM_009417, intron 2 of 16)	3405	NM_009417	22018	Mm.4991	NM_009417	ENSMUSG00000020673	Tpo	-	thyroid peroxidase	protein-coding
chipseq_peak_12230	chr7	75104060	75104403	+	0	NA	Intergenic	Intergenic	74020	NR_131122	75205	Mm.399304	NR_131122		4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA
chipseq_peak_5641	chr16	40267616	40268532	+	0	NA	Intergenic	Intergenic	-1265268	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_1297	chr10	15866855	15867386	+	0	NA	Intergenic	Intergenic	75343	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA
chipseq_peak_931	chr1	151956928	151957592	+	0	NA	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	133060	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding
chipseq_peak_10362	chr5	23095104	23095412	+	0	NA	intron (NM_001081231, intron 1 of 3)	intron (NM_001081231, intron 1 of 3)	339095	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA
chipseq_peak_1708	chr10	72837691	72838413	+	0	NA	Intergenic	Intergenic	183206	NM_001293684	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding
chipseq_peak_7458	chr2	11765614	11766168	+	0	NA	intron (NM_015792, intron 3 of 20)	intron (NM_015792, intron 3 of 20)	11636	NM_015792	50755	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding
chipseq_peak_5773	chr16	52972576	52974146	+	0	NA	Intergenic	LTR48|LTR|ERV1	-157617	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA
chipseq_peak_3913	chr13	95822767	95823378	+	0	NA	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	68850	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding
chipseq_peak_4589	chr14	101056796	101057189	+	0	NA	Intergenic	Intergenic	143077	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding
chipseq_peak_6045	chr16	77941861	77942264	+	0	NA	Intergenic	L1MB8|LINE|L1	295789	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_10059	chr4	97236016	97236559	+	0	NA	Intergenic	Intergenic	-345656	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
chipseq_peak_5515	chr16	13557480	13558144	+	0	NA	intron (NM_028761, intron 22 of 23)	intron (NM_028761, intron 22 of 23)	-37393	NR_037997	70100	Mm.158330	NR_037997	ENSMUSG00000099411	2310015D24Rik	-	RIKEN cDNA 2310015D24 gene	ncRNA
chipseq_peak_9979	chr4	82439687	82440791	+	0	NA	intron (NM_001286131, intron 2 of 9)	intron (NM_001286131, intron 2 of 9)	65540	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding
chipseq_peak_5697	chr16	44691575	44692101	+	0	NA	Intergenic	Intergenic	-32463	NM_145972	212547	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding
chipseq_peak_13118	chr8	99223739	99224078	+	0	NA	intron (NR_133570, intron 4 of 10)	intron (NR_133570, intron 4 of 10)	192563	NM_001285913	12564	Mm.441131	NM_007667	ENSMUSG00000036510	Cdh8	AI851472|cad8	cadherin 8	protein-coding
chipseq_peak_10561	chr5	62043316	62043994	+	0	NA	Intergenic	Intergenic	234812	NM_019468	14380	Mm.347430	NM_019468		G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding
chipseq_peak_5760	chr16	52121971	52122625	+	0	NA	intron (NM_001033238, intron 4 of 17)	LTR40b|LTR|ERVL	90749	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
chipseq_peak_9952	chr4	79530838	79533185	+	0	NA	Intergenic	Intergenic	937964	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_6250	chr17	43820829	43822560	+	0	NA	intron (NM_001286653, intron 1 of 4)	ORR1G|LTR|ERVL-MaLR	17691	NM_001286653	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding
chipseq_peak_5994	chr16	75285703	75286326	+	0	NA	Intergenic	Intergenic	300047	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_9711	chr4	33735680	33736653	+	0	NA	Intergenic	Intergenic	-188466	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding
chipseq_peak_9220	chr3	127188236	127189127	+	0	NA	Intergenic	Intergenic	27376	NR_105030	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA
chipseq_peak_983	chr1	160628243	160629269	+	0	NA	intron (NM_013862, intron 12 of 20)	intron (NM_013862, intron 12 of 20)	-51003	NM_001146330	620246	Mm.478780	NM_001146330		Gpr52	EG620246	G protein-coupled receptor 52	protein-coding
chipseq_peak_1831	chr10	97077658	97078528	+	0	NA	Intergenic	Intergenic	42325	NR_045358	75301	Mm.108650	NR_045358		4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA
chipseq_peak_1675	chr10	69106596	69107497	+	0	NA	Intergenic	Intergenic	-101506	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding
chipseq_peak_4332	chr14	60733660	60734046	+	0	NA	intron (NM_001310594, intron 1 of 9)	intron (NM_001310594, intron 1 of 9)	949	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding
chipseq_peak_2248	chr11	36238877	36239378	+	0	NA	intron (NM_011856, intron 5 of 28)	L4_C_Mam|LINE|RTE-X	-259038	NM_170779	211652	Mm.31267	NM_170779		Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding
chipseq_peak_12841	chr8	49462468	49463141	+	0	NA	Intergenic	Intergenic	-788114	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_4539	chr14	92955355	92955841	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	933290	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_2584	chr11	110595454	110595947	+	0	NA	Intergenic	Intergenic	196578	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
chipseq_peak_10083	chr4	102495645	102497157	+	0	NA	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-73659	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding
chipseq_peak_6093	chr16	87864470	87864843	+	0	NA	Intergenic	Intergenic	165702	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1	protein-coding
chipseq_peak_8413	chr2	178129332	178129718	+	0	NA	intron (NM_001177789, intron 1 of 12)	intron (NM_001177789, intron 1 of 12)	10550	NM_001177789	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding
chipseq_peak_5429	chr15	95394919	95396147	+	0	NA	intron (NM_001289653, intron 10 of 20)	intron (NM_001289653, intron 10 of 20)	132719	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding
chipseq_peak_13899	chr9	112714720	112715458	+	0	NA	Intergenic	Intergenic	458515	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_13969	chrX	14884310	14884984	+	0	NA	Intergenic	Intergenic	226842	NR_033171	67395	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo
chipseq_peak_5705	chr16	46573961	46574738	+	0	NA	Intergenic	Intergenic	-77382	NM_021496	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
chipseq_peak_4826	chr15	14322974	14323398	+	0	NA	Intergenic	L1MB2|LINE|L1	-1149511	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_13610	chr9	59655743	59656473	+	0	NA	promoter-TSS (NM_011099)	promoter-TSS (NM_011099)	-260	NM_011099	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding
chipseq_peak_12399	chr7	97147855	97148574	+	0	NA	intron (NM_001162477, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	66463	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding
chipseq_peak_11920	chr6	135905472	135906840	+	0	NA	intron (NM_008171, intron 5 of 14)	intron (NM_008171, intron 5 of 14)	247243	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA
chipseq_peak_2427	chr11	77152268	77152644	+	0	NA	intron (NM_176965, intron 2 of 17)	B3|SINE|B2	36512	NM_176965	319634	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding
chipseq_peak_3383	chr13	5513589	5513995	+	0	NA	Intergenic	Intergenic	344300	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
chipseq_peak_10661	chr5	72710934	72711241	+	0	NA	intron (NM_001289495, intron 9 of 14)	intron (NM_001289495, intron 9 of 14)	25515	NM_013698	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding
chipseq_peak_11360	chr6	33883477	33883983	+	0	NA	intron (NM_009148, intron 14 of 17)	Eulor9A|DNA|DNA	-145718	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding
chipseq_peak_5100	chr15	50254016	50255425	+	0	NA	Intergenic	Intergenic	634329	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_10550	chr5	60276788	60277095	+	0	NA	Intergenic	MER130|Unknown|Unknown	-290939	NR_040683	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA
chipseq_peak_12208	chr7	72797323	72797563	+	0	NA	Intergenic	L1M5|LINE|L1	304625	NR_046024	625243	Mm.261798	NR_046024		Gm6567	-	predicted gene 6567	ncRNA
chipseq_peak_3414	chr13	9430767	9431228	+	0	NA	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	154472	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	DIP2 disco-interacting protein 2 homolog C (Drosophila)	protein-coding
chipseq_peak_12811	chr8	45689430	45690204	+	0	NA	intron (NM_001310708, intron 1 of 19)	intron (NM_001310708, intron 1 of 19)	27824	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777	sorbin and SH3 domain containing 2	protein-coding
chipseq_peak_11536	chr6	57796976	57797309	+	0	NA	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	27983	NM_146168	232023	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding
chipseq_peak_9668	chr4	30269884	30271339	+	0	NA	Intergenic	Intergenic	-393985	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
chipseq_peak_1433	chr10	32132861	32133148	+	0	NA	intron (NM_001013411, intron 3 of 6)	intron (NM_001013411, intron 3 of 6)	-523279	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
chipseq_peak_1944	chr10	107352082	107352468	+	0	NA	intron (NM_001039354, intron 2 of 5)	intron (NM_001039354, intron 2 of 5)	79881	NM_001284329	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding
chipseq_peak_8990	chr3	85309090	85309581	+	0	NA	Intergenic	Intergenic	-8184	NR_040542	73283	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA
chipseq_peak_1190	chr1	190297816	190298490	+	0	NA	Intergenic	Intergenic	-127473	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding
chipseq_peak_2166	chr11	18438149	18438811	+	0	NA	Intergenic	Intergenic	342494	NR_131129	327872		NR_131129		Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA
chipseq_peak_5431	chr15	95487706	95488369	+	0	NA	intron (NM_001289653, intron 3 of 20)	intron (NM_001289653, intron 3 of 20)	40215	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding
chipseq_peak_1316	chr10	18522411	18522976	+	0	NA	intron (NM_001163592, intron 5 of 7)	intron (NM_001163592, intron 5 of 7)	23383	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding
chipseq_peak_11705	chr6	98221269	98222697	+	0	NA	Intergenic	Intergenic	120771	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_9411	chr3	155360317	155360774	+	0	NA	Intergenic	Intergenic	267111	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding
chipseq_peak_7613	chr2	43976743	43979754	+	0	NA	intron (NM_001301832, intron 7 of 14)	intron (NM_001301832, intron 7 of 14)	87076	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_7686	chr2	49846836	49847316	+	0	NA	intron (NM_027990, intron 1 of 9)	L1MEc|LINE|L1	59390	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding
chipseq_peak_8897	chr3	77917810	77918312	+	0	NA	Intergenic	Intergenic	1226826	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_970	chr1	159822176	159823173	+	0	NA	intron (NM_022312, intron 2 of 22)	intron (NM_022312, intron 2 of 22)	-221706	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding
chipseq_peak_4643	chr14	108609741	108610800	+	0	NA	Intergenic	Intergenic	303969	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_7921	chr2	78159636	78161173	+	0	NA	intron (NR_108098, intron 2 of 6)	intron (NR_108098, intron 2 of 6)	-77143	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding
chipseq_peak_10316	chr5	16190063	16190581	+	0	NA	intron (NM_009784, intron 4 of 37)	intron (NM_009784, intron 4 of 37)	255631	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_1287	chr10	14207482	14208877	+	0	NA	Intergenic	Intergenic	241800	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chipseq_peak_4544	chr14	93385027	93385587	+	0	NA	intron (NM_001271798, intron 2 of 3)	intron (NM_001271798, intron 2 of 3)	503581	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_9824	chr4	55874305	55874794	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-342074	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding
chipseq_peak_14022	chrX	66605463	66605805	+	0	NA	Intergenic	B1F|SINE|Alu	-43684	NM_001161431	245450	Mm.336081	NM_198863	ENSMUSG00000036790	Slitrk2	A930040J07	SLIT and NTRK-like family, member 2	protein-coding
chipseq_peak_7049	chr18	87687264	87688663	+	0	NA	Intergenic	Intergenic	975898	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding
chipseq_peak_4953	chr15	30270945	30271483	+	0	NA	intron (NM_008729, intron 1 of 22)	intron (NM_008729, intron 1 of 22)	98621	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding
chipseq_peak_12021	chr6	148507659	148508418	+	0	NA	Intergenic	Intergenic	-63686	NM_198967	387314	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chipseq_peak_1880	chr10	101003544	101004037	+	0	NA	Intergenic	Intergenic	411404	NM_001081246	66605	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding
chipseq_peak_1298	chr10	16094071	16094737	+	0	NA	Intergenic	Intergenic	302627	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA
chipseq_peak_626	chr1	95856906	95857504	+	0	NA	Intergenic	B3|SINE|B2	-140687	NR_040479	75381	Mm.417807	NR_040479	ENSMUSG00000100777	4930598F16Rik	-	RIKEN cDNA 4930598F16 gene	ncRNA
chipseq_peak_4153	chr14	13576979	13577350	+	0	NA	intron (NM_001163032, intron 3 of 4)	intron (NM_001163032, intron 3 of 4)	-93712	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding
chipseq_peak_7774	chr2	58925692	58926036	+	0	NA	intron (NM_001001178, intron 10 of 13)	Tigger10|DNA|TcMar-Tigger	92742	NM_001001178	227933	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09	coiled-coil domain containing 148	protein-coding
chipseq_peak_13953	chr9	121398330	121399350	+	0	NA	intron (NM_175114, intron 2 of 15)	intron (NM_175114, intron 2 of 15)	31882	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding
chipseq_peak_9433	chr3	158354887	158355186	+	0	NA	intron (NM_001081358, intron 3 of 27)	intron (NM_001081358, intron 3 of 27)	207185	NM_001291452	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding
chipseq_peak_3644	chr13	55589195	55589505	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-3785	NM_026211	67511	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane emp24 protein transport domain containing 9	protein-coding
chipseq_peak_5723	chr16	47875270	47875791	+	0	NA	Intergenic	Intergenic	-408205	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_4955	chr15	30547796	30548642	+	0	NA	intron (NM_008729, intron 3 of 22)	intron (NM_008729, intron 3 of 22)	375626	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding
chipseq_peak_7993	chr2	95440647	95441553	+	0	NA	Intergenic	Intergenic	-877069	NM_001289743	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_4086	chr13	113864876	113866342	+	0	NA	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	71101	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding
chipseq_peak_243	chr1	39446175	39447127	+	0	NA	intron (NM_018775, intron 1 of 19)	intron (NM_018775, intron 1 of 19)	32096	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding
chipseq_peak_2280	chr11	39161339	39162173	+	0	NA	Intergenic	Intergenic	228469	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_5530	chr16	22430186	22430627	+	0	NA	intron (NM_023794, intron 5 of 12)	intron (NM_023794, intron 5 of 12)	9164	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding
chipseq_peak_1018	chr1	167608111	167608936	+	0	NA	intron (NM_009107, intron 1 of 9)	intron (NM_009107, intron 1 of 9)	-9742	NM_001159731	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding
chipseq_peak_11539	chr6	58899092	58899524	+	0	NA	intron (NM_028705, intron 22 of 24)	intron (NM_028705, intron 22 of 24)	7818	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding
chipseq_peak_4417	chr14	75911603	75912678	+	0	NA	intron (NM_026816, intron 6 of 7)	intron (NM_026816, intron 6 of 7)	-42863	NM_026214	67516	Mm.390712	NM_026214	ENSMUSG00000046523	Kctd4	2210017A09Rik|AU017169	potassium channel tetramerisation domain containing 4	protein-coding
chipseq_peak_2561	chr11	107361547	107362293	+	0	NA	intron (NM_145823, intron 1 of 9)	intron (NM_145823, intron 1 of 9)	108800	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding
chipseq_peak_5327	chr15	77933542	77934094	+	0	NA	Intergenic	Intergenic	-4824	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding
chipseq_peak_6236	chr17	32119320	32119600	+	0	NA	Intergenic	Intergenic	-28037	NR_027316	435518	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	ENSMUSG00000002791|Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo
chipseq_peak_11906	chr6	125858146	125858662	+	0	NA	intron (NM_153589, intron 10 of 25)	L1MEf|LINE|L1	167985	NM_153589	243634	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding
chipseq_peak_4487	chr14	85507389	85508257	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-738147	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
chipseq_peak_2336	chr11	46620009	46621120	+	0	NA	intron (NM_001163358, intron 2 of 5)	intron (NM_001163358, intron 2 of 5)	8710	NM_001163358	347708	Mm.18119	NM_178247		Dppa1	C77727	developmental pluripotency associated 1	protein-coding
chipseq_peak_12382	chr7	95401271	95401917	+	0	NA	Intergenic	Intergenic	-769650	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
chipseq_peak_595	chr1	88816396	88817018	+	0	NA	Intergenic	L1MD|LINE|L1	61817	NR_040493	78650	Mm.243767	NR_040493	ENSMUSG00000097398	Platr5	2410088K16Rik	pluripotency associated transcript 5	ncRNA
chipseq_peak_4874	chr15	20302022	20302809	+	0	NA	Intergenic	HAL1ME|LINE|L1	364335	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_7949	chr2	80624450	80624841	+	0	NA	intron (NM_024438, intron 3 of 3)	intron (NM_024438, intron 3 of 3)	4145	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA
chipseq_peak_11918	chr6	135627991	135628456	+	0	NA	Intergenic	Intergenic	-30690	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA
chipseq_peak_866	chr1	141429958	141430759	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-773956	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_8832	chr3	68065735	68067847	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	1989	NM_001113421	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_9389	chr3	151651312	151652178	+	0	NA	Intergenic	Intergenic	98214	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding
chipseq_peak_8485	chr3	18081233	18083462	+	0	NA	intron (NM_007825, intron 4 of 5)	intron (NM_007825, intron 4 of 5)	28022	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding
chipseq_peak_7425	chr2	8061072	8062271	+	0	NA	Intergenic	Intergenic	-665473	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_5241	chr15	66239015	66239726	+	0	NA	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	46854	NM_152923	110862	Mm.255585	NM_152923		Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding
chipseq_peak_7152	chr19	23594775	23595701	+	0	NA	intron (NM_026188, intron 2 of 5)	intron (NM_026188, intron 2 of 5)	57574	NM_026188	67483	Mm.443287	NM_026188	ENSMUSG00000033053	1700028P14Rik	AV209940	RIKEN cDNA 1700028P14 gene	protein-coding
chipseq_peak_12757	chr8	39005926	39007179	+	0	NA	intron (NM_030254, intron 1 of 7)	intron (NM_030254, intron 1 of 7)	685	NM_030254	80286	Mm.272722	NM_030254		Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding
chipseq_peak_2670	chr12	7671888	7672264	+	0	NA	Intergenic	Intergenic	-291746	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_4960	chr15	31453464	31454063	+	0	NA	promoter-TSS (NM_145852)	promoter-TSS (NM_145852)	-74	NM_145852	252967	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding
chipseq_peak_8815	chr3	66082872	66084524	+	0	NA	intron (NM_145820, intron 12 of 13)	intron (NM_145820, intron 12 of 13)	-125473	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding
chipseq_peak_997	chr1	163530515	163530861	+	0	NA	Intergenic	Intergenic	-127019	NR_132627	98376	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding
chipseq_peak_8132	chr2	118262432	118263357	+	0	NA	Intergenic	Intergenic	-5928	NM_027759	71313	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding
chipseq_peak_5553	chr16	25682526	25683085	+	0	NA	promoter-TSS (NM_001127261)	promoter-TSS (NM_001127261)	-960	NM_001127261	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding
chipseq_peak_7540	chr2	34219089	34219391	+	0	NA	intron (NM_001290576, intron 3 of 7)	intron (NM_001290576, intron 3 of 7)	-111505	NR_130173	329387	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA
chipseq_peak_11444	chr6	45413304	45413972	+	0	NA	intron (NM_001004357, intron 1 of 23)	intron (NM_001004357, intron 1 of 23)	353577	NM_001004357	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_1022	chr1	168008142	168008702	+	0	NA	Intergenic	Intergenic	318864	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding
chipseq_peak_8145	chr2	123532782	123533900	+	0	NA	Intergenic	Intergenic	-556628	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
chipseq_peak_8290	chr2	142731431	142732300	+	0	NA	intron (NM_001081133, intron 17 of 25)	intron (NM_001081133, intron 17 of 25)	169599	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_12539	chr7	132209258	132209692	+	0	NA	Intergenic	Intergenic	-54734	NM_018867	55987	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding
chipseq_peak_8427	chr3	4726415	4726914	+	0	NA	Intergenic	Intergenic	-72044	NR_045272	100503859	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA
chipseq_peak_926	chr1	150933454	150935015	+	0	NA	intron (NM_001024720, intron 1 of 106)	intron (NM_001024720, intron 1 of 106)	59201	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|Gm201	hemicentin 1	protein-coding
chipseq_peak_2781	chr12	28432298	28432708	+	0	NA	Intergenic	Intergenic	115834	NM_001177964	68511	Mm.310284	NM_001177964	ENSMUSG00000020633	Dcdc2c	1110015M06Rik	doublecortin domain containing 2C	protein-coding
chipseq_peak_3500	chr13	28810495	28812039	+	0	NA	intron (NR_045053, intron 2 of 8)	intron (NR_045053, intron 2 of 8)	74155	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA
chipseq_peak_10117	chr4	105116642	105117051	+	0	NA	Intergenic	Intergenic	-6948	NM_178143	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding
chipseq_peak_13901	chr9	112726813	112727747	+	0	NA	Intergenic	Intergenic	470706	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_12463	chr7	117074101	117074468	+	0	NA	Intergenic	Intergenic	-306695	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_8015	chr2	98566654	98567466	+	0	NA	Intergenic	Intergenic	1099403	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_11977	chr6	143375936	143376891	+	0	NA	Intergenic	Intergenic	130525	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA
chipseq_peak_6441	chr17	77096611	77097223	+	0	NA	Intergenic	Intergenic	-1103331	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
chipseq_peak_13226	chr8	118442266	118442637	+	0	NA	intron (NM_019707, intron 1 of 13)	intron (NM_019707, intron 1 of 13)	158840	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding
chipseq_peak_13119	chr8	99267206	99267477	+	0	NA	intron (NR_133570, intron 3 of 10)	intron (NR_133570, intron 3 of 10)	149130	NM_001285913	12564	Mm.441131	NM_007667	ENSMUSG00000036510	Cdh8	AI851472|cad8	cadherin 8	protein-coding
chipseq_peak_9622	chr4	24621440	24621876	+	0	NA	intron (NM_001033531, intron 9 of 9)	intron (NM_001033531, intron 9 of 9)	125196	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_9247	chr3	134004556	134004890	+	0	NA	Intergenic	Intergenic	-231772	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding
chipseq_peak_7259	chr19	45431939	45432845	+	0	NA	intron (NM_001037758, intron 2 of 14)	intron (NM_001037758, intron 2 of 14)	68658	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding
chipseq_peak_9483	chr4	7851877	7853626	+	0	NA	Intergenic	Intergenic	292063	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA
chipseq_peak_9017	chr3	90077462	90077799	+	0	NA	intron (NM_001293748, intron 2 of 9)	intron (NM_001293748, intron 2 of 9)	-1891	NM_001253738	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding
chipseq_peak_4920	chr15	25291352	25291730	+	0	NA	Intergenic	Intergenic	122223	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
chipseq_peak_3155	chr12	74122121	74122442	+	0	NA	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	124520	NM_172804	238266	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding
chipseq_peak_3775	chr13	82598337	82601973	+	0	NA	Intergenic	Intergenic	98178	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_13796	chr9	97638605	97639538	+	0	NA	intron (NM_022319, intron 2 of 17)	intron (NM_022319, intron 2 of 17)	-269113	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
chipseq_peak_13132	chr8	100475515	100476456	+	0	NA	Intergenic	Intergenic	1059311	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_8640	chr3	41444032	41444795	+	0	NA	Intergenic	UCON29|DNA|PiggyBac?	48786	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA
chipseq_peak_6390	chr17	68731028	68731400	+	0	NA	intron (NM_177278, intron 18 of 20)	intron (NM_177278, intron 18 of 20)	-105922	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding
chipseq_peak_13127	chr8	100072040	100073096	+	0	NA	Intergenic	Intergenic	655894	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_2159	chr11	17111850	17113043	+	0	NA	Intergenic	Intergenic	-46852	NM_024459	19058	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding
chipseq_peak_32	chr1	10596496	10596949	+	0	NA	intron (NM_177834, intron 1 of 10)	intron (NM_177834, intron 1 of 10)	123223	NM_001289497	329093	Mm.336423	NM_177834	ENSMUSG00000042501	Cpa6	9030616D13Rik	carboxypeptidase A6	protein-coding
chipseq_peak_1238	chr10	7268115	7268833	+	0	NA	Intergenic	Intergenic	-56237	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding
chipseq_peak_14079	chrX	135792354	135792708	+	0	NA	intron (NM_001005385, intron 5 of 9)	intron (NM_001005385, intron 5 of 9)	45815	NR_106104	102465755		NR_106104	ENSMUSG00000106264	Mir7646	mmu-mir-7646	microRNA mir-7646	ncRNA
chipseq_peak_6768	chr18	41305061	41305485	+	0	NA	Intergenic	Intergenic	645921	NM_029942	77619	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding
chipseq_peak_13114	chr8	98628128	98628512	+	0	NA	Intergenic	Intergenic	-383567	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA
chipseq_peak_5186	chr15	60278784	60279351	+	0	NA	Intergenic	Intergenic	-262449	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding
chipseq_peak_2955	chr12	50011382	50011846	+	0	NA	Intergenic	Intergenic	-530752	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_11556	chr6	62162708	62163269	+	0	NA	intron (NM_001164316, intron 10 of 10)	intron (NM_001164316, intron 10 of 10)	-982178	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
chipseq_peak_11874	chr6	115903362	115903696	+	0	NA	intron (NM_001167763, intron 16 of 28)	intron (NM_001167763, intron 16 of 28)	-28398	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding
chipseq_peak_5693	chr16	44303762	44304253	+	0	NA	intron (NM_198034, intron 1 of 24)	L1MB8|LINE|L1	28831	NM_001159419	320007	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding
chipseq_peak_9280	chr3	139297952	139298484	+	0	NA	intron (NM_198659, intron 6 of 13)	(TC)n|Simple_repeat|Simple_repeat	92325	NM_198659	381476	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding
chipseq_peak_7269	chr19	46955603	46956104	+	0	NA	intron (NM_001164363, intron 1 of 17)	RSINE1|SINE|B4	6498	NR_028353	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding
chipseq_peak_4777	chr15	8654798	8655880	+	0	NA	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	55468	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
chipseq_peak_64	chr1	18359911	18360362	+	0	NA	Intergenic	Intergenic	-94998	NM_001040027	654464	Mm.99530	NM_001040027		Gm15386	BD-17|BD-41|Defb17|Defb41|OTTMUSG00000020946|OTTMUSG00000020948|mBD-41	predicted gene 15386	protein-coding
chipseq_peak_7968	chr2	84454118	84454497	+	0	NA	intron (NM_011576, intron 3 of 8)	intron (NM_011576, intron 3 of 8)	19867	NM_011576	21788	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding
chipseq_peak_6957	chr18	68052327	68052951	+	0	NA	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	119382	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding
chipseq_peak_10169	chr4	125830694	125831639	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	91144	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA
chipseq_peak_13344	chr9	22826521	22827038	+	0	NA	intron (NM_181316, intron 20 of 21)	intron (NM_181316, intron 20 of 21)	351064	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding
chipseq_peak_4401	chr14	73540495	73541320	+	0	NA	intron (NM_172527, intron 1 of 4)	L1MA4|LINE|L1	7335	NM_172527	214254	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding
chipseq_peak_11409	chr6	40428722	40429155	+	0	NA	intron (NM_175528, intron 1 of 7)	Tigger9b|DNA|TcMar-Tigger	7195	NM_175528	243780	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding
chipseq_peak_4531	chr14	90872344	90873057	+	0	NA	Intergenic	Intergenic	745809	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
chipseq_peak_7005	chr18	73010186	73010476	+	0	NA	Intergenic	Intergenic	-562374	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 homolog C (C. elegans)	protein-coding
chipseq_peak_825	chr1	137270964	137271362	+	0	NA	Intergenic	Intergenic	-310715	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding
chipseq_peak_9947	chr4	79051523	79053628	+	0	NA	Intergenic	Intergenic	458528	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_4727	chr14	119420149	119420635	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	282127	NM_015820	50787	Mm.445777	NM_015820		Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
chipseq_peak_8384	chr2	169743165	169743689	+	0	NA	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	109781	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
chipseq_peak_4190	chr14	21500406	21501087	+	0	NA	intron (NM_017479, intron 1 of 16)	CpG	961	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chipseq_peak_13099	chr8	96860613	96861458	+	0	NA	Intergenic	Intergenic	-315062	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_4027	chr13	109053235	109053745	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-271254	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_2703	chr12	12958403	12958919	+	0	NA	Intergenic	RSINE1|SINE|B4	-16825	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	protein-coding
chipseq_peak_10964	chr5	121904705	121905321	+	0	NA	intron (NM_001312908, intron 4 of 22)	intron (NM_001312908, intron 4 of 22)	55985	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding
chipseq_peak_641	chr1	97943429	97944184	+	0	NA	intron (NM_013626, intron 4 of 25)	intron (NM_013626, intron 4 of 25)	103987	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA
chipseq_peak_1862	chr10	99553089	99554049	+	0	NA	Intergenic	Intergenic	-55602	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA
chipseq_peak_13825	chr9	103557714	103558655	+	0	NA	non-coding (NR_040764, exon 1 of 3)	non-coding (NR_040764, exon 1 of 3)	1094	NR_040764	319215	Mm.425597	NR_040764	ENSMUSG00000099616	4932413F04Rik	-	RIKEN cDNA 4932413F04 gene	ncRNA
chipseq_peak_8841	chr3	68283225	68284000	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	-184571	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_13697	chr9	77483544	77483813	+	0	NA	intron (NM_172528, intron 2 of 13)	intron (NM_172528, intron 2 of 13)	60381	NM_172528	214345	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding
chipseq_peak_3221	chr12	81852706	81853468	+	0	NA	Intergenic	Intergenic	-6943	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnxl1	pecanex homolog (Drosophila)	protein-coding
chipseq_peak_560	chr1	80494263	80494723	+	0	NA	Intergenic	Intergenic	48561	NR_040460	72208	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	Jr3	RIKEN cDNA 1700016L21 gene	ncRNA
chipseq_peak_6050	chr16	78486529	78486911	+	0	NA	Intergenic	Intergenic	-73596	NR_040569	75818	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA
chipseq_peak_6341	chr17	62202575	62203052	+	0	NA	Intergenic	PB1D11|SINE|Alu	678504	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_1814	chr10	95172298	95172874	+	0	NA	Intergenic	Intergenic	-26761	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA
chipseq_peak_6389	chr17	68724641	68724893	+	0	NA	intron (NM_177278, intron 18 of 20)	L1_Mur3|LINE|L1	-112369	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding
chipseq_peak_631	chr1	96460741	96463911	+	0	NA	Intergenic	Intergenic	200247	NR_040478	75159	Mm.243854	NR_040478	ENSMUSG00000100589	4930533P14Rik	-	RIKEN cDNA 4930533P14 gene	ncRNA
chipseq_peak_2283	chr11	39431216	39431544	+	0	NA	Intergenic	Intergenic	-41155	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_5334	chr15	80479369	80480376	+	0	NA	intron (NM_001163189, intron 4 of 5)	intron (NM_001163189, intron 4 of 5)	80598	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding
chipseq_peak_3921	chr13	97239508	97240369	+	0	NA	Intergenic	MIR3|SINE|MIR	-1167	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding
chipseq_peak_7941	chr2	79512080	79512419	+	0	NA	Intergenic	Intergenic	-55613	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding
chipseq_peak_7125	chr19	20644911	20645287	+	0	NA	Intergenic	Intergenic	43117	NM_013467	11668	Mm.250866	NM_013467	ENSMUSG00000053279	Aldh1a1	Ahd-2|Ahd2|Aldh1|Aldh1a2|E1|Raldh1	aldehyde dehydrogenase family 1, subfamily A1	protein-coding
chipseq_peak_10625	chr5	68149822	68150355	+	0	NA	intron (NM_001018019, intron 2 of 3)	intron (NM_001018019, intron 2 of 3)	118253	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding
chipseq_peak_8904	chr3	78645873	78646703	+	0	NA	Intergenic	Intergenic	498599	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_2446	chr11	80596630	80597623	+	0	NA	intron (NM_177390, intron 17 of 21)	G-rich|Low_complexity|Low_complexity	-88020	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA
chipseq_peak_4023	chr13	108501309	108501888	+	0	NA	Intergenic	Intergenic	-152579	NM_011056	238871	Mm.434429	NM_011056		Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding
chipseq_peak_2129	chr11	10153045	10154364	+	0	NA	Intergenic	Intergenic	-960312	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding
chipseq_peak_5307	chr15	71542235	71542595	+	0	NA	intron (NM_177819, intron 3 of 19)	intron (NM_177819, intron 3 of 19)	185423	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
chipseq_peak_3600	chr13	46217601	46218940	+	0	NA	Intergenic	Intergenic	-55451	NM_001005422	380842	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding
chipseq_peak_11773	chr6	103697118	103697631	+	0	NA	intron (NM_007697, intron 14 of 26)	intron (NM_007697, intron 14 of 26)	186498	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_12490	chr7	121410831	121411906	+	0	NA	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	19072	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chipseq_peak_7347	chr2	3816106	3816689	+	0	NA	Intergenic	Intergenic	102939	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding
chipseq_peak_7595	chr2	43646209	43647722	+	0	NA	intron (NM_027552, intron 10 of 13)	intron (NM_027552, intron 10 of 13)	91640	NM_001289594	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding
chipseq_peak_6018	chr16	76621673	76621905	+	0	NA	Intergenic	Intergenic	-248740	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding
chipseq_peak_3901	chr13	93721773	93722590	+	0	NA	intron (NM_028772, intron 14 of 15)	intron (NM_028772, intron 14 of 15)	-3006	NR_045086	105364	Mm.443795	NR_045086	ENSMUSG00000087334	AW495222	-	expressed sequence AW495222	ncRNA
chipseq_peak_7093	chr19	15658501	15658982	+	0	NA	Intergenic	Intergenic	265881	NM_001205339	107272	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding
chipseq_peak_43	chr1	13573987	13574300	+	0	NA	intron (NM_028173, intron 6 of 10)	intron (NM_028173, intron 6 of 10)	15767	NM_028173	72265	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding
chipseq_peak_9430	chr3	158238779	158239141	+	0	NA	intron (NM_001081358, intron 9 of 27)	intron (NM_001081358, intron 9 of 27)	202278	NM_001289524	67144	Mm.358704	NM_024194		Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding
chipseq_peak_7792	chr2	61551619	61552023	+	0	NA	Intergenic	Intergenic	-26765	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding
chipseq_peak_9177	chr3	121956847	121958347	+	0	NA	intron (NM_172525, intron 1 of 22)	L1ME1|LINE|L1	4271	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding
chipseq_peak_7771	chr2	58615551	58616201	+	0	NA	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	48542	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
chipseq_peak_1294	chr10	15317058	15317516	+	0	NA	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-474490	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA
chipseq_peak_3207	chr12	79347787	79348072	+	0	NA	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	50578	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 homolog B	protein-coding
chipseq_peak_4167	chr14	17621427	17622074	+	0	NA	Intergenic	L1M4a2|LINE|L1	-39210	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding
chipseq_peak_7776	chr2	59054111	59054709	+	0	NA	Intergenic	Intergenic	-35804	NM_001001178	227933	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09	coiled-coil domain containing 148	protein-coding
chipseq_peak_9829	chr4	56718538	56719193	+	0	NA	Intergenic	Intergenic	22560	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding
chipseq_peak_6980	chr18	69600506	69603485	+	0	NA	intron (NM_001083967, intron 8 of 19)	intron (NM_001083967, intron 8 of 19)	256274	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
chipseq_peak_1177	chr1	188667607	188668000	+	0	NA	intron (NM_021408, intron 36 of 70)	intron (NM_021408, intron 36 of 70)	340037	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
chipseq_peak_3028	chr12	58682029	58682870	+	0	NA	Intergenic	Intergenic	329568	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding
chipseq_peak_10704	chr5	79867668	79868043	+	0	NA	Intergenic	Lx9|LINE|L1	-351951	NR_035474	100316701		NR_035474	ENSMUSG00000089570	Mir669m-1	mmu-mir-669m-1	microRNA 669m-1	ncRNA
chipseq_peak_9011	chr3	88178248	88178721	+	0	NA	promoter-TSS (NR_045997)	promoter-TSS (NR_045997)	-699	NR_045997	76642	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA
chipseq_peak_11852	chr6	111606146	111606595	+	0	NA	Intergenic	Intergenic	-604338	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA
chipseq_peak_1430	chr10	31738308	31738994	+	0	NA	intron (NM_001013411, intron 5 of 6)	intron (NM_001013411, intron 5 of 6)	-128926	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
chipseq_peak_8180	chr2	132176370	132176606	+	0	NA	Intergenic	Intergenic	-31380	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding
chipseq_peak_7527	chr2	29465119	29465672	+	0	NA	intron (NM_029615, intron 3 of 4)	intron (NM_029615, intron 3 of 4)	9899	NR_105753	102465170		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA
chipseq_peak_12333	chr7	91453307	91453624	+	0	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	362679	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_13917	chr9	113247950	113249343	+	0	NA	Intergenic	Intergenic	338506	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_11419	chr6	41734842	41735914	+	0	NA	Intergenic	Intergenic	-31053	NM_032540	23925	Mm.19958	NM_032540	ENSMUSG00000029866	Kel	CD238|Ece3	Kell blood group	protein-coding
chipseq_peak_4852	chr15	18818002	18818864	+	0	NA	promoter-TSS (NM_001316758)	promoter-TSS (NM_001316758)	-514	NM_001316758	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_3738	chr13	79035387	79035671	+	0	NA	Intergenic	Intergenic	-836547	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding
chipseq_peak_3848	chr13	88554222	88555014	+	0	NA	Intergenic	Intergenic	-266854	NM_010103	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding
chipseq_peak_5976	chr16	74408375	74410377	+	0	NA	intron (NM_175549, intron 1 of 27)	intron (NM_175549, intron 1 of 27)	1536	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_128	chr1	25179584	25181206	+	0	NA	intron (NM_175642, intron 19 of 30)	intron (NM_175642, intron 19 of 30)	97559	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
chipseq_peak_14003	chrX	56578274	56578679	+	0	NA	Intergenic	L1MC3|LINE|L1	9438	NR_039576	100628628		NR_039576	ENSMUSG00000092787	Mir5116	mmu-mir-5116|mu-mir-5116	microRNA 5116	ncRNA
chipseq_peak_5392	chr15	92577401	92580285	+	0	NA	intron (NM_001164593, intron 3 of 9)	intron (NM_001164593, intron 3 of 9)	-18266	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
chipseq_peak_3157	chr12	74162912	74163968	+	0	NA	intron (NM_172804, intron 2 of 6)	intron (NM_172804, intron 2 of 6)	-120836	NR_030735	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA
chipseq_peak_12117	chr7	54334853	54335275	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-443175	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
chipseq_peak_2580	chr11	110457378	110459262	+	0	NA	intron (NM_011943, intron 1 of 11)	ID4_|SINE|ID	59198	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
chipseq_peak_6054	chr16	79161555	79162376	+	0	NA	Intergenic	Intergenic	-70868	NM_178855	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
chipseq_peak_11114	chr5	149168849	149169185	+	0	NA	intron (NR_015478, intron 1 of 2)	intron (NR_015478, intron 1 of 2)	-12825	NR_028061	667410	Mm.441522	NR_028061		Gm8615	EG667410	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo
chipseq_peak_9527	chr4	13777945	13779043	+	0	NA	intron (NM_001111027, intron 2 of 11)	intron (NM_001111027, intron 2 of 11)	-6288	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_6996	chr18	71362540	71362927	+	0	NA	intron (NM_007831, intron 21 of 28)	intron (NM_007831, intron 21 of 28)	794441	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding
chipseq_peak_9216	chr3	126764841	126765125	+	0	NA	intron (NM_001293665, intron 4 of 19)	intron (NM_001293665, intron 4 of 19)	168032	NM_001293666	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
chipseq_peak_7766	chr2	58385130	58386084	+	0	NA	Intergenic	Intergenic	-27849	NM_001111030	269275	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding
chipseq_peak_5309	chr15	71745501	71746147	+	0	NA	Intergenic	Intergenic	-17986	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
chipseq_peak_7526	chr2	29451188	29451717	+	0	NA	intron (NM_029615, intron 3 of 4)	intron (NM_029615, intron 3 of 4)	23842	NR_105753	102465170		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA
chipseq_peak_12451	chr7	113737767	113738217	+	0	NA	Intergenic	Intergenic	-28006	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding
chipseq_peak_13384	chr9	27665524	27665875	+	0	NA	Intergenic	Intergenic	-125570	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_7275	chr19	47939338	47939787	+	0	NA	intron (NM_001163267, intron 1 of 17)	intron (NM_001163267, intron 1 of 17)	1850	NM_001163267	381229	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding
chipseq_peak_1915	chr10	105738906	105739378	+	0	NA	Intergenic	Intergenic	102238	NM_207522	216292	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding
chipseq_peak_12968	chr8	66759745	66760118	+	0	NA	Intergenic	Intergenic	62509	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding
chipseq_peak_6800	chr18	46353922	46354273	+	0	NA	Intergenic	Intergenic	-42169	NM_001160399	240261	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding
chipseq_peak_6016	chr16	76592137	76592600	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-219319	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding
chipseq_peak_6592	chr18	14036983	14037478	+	0	NA	Intergenic	Intergenic	-64497	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
chipseq_peak_1428	chr10	31501678	31502143	+	0	NA	TTS (NM_001146349)	TTS (NM_001146349)	-55989	NM_009413	21987	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding
chipseq_peak_12605	chr8	8047242	8047996	+	0	NA	Intergenic	Charlie21a|DNA|hAT-Charlie	613154	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_5659	chr16	41882499	41883776	+	0	NA	intron (NM_175548, intron 1 of 5)	L1MA4A|LINE|L1	349795	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_13243	chr8	124158223	124158506	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-73030	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
chipseq_peak_7959	chr2	83053156	83053713	+	0	NA	Intergenic	MER92-int|LTR|ERV1	-591144	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
chipseq_peak_7705	chr2	52730402	52731300	+	0	NA	intron (NM_019667, intron 1 of 13)	B3A|SINE|B2	11298	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding
chipseq_peak_6003	chr16	75415194	75416165	+	0	NA	Intergenic	Intergenic	170382	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_11673	chr6	95544093	95544544	+	0	NA	intron (NM_011507, intron 9 of 10)	intron (NM_011507, intron 9 of 10)	174528	NM_011507	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding
chipseq_peak_6156	chr17	4220470	4221061	+	0	NA	Intergenic	Intergenic	-98663	NR_045462	78043	Mm.398313	NR_045462		4930548J01Rik	1700113K09Rik	RIKEN cDNA 4930548J01 gene	ncRNA
chipseq_peak_13402	chr9	28662526	28663559	+	0	NA	intron (NM_177906, intron 2 of 7)	intron (NM_177906, intron 2 of 7)	871773	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_1985	chr10	110927473	110927834	+	0	NA	intron (NM_007792, intron 1 of 5)	intron (NM_007792, intron 1 of 5)	7477	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding
chipseq_peak_7848	chr2	66141832	66142134	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-17190	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
chipseq_peak_1792	chr10	91873974	91874485	+	0	NA	Intergenic	Intergenic	197956	NR_029812	723955		NR_029812	ENSMUSG00000065524	Mir135a-2	Mirn135a-2|mir-135a-2	microRNA 135a-2	ncRNA
chipseq_peak_7736	chr2	56232873	56233616	+	0	NA	Intergenic	MER130|Unknown|Unknown	-552567	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
chipseq_peak_9939	chr4	78274560	78275304	+	0	NA	Intergenic	Intergenic	-63037	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_8191	chr2	134643552	134645323	+	0	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-316	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
chipseq_peak_2678	chr12	9938731	9939145	+	0	NA	Intergenic	Intergenic	364496	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding
chipseq_peak_11317	chr6	28692591	28693117	+	0	NA	intron (NM_019776, intron 12 of 23)	intron (NM_019776, intron 12 of 23)	138893	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding
chipseq_peak_4501	chr14	87314867	87315234	+	0	NA	Intergenic	Intergenic	-101533	NM_172605	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding
chipseq_peak_6144	chr17	3350402	3351236	+	0	NA	intron (NM_001122998, intron 1 of 26)	AT_rich|Low_complexity|Low_complexity	24246	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
chipseq_peak_6530	chr17	90817970	90818324	+	0	NA	intron (NM_020252, intron 4 of 22)	intron (NM_020252, intron 4 of 22)	-43022	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_2934	chr12	49374734	49376268	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7382	NM_001160112	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding
chipseq_peak_5956	chr16	73317165	73318230	+	0	NA	Intergenic	MER53|DNA|hAT	654548	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_13048	chr8	86158991	86159893	+	0	NA	Intergenic	Intergenic	318440	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding
chipseq_peak_4912	chr15	24154047	24154802	+	0	NA	Intergenic	Intergenic	1117961	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_9870	chr4	70463529	70465050	+	0	NA	intron (NM_172694, intron 2 of 5)	intron (NM_172694, intron 2 of 5)	-53854	NM_145990	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding
chipseq_peak_548	chr1	78488851	78489203	+	0	NA	promoter-TSS (NM_001278075)	promoter-TSS (NM_001278075)	-130	NR_102758	23874	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding
chipseq_peak_8875	chr3	73730082	73730574	+	0	NA	Intergenic	Intergenic	-21913	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding
chipseq_peak_8988	chr3	85147955	85148733	+	0	NA	Intergenic	Intergenic	-169175	NR_040542	73283	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA
chipseq_peak_2517	chr11	94978217	94979405	+	0	NA	Intergenic	(TGAA)n|Simple_repeat|Simple_repeat	-2484	NM_009161	20391	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding
chipseq_peak_12160	chr7	58768297	58768614	+	0	NA	intron (NM_009728, intron 2 of 20)	intron (NM_009728, intron 2 of 20)	110253	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding
chipseq_peak_10981	chr5	124364122	124364645	+	0	NA	Intergenic	Intergenic	-9755	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding
chipseq_peak_4832	chr15	15823108	15823467	+	0	NA	Intergenic	Intergenic	-954814	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_5822	chr16	62423788	62424301	+	0	NA	Intergenic	Intergenic	362672	NM_178925	106338	Mm.26321	NM_178925		Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding
chipseq_peak_9191	chr3	123400124	123400785	+	0	NA	Intergenic	L1MD|LINE|L1	-14464	NM_201638	210529	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding
chipseq_peak_3687	chr13	69939474	69940402	+	0	NA	Intergenic	Intergenic	-82021	NR_131156	100042291	Mm.412604	NR_131156		Gm3772	-	predicted gene 3772	ncRNA
chipseq_peak_14070	chrX	128585730	128586127	+	0	NA	Intergenic	Intergenic	-465596	NR_045441	75274	Mm.108718	NR_045441	ENSMUSG00000086244	4930558G05Rik	-	RIKEN cDNA 4930558G05 gene	ncRNA
chipseq_peak_2874	chr12	39073469	39074190	+	0	NA	Intergenic	Intergenic	290118	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
chipseq_peak_433	chr1	61695889	61696333	+	0	NA	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	57287	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
chipseq_peak_7829	chr2	65141559	65142012	+	0	NA	intron (NM_177025, intron 2 of 13)	intron (NM_177025, intron 2 of 13)	96841	NM_027225	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding
chipseq_peak_4427	chr14	76628023	76629274	+	0	NA	Intergenic	Intergenic	-48920	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA
chipseq_peak_4229	chr14	29964609	29965212	+	0	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3470	NM_019979	80795	Mm.104491	NM_019979	ENSMUSG00000042682	Selk	1110001C03Rik|AA673253|HSPC030|Hsp30	selenoprotein K	protein-coding
chipseq_peak_2105	chr10	127121295	127121843	+	0	NA	promoter-TSS (NM_177614)	promoter-TSS (NM_177614)	-409	NM_001171026	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding
chipseq_peak_2707	chr12	13307871	13308242	+	0	NA	intron (NM_027706, intron 11 of 51)	intron (NM_027706, intron 11 of 51)	38929	NM_027706	71169	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding
chipseq_peak_11342	chr6	33189612	33190011	+	0	NA	Intergenic	Intergenic	-59339	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
chipseq_peak_11603	chr6	76984657	76985141	+	0	NA	intron (NM_145732, intron 10 of 18)	intron (NM_145732, intron 10 of 18)	-257818	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_7419	chr2	8021555	8023408	+	0	NA	Intergenic	Intergenic	-626283	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_506	chr1	71784921	71785266	+	0	NA	Intergenic	Intergenic	-103019	NR_027659	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA
chipseq_peak_13757	chr9	92206598	92208312	+	0	NA	intron (NM_001195693, intron 5 of 6)	intron (NM_001195693, intron 5 of 6)	14519	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding
chipseq_peak_1775	chr10	90575784	90579540	+	0	NA	intron (NM_181398, intron 1 of 9)	intron (NM_181398, intron 1 of 9)	971	NM_001177398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_13333	chr9	17048804	17049174	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-670758	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT tumor suppressor homolog 3 (Drosophila)	protein-coding
chipseq_peak_6801	chr18	46867577	46868013	+	0	NA	intron (NM_029008, intron 3 of 19)	Tigger12c|DNA|TcMar-Tigger	17756	NM_029008	74574	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding
chipseq_peak_3034	chr12	59382721	59383256	+	0	NA	Intergenic	Intergenic	-163505	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_14146	chrX	167828421	167829066	+	0	NA	intron (NM_001033330, intron 4 of 19)	intron (NM_001033330, intron 4 of 19)	26334	NM_001290428	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding
chipseq_peak_3865	chr13	90364464	90364995	+	0	NA	Intergenic	Intergenic	275062	NM_025335	66074	Mm.241387	NM_025335		Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding
chipseq_peak_863	chr1	141111974	141113501	+	0	NA	Intergenic	Intergenic	-456335	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_848	chr1	139267907	139268248	+	0	NA	intron (NM_133239, intron 5 of 11)	intron (NM_133239, intron 5 of 11)	108999	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding
chipseq_peak_61	chr1	18179890	18181909	+	0	NA	Intergenic	Intergenic	42665	NR_002879	654454	Mm.383637	NR_002879	ENSMUSG00000070977	Defb44-ps	Defb44|Defb49|Defb49-ps|EG574082	defensin beta 44, pseudogene	pseudo
chipseq_peak_9642	chr4	26753202	26754267	+	0	NA	Intergenic	Intergenic	-48285	NR_040656	75360	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA
chipseq_peak_6615	chr18	19551453	19552524	+	0	NA	Intergenic	Intergenic	450109	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_8208	chr2	135683725	135684074	+	0	NA	Intergenic	Intergenic	-57931	NM_013829	18798	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding
chipseq_peak_1726	chr10	77290661	77291228	+	0	NA	non-coding (NR_021486, exon 11 of 11)	non-coding (NR_021486, exon 11 of 11)	31644	NM_030262	80294	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
chipseq_peak_6610	chr18	18904886	18905880	+	0	NA	Intergenic	Intergenic	1096714	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_13550	chr9	51441578	51442589	+	0	NA	Intergenic	Intergenic	-113166	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding
chipseq_peak_11781	chr6	104040543	104040794	+	0	NA	Intergenic	Intergenic	-452376	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_4735	chr14	119698207	119698757	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	-50745	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA
chipseq_peak_9343	chr3	147541446	147542740	+	0	NA	Intergenic	L1Md_T|LINE|L1	689726	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding
chipseq_peak_9893	chr4	72996120	72996789	+	0	NA	Intergenic	Intergenic	-143820	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding
chipseq_peak_432	chr1	61273878	61274507	+	0	NA	Intergenic	Intergenic	-104240	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA
chipseq_peak_9204	chr3	124357389	124357907	+	0	NA	Intergenic	Intergenic	36611	NM_146140	229801	Mm.165810	NM_146140		Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding
chipseq_peak_8901	chr3	78171116	78172443	+	0	NA	Intergenic	Intergenic	973108	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_3328	chr12	102511392	102511798	+	0	NA	Intergenic	Intergenic	41685	NM_013747	27277	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding
chipseq_peak_9148	chr3	118459414	118459937	+	0	NA	Intergenic	Intergenic	25818	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA
chipseq_peak_9842	chr4	62612521	62613525	+	0	NA	intron (NM_019492, intron 7 of 19)	intron (NM_019492, intron 7 of 19)	-6649	NM_001081650	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding
chipseq_peak_1942	chr10	107267635	107268229	+	0	NA	Intergenic	Intergenic	-3899	NM_001033223	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding
chipseq_peak_2946	chr12	49831968	49833493	+	0	NA	Intergenic	Intergenic	-351868	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_13823	chr9	103543192	103543454	+	0	NA	intron (NM_178638, intron 3 of 5)	MIR|SINE|MIR	-13767	NR_040764	319215	Mm.425597	NR_040764	ENSMUSG00000099616	4932413F04Rik	-	RIKEN cDNA 4932413F04 gene	ncRNA
chipseq_peak_7877	chr2	70441908	70444631	+	0	NA	Intergenic	Intergenic	-31654	NM_022435	64406	Mm.423397	NM_022435	ENSMUSG00000075304	Sp5	-	trans-acting transcription factor 5	protein-coding
chipseq_peak_1946	chr10	107875855	107876192	+	0	NA	intron (NM_001177567, intron 16 of 57)	intron (NM_001177567, intron 16 of 57)	36111	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding
chipseq_peak_4067	chr13	111146309	111146717	+	0	NA	Intergenic	MER53|DNA|hAT	82918	NR_045908	73129	Mm.417826	NR_045908		3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA
chipseq_peak_5470	chr16	5742934	5743523	+	0	NA	Intergenic	Intergenic	-141565	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_7279	chr19	48834116	48834780	+	0	NA	Intergenic	Intergenic	628423	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding
chipseq_peak_5930	chr16	72349780	72350410	+	0	NA	Intergenic	Intergenic	-115768	NR_131115	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA
chipseq_peak_12924	chr8	59501337	59502064	+	0	NA	Intergenic	Intergenic	-323949	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
chipseq_peak_10792	chr5	89942039	89942877	+	0	NA	Intergenic	Intergenic	-59124	NM_177872	330119	Mm.133062	NM_177872		Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding
chipseq_peak_5798	chr16	56602303	56602743	+	0	NA	intron (NM_001014424, intron 14 of 36)	intron (NM_001014424, intron 14 of 36)	114927	NM_019678	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding
chipseq_peak_341	chr1	53063713	53063996	+	0	NA	intron (NM_010834, intron 1 of 2)	intron (NM_010834, intron 1 of 2)	2214	NM_010834	17700	Mm.3514	NM_010834	ENSMUSG00000026100	Mstn	Cmpt|Gdf8	myostatin	protein-coding
chipseq_peak_291	chr1	43535617	43536276	+	0	NA	intron (NM_010879, intron 3 of 4)	L3|LINE|CR1	90195	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding
chipseq_peak_6448	chr17	78357874	78358912	+	0	NA	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	59759	NM_001285946	225020	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding
chipseq_peak_11685	chr6	97205813	97206143	+	0	NA	promoter-TSS (NM_001301859)	promoter-TSS (NM_001301859)	-331	NM_001301859	22200	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding
chipseq_peak_2770	chr12	27342630	27343686	+	0	NA	promoter-TSS (NM_009234)	promoter-TSS (NM_009234)	-440	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding
chipseq_peak_9851	chr4	65773361	65773661	+	0	NA	intron (NM_207109, intron 11 of 22)	intron (NM_207109, intron 11 of 22)	168525	NM_001161782	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding
chipseq_peak_6758	chr18	39903419	39904215	+	0	NA	Intergenic	Intergenic	130320	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding
chipseq_peak_13089	chr8	95037273	95037611	+	0	NA	intron (NM_173036, intron 8 of 11)	intron (NM_173036, intron 8 of 11)	-17661	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding
chipseq_peak_12420	chr7	101896575	101896924	+	0	NA	intron (NM_001291349, intron 1 of 4)	intron (NM_001291349, intron 1 of 4)	418	NM_001291349	75430	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding
chipseq_peak_3706	chr13	75754156	75755864	+	0	NA	intron (NM_138953, intron 4 of 11)	intron (NM_138953, intron 4 of 11)	47526	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding
chipseq_peak_10242	chr5	4530266	4530550	+	0	NA	Intergenic	Intergenic	227808	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled homolog 1 (Drosophila)	protein-coding
chipseq_peak_12480	chr7	118766211	118766486	+	0	NA	intron (NM_027815, intron 8 of 30)	intron (NM_027815, intron 8 of 30)	26077	NM_027815	71517	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding
chipseq_peak_12116	chr7	54150972	54151349	+	0	NA	Intergenic	Intergenic	-259271	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
chipseq_peak_2680	chr12	9978818	9979543	+	0	NA	Intergenic	Intergenic	-390791	NM_001310582	70881	Mm.272843	NM_027588	ENSMUSG00000020622	Nt5c1b	4921514H13Rik|AIRP|CN-IB|cN1B	5'-nucleotidase, cytosolic IB	protein-coding
chipseq_peak_1264	chr10	10483396	10483784	+	0	NA	Intergenic	Intergenic	-11276	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding
chipseq_peak_10213	chr4	142953747	142954154	+	0	NA	Intergenic	Intergenic	182212	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA
chipseq_peak_8605	chr3	37805061	37805347	+	0	NA	Intergenic	Intergenic	-80844	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding
chipseq_peak_8211	chr2	136416338	136416800	+	0	NA	Intergenic	Intergenic	-28602	NM_172858	241656	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|6430627N20|Pak5	p21 protein (Cdc42/Rac)-activated kinase 7	protein-coding
chipseq_peak_2570	chr11	108725573	108726071	+	0	NA	intron (NM_029586, intron 1 of 4)	intron (NM_029586, intron 1 of 4)	43204	NM_029586	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding
chipseq_peak_2892	chr12	41485816	41487689	+	0	NA	promoter-TSS (NM_001271709)	promoter-TSS (NM_001271709)	-695	NM_001271709	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_2557	chr11	105828189	105828736	+	0	NA	intron (NM_181071, intron 8 of 25)	intron (NM_181071, intron 8 of 25)	115685	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding
chipseq_peak_13667	chr9	69987419	69987965	+	0	NA	Intergenic	Intergenic	-1774	NM_016787	12175	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding
chipseq_peak_9585	chr4	20518239	20519121	+	0	NA	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	259988	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding
chipseq_peak_12318	chr7	91044896	91046225	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-45226	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_6280	chr17	49866737	49868328	+	0	NA	intron (NM_177052, intron 15 of 22)	intron (NM_177052, intron 15 of 22)	252360	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding
chipseq_peak_6140	chr17	3253701	3254089	+	0	NA	Intergenic	Intergenic	-72678	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
chipseq_peak_12731	chr8	34709905	34711008	+	0	NA	Intergenic	Intergenic	-70140	NR_040706	330734	Mm.149998	NR_040706		B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA
chipseq_peak_13284	chr9	5760283	5761687	+	0	NA	Intergenic	Intergenic	-407627	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding
chipseq_peak_10421	chr5	40270475	40271316	+	0	NA	Intergenic	Intergenic	-626264	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_2704	chr12	13000679	13001131	+	0	NA	Intergenic	L1M5|LINE|L1	-59069	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	protein-coding
chipseq_peak_12606	chr8	8233450	8233999	+	0	NA	Intergenic	Intergenic	427049	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_5160	chr15	57464024	57464572	+	0	NA	intron (NM_172378, intron 2 of 11)	intron (NM_172378, intron 2 of 11)	13327	NM_172378	210463	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding
chipseq_peak_7325	chr19	57592322	57592805	+	0	NA	Intergenic	Intergenic	-18471	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding
chipseq_peak_4105	chr13	116882945	116883599	+	0	NA	intron (NM_001081009, intron 15 of 26)	intron (NM_001081009, intron 15 of 26)	142244	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding
chipseq_peak_9552	chr4	16101769	16102193	+	0	NA	Intergenic	Intergenic	61517	NM_138952	192656	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding
chipseq_peak_1509	chr10	43625232	43625593	+	0	NA	intron (NR_033558, intron 2 of 2)	intron (NR_033558, intron 2 of 2)	31985	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA
chipseq_peak_11565	chr6	63762392	63762829	+	0	NA	intron (NM_008167, intron 2 of 15)	intron (NM_008167, intron 2 of 15)	505753	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
chipseq_peak_8943	chr3	80777105	80777523	+	0	NA	intron (NM_001039195, intron 2 of 12)	intron (NM_001039195, intron 2 of 12)	25477	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_13585	chr9	56502172	56502746	+	0	NA	Intergenic	Intergenic	83613	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding
chipseq_peak_8040	chr2	104209439	104210050	+	0	NA	intron (NM_001033347, intron 12 of 20)	intron (NM_001033347, intron 12 of 20)	86975	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding
chipseq_peak_1497	chr10	41932044	41932350	+	0	NA	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	44758	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding
chipseq_peak_3201	chr12	78332196	78332633	+	0	NA	intron (NM_145965, intron 1 of 22)	intron (NM_145965, intron 1 of 22)	105759	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding
chipseq_peak_11138	chr6	5733240	5733510	+	0	NA	intron (NM_010063, intron 1 of 16)	intron (NM_010063, intron 1 of 16)	7736	NM_001191026	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding
chipseq_peak_9394	chr3	152761180	152761468	+	0	NA	intron (NM_025662, intron 9 of 10)	L1MC4|LINE|L1	47224	NM_178016	329777	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding
chipseq_peak_2064	chr10	123582528	123583508	+	0	NA	intron (NM_182807, intron 2 of 5)	intron (NM_182807, intron 2 of 5)	318942	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_9267	chr3	137560752	137561448	+	0	NA	Intergenic	Intergenic	-8478	NM_177665	229862	Mm.246591	NM_177665	ENSMUSG00000055138	Gm4861	9230109N16|EG229862	predicted gene 4861	protein-coding
chipseq_peak_8537	chr3	25806569	25808046	+	0	NA	intron (NM_138666, intron 5 of 7)	intron (NM_138666, intron 5 of 7)	346000	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_12859	chr8	54228632	54229386	+	0	NA	Intergenic	Intergenic	151477	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
chipseq_peak_7395	chr2	7255244	7256418	+	0	NA	intron (NM_001110231, intron 2 of 15)	intron (NM_001110231, intron 2 of 15)	140169	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_7956	chr2	82701308	82702671	+	0	NA	Intergenic	Intergenic	648331	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding
chipseq_peak_682	chr1	105550053	105550734	+	0	NA	intron (NM_013784, intron 28 of 30)	intron (NM_013784, intron 28 of 30)	113283	NM_013784	27392	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding
chipseq_peak_2495	chr11	89342623	89343027	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-40266	NM_008711	18121	Mm.135266	NM_008711	ENSMUSG00000048616	Nog	-	noggin	protein-coding
chipseq_peak_10170	chr4	126067324	126067796	+	0	NA	intron (NM_172701, intron 1 of 9)	intron (NM_172701, intron 1 of 9)	8995	NM_172701	230751	Mm.38907	NM_172701		Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding
chipseq_peak_10069	chr4	97886295	97886564	+	0	NA	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	108803	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
chipseq_peak_1676	chr10	69130556	69130954	+	0	NA	Intergenic	Intergenic	-77797	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding
chipseq_peak_7014	chr18	77215468	77216136	+	0	NA	intron (NM_013666, intron 2 of 7)	intron (NM_013666, intron 2 of 7)	29955	NM_153124	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding
chipseq_peak_1414	chr10	29820503	29821571	+	0	NA	Intergenic	Intergenic	-285170	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding
chipseq_peak_4554	chr14	93870288	93871883	+	0	NA	intron (NM_001081377, intron 1 of 3)	intron (NM_001081377, intron 1 of 3)	17803	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_13993	chrX	50132153	50132594	+	0	NA	Intergenic	Intergenic	-122138	NM_146390	258385	Mm.377470	NM_146390	ENSMUSG00000050504	Olfr1323	MOR216-1	olfactory receptor 1323	protein-coding
chipseq_peak_3154	chr12	74107984	74109307	+	0	NA	intron (NM_172804, intron 1 of 6)	MLT1B|LTR|ERVL-MaLR	110884	NM_172804	238266	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding
chipseq_peak_13712	chr9	81538417	81539212	+	0	NA	Intergenic	Intergenic	-93116	NR_040394	319405	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA
chipseq_peak_11731	chr6	100928774	100929189	+	0	NA	Intergenic	Intergenic	95343	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding
chipseq_peak_933	chr1	152000611	152001264	+	0	NA	intron (NM_197990, intron 2 of 5)	L1MA4|LINE|L1	89383	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding
chipseq_peak_1087	chr1	176971167	176972046	+	0	NA	intron (NM_029756, intron 16 of 17)	intron (NM_029756, intron 16 of 17)	-135473	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_1410	chr10	29581392	29581833	+	0	NA	Intergenic	Intergenic	-45745	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding
chipseq_peak_5248	chr15	66447756	66448182	+	0	NA	intron (NM_019457, intron 6 of 11)	intron (NM_019457, intron 6 of 11)	52941	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding
chipseq_peak_11185	chr6	12809476	12810086	+	0	NA	Intergenic	Intergenic	-60528	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
chipseq_peak_7090	chr19	14681119	14681655	+	0	NA	Intergenic	Intergenic	-83204	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_13104	chr8	97231663	97232037	+	0	NA	Intergenic	Intergenic	-685877	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_3805	chr13	83654441	83657061	+	0	NA	intron (NM_001170537, intron 9 of 10)	intron (NM_001170537, intron 9 of 10)	-72355	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA
chipseq_peak_2117	chr11	5892833	5893229	+	0	NA	Intergenic	MER67C|LTR|ERV1	5751	NM_022879	17898	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding
chipseq_peak_4433	chr14	76887458	76888260	+	0	NA	Intergenic	Intergenic	148758	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding
chipseq_peak_5104	chr15	50584000	50584307	+	0	NA	Intergenic	Intergenic	304896	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_8072	chr2	108307426	108308120	+	0	NA	Intergenic	Intergenic	970517	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding
chipseq_peak_12918	chr8	58930885	58931503	+	0	NA	Intergenic	Intergenic	19439	NM_173411	234290	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding
chipseq_peak_12120	chr7	54440127	54441569	+	0	NA	Intergenic	Intergenic	-394397	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_4099	chr13	115328946	115329867	+	0	NA	Intergenic	Intergenic	-227442	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding
chipseq_peak_2903	chr12	43099183	43099938	+	0	NA	Intergenic	Intergenic	1110508	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
chipseq_peak_13267	chr8	127936739	127937246	+	0	NA	Intergenic	Intergenic	341233	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA
chipseq_peak_12205	chr7	72574322	72574822	+	0	NA	Intergenic	Intergenic	-267977	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding
chipseq_peak_991	chr1	162475621	162476095	+	0	NA	intron (NM_172646, intron 1 of 19)	intron (NM_172646, intron 1 of 19)	2172	NM_001038619	103967	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|mKIAA0820	dynamin 3	protein-coding
chipseq_peak_8247	chr2	140427231	140427701	+	0	NA	intron (NM_001013802, intron 2 of 18)	intron (NM_001013802, intron 2 of 18)	32031	NM_028387	72899	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding
chipseq_peak_6040	chr16	77784042	77784391	+	0	NA	Intergenic	Intergenic	137943	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_1367	chr10	26919635	26920147	+	0	NA	Intergenic	Intergenic	147379	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
chipseq_peak_4504	chr14	87566542	87567480	+	0	NA	Intergenic	Intergenic	150428	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding
chipseq_peak_3584	chr13	45571744	45573148	+	0	NA	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	65002	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding
chipseq_peak_566	chr1	82293965	82294925	+	0	NA	Intergenic	Intergenic	-3006	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding
chipseq_peak_7260	chr19	45446427	45447901	+	0	NA	intron (NM_001037758, intron 2 of 14)	intron (NM_001037758, intron 2 of 14)	83430	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding
chipseq_peak_10394	chr5	35918217	35919004	+	0	NA	intron (NM_027373, intron 1 of 16)	intron (NM_027373, intron 1 of 16)	25291	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding
chipseq_peak_6835	chr18	53861974	53862477	+	0	NA	5' UTR (NM_152809, exon 1 of 13)	5' UTR (NM_152809, exon 1 of 13)	112	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
chipseq_peak_4609	chr14	105328264	105328904	+	0	NA	Intergenic	Intergenic	69911	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding
chipseq_peak_1026	chr1	168549668	168553851	+	0	NA	Intergenic	Intergenic	61116	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA
chipseq_peak_6966	chr18	68742742	68743861	+	0	NA	Intergenic	Intergenic	3901	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA
chipseq_peak_5970	chr16	74164697	74165328	+	0	NA	intron (NM_175549, intron 2 of 27)	intron (NM_175549, intron 2 of 27)	177055	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_5072	chr15	45020876	45022322	+	0	NA	Intergenic	Intergenic	93335	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding
chipseq_peak_632	chr1	96549134	96550685	+	0	NA	Intergenic	Intergenic	112664	NR_040478	75159	Mm.243854	NR_040478	ENSMUSG00000100589	4930533P14Rik	-	RIKEN cDNA 4930533P14 gene	ncRNA
chipseq_peak_10578	chr5	63121080	63121702	+	0	NA	Intergenic	Intergenic	307568	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding
chipseq_peak_8968	chr3	82250811	82251289	+	0	NA	Intergenic	Intergenic	-105173	NM_021896	60596	Mm.143831	NM_021896	ENSMUSG00000033910	Gucy1a3	1200016O07Rik|sGC-alpha1	guanylate cyclase 1, soluble, alpha 3	protein-coding
chipseq_peak_12161	chr7	58843225	58844561	+	0	NA	Intergenic	Intergenic	185691	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding
chipseq_peak_3287	chr12	95239367	95240572	+	0	NA	Intergenic	Intergenic	-452257	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chipseq_peak_1270	chr10	11888965	11889512	+	0	NA	Intergenic	Intergenic	280014	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding
chipseq_peak_3680	chr13	64526929	64527342	+	0	NA	Intergenic	Intergenic	-29343	NM_001195435	68880	Mm.390594	NM_001195435	ENSMUSG00000096537	1190003K10Rik	-	RIKEN cDNA 1190003K10 gene	protein-coding
chipseq_peak_1995	chr10	112138530	112139367	+	0	NA	Intergenic	RLTR46A2|LTR|ERVK	-24673	NM_001310675	353025	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding
chipseq_peak_12892	chr8	55655799	55656519	+	0	NA	Intergenic	Intergenic	250805	NM_175939	244486	Mm.67684	NM_175939	ENSMUSG00000046258	Adam29	-	a disintegrin and metallopeptidase domain 29	protein-coding
chipseq_peak_7348	chr2	3822455	3823643	+	0	NA	Intergenic	Intergenic	109591	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding
chipseq_peak_2805	chr12	31998388	31999680	+	0	NA	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	-48499	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding
chipseq_peak_7377	chr2	6600317	6600625	+	0	NA	intron (NM_001310447, intron 6 of 11)	B2_Mm1t|SINE|B2	121191	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_3436	chr13	16110491	16111838	+	0	NA	Intergenic	Intergenic	96689	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_2682	chr12	10810590	10810950	+	0	NA	Intergenic	B3|SINE|B2	-237043	NR_045860	71457	Mm.95280	NR_045860		7420701I03Rik	-	RIKEN cDNA 7420701I03 gene	ncRNA
chipseq_peak_3694	chr13	70127308	70127712	+	0	NA	Intergenic	Intergenic	-99162	NR_045965	74280	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA
chipseq_peak_6281	chr17	49892423	49893117	+	0	NA	intron (NM_177052, intron 18 of 22)	intron (NM_177052, intron 18 of 22)	277598	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding
chipseq_peak_3375	chr13	4214996	4215357	+	0	NA	Intergenic	MMERVK9C_I-int|LTR|ERVK	-18564	NM_001013785	432720	Mm.22832	NM_001013785	ENSMUSG00000071551	Akr1c19	1810010N06Rik	aldo-keto reductase family 1, member C19	protein-coding
chipseq_peak_10469	chr5	46442979	46444197	+	0	NA	Intergenic	Intergenic	-511179	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA
chipseq_peak_9786	chr4	50255134	50255572	+	0	NA	Intergenic	Intergenic	-409584	NM_001033351	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding
chipseq_peak_5310	chr15	71809853	71811122	+	0	NA	intron (NM_027174, intron 59 of 63)	intron (NM_027174, intron 59 of 63)	-82649	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
chipseq_peak_2025	chr10	117675770	117677287	+	0	NA	intron (NM_027468, intron 7 of 8)	RSINE1|SINE|B4	34230	NM_001288586	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding
chipseq_peak_5206	chr15	62755261	62756473	+	0	NA	Intergenic	L2a|LINE|L2	-536416	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_4854	chr15	18924670	18926306	+	0	NA	intron (NM_009865, intron 2 of 11)	intron (NM_009865, intron 2 of 11)	105159	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_13708	chr9	79608070	79608687	+	0	NA	intron (NM_001290308, intron 60 of 65)	intron (NM_001290308, intron 60 of 65)	-89076	NR_045336	100038575	Mm.367838	NR_045336		Gm10635	ENSMUSG00000074174	predicted gene 10635	ncRNA
chipseq_peak_6947	chr18	67188663	67189250	+	0	NA	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-16403	NM_024190	67064	Mm.73777	NM_024190		Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding
chipseq_peak_4510	chr14	88570039	88570454	+	0	NA	Intergenic	Lx7|LINE|L1	-98850	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_8329	chr2	154588626	154589578	+	0	NA	intron (NM_021534, intron 3 of 3)	intron (NM_021534, intron 3 of 3)	14571	NM_021534	59038	Mm.24673	NM_021534		Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding
chipseq_peak_13112	chr8	98533330	98533912	+	0	NA	Intergenic	Intergenic	-478266	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA
chipseq_peak_12325	chr7	91225650	91226808	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	135443	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_4461	chr14	80244621	80245713	+	0	NA	Intergenic	Lx9|LINE|L1	244865	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_7990	chr2	94963226	94964025	+	0	NA	Intergenic	Intergenic	-525439	NM_001305258	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding
chipseq_peak_9027	chr3	98042726	98043463	+	0	NA	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	29556	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding
chipseq_peak_4144	chr14	12498259	12498625	+	0	NA	intron (NM_012061, intron 13 of 28)	intron (NM_012061, intron 13 of 28)	-152577	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding
chipseq_peak_3983	chr13	104111587	104112634	+	0	NA	intron (NM_144838, intron 2 of 10)	intron (NM_144838, intron 2 of 10)	2320	NM_144838	218544	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding
chipseq_peak_5355	chr15	83992109	83992721	+	0	NA	intron (NM_029946, intron 6 of 31)	intron (NM_029946, intron 6 of 31)	-56320	NM_001161628	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding
chipseq_peak_1455	chr10	36726287	36726623	+	0	NA	intron (NM_001253355, intron 4 of 5)	intron (NM_001253355, intron 4 of 5)	219648	NM_001081208	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chipseq_peak_2075	chr10	124602284	124603980	+	0	NA	Intergenic	Intergenic	134058	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo
chipseq_peak_13095	chr8	96583158	96584394	+	0	NA	Intergenic	Intergenic	-37803	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_11623	chr6	80446573	80447299	+	0	NA	intron (NM_001134743, intron 2 of 2)	intron (NM_001134743, intron 2 of 2)	427293	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding
chipseq_peak_9839	chr4	59644960	59645246	+	0	NA	intron (NM_001015681, intron 1 of 3)	intron (NM_001015681, intron 1 of 3)	18892	NM_001015681	230259	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding
chipseq_peak_11033	chr5	132029189	132030337	+	0	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	149494	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_5735	chr16	49608426	49608814	+	0	NA	Intergenic	Intergenic	-90674	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding
chipseq_peak_7258	chr19	45380960	45381679	+	0	NA	intron (NM_009771, intron 1 of 13)	intron (NM_009771, intron 1 of 13)	17585	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding
chipseq_peak_97	chr1	22207348	22207716	+	0	NA	Intergenic	Intergenic	225311	NM_053270	116837	Mm.60061	NM_053270		Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding
chipseq_peak_11639	chr6	85218243	85219056	+	0	NA	intron (NM_178639, intron 13 of 13)	intron (NM_178639, intron 13 of 13)	30718	NM_010131	13796	Mm.391473	NM_010131		Emx1	-	empty spiracles homeobox 1	protein-coding
chipseq_peak_5658	chr16	41846566	41847389	+	0	NA	intron (NM_175548, intron 1 of 5)	intron (NM_175548, intron 1 of 5)	313635	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_7644	chr2	44696338	44696888	+	0	NA	intron (NM_172662, intron 5 of 10)	intron (NM_172662, intron 5 of 10)	165009	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_7794	chr2	61643053	61643547	+	0	NA	intron (NM_001164071, intron 5 of 8)	intron (NM_001164071, intron 5 of 8)	50203	NM_001164072	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding
chipseq_peak_7698	chr2	50959203	50959731	+	0	NA	Intergenic	MER63B|DNA|hAT-Blackjack	49783	NR_033595	227885	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	OTTMUSG00000012426	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo
chipseq_peak_9949	chr4	79309712	79310544	+	0	NA	Intergenic	Intergenic	716081	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_6757	chr18	39454431	39454808	+	0	NA	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	32626	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding
chipseq_peak_2593	chr11	111055607	111056733	+	0	NA	Intergenic	Intergenic	-9994	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
chipseq_peak_1028	chr1	168991487	168992245	+	0	NA	Intergenic	Intergenic	501223	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA
chipseq_peak_1023	chr1	168240871	168241579	+	0	NA	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	190944	NM_008783	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding
chipseq_peak_7807	chr2	62460161	62460685	+	0	NA	Intergenic	Plat_L3|LINE|CR1	23230	NM_008100	14526	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding
chipseq_peak_6247	chr17	42458152	42458483	+	0	NA	intron (NM_028474, intron 3 of 3)	intron (NM_028474, intron 3 of 3)	142370	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding
chipseq_peak_9485	chr4	7961543	7962198	+	0	NA	Intergenic	Intergenic	277171	NM_007592	12319	Mm.119320	NM_007592		Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding
chipseq_peak_7221	chr19	31948578	31948914	+	0	NA	3' UTR (NM_001081074, exon 12 of 12)	3' UTR (NM_001081074, exon 12 of 12)	79985	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf	APOBEC1 complementation factor	protein-coding
chipseq_peak_12496	chr7	121634885	121635336	+	0	NA	Intergenic	MER53|DNA|hAT	45207	NR_131051	69407		NR_131051		1700025J12Rik	-	RIKEN cDNA 1700025J12 gene	ncRNA
chipseq_peak_10233	chr4	153770545	153771204	+	0	NA	Intergenic	Intergenic	179602	NR_040670	407793	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA
chipseq_peak_13737	chr9	86419277	86419972	+	0	NA	intron (NM_027394, intron 8 of 9)	intron (NM_027394, intron 8 of 9)	45292	NM_027394	70348	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding
chipseq_peak_14080	chrX	135928677	135928899	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	42937	NM_198161	70237	Mm.440847	NM_198161	ENSMUSG00000072964	Bhlhb9	2700087I09Rik	basic helix-loop-helix domain containing, class B9	protein-coding
chipseq_peak_219	chr1	36800564	36801058	+	0	NA	intron (NM_018872, intron 33 of 40)	intron (NM_018872, intron 33 of 40)	21827	NM_001289612	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding
chipseq_peak_773	chr1	127124944	127125573	+	0	NA	Intergenic	Intergenic	-79728	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding
chipseq_peak_10961	chr5	121115605	121116065	+	0	NA	Intergenic	Intergenic	75562	NM_001109992	19247	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding
chipseq_peak_13338	chr9	18277410	18278047	+	0	NA	Intergenic	Intergenic	-14539	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding
chipseq_peak_3148	chr12	72710044	72710437	+	0	NA	Intergenic	Intergenic	-45412	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding
chipseq_peak_6982	chr18	69766963	69767606	+	0	NA	Intergenic	Intergenic	-158275	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding
chipseq_peak_12036	chr7	16938347	16938690	+	0	NA	Intergenic	Intergenic	-6164	NM_001099636	434128	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding
chipseq_peak_925	chr1	150913555	150914067	+	0	NA	intron (NM_001024720, intron 1 of 106)	intron (NM_001024720, intron 1 of 106)	79624	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|Gm201	hemicentin 1	protein-coding
chipseq_peak_10814	chr5	97415817	97416609	+	0	NA	intron (NR_045981, intron 2 of 7)	intron (NR_045981, intron 2 of 7)	23796	NR_045981	75814	Mm.444705	NR_045981		4930467D21Rik	4930448L09Rik|BB013444	RIKEN cDNA 4930467D21 gene	ncRNA
chipseq_peak_945	chr1	155192975	155193526	+	0	NA	exon (NM_021433, exon 6 of 8)	exon (NM_021433, exon 6 of 8)	34547	NM_021433	58244	Mm.66264	NM_021433		Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding
chipseq_peak_4255	chr14	37273437	37273952	+	0	NA	Intergenic	Intergenic	-138372	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
chipseq_peak_4546	chr14	93534392	93535529	+	0	NA	intron (NM_001271798, intron 2 of 3)	intron (NM_001271798, intron 2 of 3)	353928	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_6498	chr17	88320837	88321204	+	0	NA	Intergenic	Intergenic	-119692	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding
chipseq_peak_3465	chr13	20116984	20117697	+	0	NA	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	26833	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding
chipseq_peak_4317	chr14	59513846	59514488	+	0	NA	intron (NM_026908, intron 6 of 10)	intron (NM_026908, intron 6 of 10)	73186	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding
chipseq_peak_8044	chr2	104326990	104327605	+	0	NA	intron (NM_001033347, intron 1 of 20)	intron (NM_001033347, intron 1 of 20)	83037	NM_001033347	241589	Mm.358909	NM_001033347	ENSMUSG00000068373	D430041D05Rik	9630056G07Rik|G2	RIKEN cDNA D430041D05 gene	protein-coding
chipseq_peak_4377	chr14	67085322	67085650	+	0	NA	Intergenic	Intergenic	-13015	NM_028032	71978	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding
chipseq_peak_13565	chr9	52551516	52552384	+	0	NA	Intergenic	Intergenic	127487	NM_178906	330941	Mm.335160	NM_177907	ENSMUSG00000078307	AI593442	E130102D23	expressed sequence AI593442	protein-coding
chipseq_peak_11829	chr6	108611302	108611672	+	0	NA	intron (NR_040757, intron 4 of 4)	intron (NR_040757, intron 4 of 4)	11680	NR_040757	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA
chipseq_peak_13340	chr9	21509969	21510741	+	0	NA	promoter-TSS (NM_010744)	promoter-TSS (NM_010744)	-169	NM_010744	17083	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane emp24 domain containing 1	protein-coding
chipseq_peak_12	chr1	6866062	6867246	+	0	NA	Intergenic	Intergenic	136603	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
chipseq_peak_3094	chr12	67149314	67150414	+	0	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	72685	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_10680	chr5	75410301	75411174	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-164250	NM_001122733	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	kit oncogene	protein-coding
chipseq_peak_6223	chr17	30454137	30455135	+	0	NA	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	-58456	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo
chipseq_peak_7442	chr2	8510010	8510474	+	0	NA	Intergenic	Intergenic	-679273	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_6728	chr18	32982928	32983617	+	0	NA	intron (NM_009793, intron 1 of 10)	intron (NM_009793, intron 1 of 10)	44231	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding
chipseq_peak_920	chr1	149378191	149378645	+	0	NA	Intergenic	Intergenic	544021	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
chipseq_peak_9969	chr4	80864557	80865180	+	0	NA	Intergenic	Intergenic	30655	NM_001282014	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_777	chr1	127975172	127977108	+	0	NA	exon (NM_027678, exon 13 of 21)	exon (NM_027678, exon 13 of 21)	107367	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding
chipseq_peak_10438	chr5	42575905	42576314	+	0	NA	Intergenic	Intergenic	508149	NR_131130	433882	Mm.319353	NR_131130		Gm16223	EG433882|OTTMUSG00000031875	predicted gene 16223	ncRNA
chipseq_peak_685	chr1	105944809	105945577	+	0	NA	Intergenic	Intergenic	-45213	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding
chipseq_peak_574	chr1	82987243	82988101	+	0	NA	Intergenic	Intergenic	50776	NM_030556	80721	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding
chipseq_peak_2438	chr11	79519384	79520784	+	0	NA	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	3678	NM_001077496	216984	Mm.439665	NM_001077496		Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding
chipseq_peak_348	chr1	54597645	54598409	+	0	NA	Intergenic	L1ME4b|LINE|L1	-40343	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding
chipseq_peak_3351	chr12	116615631	116617258	+	0	NA	intron (NM_011215, intron 2 of 22)	L1MEg|LINE|L1	130724	NM_011215	19276	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding
chipseq_peak_5462	chr15	103933359	103933759	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-34247	NM_009267	20770	Mm.1280	NM_009267	ENSMUSG00000036925	Mucl2	Spt-1|Spt1	mucin-like 2	protein-coding
chipseq_peak_6404	chr17	70199550	70200030	+	0	NA	Intergenic	Intergenic	-225002	NM_027712	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding
chipseq_peak_8991	chr3	85338814	85339580	+	0	NA	Intergenic	Intergenic	21678	NR_040542	73283	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA
chipseq_peak_9575	chr4	19329597	19330437	+	0	NA	intron (NM_013927, intron 3 of 17)	intron (NM_013927, intron 3 of 17)	49167	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding
chipseq_peak_4474	chr14	81957089	81957666	+	0	NA	Intergenic	Intergenic	1957075	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_3362	chr12	117664099	117665300	+	0	NA	intron (NM_175930, intron 11 of 27)	intron (NM_175930, intron 11 of 27)	148220	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chipseq_peak_11538	chr6	58862603	58863010	+	0	NA	intron (NM_028705, intron 8 of 24)	intron (NM_028705, intron 8 of 24)	29106	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding
chipseq_peak_7430	chr2	8337387	8338793	+	0	NA	Intergenic	Intergenic	-851425	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_4074	chr13	112187312	112187665	+	0	NA	Intergenic	Intergenic	-100963	NM_029898	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding
chipseq_peak_11669	chr6	94271636	94272226	+	0	NA	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	11986	NM_001286784	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
chipseq_peak_332	chr1	52506233	52506559	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-5948	NM_008667	17936	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding
chipseq_peak_1145	chr1	181598551	181599052	+	0	NA	Intergenic	Intergenic	-87350	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding
chipseq_peak_5877	chr16	67076284	67076762	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	419405	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA
chipseq_peak_906	chr1	147227780	147228196	+	0	NA	Intergenic	Intergenic	730301	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_1379	chr10	27132853	27133707	+	0	NA	intron (NM_008481, intron 34 of 63)	intron (NM_008481, intron 34 of 63)	-256586	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_4619	chr14	105720731	105723004	+	0	NA	Intergenic	Intergenic	-98097	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
chipseq_peak_6762	chr18	40328854	40329780	+	0	NA	intron (NM_026135, intron 1 of 1)	L1M4c|LINE|L1	70956	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding
chipseq_peak_13731	chr9	85048412	85049134	+	0	NA	Intergenic	Intergenic	274375	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA
chipseq_peak_5831	chr16	63090738	63092662	+	0	NA	Intergenic	Intergenic	237393	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
chipseq_peak_12776	chr8	41235267	41235615	+	0	NA	Intergenic	Intergenic	-4318	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding
chipseq_peak_13256	chr8	127386050	127386602	+	0	NA	intron (NM_001309391, intron 12 of 24)	intron (NM_001309391, intron 12 of 24)	86674	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_8403	chr2	170848141	170849624	+	0	NA	intron (NM_001163686, intron 6 of 7)	intron (NM_001163686, intron 6 of 7)	117075	NM_029761	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding
chipseq_peak_12719	chr8	32404464	32404771	+	0	NA	Intergenic	MIRc|SINE|MIR	252722	NR_046039	666589	Mm.367675	NR_046039		Gm8179	EG666589	predicted gene 8179	ncRNA
chipseq_peak_13180	chr8	109359251	109361381	+	0	NA	Intergenic	Intergenic	-19408	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo
chipseq_peak_12832	chr8	48723237	48724363	+	0	NA	Intergenic	Intergenic	-49110	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_9369	chr3	150359364	150359872	+	0	NA	Intergenic	Intergenic	-1078264	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_11988	chr6	144197724	144198148	+	0	NA	intron (NM_001113559, intron 1 of 13)	intron (NM_001113559, intron 1 of 13)	11632	NM_011444	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
chipseq_peak_12105	chr7	51758636	51760352	+	0	NA	Intergenic	MIR|SINE|MIR	102773	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding
chipseq_peak_659	chr1	99992845	99993259	+	0	NA	intron (NM_172851, intron 3 of 23)	intron (NM_172851, intron 3 of 23)	220287	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding
chipseq_peak_5628	chr16	39579268	39579677	+	0	NA	Intergenic	Intergenic	677127	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_10086	chr4	103324628	103326116	+	0	NA	exon (NM_025909, exon 5 of 9)	exon (NM_025909, exon 5 of 9)	11526	NM_025909	67013	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 homolog, zinc metallopeptidase (S. cerevisiae)	protein-coding
chipseq_peak_14104	chrX	157734492	157734995	+	0	NA	intron (NM_001252591, intron 4 of 4)	intron (NM_001252591, intron 4 of 4)	35770	NM_001252591	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding
chipseq_peak_279	chr1	41981424	41982226	+	0	NA	Intergenic	Intergenic	713000	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
chipseq_peak_9934	chr4	77926472	77927577	+	0	NA	intron (NM_011211, intron 1 of 39)	intron (NM_011211, intron 1 of 39)	284871	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_12923	chr8	59499225	59500077	+	0	NA	Intergenic	Intergenic	-325998	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
chipseq_peak_6852	chr18	54592685	54593540	+	0	NA	Intergenic	Intergenic	-18632	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA
chipseq_peak_8995	chr3	85569228	85571517	+	0	NA	Intergenic	Intergenic	-3757	NM_144896	229487	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding
chipseq_peak_7012	chr18	75195491	75196025	+	0	NA	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	101559	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA
chipseq_peak_3817	chr13	84055044	84059256	+	0	NA	intron (NR_131220, intron 1 of 1)	intron (NR_131220, intron 1 of 1)	7624	NR_131220	553095	Mm.39702	NR_131220		Gm17750	-	predicted gene, 17750	ncRNA
chipseq_peak_4611	chr14	105562928	105563197	+	0	NA	Intergenic	L2|LINE|L2	-26487	NR_102319	380930	Mm.427836	NR_102319		9330188P03Rik	Gm1589|mgt-6	RIKEN cDNA 9330188P03 gene	ncRNA
chipseq_peak_2829	chr12	34497724	34499533	+	0	NA	intron (NM_024124, intron 2 of 11)	intron (NM_024124, intron 2 of 11)	30261	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
chipseq_peak_11361	chr6	33911626	33914392	+	0	NA	intron (NM_009148, intron 15 of 17)	intron (NM_009148, intron 15 of 17)	-116439	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding
chipseq_peak_6919	chr18	65188310	65188836	+	0	NA	intron (NM_031881, intron 18 of 29)	Lx7|LINE|L1	-60288	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA
chipseq_peak_6993	chr18	70785992	70786902	+	0	NA	Intergenic	Intergenic	218155	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding
chipseq_peak_11865	chr6	114669557	114671235	+	0	NA	intron (NM_001253718, intron 2 of 19)	B4|SINE|B4	27299	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding
chipseq_peak_10547	chr5	58736599	58737976	+	0	NA	Intergenic	Intergenic	-284289	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA
chipseq_peak_12048	chr7	29180237	29181154	+	0	NA	promoter-TSS (NM_026545)	promoter-TSS (NM_026545)	-22	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding
chipseq_peak_7178	chr19	27122404	27124540	+	0	NA	Intergenic	Intergenic	-93548	NM_013703	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding
chipseq_peak_2118	chr11	5959954	5960888	+	0	NA	intron (NM_019661, intron 2 of 6)	intron (NM_019661, intron 2 of 6)	4663	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 homolog (S. Cerevisiae)	protein-coding
chipseq_peak_1843	chr10	98354338	98355226	+	0	NA	Intergenic	L1MA5|LINE|L1	-2915	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA
chipseq_peak_8416	chr2	179795481	179795925	+	0	NA	intron (NM_009867, intron 3 of 15)	intron (NM_009867, intron 3 of 15)	180943	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4a	135kDa|AI450312|TAFII130|TAFII135|Taf2c1	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor	protein-coding
chipseq_peak_2039	chr10	120038071	120038646	+	0	NA	exon (NM_133442, exon 16 of 22)	exon (NM_133442, exon 16 of 22)	45436	NR_102387	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding
chipseq_peak_808	chr1	132591331	132592019	+	0	NA	intron (NM_182716, intron 24 of 29)	intron (NM_182716, intron 24 of 29)	-48735	NM_177129	21367	Mm.260861	NM_011531		Cntn2	D130012K04Rik|TAG-1|Tax	contactin 2	protein-coding
chipseq_peak_13942	chr9	120281117	120281611	+	0	NA	Intergenic	Intergenic	-22709	NM_144557	245049	Mm.100936	NM_144557	ENSMUSG00000041794	Myrip	A230081N12Rik|Slac2-c|Slac2c	myosin VIIA and Rab interacting protein	protein-coding
chipseq_peak_9957	chr4	80203780	80204782	+	0	NA	Intergenic	Intergenic	-629932	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_4307	chr14	54843529	54844524	+	0	NA	Intergenic	Intergenic	16464	NM_183174	239099	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding
chipseq_peak_9758	chr4	44961202	44961504	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	-20041	NM_001312880	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding
chipseq_peak_12456	chr7	114058224	114059760	+	0	NA	exon (NM_025846, exon 3 of 6)	exon (NM_025846, exon 3 of 6)	58789	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene homolog 2	protein-coding
chipseq_peak_5539	chr16	24808980	24810557	+	0	NA	intron (NM_001145952, intron 7 of 11)	intron (NM_001145952, intron 7 of 11)	87913	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding
chipseq_peak_5787	chr16	54919596	54920214	+	0	NA	Intergenic	Intergenic	363332	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
chipseq_peak_7183	chr19	27548082	27548767	+	0	NA	Intergenic	L1MB2|LINE|L1	118387	NR_027987	107372	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA
chipseq_peak_9998	chr4	85585218	85586136	+	0	NA	Intergenic	Intergenic	380221	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding
chipseq_peak_2211	chr11	26061096	26063117	+	0	NA	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-140134	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
chipseq_peak_13956	chr9	122244263	122244658	+	0	NA	intron (NM_133979, intron 11 of 12)	Tigger13a|DNA|TcMar-Tigger	29568	NR_106185	102465896		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA
chipseq_peak_1281	chr10	13674650	13674988	+	0	NA	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-121677	NM_019961	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding
chipseq_peak_2464	chr11	84347709	84349677	+	0	NA	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	153255	NM_133360	107476	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding
chipseq_peak_7219	chr19	31480121	31480427	+	0	NA	intron (NM_011160, intron 2 of 17)	intron (NM_011160, intron 2 of 17)	184096	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding
chipseq_peak_3566	chr13	43230264	43230676	+	0	NA	intron (NM_001033399, intron 1 of 1)	intron (NM_001033399, intron 1 of 1)	-58969	NM_001252639	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding
chipseq_peak_2565	chr11	108221268	108221864	+	0	NA	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	122322	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding
chipseq_peak_9609	chr4	23900128	23900578	+	0	NA	Intergenic	L1_Rod|LINE|L1	-596109	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_4414	chr14	75455214	75455950	+	0	NA	promoter-TSS (NM_001128093)	promoter-TSS (NM_001128093)	-400	NM_001128093	380918	Mm.484360	NM_001128093	ENSMUSG00000091722	Siah3	Gm912	seven in absentia homolog 3 (Drosophila)	protein-coding
chipseq_peak_8469	chr3	13946214	13947342	+	0	NA	intron (NM_001163329, intron 1 of 7)	intron (NM_001163329, intron 1 of 7)	406	NM_001163329	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding
chipseq_peak_6405	chr17	70204791	70205343	+	0	NA	Intergenic	Intergenic	-219725	NM_027712	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding
chipseq_peak_2126	chr11	9594079	9595008	+	0	NA	intron (NM_178259, intron 55 of 61)	intron (NM_178259, intron 55 of 61)	402601	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
chipseq_peak_13881	chr9	111838159	111838725	+	0	NA	Intergenic	Intergenic	-148226	NM_016853	20840	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding
chipseq_peak_10206	chr4	139927328	139927601	+	0	NA	intron (NR_045159, intron 2 of 2)	(TTAA)n|Simple_repeat|Simple_repeat	5610	NR_045160	71235	Mm.61253	NR_045159	ENSMUSG00000085928	4933427I22Rik	-	RIKEN cDNA 4933427I22 gene	ncRNA
chipseq_peak_3727	chr13	77889743	77890887	+	0	NA	intron (NM_001163419, intron 5 of 9)	intron (NM_001163419, intron 5 of 9)	-134587	NM_029315	75507	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding
chipseq_peak_13656	chr9	65759190	65759544	+	0	NA	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	68197	NM_172536	214812	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding
chipseq_peak_3945	chr13	99147567	99148324	+	0	NA	Intergenic	Intergenic	-36878	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding
chipseq_peak_3773	chr13	82586085	82586637	+	0	NA	Intergenic	Intergenic	111972	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_2169	chr11	19830788	19831153	+	0	NA	Intergenic	Intergenic	-93472	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding
chipseq_peak_11226	chr6	16868329	16868610	+	0	NA	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	29972	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding
chipseq_peak_7910	chr2	76928918	76929202	+	0	NA	intron (NM_028004, intron 42 of 191)	intron (NM_028004, intron 42 of 191)	53487	NM_011652	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding
chipseq_peak_12891	chr8	55101954	55104417	+	0	NA	Intergenic	Intergenic	148457	NM_153581	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_12273	chr7	83011427	83012921	+	0	NA	Intergenic	L1MB3|LINE|L1	-40783	NR_045855	71285	Mm.76818	NR_045855		4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA
chipseq_peak_13198	chr8	112906146	112907537	+	0	NA	Intergenic	Intergenic	-160421	NR_033584	791378	Mm.350576	NR_033584		Gm10280	ENSMUSG00000069883	predicted gene 10280	ncRNA
chipseq_peak_6960	chr18	68173260	68173933	+	0	NA	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	87377	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA
chipseq_peak_11692	chr6	97693000	97693744	+	0	NA	Intergenic	Intergenic	-75715	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013	FERM domain containing 4B	protein-coding
chipseq_peak_6137	chr17	3235634	3236043	+	0	NA	Intergenic	Intergenic	-90735	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
chipseq_peak_13382	chr9	27568519	27569428	+	0	NA	Intergenic	Intergenic	171761	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding
chipseq_peak_618	chr1	94979413	94979766	+	0	NA	Intergenic	Intergenic	182147	NR_040473	74689	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA
chipseq_peak_8130	chr2	116911160	116911591	+	0	NA	intron (NR_040335, intron 3 of 3)	L2c|LINE|L2	11223	NR_040335	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA
chipseq_peak_6293	chr17	51746775	51747600	+	0	NA	intron (NM_009122, intron 9 of 10)	intron (NM_009122, intron 9 of 10)	64867	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding
chipseq_peak_12700	chr8	28912349	28912739	+	0	NA	intron (NM_153135, intron 1 of 17)	intron (NM_153135, intron 1 of 17)	307092	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_6402	chr17	69841614	69842553	+	0	NA	Intergenic	L1M4|LINE|L1	402757	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
chipseq_peak_11816	chr6	107541286	107542339	+	0	NA	intron (NM_008516, intron 1 of 1)	intron (NM_008516, intron 1 of 1)	12086	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding
chipseq_peak_4221	chr14	28907609	28907904	+	0	NA	intron (NM_009785, intron 37 of 37)	intron (NM_009785, intron 37 of 37)	-110452	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding
chipseq_peak_7755	chr2	57900520	57900983	+	0	NA	Intergenic	Intergenic	-97404	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
chipseq_peak_2985	chr12	52209110	52210370	+	0	NA	intron (NM_029760, intron 6 of 10)	intron (NM_029760, intron 6 of 10)	111994	NM_029760	76826	Mm.244781	NM_029760		Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding
chipseq_peak_4916	chr15	24777546	24778646	+	0	NA	Intergenic	Intergenic	635668	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
chipseq_peak_10349	chr5	21034163	21034653	+	0	NA	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	21389	NM_011203	19248	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding
chipseq_peak_4978	chr15	34062795	34063749	+	0	NA	Intergenic	Intergenic	-19447	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding
chipseq_peak_13417	chr9	30071851	30072247	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-108920	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_13176	chr8	108286036	108286494	+	0	NA	Intergenic	Intergenic	298412	NR_077224	109215	Mm.65282	NR_077224		Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA
chipseq_peak_5733	chr16	49497594	49497904	+	0	NA	Intergenic	L1ME4b|LINE|L1	-201545	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding
chipseq_peak_7398	chr2	7339980	7340310	+	0	NA	intron (NM_001110231, intron 2 of 15)	L1MA8|LINE|L1	55855	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_7741	chr2	56595915	56596372	+	0	NA	Intergenic	Intergenic	-189668	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
chipseq_peak_7138	chr19	22585013	22585250	+	0	NA	intron (NM_177341, intron 1 of 26)	intron (NM_177341, intron 1 of 26)	-107488	NM_001035244	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding
chipseq_peak_858	chr1	140531420	140531923	+	0	NA	intron (NM_001081027, intron 20 of 27)	intron (NM_001081027, intron 20 of 27)	124731	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_11371	chr6	35539915	35540275	+	0	NA	promoter-TSS (NM_008098)	promoter-TSS (NM_008098)	-207	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding
chipseq_peak_8175	chr2	131851260	131851700	+	0	NA	Intergenic	Intergenic	-3824	NR_029381	414081	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA
chipseq_peak_11651	chr6	89624102	89625030	+	0	NA	Intergenic	Intergenic	-19422	NM_153162	232223	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TR2|Tgr	thioredoxin reductase 3	protein-coding
chipseq_peak_1230	chr10	5445475	5445782	+	0	NA	intron (NM_153399, intron 3 of 31)	intron (NM_153399, intron 3 of 31)	105064	NM_153399	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756	spectrin repeat containing, nuclear envelope 1	protein-coding
chipseq_peak_11592	chr6	75302365	75302855	+	0	NA	Intergenic	Intergenic	-1831589	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA
chipseq_peak_13536	chr9	49935680	49936569	+	0	NA	Intergenic	Intergenic	-136731	NM_001311065	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding
chipseq_peak_2378	chr11	63766244	63766612	+	0	NA	Intergenic	Intergenic	155856	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding
chipseq_peak_1220	chr1	194315541	194316497	+	0	NA	Intergenic	Intergenic	-93260	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_8675	chr3	49008693	49009862	+	0	NA	Intergenic	Intergenic	-400177	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo
chipseq_peak_11794	chr6	105095355	105095870	+	0	NA	Intergenic	Intergenic	397056	NR_040297	100503536	Mm.366960	NR_040297	ENSMUSG00000108237	Gm19757	-	predicted gene, 19757	ncRNA
chipseq_peak_9367	chr3	149936196	149936511	+	0	NA	Intergenic	Intergenic	661616	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_10353	chr5	21518178	21518663	+	0	NA	intron (NM_177076, intron 16 of 19)	intron (NM_177076, intron 16 of 19)	-25107	NM_028977	74511	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding
chipseq_peak_11597	chr6	76329307	76329724	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-913202	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_5156	chr15	56107649	56108867	+	0	NA	Intergenic	Intergenic	-201309	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding
chipseq_peak_9583	chr4	20247824	20248158	+	0	NA	intron (NM_172987, intron 4 of 4)	intron (NM_172987, intron 4 of 4)	205939	NM_010281	14590	Mm.20461	NM_010281		Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding
chipseq_peak_4292	chr14	49348137	49348663	+	0	NA	intron (NM_029238, intron 1 of 7)	intron (NM_029238, intron 1 of 7)	-102972	NM_025956	67082	Mm.87439	NM_025956	ENSMUSG00000021850	1700011H14Rik	-	RIKEN cDNA 1700011H14 gene	protein-coding
chipseq_peak_10622	chr5	68071696	68072237	+	0	NA	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	40131	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding
chipseq_peak_2367	chr11	58400427	58400875	+	0	NA	Intergenic	Intergenic	-20460	NM_027239	69864	Mm.45641	NM_027239	ENSMUSG00000013653	1810065E05Rik	AV047390	RIKEN cDNA 1810065E05 gene	protein-coding
chipseq_peak_6114	chr16	92719721	92720047	+	0	NA	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-22555	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding
chipseq_peak_4538	chr14	92487262	92488727	+	0	NA	Intergenic	(TAGA)n|Simple_repeat|Simple_repeat	1400894	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_8430	chr3	4796804	4798194	+	0	NA	Intergenic	Intergenic	-1209	NR_045272	100503859	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA
chipseq_peak_8509	chr3	20982658	20983337	+	0	NA	Intergenic	Intergenic	-615820	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
chipseq_peak_2121	chr11	6109840	6110294	+	0	NA	intron (NM_173748, intron 5 of 5)	intron (NM_173748, intron 5 of 5)	-44319	NM_001174053	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	-	calcium/calmodulin-dependent protein kinase II, beta	protein-coding
chipseq_peak_6777	chr18	42777802	42778673	+	0	NA	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	121269	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
chipseq_peak_3893	chr13	93073258	93073959	+	0	NA	intron (NR_036451, intron 1 of 2)	intron (NR_036451, intron 1 of 2)	304	NR_036451	100502942	Mm.441946	NM_177623		Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA
chipseq_peak_4452	chr14	79721712	79722732	+	0	NA	Intergenic	Intergenic	-16209	NR_030436	791080		NR_030436	ENSMUSG00000076453	Mir759	Mirn759|mir-759|mmu-mir-759	microRNA 759	ncRNA
chipseq_peak_4147	chr14	12784274	12784690	+	0	NA	intron (NM_012061, intron 1 of 28)	intron (NM_012061, intron 1 of 28)	38597	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding
chipseq_peak_10639	chr5	71439976	71440804	+	0	NA	Intergenic	Intergenic	107815	NM_030052	78174	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding
chipseq_peak_4359	chr14	64436494	64438176	+	0	NA	intron (NM_001253712, intron 1 of 5)	intron (NM_001253712, intron 1 of 5)	3691	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_7554	chr2	37925899	37926213	+	0	NA	intron (NM_146122, intron 13 of 21)	intron (NM_146122, intron 13 of 21)	149807	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding
chipseq_peak_8314	chr2	146414570	146415200	+	0	NA	intron (NM_001033348, intron 16 of 40)	intron (NM_001033348, intron 16 of 40)	97119	NM_001033348	241694	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding
chipseq_peak_11778	chr6	103952965	103954421	+	0	NA	Intergenic	Intergenic	442817	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_11975	chr6	143320459	143320931	+	0	NA	Intergenic	Intergenic	74807	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA
chipseq_peak_8799	chr3	62725806	62726949	+	0	NA	Intergenic	Intergenic	-121237	NM_177346	229357	Mm.95181	NM_177346		Gpr149	9630018L10Rik|Ieda|PGR10|R35	G protein-coupled receptor 149	protein-coding
chipseq_peak_12706	chr8	29527348	29528072	+	0	NA	Intergenic	Intergenic	-308074	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_281	chr1	42043689	42044247	+	0	NA	Intergenic	Intergenic	650857	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
chipseq_peak_11244	chr6	18458763	18459234	+	0	NA	intron (NM_080285, intron 2 of 22)	intron (NM_080285, intron 2 of 22)	55827	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_11131	chr6	4405156	4405809	+	0	NA	Intergenic	Intergenic	-100215	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding
chipseq_peak_4441	chr14	78203370	78204829	+	0	NA	Intergenic	Intergenic	-12621	NR_035499	100316715		NR_035499	ENSMUSG00000087932	Mir1971	mmu-mir-1971	microRNA 1971	ncRNA
chipseq_peak_8370	chr2	163809220	163809591	+	0	NA	Intergenic	Intergenic	-11429	NM_016873	22403	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding
chipseq_peak_5053	chr15	44583767	44584208	+	0	NA	intron (NM_138674, intron 70 of 76)	intron (NM_138674, intron 70 of 76)	-35654	NM_019480	55960	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding
chipseq_peak_8791	chr3	61768393	61769042	+	0	NA	Intergenic	Intergenic	404210	NM_028712	74012	Mm.422674	NM_028712		Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding
chipseq_peak_9613	chr4	24077854	24078304	+	0	NA	Intergenic	Intergenic	-418383	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_8465	chr3	13495282	13495859	+	0	NA	intron (NM_178631, intron 2 of 9)	intron (NM_178631, intron 2 of 9)	23915	NM_001163328	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding
chipseq_peak_5713	chr16	47525358	47527011	+	0	NA	Intergenic	Intergenic	-757551	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_6639	chr18	21998989	21999453	+	0	NA	intron (NM_027616, intron 20 of 22)	intron (NM_027616, intron 20 of 22)	172175	NM_027616	70950	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding
chipseq_peak_7195	chr19	28452604	28453437	+	0	NA	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-225204	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_2716	chr12	14746900	14747560	+	0	NA	Intergenic	Intergenic	303159	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
chipseq_peak_9985	chr4	83093285	83093735	+	0	NA	Intergenic	Intergenic	-41343	NM_001198811	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding
chipseq_peak_7196	chr19	28574199	28574837	+	0	NA	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-103706	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_5365	chr15	86780963	86781251	+	0	NA	Intergenic	Intergenic	566648	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding
chipseq_peak_2149	chr11	14677041	14677843	+	0	NA	Intergenic	Intergenic	78202	NM_001164166	432536	Mm.33646	NM_001164166		Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding
chipseq_peak_4517	chr14	88975983	88976340	+	0	NA	Intergenic	Lx7|LINE|L1	-504765	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_11967	chr6	141686933	141687499	+	0	NA	TTS (NM_020495)	TTS (NM_020495)	57698	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding
chipseq_peak_13763	chr9	93186626	93187279	+	0	NA	Intergenic	Intergenic	-181219	NR_040756	78349	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA
chipseq_peak_7943	chr2	80045537	80045831	+	0	NA	intron (NM_001159582, intron 2 of 15)	intron (NM_001159582, intron 2 of 15)	83287	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding
chipseq_peak_5821	chr16	61840777	61841110	+	0	NA	Intergenic	Intergenic	945773	NM_178925	106338	Mm.26321	NM_178925		Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding
chipseq_peak_5812	chr16	60152378	60152961	+	0	NA	intron (NM_007938, intron 5 of 17)	intron (NM_007938, intron 5 of 17)	452862	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding
chipseq_peak_13511	chr9	47612844	47613213	+	0	NA	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	82676	NM_207675	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding
chipseq_peak_6408	chr17	70629971	70630520	+	0	NA	intron (NM_027712, intron 3 of 9)	intron (NM_027712, intron 3 of 9)	68498	NM_001128181	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding
chipseq_peak_6868	chr18	55343925	55344607	+	0	NA	Intergenic	Intergenic	-354086	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_12632	chr8	10489594	10490973	+	0	NA	intron (NM_001081397, intron 23 of 35)	intron (NM_001081397, intron 23 of 35)	336360	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
chipseq_peak_13084	chr8	92164594	92164955	+	0	NA	Intergenic	MLTR14|LTR|ERV1	191346	NR_033641	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA
chipseq_peak_8171	chr2	130950524	130950979	+	0	NA	intron (NM_009730, intron 6 of 28)	B3|SINE|B2	44255	NM_009730	11990	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mKIAA0548|mahogany|mg	attractin	protein-coding
chipseq_peak_10875	chr5	107414117	107415598	+	0	NA	intron (NM_001001804, intron 4 of 6)	intron (NM_001001804, intron 4 of 6)	11344	NM_001001804	384214	Mm.489863	NM_001001804	ENSMUSG00000033805	Ephx4	Abhd7|Ephxrp|Gm1382	epoxide hydrolase 4	protein-coding
chipseq_peak_2033	chr10	118902603	118902880	+	0	NA	Intergenic	Intergenic	24402	NR_110482	216377	Mm.208936	NR_110482		Gm38403	C230029M16	predicted gene, 38403	ncRNA
chipseq_peak_646	chr1	98097969	98098361	+	0	NA	Intergenic	Intergenic	-2533	NM_013626	18484	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
chipseq_peak_8600	chr3	36381588	36382277	+	0	NA	Intergenic	Intergenic	93592	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA
chipseq_peak_2792	chr12	29789117	29790275	+	0	NA	intron (NM_008666, intron 8 of 24)	intron (NM_008666, intron 8 of 24)	-103251	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA
chipseq_peak_7729	chr2	55505664	55506611	+	0	NA	intron (NM_008426, intron 3 of 3)	intron (NM_008426, intron 3 of 3)	70167	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
chipseq_peak_8423	chr2	181282265	181282564	+	0	NA	intron (NM_198169, intron 1 of 9)	MTE2b|LTR|ERVL-MaLR	5552	NM_198169	229004	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding
chipseq_peak_2205	chr11	25853097	25858319	+	0	NA	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-346532	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
chipseq_peak_2748	chr12	26086489	26087488	+	0	NA	Intergenic	Intergenic	123517	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
chipseq_peak_2407	chr11	69072898	69073968	+	0	NA	TTS (NM_028336)	TTS (NM_028336)	2624	NM_025838	66910	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding
chipseq_peak_6138	chr17	3243270	3244222	+	0	NA	Intergenic	Intergenic	-82827	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
chipseq_peak_783	chr1	128259618	128260608	+	0	NA	intron (NM_026390, intron 6 of 12)	intron (NM_026390, intron 6 of 12)	15932	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding
chipseq_peak_8307	chr2	145417814	145418242	+	0	NA	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	136954	NM_001037929	627302	Mm.445953	NM_001037929		Gm14092	OTTMUSG00000015643	predicted gene 14092	protein-coding
chipseq_peak_694	chr1	107588618	107589350	+	0	NA	Intergenic	Lx9|LINE|L1	-1022	NM_001159748	20725	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding
chipseq_peak_14114	chrX	158852220	158853333	+	0	NA	Intergenic	Intergenic	-403006	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding
chipseq_peak_407	chr1	57234247	57234656	+	0	NA	Intergenic	Lx9|LINE|L1	-19455	NR_037990	407809	Mm.134505	NR_037990	ENSMUSG00000101429	BC055402	-	cDNA sequence BC055402	ncRNA
chipseq_peak_6727	chr18	32954562	32956442	+	0	NA	intron (NM_009793, intron 1 of 10)	(TC)n|Simple_repeat|Simple_repeat	16461	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding
chipseq_peak_2432	chr11	77889211	77889799	+	0	NA	intron (NM_008952, intron 2 of 7)	MER58B|DNA|hAT-Charlie	4367	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding
chipseq_peak_12542	chr7	132372469	132373149	+	0	NA	Intergenic	Intergenic	-55654	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding
chipseq_peak_782	chr1	128140005	128141968	+	0	NA	intron (NM_181750, intron 1 of 26)	intron (NM_181750, intron 1 of 26)	37680	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding
chipseq_peak_3407	chr13	7785130	7785640	+	0	NA	Intergenic	Intergenic	-417481	NM_052977	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
chipseq_peak_1219	chr1	194302778	194303182	+	0	NA	Intergenic	Intergenic	-80221	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_6241	chr17	35993807	35994706	+	0	NA	promoter-TSS (NR_015618)	promoter-TSS (NR_015618)	-248	NR_015618	77810	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA
chipseq_peak_481	chr1	70037299	70037712	+	0	NA	intron (NM_029160, intron 11 of 16)	intron (NM_029160, intron 11 of 16)	85890	NM_025728	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding
chipseq_peak_10346	chr5	20263943	20264577	+	0	NA	intron (NM_001170745, intron 5 of 20)	intron (NM_001170745, intron 5 of 20)	356742	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
chipseq_peak_2154	chr11	16139317	16140086	+	0	NA	Intergenic	Intergenic	-118023	NM_145967	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding
chipseq_peak_6761	chr18	40219421	40219941	+	0	NA	promoter-TSS (NM_023311)	promoter-TSS (NM_023311)	-282	NM_023311	67180	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding
chipseq_peak_13221	chr8	117935027	117935723	+	0	NA	Intergenic	Intergenic	-133446	NM_026758	68533	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding
chipseq_peak_9198	chr3	123771149	123771737	+	0	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-80591	NR_121616	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding
chipseq_peak_12327	chr7	91284291	91285153	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	193936	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_8678	chr3	49519657	49520938	+	0	NA	Intergenic	Intergenic	237019	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding
chipseq_peak_6067	chr16	82430310	82430753	+	0	NA	Intergenic	Intergenic	1229834	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
chipseq_peak_5655	chr16	41728612	41730055	+	0	NA	intron (NM_175548, intron 1 of 5)	intron (NM_175548, intron 1 of 5)	195991	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_12434	chr7	111328427	111328781	+	0	NA	Intergenic	Intergenic	-205929	NR_015573	75479	Mm.381620	NR_015573		1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA
chipseq_peak_3434	chr13	15759111	15759710	+	0	NA	Intergenic	Intergenic	43220	NR_045507	71071	Mm.380845	NR_045507		4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA
chipseq_peak_8226	chr2	138278070	138278457	+	0	NA	promoter-TSS (NM_145534)	promoter-TSS (NM_145534)	-230	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
chipseq_peak_10818	chr5	97616858	97617228	+	0	NA	Intergenic	Intergenic	-160035	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding
chipseq_peak_3935	chr13	97958849	97960518	+	0	NA	intron (NM_012026, intron 22 of 35)	intron (NM_012026, intron 22 of 35)	246482	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
chipseq_peak_7715	chr2	53712552	53713651	+	0	NA	Intergenic	Intergenic	372451	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
chipseq_peak_2859	chr12	37755416	37756144	+	0	NA	Intergenic	Intergenic	-124925	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding
chipseq_peak_12226	chr7	74984078	74984431	+	0	NA	Intergenic	Intergenic	-45957	NR_131122	75205	Mm.399304	NR_131122		4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA
chipseq_peak_6548	chr17	93488476	93490997	+	0	NA	Intergenic	Intergenic	290568	NM_001315504	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
chipseq_peak_12804	chr8	44985598	44986087	+	0	NA	intron (NM_001081286, intron 1 of 25)	intron (NM_001081286, intron 1 of 25)	35634	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chipseq_peak_4068	chr13	111232149	111232778	+	0	NA	Intergenic	Intergenic	-3032	NR_045908	73129	Mm.417826	NR_045908		3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA
chipseq_peak_3	chr1	4786098	4786390	+	0	NA	promoter-TSS (NR_033530)	promoter-TSS (NR_033530)	-518	NR_033530	27395	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding
chipseq_peak_4183	chr14	21221531	21222528	+	0	NA	intron (NM_134079, intron 4 of 10)	intron (NM_134079, intron 4 of 10)	145877	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding
chipseq_peak_315	chr1	48177290	48177668	+	0	NA	Intergenic	Intergenic	-710354	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_1223	chr1	194578114	194578706	+	0	NA	Intergenic	Intergenic	-41419	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding
chipseq_peak_4631	chr14	106924150	106924964	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-438037	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
chipseq_peak_3444	chr13	16382855	16383332	+	0	NA	Intergenic	Intergenic	368618	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_7053	chr18	88703221	88703506	+	0	NA	Intergenic	Intergenic	190844	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
chipseq_peak_12079	chr7	46651861	46652376	+	0	NA	intron (NM_009414, intron 8 of 10)	Charlie1a|DNA|hAT-Charlie	-12311	NM_013789	27414	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
chipseq_peak_4210	chr14	27444920	27445366	+	0	NA	intron (NM_001114879, intron 6 of 23)	B3|SINE|B2	16296	NM_001114879	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding
chipseq_peak_9047	chr3	104090877	104091218	+	0	NA	intron (NM_001159354, intron 3 of 20)	intron (NM_001159354, intron 3 of 20)	-122731	NR_030676	100125931	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA
chipseq_peak_9987	chr4	83206988	83207354	+	0	NA	Intergenic	Intergenic	117018	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding
chipseq_peak_8008	chr2	97534979	97535509	+	0	NA	intron (NM_001289744, intron 1 of 1)	intron (NM_001289744, intron 1 of 1)	67587	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_12671	chr8	17552263	17552770	+	0	NA	Intergenic	Intergenic	-17131	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
chipseq_peak_7361	chr2	4485724	4486834	+	0	NA	intron (NM_001177843, intron 4 of 23)	RSINE1|SINE|B4	-73475	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding
chipseq_peak_2491	chr11	87470781	87471823	+	0	NA	intron (NM_031386, intron 2 of 30)	CpG	43711	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding
chipseq_peak_6426	chr17	74996773	74997675	+	0	NA	Intergenic	Lx8|LINE|L1	-8305	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding
chipseq_peak_11227	chr6	16912611	16913207	+	0	NA	Intergenic	Intergenic	-14468	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding
chipseq_peak_4076	chr13	112628075	112628364	+	0	NA	intron (NM_010029, intron 6 of 20)	intron (NM_010029, intron 6 of 20)	24091	NM_001145885	13206	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding
chipseq_peak_2387	chr11	66273734	66274213	+	0	NA	intron (NM_001034874, intron 2 of 4)	intron (NM_001034874, intron 2 of 4)	-105422	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding
chipseq_peak_10252	chr5	5501639	5501995	+	0	NA	Intergenic	Intergenic	12972	NM_001193660	64945	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding
chipseq_peak_3734	chr13	78602371	78603563	+	0	NA	Intergenic	Intergenic	-403985	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding
chipseq_peak_9571	chr4	18349069	18349572	+	0	NA	Intergenic	Intergenic	495838	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_11008	chr5	129545585	129546142	+	0	NA	intron (NM_172276, intron 11 of 17)	intron (NM_172276, intron 11 of 17)	-38351	NM_011846	23948	Mm.42047	NM_011846		Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding
chipseq_peak_9463	chr4	6786744	6787518	+	0	NA	intron (NM_145711, intron 3 of 8)	intron (NM_145711, intron 3 of 8)	203592	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_403	chr1	56928365	56929639	+	0	NA	intron (NM_139146, intron 3 of 10)	intron (NM_139146, intron 3 of 10)	42332	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding
chipseq_peak_13648	chr9	63819069	63819639	+	0	NA	Intergenic	L1ME4c|LINE|L1	-61360	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding
chipseq_peak_11182	chr6	12749376	12750143	+	0	NA	promoter-TSS (NM_001164805)	promoter-TSS (NM_001164805)	-506	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
chipseq_peak_1311	chr10	17841851	17842413	+	0	NA	intron (NM_138628, intron 9 of 9)	intron (NM_138628, intron 9 of 9)	45913	NM_138628	378431	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding
chipseq_peak_7973	chr2	91237197	91238045	+	0	NA	promoter-TSS (NM_028119)	promoter-TSS (NM_028119)	475	NR_015464	606735	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA
chipseq_peak_5786	chr16	54744132	54744671	+	0	NA	Intergenic	Lx7|LINE|L1	538836	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
chipseq_peak_5289	chr15	69922766	69924316	+	0	NA	promoter-TSS (NR_045071)	promoter-TSS (NR_045071)	-692	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_1236	chr10	6980411	6981301	+	0	NA	promoter-TSS (NM_001170802)	promoter-TSS (NM_001170802)	-391	NM_001170802	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding
chipseq_peak_8295	chr2	143056279	143057388	+	0	NA	Intergenic	Intergenic	-6236	NM_021335	20639	Mm.1323	NM_021335		Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding
chipseq_peak_11122	chr5	149488627	149489519	+	0	NA	TTS (NR_045423)	TTS (NR_045423)	-39606	NM_029440	381693	Mm.136919	NM_029440	ENSMUSG00000029658	Wdr95	4930434E21Rik	WD40 repeat domain 95	protein-coding
chipseq_peak_4814	chr15	13455047	13456386	+	0	NA	Intergenic	Intergenic	-282041	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_11078	chr5	141506361	141506905	+	0	NA	intron (NM_177879, intron 1 of 44)	intron (NM_177879, intron 1 of 44)	265099	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick homolog 1 (chicken)	protein-coding
chipseq_peak_13157	chr8	104127052	104127904	+	0	NA	intron (NM_009868, intron 4 of 11)	MER57C2|LTR|ERV1	-21605	NR_131138	546096	Mm.252264	NR_131138		Gm29682	-	predicted gene, 29682	ncRNA
chipseq_peak_10171	chr4	126779184	126780037	+	0	NA	intron (NM_001035525, intron 2 of 23)	intron (NM_001035525, intron 2 of 23)	25840	NM_001035526	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|Kiaa0319l	expressed sequence AU040320	protein-coding
chipseq_peak_7552	chr2	37723561	37724968	+	0	NA	Intergenic	Intergenic	-51985	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding
chipseq_peak_6268	chr17	48326711	48327078	+	0	NA	TTS (NM_177083)	TTS (NM_177083)	10732	NM_177083	320148	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding
chipseq_peak_13927	chr9	113624990	113625515	+	0	NA	Intergenic	Intergenic	-38100	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_12179	chr7	64973618	64974266	+	0	NA	intron (NM_183087, intron 2 of 9)	L1M4|LINE|L1	-100902	NM_023239	66647	Mm.19944	NM_023239		Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|mage-g1	necdin-like 2	protein-coding
chipseq_peak_13918	chr9	113316376	113316739	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	270595	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_2737	chr12	25076054	25076348	+	0	NA	Intergenic	Intergenic	19891	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding
chipseq_peak_13746	chr9	89849420	89850943	+	0	NA	intron (NR_040735, intron 3 of 5)	L1ME4b|LINE|L1	23662	NR_040735	74700	Mm.159306	NR_040735	ENSMUSG00000098627	4930524O08Rik	-	RIKEN cDNA 4930524O08 gene	ncRNA
chipseq_peak_13376	chr9	27452798	27454769	+	0	NA	Intergenic	Intergenic	56571	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding
chipseq_peak_8638	chr3	41181268	41182218	+	0	NA	Intergenic	Intergenic	-98697	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding
chipseq_peak_7323	chr19	57543374	57544175	+	0	NA	Intergenic	Intergenic	34708	NR_040307	78073	Mm.12411	NR_040306		6720468P15Rik	-	RIKEN cDNA 6720468P15 gene	ncRNA
chipseq_peak_7760	chr2	58194417	58194734	+	0	NA	Intergenic	Intergenic	30601	NR_045895	100042926	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	OTTMUSG00000012675	predicted gene 13546	ncRNA
chipseq_peak_10018	chr4	87788808	87789125	+	0	NA	intron (NM_001286158, intron 4 of 5)	intron (NM_001286158, intron 4 of 5)	17357	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	protein-coding
chipseq_peak_6906	chr18	59865850	59866888	+	0	NA	Intergenic	Intergenic	286739	NR_105773	102465182		NR_105773	ENSMUSG00000098287	Mir6355	Gm27473|mmu-mir-6355	microRNA 6355	ncRNA
chipseq_peak_12245	chr7	76393004	76393408	+	0	NA	intron (NM_001199224, intron 6 of 22)	intron (NM_001199224, intron 6 of 22)	163319	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_10028	chr4	89129288	89129860	+	0	NA	Intergenic	Intergenic	-7796	NM_024433	66902	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding
chipseq_peak_1434	chr10	32161915	32162453	+	0	NA	intron (NM_001013411, intron 3 of 6)	intron (NM_001013411, intron 3 of 6)	-552459	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
chipseq_peak_2940	chr12	49483619	49485202	+	0	NA	Intergenic	Intergenic	-3548	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_4246	chr14	33913177	33913584	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-10207	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding
chipseq_peak_10067	chr4	97832280	97832883	+	0	NA	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	54955	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
chipseq_peak_4810	chr15	13278758	13279141	+	0	NA	Intergenic	L1ME3C|LINE|L1	-105274	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_10179	chr4	127817992	127818700	+	0	NA	Intergenic	B4A|SINE|B4	152495	NM_001134733	635169	Mm.346755	NM_001134733	ENSMUSG00000028813	CK137956	-	cDNA sequence CK137956	protein-coding
chipseq_peak_1194	chr1	192582856	192583318	+	0	NA	intron (NM_144881, intron 10 of 11)	L1ME3G|LINE|L1	188132	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding
chipseq_peak_724	chr1	115033348	115034303	+	0	NA	Intergenic	Intergenic	-651312	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_11889	chr6	118830660	118831160	+	0	NA	intron (NM_001159533, intron 3 of 46)	intron (NM_001159533, intron 3 of 46)	-49248	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA
chipseq_peak_2824	chr12	34165759	34166123	+	0	NA	intron (NM_001271386, intron 24 of 27)	intron (NM_001271386, intron 24 of 27)	208270	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding
chipseq_peak_13456	chr9	37636485	37637393	+	0	NA	intron (NM_011734, intron 7 of 9)	intron (NM_011734, intron 7 of 9)	20373	NM_025289	21376	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding
chipseq_peak_10502	chr5	52568824	52569135	+	0	NA	Intergenic	Intergenic	-2673	NM_001310604	246316	Mm.44721	NM_144945	ENSMUSG00000039252	Lgi2	mKIAA1916	leucine-rich repeat LGI family, member 2	protein-coding
chipseq_peak_6232	chr17	31766533	31767975	+	0	NA	Intergenic	Intergenic	88538	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding
chipseq_peak_10495	chr5	51432476	51433037	+	0	NA	Intergenic	Intergenic	121165	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding
chipseq_peak_12349	chr7	91871190	91872248	+	0	NA	intron (NM_011807, intron 4 of 22)	intron (NM_011807, intron 4 of 22)	-190675	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_9326	chr3	144394940	144395327	+	0	NA	Intergenic	Intergenic	175083	NM_011828	23908	Mm.12863	NM_011828		Hs2st1	AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding
chipseq_peak_6212	chr17	29268516	29268904	+	0	NA	promoter-TSS (NM_030561)	promoter-TSS (NM_030561)	-78	NM_030561	80748	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding
chipseq_peak_13651	chr9	63880423	63881493	+	0	NA	Intergenic	Intergenic	-122964	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding
chipseq_peak_10523	chr5	56250433	56251119	+	0	NA	Intergenic	Intergenic	1467143	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_7222	chr19	31950936	31951815	+	0	NA	Intergenic	Intergenic	82614	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf	APOBEC1 complementation factor	protein-coding
chipseq_peak_11798	chr6	105568380	105568690	+	0	NA	Intergenic	Intergenic	-75867	NR_040297	100503536	Mm.366960	NR_040297	ENSMUSG00000108237	Gm19757	-	predicted gene, 19757	ncRNA
chipseq_peak_5497	chr16	9583956	9584544	+	0	NA	intron (NM_008170, intron 11 of 11)	intron (NM_008170, intron 11 of 11)	408283	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding
chipseq_peak_8549	chr3	27658091	27658432	+	0	NA	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	52178	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding
chipseq_peak_11041	chr5	132472021	132473015	+	0	NA	intron (NM_177047, intron 1 of 18)	intron (NM_177047, intron 1 of 18)	69825	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
chipseq_peak_413	chr1	57510785	57511059	+	0	NA	Intergenic	Intergenic	-104248	NM_001302962	68736	Mm.288490	NM_001037742		Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding
chipseq_peak_7224	chr19	33380347	33380874	+	0	NA	intron (NM_001167818, intron 4 of 6)	intron (NM_001167818, intron 4 of 6)	11685	NM_001146342	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding
chipseq_peak_6518	chr17	90147467	90147879	+	0	NA	intron (NM_020252, intron 21 of 22)	intron (NM_020252, intron 21 of 22)	-713496	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_13636	chr9	61867476	61868186	+	0	NA	Intergenic	Intergenic	46679	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding
chipseq_peak_12802	chr8	44839453	44840349	+	0	NA	Intergenic	Intergenic	-110307	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chipseq_peak_8310	chr2	146051276	146051757	+	0	NA	Intergenic	Intergenic	116732	NM_175280	78774	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding
chipseq_peak_8452	chr3	10684405	10686124	+	0	NA	Intergenic	Intergenic	-245134	NM_001127191	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding
chipseq_peak_7077	chr19	12104552	12104966	+	0	NA	intron (NR_030566, intron 2 of 3)	Lx8|LINE|L1	4785	NM_146678	258673	Mm.271515	NM_146678	ENSMUSG00000067524	Olfr1428	MOR239-5	olfactory receptor 1428	protein-coding
chipseq_peak_8380	chr2	166432569	166434144	+	0	NA	Intergenic	Intergenic	-14095	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA
chipseq_peak_9914	chr4	76292725	76293081	+	0	NA	intron (NM_011211, intron 11 of 39)	intron (NM_011211, intron 11 of 39)	-1014617	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_11072	chr5	139138170	139138665	+	0	NA	Intergenic	Intergenic	-8031	NM_001253890	19085	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding
chipseq_peak_7106	chr19	19220589	19221748	+	0	NA	Intergenic	L2|LINE|L2	-109972	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
chipseq_peak_9832	chr4	58423234	58423733	+	0	NA	Intergenic	Intergenic	17615	NR_037278	100526502		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA
chipseq_peak_5261	chr15	66760001	66760383	+	0	NA	intron (NM_009375, intron 37 of 47)	intron (NM_009375, intron 37 of 47)	71637	NM_009192	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding
chipseq_peak_10899	chr5	111208536	111208862	+	0	NA	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-121998	NM_001301643	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding
chipseq_peak_4440	chr14	78066103	78066693	+	0	NA	Intergenic	Intergenic	22609	NM_177629	219170	Mm.320428	NM_177629	ENSMUSG00000045655	Fam216b	9330158N17|AU021034	family with sequence similarity 216, member B	protein-coding
chipseq_peak_2804	chr12	31992376	31993581	+	0	NA	intron (NM_011158, intron 3 of 10)	B2_Mm2|SINE|B2	-42443	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding
chipseq_peak_3871	chr13	90973592	90974477	+	0	NA	intron (NM_025770, intron 5 of 7)	intron (NM_025770, intron 5 of 7)	50912	NM_024175	66475	Mm.306302	NM_024175		Rps23	2410044J15Rik	ribosomal protein S23	protein-coding
chipseq_peak_7509	chr2	24213397	24213631	+	0	NA	Intergenic	Intergenic	-1903	NM_019450	54448	Mm.133095	NM_019450	ENSMUSG00000026984	Il1f6	Fil1|IL-1H1|IL1RP2|Il1f9|Il36a	interleukin 1 family, member 6	protein-coding
chipseq_peak_7467	chr2	14048433	14048773	+	0	NA	intron (NM_001012396, intron 1 of 5)	intron (NM_001012396, intron 1 of 5)	7432	NM_001012396	30963	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding
chipseq_peak_2809	chr12	32237807	32238904	+	0	NA	Intergenic	Intergenic	-29706	NM_001146200	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding
chipseq_peak_6014	chr16	76232427	76233143	+	0	NA	Intergenic	Intergenic	110172	NR_040575	78215	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA
chipseq_peak_10580	chr5	63199924	63200252	+	0	NA	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	386265	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding
chipseq_peak_9022	chr3	95264628	95265746	+	0	NA	intron (NM_173347, intron 3 of 7)	intron (NM_173347, intron 3 of 7)	-13994	NM_134253	171388	Mm.331209	NM_134253	ENSMUSG00000028115	Bnipl	1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding
chipseq_peak_163	chr1	30707262	30707637	+	0	NA	Intergenic	Lx9|LINE|L1	155807	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
chipseq_peak_856	chr1	140476881	140477375	+	0	NA	intron (NM_001081027, intron 13 of 27)	intron (NM_001081027, intron 13 of 27)	179274	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_6367	chr17	64739125	64739470	+	0	NA	intron (NM_008549, intron 19 of 21)	intron (NM_008549, intron 19 of 21)	-27814	NR_105051	101202683	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA
chipseq_peak_11662	chr6	92665194	92665742	+	0	NA	intron (NM_001081146, intron 2 of 8)	intron (NM_001081146, intron 2 of 8)	40716	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle homolog 2 (Drosophila)	protein-coding
chipseq_peak_6075	chr16	83697940	83698721	+	0	NA	Intergenic	Intergenic	-672813	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
chipseq_peak_1070	chr1	175674648	175674861	+	0	NA	intron (NM_010098, intron 1 of 3)	intron (NM_010098, intron 1 of 3)	13599	NM_021350	12663	Mm.440490	NM_021350	ENSMUSG00000078185	Chml	AI450814|E030003F13Rik|REP-2|Rep2	choroideremia-like	protein-coding
chipseq_peak_9060	chr3	106218266	106218753	+	0	NA	intron (NM_145126, intron 1 of 10)	intron (NM_145126, intron 1 of 10)	970	NM_145126	104183	Mm.425140	NM_145126	ENSMUSG00000063779	Chil4	Chi3l4|Ym2	chitinase-like 4	protein-coding
chipseq_peak_11178	chr6	12506826	12507253	+	0	NA	intron (NM_001164805, intron 2 of 26)	intron (NM_001164805, intron 2 of 26)	242214	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
chipseq_peak_333	chr1	52571741	52572211	+	0	NA	Intergenic	Intergenic	-58729	NR_024590	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Tmem194b	5330401P04Rik|9830163O08|Nemp2	transmembrane protein 194B	protein-coding
chipseq_peak_855	chr1	140421537	140422385	+	0	NA	intron (NM_001081027, intron 8 of 27)	intron (NM_001081027, intron 8 of 27)	175704	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding
chipseq_peak_14095	chrX	145063678	145064009	+	0	NA	intron (NM_001033795, intron 2 of 6)	L2c|LINE|L2	24499	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA
chipseq_peak_2383	chr11	65907832	65908457	+	0	NA	intron (NM_001099633, intron 53 of 68)	intron (NM_001099633, intron 53 of 68)	100969	NM_001302375	52712	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding
chipseq_peak_6863	chr18	55142034	55142527	+	0	NA	Intergenic	Intergenic	-152100	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_2143	chr11	14077091	14078503	+	0	NA	intron (NR_131011, intron 2 of 3)	Lx9|LINE|L1	101244	NR_131011	75280	Mm.108492	NR_131011		4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA
chipseq_peak_1854	chr10	99262897	99263342	+	0	NA	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-112	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chipseq_peak_12784	chr8	42500301	42501354	+	0	NA	Intergenic	Intergenic	640659	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding
chipseq_peak_4973	chr15	32656088	32656835	+	0	NA	intron (NM_009154, intron 16 of 22)	intron (NM_009154, intron 16 of 22)	-264262	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding
chipseq_peak_4919	chr15	25019147	25020126	+	0	NA	Intergenic	Intergenic	394128	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
chipseq_peak_11422	chr6	41775383	41778468	+	0	NA	Intergenic	L1ME2|LINE|L1	-4628	NM_146576	258569	Mm.377571	NM_146576	ENSMUSG00000045479	Olfr459	MOR120-1	olfactory receptor 459	protein-coding
chipseq_peak_1268	chr10	11061459	11062229	+	0	NA	intron (NM_016976, intron 2 of 8)	intron (NM_016976, intron 2 of 8)	20487	NM_001114333	14816	Mm.391904	NM_016976	ENSMUSG00000019828	Grm1	4930455H15Rik|ENSMUSG00000075319|Gm10828|Gprc1a|mGluR1|nmf373|rcw|wobl	glutamate receptor, metabotropic 1	protein-coding
chipseq_peak_9145	chr3	118324992	118325584	+	0	NA	Intergenic	Intergenic	-108569	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA
chipseq_peak_4256	chr14	37372036	37372779	+	0	NA	Intergenic	L1MA4A|LINE|L1	-237085	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
chipseq_peak_11473	chr6	49556116	49556416	+	0	NA	Intergenic	Intergenic	160662	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding
chipseq_peak_6811	chr18	50317794	50318787	+	0	NA	Intergenic	Intergenic	39921	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding
chipseq_peak_6134	chr16	97060298	97061724	+	0	NA	intron (NM_031174, intron 1 of 32)	B1_Mur1|SINE|Alu	109724	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding
chipseq_peak_2156	chr11	16343898	16345164	+	0	NA	Intergenic	Intergenic	86807	NM_001290539	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding
chipseq_peak_13517	chr9	48045580	48046351	+	0	NA	Intergenic	L1MEi|LINE|L1	-227757	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA
chipseq_peak_2968	chr12	50851221	50851683	+	0	NA	Intergenic	Intergenic	-153704	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
chipseq_peak_1553	chr10	50866996	50868560	+	0	NA	Intergenic	Intergenic	-27873	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding
chipseq_peak_12934	chr8	60867530	60868014	+	0	NA	Intergenic	Intergenic	-22679	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	2700029M09Rik	C230006B22Rik	RIKEN cDNA 2700029M09 gene	protein-coding
chipseq_peak_1853	chr10	99008045	99008558	+	0	NA	intron (NM_026482, intron 12 of 20)	intron (NM_026482, intron 12 of 20)	93149	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding
chipseq_peak_9881	chr4	71610913	71611314	+	0	NA	Intergenic	L1MC5a|LINE|L1	589780	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_11979	chr6	143473783	143474066	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	177364	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA
chipseq_peak_8135	chr2	120414183	120415340	+	0	NA	intron (NM_172672, intron 3 of 23)	intron (NM_172672, intron 3 of 23)	-10645	NM_001110497	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding
chipseq_peak_6662	chr18	23650077	23650458	+	0	NA	intron (NM_207650, intron 18 of 20)	intron (NM_207650, intron 18 of 20)	102038	NR_126066	100502834	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	OTTMUSG00000028454	predicted gene 15972	ncRNA
chipseq_peak_2058	chr10	123426863	123427363	+	0	NA	intron (NR_045514, intron 1 of 5)	intron (NR_045514, intron 1 of 5)	163037	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_8056	chr2	107117576	107118029	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	-58151	NM_008045	14308	Mm.249525	NM_008045	ENSMUSG00000027120	Fshb	FSH|FSH-B|FSH-beta|Fshbeta	follicle stimulating hormone beta	protein-coding
chipseq_peak_7880	chr2	70961184	70961711	+	0	NA	Intergenic	Intergenic	56927	NM_001110512	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding
chipseq_peak_10499	chr5	52242247	52243372	+	0	NA	Intergenic	Intergenic	-26376	NR_040717	414111	Mm.417638	NR_040717	ENSMUSG00000106464	C130083M11Rik	-	RIKEN cDNA C130083M11 gene	ncRNA
chipseq_peak_14116	chrX	159157001	159157377	+	0	NA	Intergenic	Intergenic	-98593	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding
chipseq_peak_2823	chr12	34052111	34053107	+	0	NA	intron (NM_001271386, intron 27 of 27)	intron (NM_001271386, intron 27 of 27)	94938	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding
chipseq_peak_12540	chr7	132253589	132254009	+	0	NA	intron (NM_029935, intron 5 of 7)	intron (NM_029935, intron 5 of 7)	-61865	NR_028578	100043682	Mm.482794	NR_028578		Gm10584	ENSMUSG00000073814	predicted gene 10584	ncRNA
chipseq_peak_10691	chr5	77805310	77807248	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	340791	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
chipseq_peak_2268	chr11	38088448	38089316	+	0	NA	Intergenic	Intergenic	429893	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	OTTMUSG00000005422	predicted gene 12128	ncRNA
chipseq_peak_8225	chr2	138085289	138085767	+	0	NA	Intergenic	Intergenic	-171056	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
chipseq_peak_6645	chr18	22529834	22530682	+	0	NA	TTS (NM_001167777)	TTS (NM_001167777)	185169	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3 (Drosophila)	protein-coding
chipseq_peak_10982	chr5	125807956	125808309	+	0	NA	Intergenic	Intergenic	275714	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding
chipseq_peak_7404	chr2	7547605	7550249	+	0	NA	Intergenic	Intergenic	-152729	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_6275	chr17	49703593	49705179	+	0	NA	intron (NM_177052, intron 6 of 22)	intron (NM_177052, intron 6 of 22)	89214	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding
chipseq_peak_2235	chr11	29924343	29924654	+	0	NA	intron (NM_146016, intron 2 of 41)	intron (NM_146016, intron 2 of 41)	-98830	NM_176829	216622	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding
chipseq_peak_542	chr1	77769047	77769370	+	0	NA	Intergenic	Intergenic	-254120	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding
chipseq_peak_2795	chr12	30168453	30168828	+	0	NA	Intergenic	Intergenic	-36016	NM_009417	22018	Mm.4991	NM_009417	ENSMUSG00000020673	Tpo	-	thyroid peroxidase	protein-coding
chipseq_peak_9336	chr3	146345328	146346112	+	0	NA	Intergenic	Intergenic	33224	NR_033542	100038607	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	ENSMUSG00000074175	predicted gene 10636	ncRNA
chipseq_peak_11121	chr5	149451112	149451623	+	0	NA	intron (NM_001310764, intron 2 of 6)	Charlie2a|DNA|hAT-Charlie	11707	NM_001310764	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding
chipseq_peak_14150	chrX	169708910	169709278	+	0	NA	intron (NM_010797, intron 1 of 9)	intron (NM_010797, intron 1 of 9)	23895	NM_001290512	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding
chipseq_peak_46	chr1	15007751	15008062	+	0	NA	Intergenic	Intergenic	-89044	NM_177781	277328	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding
chipseq_peak_2429	chr11	77618925	77619231	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-11263	NM_144825	216965	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding
chipseq_peak_3282	chr12	94015790	94016325	+	0	NA	Intergenic	Intergenic	88719	NR_106175	102465890		NR_106175	ENSMUSG00000098931	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA
chipseq_peak_5587	chr16	31499668	31500235	+	0	NA	Intergenic	Intergenic	71198	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding
chipseq_peak_9489	chr4	9610074	9610342	+	0	NA	intron (NM_023066, intron 4 of 23)	intron (NM_023066, intron 4 of 23)	33509	NM_001177853	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding
chipseq_peak_13791	chr9	97534023	97534620	+	0	NA	intron (NM_022319, intron 6 of 17)	intron (NM_022319, intron 6 of 17)	-164363	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
chipseq_peak_1866	chr10	99610632	99611124	+	0	NA	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	1707	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA
chipseq_peak_9799	chr4	52437557	52439153	+	0	NA	promoter-TSS (NM_001301412)	promoter-TSS (NM_001301412)	609	NR_045175	72648	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA
chipseq_peak_6570	chr18	8446968	8447559	+	0	NA	Intergenic	Intergenic	578066	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chipseq_peak_1386	chr10	27384348	27385213	+	0	NA	intron (NM_008481, intron 4 of 63)	intron (NM_008481, intron 4 of 63)	-5086	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_12257	chr7	77993738	77994195	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	583872	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
chipseq_peak_786	chr1	129033723	129034303	+	0	NA	Intergenic	Intergenic	-239291	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding
chipseq_peak_1116	chr1	177458898	177460201	+	0	NA	Intergenic	(TTTTC)n|Simple_repeat|Simple_repeat	13728	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_13614	chr9	60329883	60330292	+	0	NA	intron (NM_001040426, intron 6 of 17)	intron (NM_001040426, intron 6 of 17)	180948	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding
chipseq_peak_9929	chr4	77586223	77588393	+	0	NA	intron (NM_011211, intron 3 of 39)	AT_rich|Low_complexity|Low_complexity	624587	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_10219	chr4	149989393	149990106	+	0	NA	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	13487	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding
chipseq_peak_5439	chr15	97506979	97508205	+	0	NA	Intergenic	Intergenic	198230	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding
chipseq_peak_9922	chr4	77041075	77041822	+	0	NA	intron (NM_011211, intron 7 of 39)	intron (NM_011211, intron 7 of 39)	1170447	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_13008	chr8	76705689	76706485	+	0	NA	Intergenic	Intergenic	194086	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
chipseq_peak_9189	chr3	123298002	123298765	+	0	NA	intron (NM_027135, intron 6 of 22)	intron (NM_027135, intron 6 of 22)	30887	NM_027135	69608	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding
chipseq_peak_4402	chr14	73997744	73998483	+	0	NA	Intergenic	Intergenic	-357414	NR_046059	74425	Mm.399498	NR_046059		4933402J15Rik	-	RIKEN cDNA 4933402J15 gene	ncRNA
chipseq_peak_9737	chr4	37974852	37975244	+	0	NA	Intergenic	Intergenic	-1023304	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_12947	chr8	64655195	64655465	+	0	NA	intron (NM_013494, intron 1 of 8)	intron (NM_013494, intron 1 of 8)	37710	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding
chipseq_peak_7888	chr2	73572624	73573537	+	0	NA	intron (NM_007389, intron 4 of 8)	intron (NM_007389, intron 4 of 8)	7258	NM_007389	11435	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding
chipseq_peak_1644	chr10	66925866	66926230	+	0	NA	Intergenic	Intergenic	-79027	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA
chipseq_peak_9677	chr4	31318694	31319921	+	0	NA	Intergenic	Intergenic	-644800	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_5325	chr15	76145537	76146514	+	0	NA	Intergenic	B3|SINE|B2	-19469	NM_001142968	271278	Mm.205253	NM_198172	ENSMUSG00000044361	BC024139	6230424I18Rik	cDNA sequence BC024139	protein-coding
chipseq_peak_68	chr1	18667294	18668696	+	0	NA	Intergenic	Intergenic	-402857	NM_001040027	654464	Mm.99530	NM_001040027		Gm15386	BD-17|BD-41|Defb17|Defb41|OTTMUSG00000020946|OTTMUSG00000020948|mBD-41	predicted gene 15386	protein-coding
chipseq_peak_7690	chr2	50087880	50088100	+	0	NA	intron (NM_177139, intron 1 of 4)	intron (NM_177139, intron 1 of 4)	21561	NM_177139	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding
chipseq_peak_11375	chr6	36641223	36642020	+	0	NA	Intergenic	Intergenic	169740	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_10220	chr4	150325197	150325734	+	0	NA	intron (NM_001085492, intron 1 of 22)	L1MA6|LINE|L1	43549	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding
chipseq_peak_4330	chr14	60653058	60653858	+	0	NA	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	18753	NM_001033272	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding
chipseq_peak_2358	chr11	54194743	54195152	+	0	NA	intron (NR_045506, intron 2 of 2)	MER2|DNA|TcMar-Tigger	18341	NR_045506	71056	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA
chipseq_peak_11485	chr6	50318185	50319087	+	0	NA	intron (NM_001163645, intron 15 of 21)	B1F|SINE|Alu	-56867	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding
chipseq_peak_8078	chr2	109943493	109943752	+	0	NA	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	25975	NM_172671	107515	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding
chipseq_peak_11720	chr6	99063837	99064449	+	0	NA	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	-35845	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
chipseq_peak_3090	chr12	67089964	67091191	+	0	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	131972	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_1599	chr10	57743546	57744038	+	0	NA	Intergenic	Intergenic	-41131	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding
chipseq_peak_8543	chr3	26750547	26752069	+	0	NA	intron (NM_029150, intron 3 of 10)	Charlie1a|DNA|hAT-Charlie	113677	NM_029150	70862	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding
chipseq_peak_8286	chr2	142559424	142561362	+	0	NA	Intergenic	Intergenic	341071	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_13841	chr9	104776216	104777028	+	0	NA	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	206834	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding
chipseq_peak_7965	chr2	83623986	83624296	+	0	NA	Intergenic	Intergenic	-20437	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
chipseq_peak_4663	chr14	111888765	111889413	+	0	NA	Intergenic	Intergenic	-132341	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
chipseq_peak_7350	chr2	3930632	3931766	+	0	NA	Intergenic	Intergenic	209942	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA
chipseq_peak_5214	chr15	62954813	62955439	+	0	NA	Intergenic	Intergenic	524482	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA
chipseq_peak_6755	chr18	39437622	39437924	+	0	NA	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	49472	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding
chipseq_peak_10548	chr5	58963782	58964170	+	0	NA	Intergenic	Intergenic	-510978	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA
chipseq_peak_8069	chr2	108038630	108039030	+	0	NA	Intergenic	Intergenic	748241	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_6203	chr17	16089157	16090196	+	0	NA	Intergenic	Intergenic	-263090	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding
chipseq_peak_5507	chr16	12094617	12095208	+	0	NA	intron (NM_001174086, intron 2 of 3)	intron (NM_001174086, intron 2 of 3)	110799	NM_001174086	72555	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding
chipseq_peak_4410	chr14	74743627	74744160	+	0	NA	intron (NM_001285423, intron 6 of 8)	intron (NM_001285423, intron 6 of 8)	11596	NM_001285423	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding
chipseq_peak_1820	chr10	95641622	95642106	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-77697	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding
chipseq_peak_5550	chr16	25585117	25585523	+	0	NA	Intergenic	Intergenic	-98445	NM_001127261	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding
chipseq_peak_3569	chr13	43666022	43667107	+	0	NA	intron (NM_183204, intron 1 of 1)	intron (NM_183204, intron 1 of 1)	-50227	NR_046022	622552	Mm.375036	NR_046022		Gm20751	-	predicted gene, 20751	ncRNA
chipseq_peak_8573	chr3	29670780	29671418	+	0	NA	intron (NM_001167748, intron 10 of 12)	intron (NM_001167748, intron 10 of 12)	34355	NR_105796	102466637		NR_105796	ENSMUSG00000098315	Mir21b	Gm27951|mmu-mir-21b	microRNA 21b	ncRNA
chipseq_peak_9083	chr3	111488218	111489093	+	0	NA	Intergenic	Lx2A|LINE|L1	-393248	NR_045362	625585	Mm.389497	NR_045362	ENSMUSG00000104543	Gm6602	-	predicted gene 6602	ncRNA
chipseq_peak_8623	chr3	39848798	39849478	+	0	NA	Intergenic	Intergenic	673774	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_5982	chr16	74581519	74585457	+	0	NA	Intergenic	Intergenic	-172576	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_13722	chr9	83686044	83687081	+	0	NA	Intergenic	Intergenic	-4913	NR_046066	100039222	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA
chipseq_peak_2655	chr12	6860984	6861394	+	0	NA	Intergenic	Intergenic	519141	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_11238	chr6	17696257	17696614	+	0	NA	intron (NM_001289625, intron 1 of 15)	intron (NM_001289625, intron 1 of 15)	2441	NM_001289625	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
chipseq_peak_2161	chr11	17591666	17592145	+	0	NA	Intergenic	Charlie15b|DNA|hAT-Charlie	334287	NM_020558	57316	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding
chipseq_peak_10897	chr5	111140986	111142056	+	0	NA	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	137377	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_3377	chr13	4666298	4667289	+	0	NA	Intergenic	Intergenic	-57629	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding
chipseq_peak_10859	chr5	103141150	103141611	+	0	NA	intron (NM_001310683, intron 2 of 13)	Tigger10|DNA|TcMar-Tigger	69954	NM_009158	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
chipseq_peak_13455	chr9	37632483	37632750	+	0	NA	intron (NM_011734, intron 5 of 9)	L1M5|LINE|L1	18769	NM_011734	22619	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding
chipseq_peak_5829	chr16	62940693	62941021	+	0	NA	Intergenic	Intergenic	86550	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
chipseq_peak_12393	chr7	96783165	96783753	+	0	NA	intron (NM_001310760, intron 14 of 32)	intron (NM_001310760, intron 14 of 32)	18090	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA
chipseq_peak_12763	chr8	39504357	39505205	+	0	NA	intron (NR_035426, intron 4 of 5)	intron (NR_035426, intron 4 of 5)	137897	NM_001113326	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding
chipseq_peak_8331	chr2	156241641	156242135	+	0	NA	intron (NM_172674, intron 2 of 17)	intron (NM_172674, intron 2 of 17)	45241	NM_172674	228829	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding
chipseq_peak_8079	chr2	109960058	109960901	+	0	NA	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	42832	NM_172671	107515	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding
chipseq_peak_1140	chr1	180520262	180520732	+	0	NA	Intergenic	Intergenic	-36993	NM_001081227	381310	Mm.44791	NM_001081227	ENSMUSG00000053963	6330403A02Rik	ENSMUSG00000056615|Gm10001|R75555	RIKEN cDNA 6330403A02 gene	protein-coding
chipseq_peak_7824	chr2	63326241	63327178	+	0	NA	Intergenic	Intergenic	-142422	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
chipseq_peak_301	chr1	46725505	46726378	+	0	NA	intron (NM_001310335, intron 48 of 64)	intron (NM_001310335, intron 48 of 64)	127568	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding
chipseq_peak_9878	chr4	71445608	71446959	+	0	NA	Intergenic	L1M4|LINE|L1	754610	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_6880	chr18	56014719	56015718	+	0	NA	Intergenic	Intergenic	-416914	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
chipseq_peak_5276	chr15	68307248	68308091	+	0	NA	Intergenic	Intergenic	29841	NR_029534	387226		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA
chipseq_peak_8197	chr2	134894855	134895197	+	0	NA	intron (NM_019677, intron 2 of 32)	intron (NM_019677, intron 2 of 32)	108862	NM_019677	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding
chipseq_peak_2535	chr11	101657831	101659103	+	0	NA	Intergenic	Intergenic	-7074	NM_025404	80981	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding
chipseq_peak_1398	chr10	28231397	28231673	+	0	NA	intron (NM_008983, intron 2 of 31)	intron (NM_008983, intron 2 of 31)	156715	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding
chipseq_peak_8966	chr3	82137985	82139338	+	0	NA	intron (NM_021896, intron 1 of 8)	intron (NM_021896, intron 1 of 8)	7216	NM_021896	60596	Mm.143831	NM_021896	ENSMUSG00000033910	Gucy1a3	1200016O07Rik|sGC-alpha1	guanylate cyclase 1, soluble, alpha 3	protein-coding
chipseq_peak_11397	chr6	37936903	37937497	+	0	NA	intron (NM_001272076, intron 7 of 18)	intron (NM_001272076, intron 7 of 18)	36713	NM_001272076	21848	Mm.41063	NM_145076		Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding
chipseq_peak_5860	chr16	64332342	64334238	+	0	NA	Intergenic	Intergenic	145844	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding
chipseq_peak_2138	chr11	12741404	12742706	+	0	NA	Intergenic	Intergenic	-277095	NM_001282993	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
chipseq_peak_1368	chr10	26957359	26957855	+	0	NA	Intergenic	L1MEd|LINE|L1	185095	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
chipseq_peak_13299	chr9	9959013	9959304	+	0	NA	intron (NM_001170787, intron 13 of 24)	intron (NM_001170787, intron 13 of 24)	64727	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_6686	chr18	27581962	27583067	+	0	NA	Intergenic	Intergenic	-977650	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA
chipseq_peak_2372	chr11	60913910	60914255	+	0	NA	promoter-TSS (NM_025294)	promoter-TSS (NM_025294)	-290	NM_025294	24083	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
chipseq_peak_6266	chr17	46496475	46496748	+	0	NA	promoter-TSS (NM_207161)	promoter-TSS (NM_207161)	-178	NM_207161	381101	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding
chipseq_peak_11525	chr6	55754095	55754835	+	0	NA	Intergenic	Intergenic	69894	NR_046071	100041339	Mm.403680	NR_046071	ENSMUSG00000108063	Gm3279	-	predicted gene 3279	ncRNA
chipseq_peak_12200	chr7	71754530	71755277	+	0	NA	Intergenic	Intergenic	-154792	NR_130995	78156	Mm.243818	NR_130995		4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA
chipseq_peak_10068	chr4	97880464	97880993	+	0	NA	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	103102	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
chipseq_peak_10321	chr5	16314233	16314778	+	0	NA	intron (NM_009784, intron 14 of 37)	intron (NM_009784, intron 14 of 37)	-238990	NM_010427	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
chipseq_peak_0	chr1	3119501	3121684	+	0	NA	Intergenic	Intergenic	550906	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X Kell blood group precursor related family member 4	protein-coding
chipseq_peak_781	chr1	128033147	128033952	+	0	NA	intron (NM_001285945, intron 5 of 20)	PB1D9|SINE|Alu	68922	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding
chipseq_peak_5551	chr16	25588015	25588418	+	0	NA	Intergenic	Intergenic	-95549	NM_001127261	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding
chipseq_peak_4555	chr14	93889923	93891716	+	0	NA	promoter-TSS (NM_001271799)	promoter-TSS (NM_001271799)	-150	NM_001271798	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_10764	chr5	85571009	85572575	+	0	NA	Intergenic	Intergenic	493791	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_13473	chr9	41261692	41262511	+	0	NA	Intergenic	Intergenic	55946	NR_040392	78500	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA
chipseq_peak_8936	chr3	80540090	80542171	+	0	NA	Intergenic	Intergenic	261661	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_8756	chr3	55889171	55889786	+	0	NA	intron (NM_030595, intron 35 of 57)	intron (NM_030595, intron 35 of 57)	42373	NR_033592	71182	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo
chipseq_peak_13786	chr9	97317406	97318027	+	0	NA	Intergenic	Intergenic	52242	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
chipseq_peak_11617	chr6	78277945	78278384	+	0	NA	Intergenic	Intergenic	-92721	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding
chipseq_peak_2365	chr11	57540703	57541069	+	0	NA	Intergenic	Intergenic	22221	NM_180599	216760	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding
chipseq_peak_1187	chr1	189663123	189664975	+	0	NA	intron (NM_001081363, intron 10 of 17)	intron (NM_001081363, intron 10 of 17)	24037	NM_001081363	108000	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding
chipseq_peak_7432	chr2	8379427	8381481	+	0	NA	Intergenic	Intergenic	-809061	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_3452	chr13	16762250	16764211	+	0	NA	Intergenic	Intergenic	748755	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_8253	chr2	140615485	140617485	+	0	NA	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	54991	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_8921	chr3	79896929	79898260	+	0	NA	intron (NM_133187, intron 1 of 3)	intron (NM_133187, intron 1 of 3)	11664	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_11467	chr6	47778609	47779113	+	0	NA	Intergenic	Intergenic	24791	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA
chipseq_peak_9412	chr3	155381693	155382468	+	0	NA	Intergenic	Intergenic	288646	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding
chipseq_peak_7969	chr2	84893353	84893932	+	0	NA	Intergenic	L1ME4c|LINE|L1	-6950	NM_199223	269295	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding
chipseq_peak_11832	chr6	109158528	109158957	+	0	NA	Intergenic	Intergenic	330101	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
chipseq_peak_12922	chr8	59474245	59474606	+	0	NA	Intergenic	Intergenic	-351224	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
chipseq_peak_12254	chr7	77824309	77824655	+	0	NA	Intergenic	Intergenic	753356	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
chipseq_peak_6625	chr18	19910477	19910875	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	91421	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_3660	chr13	58747579	58748015	+	0	NA	intron (NR_045469, intron 1 of 2)	intron (NR_045469, intron 1 of 2)	14514	NR_045469	67585	Mm.84751	NR_045469		4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA
chipseq_peak_2028	chr10	118643701	118644060	+	0	NA	Intergenic	Intergenic	-87355	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA
chipseq_peak_10993	chr5	126799859	126800817	+	0	NA	Intergenic	Intergenic	-230451	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA
chipseq_peak_4181	chr14	20970237	20971601	+	0	NA	intron (NM_009502, intron 2 of 20)	B1_Mur2|SINE|Alu	41486	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding
chipseq_peak_13436	chr9	33206760	33207719	+	0	NA	Intergenic	Charlie24|DNA|hAT-Charlie	-278273	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA
chipseq_peak_2586	chr11	110709826	110711792	+	0	NA	Intergenic	Intergenic	-257224	NM_010604	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
chipseq_peak_4743	chr14	120835753	120836559	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-75038	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding
chipseq_peak_4979	chr15	34081814	34082749	+	0	NA	promoter-TSS (NM_026002)	promoter-TSS (NM_026002)	-438	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding
chipseq_peak_722	chr1	114729077	114729558	+	0	NA	Intergenic	Intergenic	-955820	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_13589	chr9	57861988	57862702	+	0	NA	Intergenic	Intergenic	-28111	NM_019689	56380	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding
chipseq_peak_9769	chr4	47623346	47623729	+	0	NA	Intergenic	Intergenic	148876	NM_024171	66212	Mm.20188	NM_024171	ENSMUSG00000053317	Sec61b	1190006C12Rik|AI326121|AW122942	Sec61 beta subunit	protein-coding
chipseq_peak_11922	chr6	136241404	136242036	+	0	NA	Intergenic	Intergenic	-68209	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding
chipseq_peak_4561	chr14	94943067	94943393	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-938036	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding
chipseq_peak_9925	chr4	77379529	77379875	+	0	NA	intron (NM_011211, intron 4 of 39)	(TTTA)n|Simple_repeat|Simple_repeat	832193	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_9005	chr3	86037863	86038223	+	0	NA	Intergenic	Intergenic	-35552	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding
chipseq_peak_12950	chr8	64937751	64938244	+	0	NA	Intergenic	Intergenic	-9188	NM_001163747	73067	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding
chipseq_peak_8091	chr2	113009444	113009764	+	0	NA	intron (NM_177652, intron 2 of 103)	intron (NM_177652, intron 2 of 103)	20727	NM_177652	20192	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding
chipseq_peak_3828	chr13	84570869	84572053	+	0	NA	Intergenic	Intergenic	349165	NR_029419	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
chipseq_peak_2207	chr11	25872468	25873243	+	0	NA	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-329385	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
chipseq_peak_4815	chr15	13550564	13551007	+	0	NA	Intergenic	Intergenic	-377110	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_4134	chr14	9646251	9646980	+	0	NA	intron (NM_001308286, intron 5 of 6)	intron (NM_001308286, intron 5 of 6)	-237480	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo
chipseq_peak_14026	chrX	68287386	68287800	+	0	NA	Intergenic	Intergenic	-277414	NR_030575	100124449		NR_030575	ENSMUSG00000106233	Mir509	Mirn509|mmu-mir-509	microRNA 509	ncRNA
chipseq_peak_12310	chr7	90693908	90694503	+	0	NA	Intergenic	Intergenic	-218210	NM_026734	68472	Mm.289791	NM_026734		Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding
chipseq_peak_4773	chr15	7322810	7323203	+	0	NA	intron (NM_178748, intron 1 of 21)	L1MC1|LINE|L1	75384	NM_178748	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding
chipseq_peak_4896	chr15	22624909	22625563	+	0	NA	Intergenic	Intergenic	89748	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding
chipseq_peak_5618	chr16	37684490	37685237	+	0	NA	Intergenic	Intergenic	-30495	NM_026610	68194	Mm.379154	NM_026610		Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding
chipseq_peak_12611	chr8	8650039	8650532	+	0	NA	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	10488	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_3586	chr13	45661452	45661991	+	0	NA	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	154277	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding
chipseq_peak_10163	chr4	124575271	124576180	+	0	NA	TTS (NR_045819)	TTS (NR_045819)	6546	NR_045819	108809	Mm.250313	NR_045819		4933407E24Rik	-	RIKEN cDNA 4933407E24 gene	ncRNA
chipseq_peak_963	chr1	159541406	159541809	+	0	NA	intron (NM_022312, intron 1 of 22)	intron (NM_022312, intron 1 of 22)	17838	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding
chipseq_peak_8224	chr2	138033551	138034670	+	0	NA	Intergenic	Intergenic	-222474	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
chipseq_peak_12718	chr8	32349043	32349463	+	0	NA	Intergenic	Intergenic	197358	NR_046039	666589	Mm.367675	NR_046039		Gm8179	EG666589	predicted gene 8179	ncRNA
chipseq_peak_187	chr1	32553891	32554374	+	0	NA	intron (NM_133235, intron 6 of 8)	intron (NM_133235, intron 6 of 8)	-6839	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding
chipseq_peak_5389	chr15	92482168	92482483	+	0	NA	intron (NM_001164593, intron 3 of 9)	intron (NM_001164593, intron 3 of 9)	85515	NM_001164593	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
chipseq_peak_7981	chr2	92848907	92849427	+	0	NA	Intergenic	Intergenic	-65934	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding
chipseq_peak_1974	chr10	110344893	110347274	+	0	NA	Intergenic	URR1A|DNA|hAT-Charlie	-254567	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
chipseq_peak_8375	chr2	165356170	165356778	+	0	NA	intron (NM_001005425, intron 4 of 4)	(CTA)n|Simple_repeat|Simple_repeat	5645	NM_001005425	381405	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding
chipseq_peak_13192	chr8	112175964	112176508	+	0	NA	Intergenic	Intergenic	164877	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding
chipseq_peak_4509	chr14	88565146	88566499	+	0	NA	Intergenic	Intergenic	-94426	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_12876	chr8	54856360	54856955	+	0	NA	intron (NM_001253754, intron 1 of 6)	intron (NM_001253754, intron 1 of 6)	77223	NM_001253754	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_9532	chr4	14075157	14076573	+	0	NA	Intergenic	Intergenic	215444	NR_131155	100040030	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA
chipseq_peak_3346	chr12	109511416	109511870	+	0	NA	Intergenic	Intergenic	-29353	NR_027651	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA
chipseq_peak_10635	chr5	71093770	71095047	+	0	NA	intron (NM_008066, intron 2 of 9)	intron (NM_008066, intron 2 of 9)	1441	NM_008066	14395	Mm.5304	NM_008066		Gabra2	C630048P16Rik|Gabra-2	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2	protein-coding
chipseq_peak_12374	chr7	94359461	94360084	+	0	NA	Intergenic	Intergenic	1279893	NM_021427	58238	Mm.113787	NM_021427		Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding
chipseq_peak_2097	chr10	126634715	126635106	+	0	NA	Intergenic	Intergenic	75481	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA
chipseq_peak_8209	chr2	136149140	136149856	+	0	NA	intron (NM_172858, intron 3 of 9)	intron (NM_172858, intron 3 of 9)	91571	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding
chipseq_peak_12593	chr8	7219148	7219926	+	0	NA	Intergenic	Intergenic	1441236	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_11896	chr6	119864668	119865055	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	16668	NR_030776	67289	Mm.418299	NR_030776		3110021A11Rik	-	RIKEN cDNA 3110021A11 gene	ncRNA
chipseq_peak_12572	chr7	142835379	142835772	+	0	NA	Intergenic	MYSERV6-int|LTR|ERVK	64391	NM_009377	21823	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding
chipseq_peak_3238	chr12	84819280	84819841	+	0	NA	intron (NM_013589, intron 8 of 34)	Charlie7|DNA|hAT-Charlie	46290	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2 homolog (S. cerevisiae)	protein-coding
chipseq_peak_6815	chr18	51081412	51084170	+	0	NA	Intergenic	Intergenic	-35107	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding
chipseq_peak_8389	chr2	170549991	170550846	+	0	NA	Intergenic	Intergenic	-38491	NR_040367	100502946	Mm.421284	NR_040367	ENSMUSG00000085495	Gm16796	-	predicted gene, 16796	ncRNA
chipseq_peak_9986	chr4	83129377	83130113	+	0	NA	Intergenic	L1ME1|LINE|L1	-77578	NM_001198811	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding
chipseq_peak_5761	chr16	52134358	52134964	+	0	NA	intron (NM_001033238, intron 5 of 17)	intron (NM_001033238, intron 5 of 17)	103112	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
chipseq_peak_8017	chr2	98712439	98713882	+	0	NA	Intergenic	Intergenic	1245503	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_12440	chr7	112100599	112101607	+	0	NA	intron (NM_133758, intron 20 of 27)	intron (NM_133758, intron 20 of 27)	57954	NM_015814	50781	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148	dickkopf homolog 3 (Xenopus laevis)	protein-coding
chipseq_peak_11633	chr6	81471564	81471965	+	0	NA	Intergenic	Intergenic	423899	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA
chipseq_peak_8164	chr2	129564305	129564646	+	0	NA	Intergenic	Intergenic	-27873	NM_177653	228592	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding
chipseq_peak_12454	chr7	114041518	114042378	+	0	NA	3' UTR (NM_145584, exon 16 of 16)	3' UTR (NM_145584, exon 16 of 16)	75833	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene homolog 2	protein-coding
chipseq_peak_140	chr1	27465190	27465524	+	0	NA	Intergenic	Intergenic	-777897	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding
chipseq_peak_10051	chr4	94376093	94376697	+	0	NA	Intergenic	Intergenic	180401	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
chipseq_peak_5165	chr15	57946155	57946513	+	0	NA	intron (NM_001167679, intron 10 of 17)	intron (NM_001167679, intron 10 of 17)	34135	NM_001081396	210544	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding
chipseq_peak_5709	chr16	46831606	46832017	+	0	NA	Intergenic	Intergenic	-334844	NM_021496	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
chipseq_peak_3719	chr13	77130113	77132229	+	0	NA	intron (NM_134071, intron 1 of 20)	intron (NM_134071, intron 1 of 20)	4297	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding
chipseq_peak_1337	chr10	21701596	21702797	+	0	NA	Intergenic	Intergenic	11351	NR_045843	432436	Mm.244553	NM_001004162		Gm5420	EG432436	predicted gene 5420	ncRNA
chipseq_peak_5222	chr15	64178105	64178713	+	0	NA	intron (NM_001276462, intron 3 of 27)	L1MB1|LINE|L1	-117961	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding
chipseq_peak_13777	chr9	95665866	95666210	+	0	NA	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	28410	NM_029620	76477	Mm.46016	NM_029620		Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding
chipseq_peak_1584	chr10	54656297	54657295	+	0	NA	Intergenic	Intergenic	580874	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA
chipseq_peak_2788	chr12	29698048	29699707	+	0	NA	intron (NM_008666, intron 3 of 24)	intron (NM_008666, intron 3 of 24)	-12432	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA
chipseq_peak_2647	chr12	6307427	6307876	+	0	NA	Intergenic	Intergenic	931149	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA
chipseq_peak_13457	chr9	37677078	37677878	+	0	NA	Intergenic	Intergenic	-8256	NM_172454	208098	Mm.217159	NM_172454	ENSMUSG00000011118	Panx3	3230401P04|4833413G11Rik	pannexin 3	protein-coding
chipseq_peak_7756	chr2	57905362	57907382	+	0	NA	Intergenic	Intergenic	-91783	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
chipseq_peak_4264	chr14	38797175	38797627	+	0	NA	intron (NM_008734, intron 2 of 9)	intron (NM_008734, intron 2 of 9)	-100901	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
chipseq_peak_11349	chr6	33524213	33527510	+	0	NA	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	276711	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
chipseq_peak_4642	chr14	108557978	108558320	+	0	NA	Intergenic	Intergenic	356090	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_1541	chr10	49496441	49497705	+	0	NA	intron (NM_010349, intron 7 of 17)	intron (NM_010349, intron 7 of 17)	291681	NM_001111268	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding
chipseq_peak_7911	chr2	76970701	76971340	+	0	NA	intron (NM_028004, intron 6 of 191)	intron (NM_028004, intron 6 of 191)	11527	NM_011652	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding
chipseq_peak_3093	chr12	67146212	67146903	+	0	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	75992	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_10475	chr5	47929825	47930778	+	0	NA	Intergenic	Intergenic	-52854	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
chipseq_peak_8212	chr2	136419218	136419856	+	0	NA	Intergenic	L2|LINE|L2	-31570	NM_172858	241656	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|6430627N20|Pak5	p21 protein (Cdc42/Rac)-activated kinase 7	protein-coding
chipseq_peak_6145	chr17	3388640	3389120	+	0	NA	intron (NM_001122998, intron 1 of 26)	intron (NM_001122998, intron 1 of 26)	-8327	NM_011878	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
chipseq_peak_4775	chr15	8581695	8582283	+	0	NA	Intergenic	Intergenic	128818	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
chipseq_peak_12045	chr7	28344741	28345006	+	0	NA	Intergenic	B3A|SINE|B2	-5816	NM_013647	20055	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding
chipseq_peak_12817	chr8	47345123	47345959	+	0	NA	intron (NM_175162, intron 1 of 4)	MIR3|SINE|MIR	6807	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding
chipseq_peak_8594	chr3	35099994	35100520	+	0	NA	Intergenic	Intergenic	-177606	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA
chipseq_peak_3364	chr12	118562432	118562786	+	0	NA	Intergenic	Intergenic	-32416	NR_045947	100384890	Mm.484658	NR_045947		D230030E09Rik	Npe	Riken cDNA D230030E09 gene	ncRNA
chipseq_peak_6824	chr18	51791545	51792950	+	0	NA	Intergenic	Intergenic	331299	NR_029788	723830		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA
chipseq_peak_7375	chr2	6306955	6307524	+	0	NA	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-15518	NM_001080548	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding
chipseq_peak_11499	chr6	52119266	52119618	+	0	NA	Intergenic	Intergenic	16493	NR_110440	102635415	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|OTTMUSG00000018881|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA
chipseq_peak_9196	chr3	123644888	123645419	+	0	NA	intron (NR_121616, intron 2 of 13)	intron (NR_121616, intron 2 of 13)	-25703	NM_001293682	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding
chipseq_peak_13728	chr9	84793524	84795205	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	19966	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA
chipseq_peak_8736	chr3	54478296	54478941	+	0	NA	Intergenic	Lx|LINE|L1	117511	NM_001198765	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding
chipseq_peak_5332	chr15	80088544	80089025	+	0	NA	Intergenic	B3|SINE|B2	-2550	NM_009303	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding
chipseq_peak_5169	chr15	58086429	58087324	+	0	NA	Intergenic	Intergenic	-10368	NM_009572	22770	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding
chipseq_peak_9927	chr4	77534829	77535164	+	0	NA	intron (NM_011211, intron 4 of 39)	Tigger17c|DNA|TcMar-Tigger	676899	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_7317	chr19	57236864	57237999	+	0	NA	Intergenic	B1F|SINE|Alu	-21399	NM_178688	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding
chipseq_peak_2509	chr11	92039883	92041201	+	0	NA	Intergenic	Intergenic	-462987	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding
chipseq_peak_1341	chr10	22978716	22979198	+	0	NA	Intergenic	Intergenic	-158829	NM_011545	21412	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding
chipseq_peak_4706	chr14	116550919	116551374	+	0	NA	Intergenic	Intergenic	-374151	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_5357	chr15	84008928	84009910	+	0	NA	intron (NM_029946, intron 6 of 31)	intron (NM_029946, intron 6 of 31)	55930	NM_029946	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding
chipseq_peak_13749	chr9	90771008	90773172	+	0	NA	Intergenic	Intergenic	-501321	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding
chipseq_peak_2548	chr11	104817043	104817336	+	0	NA	Intergenic	Intergenic	209189	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding
chipseq_peak_13702	chr9	78880159	78880887	+	0	NA	Intergenic	Intergenic	264977	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding
chipseq_peak_13492	chr9	42186570	42188331	+	0	NA	intron (NR_040754, intron 5 of 6)	intron (NR_040754, intron 5 of 6)	21781	NR_040754	78194	Mm.251457	NR_040754		4930546K05Rik	-	RIKEN cDNA 4930546K05 gene	ncRNA
chipseq_peak_13404	chr9	28738103	28738929	+	0	NA	intron (NM_177906, intron 3 of 7)	intron (NM_177906, intron 3 of 7)	947247	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_12074	chr7	44373613	44374112	+	0	NA	intron (NM_027049, intron 2 of 5)	intron (NM_027049, intron 2 of 5)	1168	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding
chipseq_peak_1780	chr10	91182531	91183007	+	0	NA	Intergenic	Intergenic	-11150	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
chipseq_peak_5077	chr15	45350572	45350960	+	0	NA	Intergenic	Intergenic	-235832	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding
chipseq_peak_7938	chr2	79157954	79159123	+	0	NA	Intergenic	Intergenic	-96888	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding
chipseq_peak_4745	chr14	120913032	120913512	+	0	NA	intron (NM_023579, intron 1 of 25)	intron (NM_023579, intron 1 of 25)	2078	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding
chipseq_peak_337	chr1	52897776	52899164	+	0	NA	intron (NM_146108, intron 7 of 13)	L1_Mus1|LINE|L1	53432	NM_146108	227095	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding
chipseq_peak_8249	chr2	140497734	140498206	+	0	NA	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	102535	NM_028387	72899	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding
chipseq_peak_2787	chr12	29680335	29680611	+	0	NA	intron (NR_046080, intron 2 of 3)	intron (NR_046080, intron 2 of 3)	5972	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA
chipseq_peak_8182	chr2	132371021	132371901	+	0	NA	3' UTR (NM_144944, exon 3 of 3)	3' UTR (NM_144944, exon 3 of 3)	13986	NM_144944	246313	Mm.283777	NM_144944	ENSMUSG00000050558	Prokr2	B830005M06Rik|EG-VEGRF2|Gpcr73l1|Gpr73l1|PKR2	prokineticin receptor 2	protein-coding
chipseq_peak_7671	chr2	47990856	47991978	+	0	NA	Intergenic	Intergenic	-822692	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_14045	chrX	84457359	84457695	+	0	NA	intron (NM_007868, intron 50 of 78)	intron (NM_007868, intron 50 of 78)	-590768	NM_001314038	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding
chipseq_peak_12411	chr7	100302355	100302782	+	0	NA	intron (NM_177161, intron 5 of 12)	intron (NM_177161, intron 5 of 12)	17048	NM_177161	320452	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding
chipseq_peak_10734	chr5	82956071	82956451	+	0	NA	Intergenic	Intergenic	-157196	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
chipseq_peak_11628	chr6	80905119	80905672	+	0	NA	Intergenic	Intergenic	885752	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding
chipseq_peak_8625	chr3	39909736	39910124	+	0	NA	Intergenic	Intergenic	612982	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_11083	chr5	142593601	142594040	+	0	NA	intron (NM_175217, intron 1 of 6)	intron (NM_175217, intron 1 of 6)	14932	NM_175217	75104	Mm.48712	NM_175217		Mmd2	4930518M15Rik|C88001	monocyte to macrophage differentiation-associated 2	protein-coding
chipseq_peak_9481	chr4	7829160	7829454	+	0	NA	Intergenic	Intergenic	268619	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA
chipseq_peak_5929	chr16	72306708	72308148	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-73101	NR_131115	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA
chipseq_peak_14038	chrX	76180752	76181957	+	0	NA	Intergenic	Intergenic	-82952	NM_001013760	238829	Mm.292319	NM_001013760	ENSMUSG00000071738	Cldn34b3	EG238829|Gm4937	claudin 34B3	protein-coding
chipseq_peak_3215	chr12	81324137	81324419	+	0	NA	intron (NM_080440, intron 1 of 7)	L3|LINE|CR1	8902	NM_001167920	110893	Mm.443748	NM_080440	ENSMUSG00000079055	Slc8a3	AW742262|Ncx3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding
chipseq_peak_12172	chr7	63169983	63171011	+	0	NA	intron (NM_007390, intron 2 of 9)	HAL1b|LINE|L1	42029	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding
chipseq_peak_2444	chr11	80570690	80571128	+	0	NA	intron (NM_177390, intron 20 of 21)	Tigger15a|DNA|TcMar-Tigger	-61803	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA
chipseq_peak_11127	chr5	150191237	150191533	+	0	NA	Intergenic	Intergenic	-68545	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	furry homolog (Drosophila)	protein-coding
chipseq_peak_13859	chr9	106512802	106513687	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-1329	NM_029300	75470	Mm.63799	NM_029300	ENSMUSG00000066382	Iqcf5	1700007L12Rik	IQ motif containing F5	protein-coding
chipseq_peak_5616	chr16	37562876	37563459	+	0	NA	intron (NM_001042499, intron 4 of 7)	intron (NM_001042499, intron 4 of 7)	-16986	NM_013547	15233	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding
chipseq_peak_8496	chr3	18784079	18784442	+	0	NA	Intergenic	Lx8|LINE|L1	-303783	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
chipseq_peak_2589	chr11	110799743	110800547	+	0	NA	Intergenic	Intergenic	-167888	NM_010604	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
chipseq_peak_11460	chr6	47106009	47106614	+	0	NA	intron (NM_001004357, intron 19 of 23)	intron (NM_001004357, intron 19 of 23)	-138085	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_6307	chr17	53335796	53336821	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	127013	NM_172497	211482	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding
chipseq_peak_3547	chr13	41074112	41074724	+	0	NA	intron (NM_001145803, intron 1 of 14)	(CA)n|Simple_repeat|Simple_repeat	-3953	NM_008547	17152	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding
chipseq_peak_11240	chr6	17859596	17860666	+	0	NA	intron (NM_001289625, intron 9 of 15)	intron (NM_001289625, intron 9 of 15)	110961	NM_001083315	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
chipseq_peak_11367	chr6	34407638	34408011	+	0	NA	Intergenic	Intergenic	-4538	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding
chipseq_peak_8440	chr3	8367453	8368120	+	0	NA	Intergenic	Intergenic	95312	NR_033512	620966	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo
chipseq_peak_8157	chr2	125515202	125515888	+	0	NA	Intergenic	Intergenic	-9107	NM_007993	14118	Mm.271644	NM_007993	ENSMUSG00000027204	Fbn1	AI536462|B430209H23|Fib-1|Tsk	fibrillin 1	protein-coding
chipseq_peak_2615	chr11	117028884	117029329	+	0	NA	Intergenic	Intergenic	-47677	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA
chipseq_peak_13885	chr9	112102217	112104423	+	0	NA	intron (NM_001177618, intron 17 of 18)	intron (NM_001177618, intron 17 of 18)	15391	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA
chipseq_peak_1763	chr10	89510667	89511140	+	0	NA	intron (NM_001163504, intron 2 of 9)	ID_B1|SINE|B4	-4245	NM_009108	20186	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding
chipseq_peak_13843	chr9	105274933	105275281	+	0	NA	intron (NM_172461, intron 12 of 15)	intron (NM_172461, intron 12 of 15)	120180	NM_172461	208583	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding
chipseq_peak_13576	chr9	54463343	54463930	+	0	NA	intron (NM_172771, intron 6 of 43)	intron (NM_172771, intron 6 of 43)	37990	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding
chipseq_peak_6377	chr17	67127610	67127858	+	0	NA	intron (NM_008984, intron 2 of 30)	intron (NM_008984, intron 2 of 30)	-101499	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA
chipseq_peak_9161	chr3	120370367	120370892	+	0	NA	Intergenic	MLTR18B_MM|LTR|ERVK	516103	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_4041	chr13	109605168	109605570	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	280625	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_12038	chr7	19715721	19716527	+	0	NA	promoter-TSS (NM_001109748)	promoter-TSS (NM_001109748)	-695	NM_016871	53333	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40 homolog (yeast)	protein-coding
chipseq_peak_11073	chr5	139146539	139147969	+	0	NA	Intergenic	Intergenic	-2969	NM_001081265	433956	Mm.5547	NM_001081265	ENSMUSG00000025857	Dnaaf5	BC053401|C76907|Heatr2	dynein, axonemal, assembly factor 5	protein-coding
chipseq_peak_11966	chr6	140776321	140776680	+	0	NA	Intergenic	Intergenic	149615	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding
chipseq_peak_6167	chr17	5237621	5238059	+	0	NA	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	180927	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding
chipseq_peak_2816	chr12	33035433	33036245	+	0	NA	intron (NM_001024478, intron 18 of 19)	intron (NM_001024478, intron 18 of 19)	57036	NM_001024478	68764	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding
chipseq_peak_10078	chr4	101450197	101450795	+	0	NA	intron (NM_001177602, intron 3 of 5)	intron (NM_001177602, intron 3 of 5)	30793	NM_009647	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding
chipseq_peak_1913	chr10	105427653	105428663	+	0	NA	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	146321	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
chipseq_peak_10631	chr5	70500339	70502427	+	0	NA	Intergenic	Intergenic	341234	NM_010252	14405	Mm.255292	NM_010252	ENSMUSG00000001260	Gabrg1	GabaA|GabaA/BZ	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	protein-coding
chipseq_peak_10629	chr5	69794446	69794950	+	0	NA	Intergenic	Intergenic	-202413	NM_001038015	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding
chipseq_peak_3087	chr12	67017144	67017609	+	0	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	205173	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_12746	chr8	37349158	37349671	+	0	NA	Intergenic	Intergenic	-325176	NR_126063	414128	Mm.450976	NR_126063		G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA
chipseq_peak_1456	chr10	37035150	37035569	+	0	NA	Intergenic	Intergenic	60815	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding
chipseq_peak_5016	chr15	40533644	40534225	+	0	NA	Intergenic	Intergenic	-6657	NR_046185	432945	Mm.321981	NR_046185	ENSMUSG00000056332	Gm16294	EG432945|OTTMUSG00000033304	predicted gene 16294	ncRNA
chipseq_peak_1711	chr10	73593375	73593845	+	0	NA	Intergenic	Intergenic	-228257	NM_001142747	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
chipseq_peak_9178	chr3	121966866	121969772	+	0	NA	intron (NM_172525, intron 1 of 22)	MIR|SINE|MIR	14993	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding
chipseq_peak_13635	chr9	61756497	61757278	+	0	NA	Intergenic	Intergenic	157623	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding
chipseq_peak_895	chr1	144431620	144433170	+	0	NA	Intergenic	Intergenic	135272	NM_001290269	624910	Mm.389199	NM_001290269		Rgs21	EG624910	regulator of G-protein signalling 21	protein-coding
chipseq_peak_1188	chr1	190213245	190213533	+	0	NA	Intergenic	L1MCa|LINE|L1	-42709	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding
chipseq_peak_2410	chr11	70213030	70213321	+	0	NA	promoter-TSS (NM_153081)	promoter-TSS (NM_153081)	-735	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding
chipseq_peak_11044	chr5	132850764	132851200	+	0	NA	Intergenic	Intergenic	-308639	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
chipseq_peak_4545	chr14	93515387	93517379	+	0	NA	intron (NM_001271798, intron 2 of 3)	Tigger17a|DNA|TcMar-Tigger	372505	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_4480	chr14	83246133	83247897	+	0	NA	Intergenic	Intergenic	-1196548	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
chipseq_peak_13649	chr9	63822931	63823440	+	0	NA	Intergenic	MER53|DNA|hAT	-65191	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding
chipseq_peak_4903	chr15	22969493	22970036	+	0	NA	Intergenic	Intergenic	-66699	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_13554	chr9	51630827	51631341	+	0	NA	Intergenic	Intergenic	-134268	NM_175535	244867	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding
chipseq_peak_7013	chr18	77114780	77115484	+	0	NA	intron (NM_001164167, intron 3 of 13)	RSINE1|SINE|B4	49452	NM_001164168	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding
chipseq_peak_11599	chr6	76661826	76662441	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-580584	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_9464	chr4	6790515	6791006	+	0	NA	intron (NM_145711, intron 3 of 8)	intron (NM_145711, intron 3 of 8)	199963	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_9983	chr4	82890923	82891713	+	0	NA	Intergenic	Intergenic	-6167	NM_009887	12622	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1 homolog (Xenopus laevis)	protein-coding
chipseq_peak_3964	chr13	101290693	101291290	+	0	NA	intron (NR_045846, intron 5 of 5)	intron (NR_045846, intron 5 of 5)	36672	NR_045846	71174	Mm.399537	NR_045846		4933416M06Rik	-	RIKEN cDNA 4933416M06 gene	ncRNA
chipseq_peak_5706	chr16	46601706	46602989	+	0	NA	Intergenic	Intergenic	-105380	NM_021496	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
chipseq_peak_851	chr1	140171530	140171981	+	0	NA	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	11656	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding
chipseq_peak_5246	chr15	66397233	66397665	+	0	NA	intron (NM_019457, intron 10 of 11)	intron (NM_019457, intron 10 of 11)	103461	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding
chipseq_peak_3217	chr12	81726191	81726689	+	0	NA	intron (NM_001174107, intron 8 of 10)	intron (NM_001174107, intron 8 of 10)	54730	NM_001174107	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding
chipseq_peak_10519	chr5	56017720	56018057	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	1667896	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
chipseq_peak_3749	chr13	81439474	81439879	+	0	NA	intron (NM_054053, intron 66 of 89)	intron (NM_054053, intron 66 of 89)	193468	NM_054053	110789	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding
chipseq_peak_5446	chr15	99056581	99056846	+	0	NA	intron (NM_001163588, intron 3 of 7)	(TTAA)n|Simple_repeat|Simple_repeat	1539	NM_013639	19132	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding
chipseq_peak_7710	chr2	53105868	53106728	+	0	NA	intron (NM_172409, intron 13 of 26)	intron (NM_172409, intron 13 of 26)	84889	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP11|Fnbp11|Fnbp3	PRP40 pre-mRNA processing factor 40 homolog A (yeast)	protein-coding
chipseq_peak_14008	chrX	58976544	58977104	+	0	NA	Intergenic	Intergenic	65363	NM_023774	75352	Mm.60906	NM_023774	ENSMUSG00000046180	4930550L24Rik	mage-k1	RIKEN cDNA 4930550L24 gene	protein-coding
chipseq_peak_3857	chr13	89542990	89543330	+	0	NA	intron (NM_013500, intron 1 of 4)	intron (NM_013500, intron 1 of 4)	2524	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding
chipseq_peak_2454	chr11	81512061	81512833	+	0	NA	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	61092	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding
chipseq_peak_11066	chr5	136505719	136506629	+	0	NA	intron (NM_198602, intron 1 of 22)	intron (NM_198602, intron 1 of 22)	59807	NM_001291233	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
chipseq_peak_8340	chr2	157531554	157532502	+	0	NA	Intergenic	Intergenic	-28050	NM_001291129	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding
chipseq_peak_11554	chr6	61581712	61582109	+	0	NA	intron (NM_001164316, intron 6 of 10)	intron (NM_001164316, intron 6 of 10)	-401100	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
chipseq_peak_657	chr1	99289018	99289359	+	0	NA	Intergenic	Intergenic	-483577	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding
chipseq_peak_13466	chr9	40506516	40507301	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-51144	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding
chipseq_peak_9271	chr3	138144483	138145114	+	0	NA	intron (NM_175389, intron 1 of 7)	intron (NM_175389, intron 1 of 7)	1260	NM_175389	108943	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding
chipseq_peak_8022	chr2	100313200	100313535	+	0	NA	Intergenic	Intergenic	-1311381	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
chipseq_peak_13613	chr9	60296440	60296870	+	0	NA	intron (NM_001040426, intron 6 of 17)	intron (NM_001040426, intron 6 of 17)	-155435	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding
chipseq_peak_603	chr1	90012101	90012559	+	0	NA	intron (NM_139152, intron 1 of 5)	intron (NM_139152, intron 1 of 5)	2247	NM_139152	208372	Mm.215164	NM_139152		Asb18	Asb-18	ankyrin repeat and SOCS box-containing 18	protein-coding
chipseq_peak_9765	chr4	47304824	47305390	+	0	NA	intron (NM_009928, intron 34 of 39)	intron (NM_009928, intron 34 of 39)	-48115	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding
chipseq_peak_5984	chr16	74655472	74656227	+	0	NA	Intergenic	Intergenic	-244937	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_3334	chr12	106353141	106353727	+	0	NA	Intergenic	Intergenic	94232	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA
chipseq_peak_2691	chr12	12287499	12289009	+	0	NA	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	26115	NM_001146119	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding
chipseq_peak_4270	chr14	39352232	39352674	+	0	NA	intron (NM_008734, intron 1 of 9)	intron (NM_008734, intron 1 of 9)	-119976	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA
chipseq_peak_8745	chr3	55283979	55284669	+	0	NA	intron (NM_019978, intron 3 of 16)	intron (NM_019978, intron 3 of 16)	41798	NM_001111053	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
chipseq_peak_1276	chr10	13250014	13250812	+	0	NA	intron (NM_001195065, intron 6 of 12)	intron (NM_001195065, intron 6 of 12)	-57276	NM_181470	353258	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 homolog (S. cerevisiae)	protein-coding
chipseq_peak_11646	chr6	86934580	86934917	+	0	NA	intron (NM_177762, intron 2 of 19)	intron (NM_177762, intron 2 of 19)	-75088	NM_020045	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)	protein-coding
chipseq_peak_9805	chr4	53511869	53512776	+	0	NA	intron (NM_001159633, intron 3 of 12)	intron (NM_001159633, intron 3 of 12)	71909	NM_001159633	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding
chipseq_peak_11219	chr6	14838957	14839241	+	0	NA	Intergenic	Intergenic	-62250	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding
chipseq_peak_6494	chr17	87726577	87726930	+	0	NA	Intergenic	Intergenic	54196	NM_008628	17685	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2 (E. coli)	protein-coding
chipseq_peak_13678	chr9	72759003	72759344	+	0	NA	Intergenic	Intergenic	-48101	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin homolog (Gallus gallus)	protein-coding
chipseq_peak_2742	chr12	25790875	25791646	+	0	NA	Intergenic	Intergenic	419245	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
chipseq_peak_2880	chr12	39692569	39693081	+	0	NA	Intergenic	Intergenic	344551	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
chipseq_peak_11027	chr5	131819192	131819878	+	0	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	-60734	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_252	chr1	41001756	41002466	+	0	NA	Intergenic	Intergenic	179141	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_11233	chr6	17186545	17187585	+	0	NA	Intergenic	Intergenic	-10686	NR_102305	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA
chipseq_peak_11376	chr6	36690793	36691871	+	0	NA	Intergenic	Intergenic	120029	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_5540	chr16	24950834	24951248	+	0	NA	intron (NM_001145952, intron 9 of 11)	intron (NM_001145952, intron 9 of 11)	-108598	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA
chipseq_peak_5960	chr16	73707091	73707500	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	634772	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_6256	chr17	44709848	44710301	+	0	NA	intron (NR_073392, intron 4 of 7)	intron (NR_073392, intron 4 of 7)	26102	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding
chipseq_peak_4770	chr15	5258391	5259174	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-14595	NM_001136079	19219	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding
chipseq_peak_8582	chr3	32056391	32057158	+	0	NA	intron (NM_028231, intron 2 of 5)	intron (NM_028231, intron 2 of 5)	154071	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding
chipseq_peak_8866	chr3	70873668	70874420	+	0	NA	Intergenic	Intergenic	-66753	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
chipseq_peak_9340	chr3	146412854	146413147	+	0	NA	intron (NM_001253769, intron 1 of 13)	intron (NM_001253769, intron 1 of 13)	8358	NM_001253768	99167	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X breakpoint 2 interacting protein	protein-coding
chipseq_peak_8193	chr2	134681446	134682480	+	0	NA	Intergenic	Intergenic	-37842	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
chipseq_peak_1809	chr10	94543735	94544473	+	0	NA	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	29247	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding
chipseq_peak_4117	chr13	118006513	118007108	+	0	NA	Intergenic	L1MC1|LINE|L1	-286799	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
chipseq_peak_13373	chr9	27110332	27111055	+	0	NA	intron (NM_023277, intron 1 of 8)	intron (NM_023277, intron 1 of 8)	44728	NM_023277	83964	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding
chipseq_peak_10914	chr5	112093881	112094450	+	0	NA	Intergenic	LTR81A|LTR|Gypsy	-112598	NR_045378	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA
chipseq_peak_10543	chr5	58080870	58081453	+	0	NA	intron (NM_001310608, intron 3 of 3)	intron (NM_001310608, intron 3 of 3)	363080	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding
chipseq_peak_27	chr1	9814887	9816178	+	0	NA	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	17402	NM_133220	170755	Mm.336410	NM_133220		Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding
chipseq_peak_11707	chr6	98229954	98230304	+	0	NA	Intergenic	Intergenic	112625	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_7816	chr2	62806888	62808045	+	0	NA	intron (NM_133207, intron 6 of 15)	intron (NM_133207, intron 6 of 15)	143139	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding
chipseq_peak_3922	chr13	97256183	97257165	+	0	NA	Intergenic	Intergenic	15569	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding
chipseq_peak_1162	chr1	186897521	186897899	+	0	NA	Intergenic	Intergenic	-69706	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding
chipseq_peak_9497	chr4	12286823	12287632	+	0	NA	Intergenic	Intergenic	-115212	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
chipseq_peak_9426	chr3	156833529	156834220	+	0	NA	intron (NM_001039094, intron 1 of 6)	intron (NM_001039094, intron 1 of 6)	272080	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding
chipseq_peak_1477	chr10	39171133	39172163	+	0	NA	Intergenic	Intergenic	-7854	NM_001127376	327743	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|ENSMUSG00000062074|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding
chipseq_peak_12524	chr7	129235578	129235851	+	0	NA	Intergenic	Intergenic	-21380	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding
chipseq_peak_677	chr1	104782977	104783321	+	0	NA	intron (NM_011800, intron 1 of 11)	intron (NM_011800, intron 1 of 11)	14330	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_10732	chr5	82728248	82728600	+	0	NA	Intergenic	Intergenic	70641	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
chipseq_peak_6318	chr17	55327600	55328871	+	0	NA	Intergenic	RLTR20A4|LTR|ERVK	-117482	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding
chipseq_peak_13183	chr8	109565590	109566046	+	0	NA	promoter-TSS (NM_178380)	promoter-TSS (NM_178380)	-168	NM_175646	234723	Mm.37667	NM_175646	ENSMUSG00000031723	Txnl4b	AI595343|D530025J19Rik|DLP|Dim2	thioredoxin-like 4B	protein-coding
chipseq_peak_13352	chr9	23952463	23952936	+	0	NA	Intergenic	Intergenic	-145319	NM_175678	319239	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
chipseq_peak_13504	chr9	44004318	44004777	+	0	NA	Intergenic	RMER15-int|LTR|ERVL	-38837	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding
chipseq_peak_6935	chr18	66719330	66720152	+	0	NA	Intergenic	Intergenic	140746	NM_016977	17202	Mm.229447	NM_016977	ENSMUSG00000047259	Mc4r	Mc4-r	melanocortin 4 receptor	protein-coding
chipseq_peak_13109	chr8	97861527	97861955	+	0	NA	Intergenic	Intergenic	-1150146	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA
chipseq_peak_75	chr1	19668719	19668976	+	0	NA	Intergenic	Intergenic	456793	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding
chipseq_peak_3043	chr12	60240346	60240734	+	0	NA	Intergenic	Intergenic	-1021057	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_10972	chr5	122584896	122586001	+	0	NA	intron (NM_009879, intron 11 of 18)	intron (NM_009879, intron 11 of 18)	29070	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding
chipseq_peak_7680	chr2	49511326	49511772	+	0	NA	intron (NM_172663, intron 2 of 13)	intron (NM_172663, intron 2 of 13)	60063	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
chipseq_peak_13835	chr9	103843533	103844399	+	0	NA	Intergenic	Intergenic	-82129	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding
chipseq_peak_11307	chr6	27211883	27213131	+	0	NA	Intergenic	Intergenic	724243	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA
chipseq_peak_1295	chr10	15549580	15551213	+	0	NA	Intergenic	Intergenic	-241381	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA
chipseq_peak_1173	chr1	188313125	188313893	+	0	NA	intron (NM_021408, intron 2 of 70)	intron (NM_021408, intron 2 of 70)	50671	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin	Usher syndrome 2A (autosomal recessive, mild)	protein-coding
chipseq_peak_3018	chr12	58139005	58139816	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-72394	NM_009216	20605	Mm.278336	NM_009216		Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding
chipseq_peak_13354	chr9	24185877	24186744	+	0	NA	intron (NM_175678, intron 3 of 9)	intron (NM_175678, intron 3 of 9)	88292	NM_175678	319239	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
chipseq_peak_13216	chr8	114694716	114695395	+	0	NA	intron (NM_019573, intron 6 of 8)	intron (NM_019573, intron 6 of 8)	255403	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding
chipseq_peak_6549	chr17	93597729	93599448	+	0	NA	Intergenic	Intergenic	399420	NM_001315504	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
chipseq_peak_910	chr1	147528614	147529644	+	0	NA	Intergenic	Intergenic	1031442	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_12637	chr8	10869704	10870999	+	0	NA	TTS (NR_040705)	TTS (NR_040705)	12103	NR_040705	320014	Mm.403203	NR_040705		B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA
chipseq_peak_1475	chr10	39061527	39061788	+	0	NA	intron (NM_010681, intron 15 of 37)	intron (NM_010681, intron 15 of 37)	72238	NM_183254	66337	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding
chipseq_peak_8529	chr3	24826668	24827210	+	0	NA	Intergenic	Intergenic	1326368	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_4345	chr14	64164997	64165691	+	0	NA	intron (NM_001253712, intron 5 of 5)	intron (NM_001253712, intron 5 of 5)	61021	NM_028525	73382	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding
chipseq_peak_1412	chr10	29638113	29638628	+	0	NA	Intergenic	Intergenic	-102503	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding
chipseq_peak_12523	chr7	129102340	129102972	+	0	NA	Intergenic	Intergenic	-154438	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding
chipseq_peak_7919	chr2	77896616	77898148	+	0	NA	intron (NM_172667, intron 19 of 19)	intron (NM_172667, intron 19 of 19)	48974	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
chipseq_peak_4010	chr13	107812074	107812395	+	0	NA	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	-51147	NR_029759	723929		NR_029759	ENSMUSG00000065425	Mir325	Mirn325|mmu-mir-325	microRNA 325	ncRNA
chipseq_peak_8894	chr3	76678944	76681575	+	0	NA	intron (NM_178673, intron 15 of 15)	(CAAA)n|Simple_repeat|Simple_repeat	604676	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding
chipseq_peak_2189	chr11	24371264	24371722	+	0	NA	Intergenic	Intergenic	-110416	NR_045857	71316	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA
chipseq_peak_1910	chr10	105088780	105089097	+	0	NA	Intergenic	Intergenic	485541	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
chipseq_peak_2577	chr11	109961813	109962172	+	0	NA	intron (NM_013851, intron 17 of 38)	intron (NM_013851, intron 17 of 38)	33824	NM_013851	27404	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding
chipseq_peak_1609	chr10	59002117	59003174	+	0	NA	intron (NM_172788, intron 2 of 9)	L1MCa|LINE|L1	189286	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding
chipseq_peak_10363	chr5	23616158	23617223	+	0	NA	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-119	NM_009274	20817	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding
chipseq_peak_9269	chr3	137728743	137729875	+	0	NA	Intergenic	Intergenic	105637	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding
chipseq_peak_1650	chr10	67462078	67462543	+	0	NA	Intergenic	Intergenic	-75559	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding
chipseq_peak_6516	chr17	90080221	90080655	+	0	NA	intron (NM_020252, intron 21 of 22)	B1_Mus2|SINE|Alu	701197	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
chipseq_peak_11986	chr6	144097899	144099043	+	0	NA	intron (NM_001113559, intron 3 of 13)	intron (NM_001113559, intron 3 of 13)	111097	NM_011444	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
chipseq_peak_1613	chr10	59334728	59335214	+	0	NA	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	11675	NM_001316371	18451	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding
chipseq_peak_9303	chr3	141894388	141895498	+	0	NA	intron (NM_001277216, intron 2 of 11)	intron (NM_001277216, intron 2 of 11)	36645	NM_001277218	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding
chipseq_peak_10196	chr4	134430358	134432024	+	0	NA	Intergenic	Intergenic	18980	NR_045800	69409	Mm.226215	NR_045800	ENSMUSG00000087343	1700021N21Rik	-	RIKEN cDNA 1700021N21 gene	ncRNA
chipseq_peak_13232	chr8	119158632	119159007	+	0	NA	intron (NM_019707, intron 7 of 13)	intron (NM_019707, intron 7 of 13)	-185719	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding
chipseq_peak_5923	chr16	72118315	72118702	+	0	NA	Intergenic	Intergenic	115819	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA
chipseq_peak_3161	chr12	74275268	74275578	+	0	NA	Intergenic	L1MC1|LINE|L1	-8853	NR_030735	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA
chipseq_peak_3208	chr12	79389145	79390563	+	0	NA	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	92503	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 homolog B	protein-coding
chipseq_peak_7025	chr18	78925994	78926384	+	0	NA	intron (NM_053099, intron 2 of 5)	intron (NM_053099, intron 2 of 5)	183202	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
chipseq_peak_5476	chr16	6036920	6037982	+	0	NA	intron (NM_021477, intron 1 of 16)	MIRc|SINE|MIR	61864	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA
chipseq_peak_8722	chr3	53786969	53787371	+	0	NA	Intergenic	Intergenic	76637	NM_026435	67890	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|ENSMUSG00000074598|Gm10726	ubiquitin-fold modifier 1	protein-coding
chipseq_peak_3628	chr13	51805583	51806420	+	0	NA	Intergenic	Intergenic	-12254	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding
chipseq_peak_8334	chr2	156937735	156938141	+	0	NA	intron (NM_180956, intron 10 of 16)	intron (NM_180956, intron 10 of 16)	-50860	NM_029983	77799	Mm.29264	NM_029983	ENSMUSG00000027636	Sla2	A930009E21Rik|AI430952|SLAP-2|SLAP2	Src-like-adaptor 2	protein-coding
chipseq_peak_1399	chr10	28391411	28392376	+	0	NA	intron (NM_008983, intron 7 of 31)	intron (NM_008983, intron 7 of 31)	-276467	NM_001305663	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding
chipseq_peak_4030	chr13	109299919	109300228	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-24671	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_12317	chr7	90949048	90949678	+	0	NA	Intergenic	Intergenic	-141423	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_6956	chr18	68019471	68020995	+	0	NA	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	86976	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding
chipseq_peak_2642	chr12	6087800	6088486	+	0	NA	Intergenic	Intergenic	711641	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA
chipseq_peak_13751	chr9	90980119	90980524	+	0	NA	Intergenic	Intergenic	385478	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding
chipseq_peak_932	chr1	151998465	151999310	+	0	NA	intron (NM_197990, intron 2 of 5)	intron (NM_197990, intron 2 of 5)	91433	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding
chipseq_peak_6865	chr18	55201441	55201957	+	0	NA	Intergenic	Intergenic	-211519	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_334	chr1	52578416	52578939	+	0	NA	Intergenic	Intergenic	-52028	NR_024590	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Tmem194b	5330401P04Rik|9830163O08|Nemp2	transmembrane protein 194B	protein-coding
chipseq_peak_5354	chr15	83988808	83989779	+	0	NA	intron (NM_029946, intron 6 of 31)	intron (NM_029946, intron 6 of 31)	-53198	NM_001161628	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding
chipseq_peak_3267	chr12	92379108	92379730	+	0	NA	Intergenic	Intergenic	-530262	NM_001039089	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chipseq_peak_5280	chr15	68805700	68806073	+	0	NA	Intergenic	Intergenic	-122534	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
chipseq_peak_3506	chr13	29195660	29196323	+	0	NA	intron (NR_131896, intron 15 of 16)	intron (NR_131896, intron 15 of 16)	179736	NR_045073	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
chipseq_peak_11172	chr6	12177842	12179579	+	0	NA	Intergenic	RLTR25B|LTR|ERVK	-69130	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo
chipseq_peak_7473	chr2	14428997	14429693	+	0	NA	intron (NM_001012305, intron 7 of 12)	L1_Mur3|LINE|L1	40947	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding
chipseq_peak_5492	chr16	7282361	7282845	+	0	NA	intron (NM_183188, intron 3 of 12)	intron (NM_183188, intron 3 of 12)	212768	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_4613	chr14	105631032	105631957	+	0	NA	Intergenic	Intergenic	-7724	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
chipseq_peak_11586	chr6	73868707	73869836	+	0	NA	Intergenic	B3|SINE|B2	-398250	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA
chipseq_peak_13155	chr8	104027118	104027842	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-74145	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding
chipseq_peak_232	chr1	38683037	38684291	+	0	NA	Intergenic	L1ME1|LINE|L1	-56420	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding
chipseq_peak_11202	chr6	13868760	13869056	+	0	NA	TTS (NR_024619)	TTS (NR_024619)	2575	NR_024619	66520	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	ncRNA
chipseq_peak_8388	chr2	170540877	170541577	+	0	NA	Intergenic	Intergenic	-29300	NR_040367	100502946	Mm.421284	NR_040367	ENSMUSG00000085495	Gm16796	-	predicted gene, 16796	ncRNA
chipseq_peak_8947	chr3	81530489	81530857	+	0	NA	Intergenic	Intergenic	-401943	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
chipseq_peak_2343	chr11	47939721	47940162	+	0	NA	intron (NR_105801, intron 3 of 3)	intron (NR_105801, intron 3 of 3)	134642	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA
chipseq_peak_12342	chr7	91730340	91730742	+	0	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-331853	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_11230	chr6	17150940	17152489	+	0	NA	Intergenic	Intergenic	-46037	NR_102305	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA
chipseq_peak_10925	chr5	114475105	114475657	+	0	NA	Intergenic	Intergenic	31112	NM_001306205	17855	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding
chipseq_peak_11195	chr6	13691698	13692749	+	0	NA	Intergenic	L1ME2|LINE|L1	-14257	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	B630005N14Rik	AI666701	RIKEN cDNA B630005N14 gene	protein-coding
chipseq_peak_10115	chr4	105034258	105034672	+	0	NA	3' UTR (NM_178143, exon 9 of 9)	3' UTR (NM_178143, exon 9 of 9)	75433	NM_178143	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding
chipseq_peak_5820	chr16	61790246	61790897	+	0	NA	Intergenic	Intergenic	996145	NM_178925	106338	Mm.26321	NM_178925		Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding
chipseq_peak_6869	chr18	55379491	55379891	+	0	NA	Intergenic	Intergenic	-389511	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_3394	chr13	6177913	6179293	+	0	NA	Intergenic	Intergenic	317114	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding
chipseq_peak_12162	chr7	58920018	58920760	+	0	NA	Intergenic	L1MA4|LINE|L1	262187	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding
chipseq_peak_6920	chr18	65191129	65191877	+	0	NA	intron (NM_031881, intron 19 of 29)	intron (NM_031881, intron 19 of 29)	-57358	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA
chipseq_peak_9515	chr4	13206375	13207827	+	0	NA	Intergenic	Intergenic	300264	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_4415	chr14	75685390	75685675	+	0	NA	Intergenic	Intergenic	43273	NM_029230	75272	Mm.159483	NM_029230	ENSMUSG00000022002	Erich6b	4930564B18Rik	glutamate rich 6B	protein-coding
chipseq_peak_217	chr1	35663613	35664168	+	0	NA	Intergenic	L1PB4|LINE|L1	-404510	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chipseq_peak_12830	chr8	48600411	48601173	+	0	NA	intron (NM_011857, intron 2 of 28)	intron (NM_011857, intron 2 of 28)	73898	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_3989	chr13	104787257	104787847	+	0	NA	intron (NM_026072, intron 10 of 13)	intron (NM_026072, intron 10 of 13)	29401	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
chipseq_peak_4182	chr14	20994419	20994930	+	0	NA	intron (NM_009502, intron 6 of 20)	intron (NM_009502, intron 6 of 20)	57768	NM_018829	55946	Mm.376269	NM_018829		Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding
chipseq_peak_8448	chr3	9822949	9824391	+	0	NA	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	10009	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding
chipseq_peak_3912	chr13	95766206	95766692	+	0	NA	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	69529	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding
chipseq_peak_4664	chr14	111971143	111971687	+	0	NA	Intergenic	Intergenic	-50015	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
chipseq_peak_3489	chr13	25932930	25933745	+	0	NA	intron (NR_045062, intron 1 of 3)	intron (NR_045062, intron 1 of 3)	32979	NR_045062	100503530	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	OTTMUSG00000000620	predicted gene 11351	ncRNA
chipseq_peak_11630	chr6	81190218	81191009	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	705050	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA
chipseq_peak_6042	chr16	77832567	77833450	+	0	NA	Intergenic	Intergenic	186735	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_6536	chr17	91092595	91094022	+	0	NA	promoter-TSS (NM_177284)	promoter-TSS (NM_177284)	-506	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
chipseq_peak_3418	chr13	9757844	9758539	+	0	NA	intron (NM_001199141, intron 1 of 14)	intron (NM_001199141, intron 1 of 14)	7123	NM_001199141	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding
chipseq_peak_5964	chr16	73804572	73805437	+	0	NA	Intergenic	Intergenic	537063	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_2018	chr10	116407558	116408327	+	0	NA	Intergenic	Intergenic	-10179	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA
chipseq_peak_9252	chr3	134590914	134591447	+	0	NA	Intergenic	Intergenic	-167545	NR_040600	75208	Mm.84580	NR_040600	ENSMUSG00000105765	4930539C22Rik	-	RIKEN cDNA 4930539C22 gene	ncRNA
chipseq_peak_5640	chr16	40247597	40248027	+	0	NA	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-1285530	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_4058	chr13	110496052	110496625	+	0	NA	Intergenic	Intergenic	101294	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding
chipseq_peak_9398	chr3	153482021	153483310	+	0	NA	intron (NM_011372, intron 2 of 4)	intron (NM_011372, intron 2 of 4)	-184016	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA
chipseq_peak_13434	chr9	33173354	33173692	+	0	NA	Intergenic	Intergenic	-244557	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA
chipseq_peak_13654	chr9	65196351	65197160	+	0	NA	Intergenic	Intergenic	-17935	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding
chipseq_peak_4436	chr14	77546414	77546946	+	0	NA	intron (NM_172813, intron 7 of 18)	intron (NM_172813, intron 7 of 18)	-39812	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA
chipseq_peak_9524	chr4	13599180	13601504	+	0	NA	Intergenic	Intergenic	-142960	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_8980	chr3	84595313	84596849	+	0	NA	3' UTR (NM_207278, exon 1 of 1)	3' UTR (NM_207278, exon 1 of 1)	2507	NM_207278	403175	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding
chipseq_peak_793	chr1	130297451	130297982	+	0	NA	Intergenic	Intergenic	125283	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding
chipseq_peak_2900	chr12	42402322	42402609	+	0	NA	Intergenic	Lx10|LINE|L1	-916408	NM_001271709	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_5086	chr15	47531599	47532518	+	0	NA	Intergenic	Intergenic	908753	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA
chipseq_peak_9300	chr3	141386523	141386852	+	0	NA	Intergenic	Intergenic	-78877	NM_009472	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 homolog C (C. elegans)	protein-coding
chipseq_peak_6622	chr18	19851155	19851459	+	0	NA	Intergenic	Intergenic	150790	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_4032	chr13	109405421	109405815	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	80874	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_7115	chr19	20068081	20069405	+	0	NA	Intergenic	Intergenic	321928	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding
chipseq_peak_6737	chr18	33790069	33790425	+	0	NA	Intergenic	Intergenic	-4645	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA
chipseq_peak_5489	chr16	6946127	6946697	+	0	NA	intron (NM_021477, intron 5 of 16)	intron (NM_021477, intron 5 of 16)	-123423	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_2822	chr12	33591028	33591841	+	0	NA	Intergenic	L1MA7|LINE|L1	161810	NM_172253	28071	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding
chipseq_peak_4324	chr14	60410048	60410680	+	0	NA	Intergenic	Intergenic	32078	NM_028113	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding
chipseq_peak_7302	chr19	53165583	53166044	+	0	NA	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	21816	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding
chipseq_peak_10741	chr5	83440280	83440687	+	0	NA	Intergenic	Intergenic	-85288	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding
chipseq_peak_11205	chr6	13982808	13983276	+	0	NA	Intergenic	Intergenic	111473	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
chipseq_peak_2443	chr11	80518598	80519074	+	0	NA	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	-9730	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA
chipseq_peak_8491	chr3	18625371	18626243	+	0	NA	Intergenic	Intergenic	-145330	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
chipseq_peak_12561	chr7	135980162	135980793	+	0	NA	Intergenic	Intergenic	-264098	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding
chipseq_peak_8378	chr2	166270953	166272267	+	0	NA	Intergenic	Intergenic	-2298	NR_033467	670775	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	OTTMUSG00000001131	predicted gene 11468	ncRNA
chipseq_peak_4656	chr14	111620600	111621343	+	0	NA	Intergenic	Intergenic	-54144	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding
chipseq_peak_11291	chr6	24397226	24398244	+	0	NA	Intergenic	Intergenic	117332	NM_172535	214704	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding
chipseq_peak_10786	chr5	89757955	89758344	+	0	NA	intron (NM_177872, intron 4 of 21)	intron (NM_177872, intron 4 of 21)	125185	NM_001081401	330119	Mm.133062	NM_177872		Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding
chipseq_peak_2591	chr11	110811150	110811774	+	0	NA	Intergenic	Intergenic	-156571	NM_010604	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
chipseq_peak_4061	chr13	110649703	110653564	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-251866	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA
chipseq_peak_7748	chr2	57481400	57481732	+	0	NA	Intergenic	L1MC|LINE|L1	243184	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding
chipseq_peak_3308	chr12	98601830	98603120	+	0	NA	Intergenic	Intergenic	-24262	NM_029911	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding
chipseq_peak_6772	chr18	42450121	42450649	+	0	NA	Intergenic	Intergenic	55788	NM_138945	18998	Mm.488204	NM_138945		Pou4f3	Brn3.1|Brn3c|ddl|dreidel	POU domain, class 4, transcription factor 3	protein-coding
chipseq_peak_10751	chr5	84271228	84272105	+	0	NA	intron (NM_007937, intron 3 of 15)	(TTTA)n|Simple_repeat|Simple_repeat	145716	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_9778	chr4	48725764	48726307	+	0	NA	Intergenic	Intergenic	62521	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding
chipseq_peak_1197	chr1	192966314	192966703	+	0	NA	intron (NM_001301370, intron 4 of 8)	(TTAA)n|Simple_repeat|Simple_repeat	69267	NM_001301370	329324	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding
chipseq_peak_13188	chr8	111468488	111469251	+	0	NA	intron (NM_176923, intron 18 of 26)	intron (NM_176923, intron 18 of 26)	18669	NR_105819	102466970		NR_105819	ENSMUSG00000098410	Mir1957b	Gm27725|mmu-mir-1957b	microRNA 1957b	ncRNA
chipseq_peak_13862	chr9	106639834	106640720	+	0	NA	Intergenic	Intergenic	13695	NM_001101628	100041096	Mm.477435	NM_001101628	ENSMUSG00000091129	Iqcf6	-	IQ motif containing F6	protein-coding
chipseq_peak_11474	chr6	49558541	49559460	+	0	NA	Intergenic	PB1D7|SINE|Alu	163396	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding
chipseq_peak_1357	chr10	25677755	25678251	+	0	NA	Intergenic	Intergenic	-141731	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding
chipseq_peak_1148	chr1	181976583	181977224	+	0	NA	intron (NM_001083121, intron 1 of 13)	intron (NM_001083121, intron 1 of 13)	43077	NM_001083120	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding
chipseq_peak_11732	chr6	100968109	100968469	+	0	NA	Intergenic	Intergenic	134651	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding
chipseq_peak_821	chr1	136630445	136631076	+	0	NA	TTS (NM_177643)	TTS (NM_177643)	5859	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding
chipseq_peak_13817	chr9	101990844	101991234	+	0	NA	intron (NM_173447, intron 9 of 15)	L3|LINE|CR1	313936	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA
chipseq_peak_13438	chr9	33292195	33292478	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-363370	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA
chipseq_peak_13646	chr9	63511271	63512991	+	0	NA	intron (NM_001311098, intron 12 of 21)	intron (NM_001311098, intron 12 of 21)	90362	NM_001311098	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding
chipseq_peak_902	chr1	146231802	146232206	+	0	NA	Intergenic	Intergenic	-263662	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_3760	chr13	81980120	81980666	+	0	NA	Intergenic	MIR|SINE|MIR	197101	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_11656	chr6	92459516	92460322	+	0	NA	intron (NM_001081146, intron 2 of 8)	intron (NM_001081146, intron 2 of 8)	21473	NM_001134460	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle homolog 2 (Drosophila)	protein-coding
chipseq_peak_10328	chr5	17001378	17001949	+	0	NA	Intergenic	Intergenic	447762	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
chipseq_peak_5784	chr16	54497596	54499341	+	0	NA	Intergenic	MER131|SINE?|SINE?	784769	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
chipseq_peak_1320	chr10	19030671	19031047	+	0	NA	Intergenic	Intergenic	-15449	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding
chipseq_peak_8140	chr2	122739032	122739957	+	0	NA	intron (NM_019788, intron 1 of 4)	ID4|SINE|ID	989	NM_019788	18457	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding
chipseq_peak_13960	chr9	122467780	122468212	+	0	NA	Intergenic	L1MEc|LINE|L1	-69195	NR_045967	654800	Mm.393956	NR_045967		A730085K08Rik	-	RIKEN cDNA A730085K08 gene	ncRNA
chipseq_peak_6603	chr18	16601657	16603272	+	0	NA	intron (NM_007664, intron 14 of 15)	intron (NM_007664, intron 14 of 15)	206782	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding
chipseq_peak_11256	chr6	18710762	18711188	+	0	NA	Intergenic	Intergenic	-137660	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
chipseq_peak_3643	chr13	55571044	55571972	+	0	NA	promoter-TSS (NM_145382)	promoter-TSS (NM_145382)	-388	NM_145382	212483	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding
chipseq_peak_11767	chr6	103513657	103515596	+	0	NA	intron (NM_007697, intron 1 of 26)	intron (NM_007697, intron 1 of 26)	3750	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_13631	chr9	61500818	61501338	+	0	NA	Intergenic	L1ME4b|LINE|L1	128712	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_5265	chr15	67056639	67057205	+	0	NA	Intergenic	Intergenic	-87281	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding
chipseq_peak_2409	chr11	69369803	69370737	+	0	NA	promoter-TSS (NM_146019)	promoter-TSS (NM_146019)	-844	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding
chipseq_peak_11252	chr6	18674006	18675405	+	0	NA	Intergenic	Intergenic	-159880	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_2888	chr12	41393981	41395114	+	0	NA	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	91510	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_738	chr1	121314427	121315325	+	0	NA	intron (NM_001271532, intron 1 of 4)	intron (NM_001271532, intron 1 of 4)	12802	NM_001271531	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding
chipseq_peak_7130	chr19	21775528	21776876	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-2138	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding
chipseq_peak_5106	chr15	50808427	50808766	+	0	NA	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	80453	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_2344	chr11	48599669	48600276	+	0	NA	Intergenic	Intergenic	-200388	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Gnb2l1	AL033335|GB-like|Gnb2-rs1|Rack1|p205	guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	protein-coding
chipseq_peak_2277	chr11	38844344	38844853	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	-324553	NR_040295	100502917	Mm.61144	NR_040295		Gm12130	OTTMUSG00000005424	predicted gene 12130	ncRNA
chipseq_peak_5639	chr16	40233109	40233777	+	0	NA	Intergenic	Intergenic	-1299899	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_11878	chr6	116938877	116939339	+	0	NA	Intergenic	Intergenic	-222350	NM_178768	319776	Mm.133120	NM_178768		Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding
chipseq_peak_585	chr1	86111734	86112644	+	0	NA	promoter-TSS (NM_008311)	promoter-TSS (NM_008311)	-219	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding
chipseq_peak_13893	chr9	112436184	112436549	+	0	NA	Intergenic	Intergenic	179792	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_2332	chr11	45787334	45787774	+	0	NA	Intergenic	Intergenic	-20529	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA
chipseq_peak_7472	chr2	14339984	14340929	+	0	NA	Intergenic	Intergenic	-47942	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding
chipseq_peak_10860	chr5	103172723	103173004	+	0	NA	intron (NM_001310683, intron 2 of 13)	intron (NM_001310683, intron 2 of 13)	38471	NM_009158	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
chipseq_peak_1978	chr10	110392153	110392499	+	0	NA	Intergenic	Intergenic	-208324	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
chipseq_peak_10883	chr5	110927408	110928892	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	48347	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding
chipseq_peak_4034	chr13	109482993	109483415	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	158460	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_7505	chr2	23315023	23315403	+	0	NA	Intergenic	Intergenic	-6033	NM_008752	18232	Mm.131616	NM_008752	ENSMUSG00000069132	Nxph2	-	neurexophilin 2	protein-coding
chipseq_peak_4975	chr15	32690847	32691540	+	0	NA	3' UTR (NM_009154, exon 23 of 23)	3' UTR (NM_009154, exon 23 of 23)	-229530	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding
chipseq_peak_5284	chr15	69246348	69247199	+	0	NA	Intergenic	Intergenic	-23760	NR_130983	75076		NR_130983		4930504C09Rik	-	RIKEN cDNA 4930504C09 gene	ncRNA
chipseq_peak_7643	chr2	44622235	44623106	+	0	NA	intron (NM_172662, intron 6 of 10)	intron (NM_172662, intron 6 of 10)	238952	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_6922	chr18	65872408	65873027	+	0	NA	promoter-TSS (NM_175012)	promoter-TSS (NM_175012)	-769	NM_175012	225642	Mm.20298	NM_175012	ENSMUSG00000024517	Grp	BLP	gastrin releasing peptide	protein-coding
chipseq_peak_9564	chr4	17645066	17645376	+	0	NA	Intergenic	Intergenic	-208261	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_890	chr1	144176887	144177557	+	0	NA	intron (NM_153171, intron 1 of 5)	intron (NM_153171, intron 1 of 5)	150	NM_153171	246709	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding
chipseq_peak_12943	chr8	62843830	62844536	+	0	NA	Intergenic	Intergenic	-107049	NM_001252621	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding
chipseq_peak_3219	chr12	81820504	81821239	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	-39159	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnxl1	pecanex homolog (Drosophila)	protein-coding
chipseq_peak_2188	chr11	24184375	24184977	+	0	NA	Intergenic	Intergenic	103981	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding
chipseq_peak_6370	chr17	65346119	65347116	+	0	NA	intron (NM_001289485, intron 14 of 15)	RLTR22_Mur|LTR|ERVK	194165	NM_001289486	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding
chipseq_peak_13420	chr9	30207231	30207749	+	0	NA	Intergenic	Intergenic	-219839	NM_028874	102607	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding
chipseq_peak_12492	chr7	121473369	121473586	+	0	NA	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	81181	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chipseq_peak_12044	chr7	28277257	28277735	+	0	NA	promoter-TSS (NM_001177427)	promoter-TSS (NM_001177427)	-210	NM_001177427	434156	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding
chipseq_peak_10600	chr5	66412301	66413744	+	0	NA	intron (NM_001201414, intron 5 of 15)	intron (NM_001201414, intron 5 of 15)	-75357	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
chipseq_peak_6904	chr18	59361946	59362742	+	0	NA	intron (NM_001081328, intron 2 of 2)	intron (NM_001081328, intron 2 of 2)	187004	NM_001081328	78923	Mm.84007	NM_001081328		Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding
chipseq_peak_8009	chr2	97706736	97707478	+	0	NA	Intergenic	Intergenic	239450	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_9151	chr3	118702282	118702625	+	0	NA	intron (NM_170778, intron 3 of 22)	intron (NM_170778, intron 3 of 22)	140275	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding
chipseq_peak_8740	chr3	54827702	54828172	+	0	NA	Intergenic	Intergenic	-20146	NM_133231	170767	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding
chipseq_peak_5487	chr16	6735993	6737104	+	0	NA	intron (NM_021477, intron 4 of 16)	intron (NM_021477, intron 4 of 16)	-333287	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_11996	chr6	144695642	144696160	+	0	NA	Intergenic	Intergenic	23033	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA
chipseq_peak_12986	chr8	68830158	68830461	+	0	NA	TTS (NM_027590)	TTS (NM_027590)	36380	NM_027590	70885	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding
chipseq_peak_10011	chr4	87362184	87362496	+	0	NA	Intergenic	Intergenic	-131800	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
chipseq_peak_436	chr1	62139951	62140478	+	0	NA	intron (NM_001081050, intron 4 of 22)	intron (NM_001081050, intron 4 of 22)	501390	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
chipseq_peak_1413	chr10	29689517	29690131	+	0	NA	Intergenic	Intergenic	-153957	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding
chipseq_peak_13591	chr9	57906492	57906884	+	0	NA	Intergenic	Intergenic	-4298	NM_001122873	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding
chipseq_peak_10119	chr4	105203385	105203995	+	0	NA	intron (NM_080555, intron 2 of 5)	intron (NM_080555, intron 2 of 5)	46343	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding
chipseq_peak_1651	chr10	67482253	67482723	+	0	NA	Intergenic	Intergenic	-55381	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding
chipseq_peak_7542	chr2	34257117	34257495	+	0	NA	intron (NM_001290576, intron 2 of 7)	intron (NM_001290576, intron 2 of 7)	114739	NM_016768	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding
chipseq_peak_3022	chr12	58369587	58370390	+	0	NA	Intergenic	Intergenic	-100730	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
chipseq_peak_12107	chr7	51851318	51852514	+	0	NA	Intergenic	Intergenic	10351	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding
chipseq_peak_8813	chr3	65786366	65788312	+	0	NA	intron (NM_001166659, intron 9 of 12)	intron (NM_001166659, intron 9 of 12)	121111	NM_001037923	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding
chipseq_peak_12724	chr8	33436030	33436672	+	0	NA	Intergenic	MIRb|SINE|MIR	-47960	NR_033589	628431	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo
chipseq_peak_6736	chr18	33445490	33448274	+	0	NA	intron (NM_001267717, intron 3 of 4)	intron (NM_001267717, intron 3 of 4)	16752	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
chipseq_peak_6091	chr16	87292381	87293309	+	0	NA	Intergenic	Intergenic	-61340	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
chipseq_peak_7810	chr2	62496858	62498724	+	0	NA	Intergenic	Intergenic	-14138	NM_008100	14526	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding
chipseq_peak_6878	chr18	55957178	55957879	+	0	NA	Intergenic	Intergenic	-474604	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
chipseq_peak_5861	chr16	64391703	64393896	+	0	NA	Intergenic	Intergenic	86335	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding
chipseq_peak_6228	chr17	30506512	30508140	+	0	NA	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	68961	NM_172618	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding
chipseq_peak_11142	chr6	6515600	6516359	+	0	NA	Intergenic	Intergenic	62679	NM_009169	20422	Mm.2469	NM_009169		Shfm1	DSS1|Shfdg1|Shfg	split hand/foot malformation (ectrodactyly) type 1	protein-coding
chipseq_peak_7194	chr19	28426471	28427014	+	0	NA	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-251482	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_9882	chr4	71613330	71614366	+	0	NA	Intergenic	Intergenic	587045	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_11086	chr5	142857797	142858305	+	0	NA	Intergenic	Intergenic	37187	NM_001033312	231863	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding
chipseq_peak_13752	chr9	91115820	91117161	+	0	NA	Intergenic	Intergenic	249309	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding
chipseq_peak_2732	chr12	17063670	17064332	+	0	NA	Intergenic	Intergenic	-52274	NM_001201332	73667	Mm.159048	NM_001201332		2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding
chipseq_peak_10020	chr4	87928677	87929398	+	0	NA	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	104370	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	protein-coding
chipseq_peak_11924	chr6	136343851	136344286	+	0	NA	Intergenic	Intergenic	16529	NM_001142734	668137	Mm.417085	NM_001142734	ENSMUSG00000094973	Gm8994	B020013A22Rik|EG668137	predicted gene 8994	protein-coding
chipseq_peak_1118	chr1	177488358	177488914	+	0	NA	Intergenic	Intergenic	42815	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_3031	chr12	59238254	59238833	+	0	NA	Intergenic	Intergenic	-19060	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_270	chr1	41745895	41749595	+	0	NA	Intergenic	Intergenic	-566493	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_2301	chr11	40879627	40880079	+	0	NA	Intergenic	Intergenic	-124567	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding
chipseq_peak_3630	chr13	52346023	52346495	+	0	NA	Intergenic	Intergenic	184577	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding
chipseq_peak_4364	chr14	64545097	64545933	+	0	NA	Intergenic	Intergenic	-42600	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA
chipseq_peak_7040	chr18	84368697	84369381	+	0	NA	intron (NM_001033341, intron 4 of 8)	intron (NM_001033341, intron 4 of 8)	220465	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding
chipseq_peak_13481	chr9	41627482	41628006	+	0	NA	Intergenic	Intergenic	45818	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA
chipseq_peak_1948	chr10	108088480	108089598	+	0	NA	Intergenic	Intergenic	-73361	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding
chipseq_peak_1682	chr10	69500085	69500483	+	0	NA	Intergenic	Intergenic	-33424	NM_170729	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_1501	chr10	43185193	43185544	+	0	NA	Intergenic	Intergenic	10669	NR_102361	74530	Mm.415375	NM_172419	ENSMUSG00000045008	9030612E09Rik	-	RIKEN cDNA 9030612E09 gene	ncRNA
chipseq_peak_6656	chr18	23456939	23457638	+	0	NA	intron (NM_207650, intron 1 of 20)	intron (NM_207650, intron 1 of 20)	-40194	NM_001285810	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding
chipseq_peak_7455	chr2	11151830	11152313	+	0	NA	Intergenic	Intergenic	-20311	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding
chipseq_peak_12346	chr7	91841979	91844128	+	0	NA	intron (NM_011807, intron 4 of 22)	intron (NM_011807, intron 4 of 22)	-219341	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_10901	chr5	111394163	111394670	+	0	NA	Intergenic	Intergenic	-23750	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding
chipseq_peak_10503	chr5	53123373	53123843	+	0	NA	intron (NM_172710, intron 17 of 23)	intron (NM_172710, intron 17 of 23)	74255	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding
chipseq_peak_13124	chr8	99630800	99631654	+	0	NA	intron (NR_132435, intron 1 of 4)	intron (NR_132435, intron 1 of 4)	214553	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_8664	chr3	46727740	46728147	+	0	NA	Intergenic	Intergenic	172839	NR_105800	102465199		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA
chipseq_peak_8976	chr3	83997536	83997925	+	0	NA	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	42431	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding
chipseq_peak_10065	chr4	97810655	97811002	+	0	NA	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	33202	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
chipseq_peak_4878	chr15	20591483	20592202	+	0	NA	Intergenic	Intergenic	74908	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_6088	chr16	86859547	86860067	+	0	NA	Intergenic	Intergenic	-494378	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
chipseq_peak_13491	chr9	42183206	42184404	+	0	NA	non-coding (NR_040754, exon 7 of 7)	non-coding (NR_040754, exon 7 of 7)	25426	NR_040754	78194	Mm.251457	NR_040754		4930546K05Rik	-	RIKEN cDNA 4930546K05 gene	ncRNA
chipseq_peak_12243	chr7	76362545	76363859	+	0	NA	intron (NM_001199224, intron 5 of 22)	intron (NM_001199224, intron 5 of 22)	133315	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_5506	chr16	12010312	12010837	+	0	NA	intron (NM_001174086, intron 2 of 3)	intron (NM_001174086, intron 2 of 3)	26461	NM_001174086	72555	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding
chipseq_peak_496	chr1	70950006	70950336	+	0	NA	Intergenic	Intergenic	152801	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding
chipseq_peak_2919	chr12	45012608	45013561	+	0	NA	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	61399	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
chipseq_peak_5971	chr16	74202967	74203529	+	0	NA	intron (NM_175549, intron 2 of 27)	intron (NM_175549, intron 2 of 27)	138819	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_6082	chr16	85885250	85885585	+	0	NA	intron (NM_011782, intron 2 of 7)	intron (NM_011782, intron 2 of 7)	15708	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding
chipseq_peak_13847	chr9	105389073	105389641	+	0	NA	intron (NM_172461, intron 2 of 15)	intron (NM_172461, intron 2 of 15)	5930	NM_172461	208583	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding
chipseq_peak_11982	chr6	143862621	143864118	+	0	NA	intron (NM_001113559, intron 9 of 13)	intron (NM_001113559, intron 9 of 13)	-212081	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA
chipseq_peak_489	chr1	70753317	70754591	+	0	NA	intron (NM_177164, intron 3 of 3)	intron (NM_177164, intron 3 of 3)	28239	NM_001310658	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_8723	chr3	53799233	53800690	+	0	NA	Intergenic	Intergenic	63846	NM_026435	67890	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|ENSMUSG00000074598|Gm10726	ubiquitin-fold modifier 1	protein-coding
chipseq_peak_1993	chr10	111699819	111700557	+	0	NA	Intergenic	Intergenic	-105915	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA
chipseq_peak_5934	chr16	72512802	72513415	+	0	NA	Intergenic	Intergenic	-150041	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_5050	chr15	44362747	44363127	+	0	NA	Intergenic	Intergenic	-65174	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding
chipseq_peak_1917	chr10	105867483	105867931	+	0	NA	Intergenic	Intergenic	26228	NM_025602	52713	Mm.339224	NM_025602		Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding
chipseq_peak_9707	chr4	33496925	33499312	+	0	NA	intron (NM_011884, intron 14 of 15)	intron (NM_011884, intron 14 of 15)	60037	NR_106198	102465904		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA
chipseq_peak_4608	chr14	105295554	105296897	+	0	NA	intron (NM_001190989, intron 4 of 7)	intron (NM_001190989, intron 4 of 7)	37552	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding
chipseq_peak_1041	chr1	169949030	169949631	+	0	NA	TTS (NM_010476)	TTS (NM_010476)	19875	NM_010476	15490	Mm.12882	NM_010476	ENSMUSG00000026675	Hsd17b7	AI266814|ERG27	hydroxysteroid (17-beta) dehydrogenase 7	protein-coding
chipseq_peak_9895	chr4	73488995	73490403	+	0	NA	Intergenic	Intergenic	-84627	NM_001013393	433719	Mm.348294	NM_001013393	ENSMUSG00000066137	Gm11487	OTTMUSG00000001246	predicted gene 11487	protein-coding
chipseq_peak_959	chr1	158476005	158477025	+	0	NA	intron (NM_001205204, intron 2 of 22)	intron (NM_001205204, intron 2 of 22)	-29110	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA
chipseq_peak_7858	chr2	67263567	67264780	+	0	NA	Intergenic	Intergenic	90339	NM_001033477	383709	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding
chipseq_peak_2685	chr12	11215180	11216306	+	0	NA	Intergenic	Intergenic	-6795	NM_019544	56184	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding
chipseq_peak_6387	chr17	68591431	68592204	+	0	NA	intron (NM_177278, intron 14 of 20)	intron (NM_177278, intron 14 of 20)	-245319	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding
chipseq_peak_2021	chr10	116788347	116789318	+	0	NA	intron (NM_001033333, intron 19 of 24)	intron (NM_001033333, intron 19 of 24)	59579	NR_131036	75878	Mm.370607	NR_131036		4930579P08Rik	-	RIKEN cDNA 4930579P08 gene	ncRNA
chipseq_peak_5092	chr15	48302428	48303039	+	0	NA	intron (NM_001081391, intron 7 of 70)	intron (NM_001081391, intron 7 of 70)	489256	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
chipseq_peak_12640	chr8	12087601	12087883	+	0	NA	Intergenic	Intergenic	247221	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding
chipseq_peak_5895	chr16	68083596	68084612	+	0	NA	Intergenic	Intergenic	-463196	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_7255	chr19	43460042	43460506	+	0	NA	intron (NM_031396, intron 1 of 10)	Charlie22a|DNA|hAT-Charlie	19838	NM_031396	83674	Mm.329864	NM_031396	ENSMUSG00000025189	Cnnm1	AI846314|Acdp1|CLP-1	cyclin M1	protein-coding
chipseq_peak_8206	chr2	135541027	135541608	+	0	NA	Intergenic	Intergenic	41903	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA
chipseq_peak_1929	chr10	106375086	106378444	+	0	NA	Intergenic	Intergenic	-93545	NM_001205341	327814	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding
chipseq_peak_8123	chr2	115902948	115903902	+	0	NA	intron (NM_001159567, intron 9 of 12)	intron (NM_001159567, intron 9 of 12)	161196	NM_001159569	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding
chipseq_peak_9408	chr3	154945754	154946080	+	0	NA	intron (NM_177066, intron 11 of 24)	intron (NM_177066, intron 11 of 24)	109490	NM_177066	435766	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding
chipseq_peak_1006	chr1	164704776	164705673	+	0	NA	Intergenic	Intergenic	-91508	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding
chipseq_peak_7483	chr2	16355249	16355676	+	0	NA	promoter-TSS (NM_026162)	promoter-TSS (NM_026162)	-842	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding
chipseq_peak_13968	chrX	13070301	13071356	+	0	NA	promoter-TSS (NM_009481)	promoter-TSS (NM_009481)	-670	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding
chipseq_peak_8210	chr2	136301468	136301759	+	0	NA	intron (NM_172858, intron 1 of 9)	intron (NM_172858, intron 1 of 9)	86354	NM_172858	241656	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|6430627N20|Pak5	p21 protein (Cdc42/Rac)-activated kinase 7	protein-coding
chipseq_peak_8545	chr3	26845047	26845417	+	0	NA	intron (NM_029150, intron 5 of 10)	Charlie24|DNA|hAT-Charlie	207601	NM_029150	70862	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding
chipseq_peak_2236	chr11	30599720	30600126	+	0	NA	intron (NM_029344, intron 3 of 3)	intron (NM_029344, intron 3 of 3)	49473	NM_029344	75572	Mm.390319	NM_029344		Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding
chipseq_peak_133	chr1	25768746	25769446	+	0	NA	intron (NM_175642, intron 2 of 30)	intron (NM_175642, intron 2 of 30)	60611	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
chipseq_peak_82	chr1	21411291	21411984	+	0	NA	intron (NM_001310477, intron 10 of 12)	intron (NM_001310477, intron 10 of 12)	28081	NM_001113187	98582	Mm.326336	NM_001113187	ENSMUSG00000085079	Khdc1b	AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c	KH domain containing 1B	protein-coding
chipseq_peak_8932	chr3	80478223	80479369	+	0	NA	Intergenic	Intergenic	323995	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_2293	chr11	40546537	40546966	+	0	NA	Intergenic	Intergenic	145931	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding
chipseq_peak_13719	chr9	83597884	83598311	+	0	NA	3' UTR (NM_172507, exon 4 of 4)	3' UTR (NM_172507, exon 4 of 4)	49759	NM_172507	212531	Mm.491246	NM_172507		Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding
chipseq_peak_7759	chr2	58176855	58177712	+	0	NA	TTS (NR_045895)	TTS (NR_045895)	13309	NR_045895	100042926	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	OTTMUSG00000012675	predicted gene 13546	ncRNA
chipseq_peak_11469	chr6	47787685	47788213	+	0	NA	Intergenic	Intergenic	15703	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA
chipseq_peak_11061	chr5	136306242	136306974	+	0	NA	intron (NM_009986, intron 18 of 23)	intron (NM_009986, intron 18 of 23)	-61668	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding
chipseq_peak_3808	chr13	83715049	83715423	+	0	NA	Intergenic	Intergenic	-12870	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA
chipseq_peak_11738	chr6	101418109	101418538	+	0	NA	Intergenic	Intergenic	-40426	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
chipseq_peak_8764	chr3	56475673	56477260	+	0	NA	Intergenic	Intergenic	-292765	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_13502	chr9	43924994	43925265	+	0	NA	Intergenic	L1MEc|LINE|L1	-118255	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding
chipseq_peak_10135	chr4	111866361	111867242	+	0	NA	Intergenic	Intergenic	35995	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding
chipseq_peak_6712	chr18	30813033	30813728	+	0	NA	Intergenic	MIRb|SINE|MIR	503748	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_9549	chr4	15550269	15550980	+	0	NA	Intergenic	Intergenic	284804	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding
chipseq_peak_2878	chr12	39645751	39646728	+	0	NA	Intergenic	Intergenic	391137	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
chipseq_peak_14131	chrX	164373024	164373535	+	0	NA	promoter-TSS (NM_010216)	promoter-TSS (NM_010216)	-243	NM_001308489	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Figf	AI325264|VEGF-D|Vegfd	c-fos induced growth factor	protein-coding
chipseq_peak_7641	chr2	44575304	44576190	+	0	NA	intron (NM_172662, intron 7 of 10)	intron (NM_172662, intron 7 of 10)	285875	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_13030	chr8	82120429	82121358	+	0	NA	intron (NM_001297596, intron 24 of 24)	intron (NM_001297596, intron 24 of 24)	281693	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding
chipseq_peak_490	chr1	70790186	70790869	+	0	NA	intron (NM_177164, intron 3 of 3)	Lx9|LINE|L1	64812	NM_001310658	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_9909	chr4	75982759	75984024	+	0	NA	intron (NM_011211, intron 31 of 39)	intron (NM_011211, intron 31 of 39)	-705105	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_12770	chr8	40388755	40389287	+	0	NA	Intergenic	Intergenic	-34794	NM_178395	70546	Mm.34326	NM_178395		Zdhhc2	5730415P04Rik|6430583A19Rik	zinc finger, DHHC domain containing 2	protein-coding
chipseq_peak_10891	chr5	111029027	111029430	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	25084	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_7405	chr2	7551244	7551598	+	0	NA	Intergenic	L1M5|LINE|L1	-155223	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_12263	chr7	79649158	79649368	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-10933	NM_029835	77011	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding
chipseq_peak_11899	chr6	120858312	120858844	+	0	NA	intron (NM_153516, intron 2 of 6)	intron (NM_153516, intron 2 of 6)	22348	NM_153516	94044	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding
chipseq_peak_5983	chr16	74597406	74598989	+	0	NA	Intergenic	Intergenic	-187285	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_7666	chr2	47424773	47425334	+	0	NA	Intergenic	Intergenic	-1389056	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_6849	chr18	54497977	54498371	+	0	NA	Intergenic	Intergenic	75879	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA
chipseq_peak_11515	chr6	54802386	54803409	+	0	NA	Intergenic	Intergenic	-14019	NM_199143	387524	Mm.286149	NM_199143		Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding
chipseq_peak_13616	chr9	60841913	60842446	+	0	NA	intron (NM_028283, intron 2 of 18)	intron (NM_028283, intron 2 of 18)	47631	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
chipseq_peak_5094	chr15	48654501	48654858	+	0	NA	intron (NM_001081391, intron 2 of 70)	intron (NM_001081391, intron 2 of 70)	137310	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
chipseq_peak_6157	chr17	4279264	4279809	+	0	NA	Intergenic	Intergenic	-157434	NR_045462	78043	Mm.398313	NR_045462		4930548J01Rik	1700113K09Rik	RIKEN cDNA 4930548J01 gene	ncRNA
chipseq_peak_7857	chr2	67211942	67212256	+	0	NA	Intergenic	Lx9|LINE|L1	38265	NM_001033477	383709	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding
chipseq_peak_8263	chr2	141522117	141522469	+	0	NA	intron (NM_001013802, intron 6 of 18)	intron (NM_001013802, intron 6 of 18)	-850817	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_9734	chr4	36742393	36742790	+	0	NA	intron (NM_001165999, intron 1 of 7)	intron (NM_001165999, intron 1 of 7)	-23628	NM_001166000	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_6671	chr18	24750953	24751661	+	0	NA	intron (NM_175276, intron 1 of 26)	intron (NM_175276, intron 1 of 26)	42684	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding
chipseq_peak_9287	chr3	140142019	140142478	+	0	NA	Intergenic	Intergenic	113999	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA
chipseq_peak_12458	chr7	114499241	114499675	+	0	NA	intron (NM_011055, intron 4 of 15)	intron (NM_011055, intron 4 of 15)	63514	NM_177382	244209	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding
chipseq_peak_3709	chr13	76258697	76259252	+	0	NA	Intergenic	Intergenic	-125987	NM_030174	78771	Mm.316249	NM_030174		Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding
chipseq_peak_11215	chr6	14344008	14344462	+	0	NA	Intergenic	Intergenic	411039	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding
chipseq_peak_11095	chr5	144081925	144082477	+	0	NA	Intergenic	Intergenic	-18235	NM_001081109	231876	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding
chipseq_peak_11175	chr6	12380939	12381535	+	0	NA	exon (NM_001164805, exon 12 of 27)	exon (NM_001164805, exon 12 of 27)	-271657	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo
chipseq_peak_1771	chr10	90151537	90152256	+	0	NA	intron (NM_001128086, intron 8 of 24)	intron (NM_001128086, intron 8 of 24)	278387	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_11125	chr5	149926918	149927343	+	0	NA	Intergenic	Intergenic	79383	NR_045758	70969	Mm.78499	NR_045758	ENSMUSG00000107214	4930500F04Rik	4931407C17Rik	RIKEN cDNA 4930500F04 gene	ncRNA
chipseq_peak_10601	chr5	66415434	66416144	+	0	NA	intron (NM_001201414, intron 5 of 15)	intron (NM_001201414, intron 5 of 15)	-78124	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
chipseq_peak_4468	chr14	80990241	80990648	+	0	NA	Intergenic	Intergenic	990142	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_8558	chr3	28524544	28524911	+	0	NA	intron (NM_001163007, intron 4 of 31)	intron (NM_001163007, intron 4 of 31)	104784	NR_130342	100628591		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA
chipseq_peak_12095	chr7	50153489	50154018	+	0	NA	intron (NM_001037906, intron 4 of 19)	intron (NM_001037906, intron 4 of 19)	178403	NM_001037906	338352	Mm.383528	NM_001037906	ENSMUSG00000055409	Nell1	B230343H07Rik|l7R6	NEL-like 1	protein-coding
chipseq_peak_12529	chr7	129652987	129653839	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	61550	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding
chipseq_peak_14143	chrX	167096495	167097089	+	0	NA	Intergenic	L1ME1|LINE|L1	-26422	NM_001101606	667794	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding
chipseq_peak_12887	chr8	55023332	55028003	+	0	NA	intron (NM_001253756, intron 1 of 5)	intron (NM_001253756, intron 1 of 5)	70939	NM_153581	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_2760	chr12	26665556	26666875	+	0	NA	Intergenic	B1F2|SINE|Alu	197000	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
chipseq_peak_11099	chr5	146338052	146338441	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	-46760	NM_145155	245880	Mm.472750	NM_145155		Wasf3	Scar3|Wave3	WAS protein family, member 3	protein-coding
chipseq_peak_11457	chr6	46908737	46909587	+	0	NA	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-335234	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_9321	chr3	143743637	143744441	+	0	NA	Intergenic	Intergenic	-31896	NR_040405	621809	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA
chipseq_peak_11385	chr6	36931122	36932018	+	0	NA	intron (NM_001081206, intron 24 of 33)	intron (NM_001081206, intron 24 of 33)	-120209	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_1392	chr10	27802159	27802981	+	0	NA	Intergenic	Intergenic	-185628	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding
chipseq_peak_13298	chr9	9817348	9817880	+	0	NA	intron (NM_001170787, intron 15 of 24)	intron (NM_001170787, intron 15 of 24)	-76817	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_14040	chrX	76780056	76780657	+	0	NA	Intergenic	Intergenic	-177432	NM_001201395	74987	Mm.107996	NM_001201395	ENSMUSG00000079525	Cldn34d	4930468A15Rik	claudin 34D	protein-coding
chipseq_peak_9065	chr3	107065165	107067540	+	0	NA	Intergenic	Intergenic	26848	NR_033498	229694	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA
chipseq_peak_10398	chr5	37064729	37065409	+	0	NA	intron (NM_178394, intron 1 of 12)	intron (NM_178394, intron 1 of 12)	14212	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding
chipseq_peak_8709	chr3	53309728	53311404	+	0	NA	Intergenic	Intergenic	152692	NM_172501	212114	Mm.85744	NM_172501		Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding
chipseq_peak_10053	chr4	94901817	94902140	+	0	NA	Intergenic	Intergenic	26865	NM_027089	67753	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding
chipseq_peak_8335	chr2	156950465	156951540	+	0	NA	intron (NM_180956, intron 3 of 16)	intron (NM_180956, intron 3 of 16)	41109	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding
chipseq_peak_12867	chr8	54594627	54595109	+	0	NA	Intergenic	Intergenic	-5913	NM_133711	69281	Mm.45833	NM_133711	ENSMUSG00000031518	Spata4	1700001N01Rik|Srg2|TSARG2	spermatogenesis associated 4	protein-coding
chipseq_peak_10129	chr4	109733743	109734208	+	0	NA	intron (NM_007983, intron 4 of 18)	L1MA5|LINE|L1	57348	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding
chipseq_peak_2379	chr11	64640199	64641274	+	0	NA	Intergenic	Intergenic	-204062	NR_028445	654805	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA
chipseq_peak_10142	chr4	118969577	118970542	+	0	NA	Intergenic	Intergenic	8092	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding
chipseq_peak_9980	chr4	82542943	82543620	+	0	NA	Intergenic	Intergenic	-37502	NM_008687	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding
chipseq_peak_5833	chr16	63118073	63120106	+	0	NA	Intergenic	Intergenic	264782	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
chipseq_peak_5504	chr16	11879139	11879608	+	0	NA	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-21991	NR_033509	791359	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	ENSMUSG00000055015	predicted gene 9961	ncRNA
chipseq_peak_10409	chr5	39348636	39349063	+	0	NA	Intergenic	Intergenic	254725	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA
chipseq_peak_11362	chr6	34075369	34076625	+	0	NA	intron (NM_028886, intron 10 of 19)	intron (NM_028886, intron 10 of 19)	46549	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding
chipseq_peak_2237	chr11	32027137	32028202	+	0	NA	intron (NM_001290680, intron 3 of 4)	intron (NM_001290680, intron 3 of 4)	26392	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding
chipseq_peak_7019	chr18	78530948	78531522	+	0	NA	intron (NM_207651, intron 2 of 21)	intron (NM_207651, intron 2 of 21)	65715	NM_030683	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
chipseq_peak_536	chr1	76490302	76491664	+	0	NA	intron (NR_038012, intron 1 of 4)	intron (NR_038012, intron 1 of 4)	1850	NR_038012	620079	Mm.378379	NR_038012	ENSMUSG00000100553	Gm17751	-	predicted gene, 17751	ncRNA
chipseq_peak_6024	chr16	76848330	76849527	+	0	NA	Intergenic	MER68B|LTR|ERVL	161953	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA
chipseq_peak_4994	chr15	36960102	36960644	+	0	NA	Intergenic	Intergenic	47029	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding
chipseq_peak_9318	chr3	143322776	143323480	+	0	NA	Intergenic	Intergenic	80073	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA
chipseq_peak_6678	chr18	26294368	26295425	+	0	NA	Intergenic	Intergenic	-540913	NM_001146294	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
chipseq_peak_535	chr1	76484084	76484520	+	0	NA	Intergenic	Intergenic	-4831	NR_038013	620079	Mm.378379	NR_038012	ENSMUSG00000100553	Gm17751	-	predicted gene, 17751	ncRNA
chipseq_peak_3891	chr13	93004115	93004475	+	0	NA	Intergenic	Intergenic	-69009	NR_036451	100502942	Mm.441946	NM_177623		Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA
chipseq_peak_6472	chr17	82860084	82860588	+	0	NA	Intergenic	Intergenic	217889	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
chipseq_peak_2403	chr11	68745412	68746149	+	0	NA	intron (NM_175260, intron 5 of 40)	intron (NM_175260, intron 5 of 40)	53865	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding
chipseq_peak_8119	chr2	115090499	115090784	+	0	NA	Intergenic	Intergenic	253639	NR_040516	78193	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA
chipseq_peak_13735	chr9	86205086	86205447	+	0	NA	Intergenic	Intergenic	259650	NM_027394	70348	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding
chipseq_peak_847	chr1	139008599	139009019	+	0	NA	intron (NM_181347, intron 1 of 20)	Lx7|LINE|L1	31152	NR_108103	78229	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA
chipseq_peak_6763	chr18	40331919	40333141	+	0	NA	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	74169	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding
chipseq_peak_8882	chr3	75557623	75558826	+	0	NA	intron (NM_009250, intron 1 of 8)	intron (NM_009250, intron 1 of 8)	691	NM_009250	20713	Mm.41560	NM_009250		Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding
chipseq_peak_4408	chr14	74659205	74659857	+	0	NA	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	18691	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding
chipseq_peak_7193	chr19	28393904	28395789	+	0	NA	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-283378	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_942	chr1	154520764	154521427	+	0	NA	intron (NM_009782, intron 7 of 46)	L1MC1|LINE|L1	204825	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
chipseq_peak_7846	chr2	66022939	66023714	+	0	NA	3' UTR (NM_001290666, exon 5 of 5)	3' UTR (NM_001290666, exon 5 of 5)	91461	NM_001290665	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding
chipseq_peak_4889	chr15	21357394	21358118	+	0	NA	intron (NM_001008420, intron 2 of 11)	intron (NM_001008420, intron 2 of 11)	246304	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
chipseq_peak_2675	chr12	8619462	8620959	+	0	NA	Intergenic	Intergenic	-21144	NM_177802	328059	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding
chipseq_peak_5526	chr16	21714494	21714805	+	0	NA	Intergenic	Intergenic	-19984	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding
chipseq_peak_9661	chr4	28895214	28896137	+	0	NA	intron (NM_010141, intron 5 of 16)	intron (NM_010141, intron 5 of 16)	82530	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_8023	chr2	101160779	101161584	+	0	NA	Intergenic	Intergenic	-463567	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
chipseq_peak_5601	chr16	33871253	33871608	+	0	NA	intron (NM_001145884, intron 3 of 14)	intron (NM_001145884, intron 3 of 14)	41765	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding
chipseq_peak_6618	chr18	19603025	19604758	+	0	NA	Intergenic	Intergenic	398206	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_10296	chr5	13927476	13927892	+	0	NA	Intergenic	Intergenic	-97592	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding
chipseq_peak_3640	chr13	54292547	54292827	+	0	NA	Intergenic	Intergenic	-78662	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding
chipseq_peak_3645	chr13	56265673	56265983	+	0	NA	Intergenic	Intergenic	-13665	NM_010896	18014	Mm.266665	NM_010896	ENSMUSG00000048904	Neurog1	AKA|Math4C|Neurod3|bHLHa6|ngn1	neurogenin 1	protein-coding
chipseq_peak_2775	chr12	27977801	27979236	+	0	NA	Intergenic	Intergenic	569819	NM_001177964	68511	Mm.310284	NM_001177964	ENSMUSG00000020633	Dcdc2c	1110015M06Rik	doublecortin domain containing 2C	protein-coding
chipseq_peak_792	chr1	130295971	130296518	+	0	NA	Intergenic	Intergenic	126755	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding
chipseq_peak_1442	chr10	33019809	33020164	+	0	NA	Intergenic	Intergenic	-63497	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding
chipseq_peak_9627	chr4	24924759	24925078	+	0	NA	Intergenic	Intergenic	26835	NM_026742	68493	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding
chipseq_peak_3406	chr13	7517925	7518556	+	0	NA	Intergenic	Intergenic	-684626	NM_052977	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
chipseq_peak_9278	chr3	139024846	139025388	+	0	NA	intron (NM_145544, intron 2 of 13)	intron (NM_145544, intron 2 of 13)	50084	NM_001286759	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding
chipseq_peak_11225	chr6	16731501	16731795	+	0	NA	Intergenic	Intergenic	166793	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding
chipseq_peak_13184	chr8	109903041	109904477	+	0	NA	intron (NM_001122594, intron 3 of 18)	intron (NM_001122594, intron 3 of 18)	35156	NM_001122594	244650	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding
chipseq_peak_12215	chr7	73628090	73628493	+	0	NA	Intergenic	Intergenic	58272	NR_033604	244061	Mm.484605	NR_033604		Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo
chipseq_peak_5099	chr15	50081634	50083056	+	0	NA	Intergenic	IMPB_01|Satellite|Satellite	806704	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_7602	chr2	43781005	43788492	+	0	NA	intron (NM_001301832, intron 2 of 14)	intron (NM_001301832, intron 2 of 14)	35924	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_9332	chr3	145759796	145760044	+	0	NA	intron (NM_026993, intron 1 of 5)	intron (NM_026993, intron 1 of 5)	1228	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding
chipseq_peak_11480	chr6	50009732	50010217	+	0	NA	Intergenic	Intergenic	-100267	NM_001164734	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding
chipseq_peak_9869	chr4	70278068	70279312	+	0	NA	intron (NM_001313762, intron 18 of 33)	L1MB8|LINE|L1	131745	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding
chipseq_peak_8086	chr2	112196912	112197316	+	0	NA	Intergenic	Intergenic	41216	NM_001011802	258022	Mm.377330	NM_001011802	ENSMUSG00000049758	Olfr1318	MOR245-16	olfactory receptor 1318	protein-coding
chipseq_peak_12040	chr7	24506523	24507309	+	0	NA	promoter-TSS (NM_001290461)	promoter-TSS (NM_001290461)	-171	NM_146183	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding
chipseq_peak_10357	chr5	21639538	21640048	+	0	NA	intron (NM_177076, intron 1 of 19)	intron (NM_177076, intron 1 of 19)	5812	NM_177076	320118	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding
chipseq_peak_12182	chr7	66465119	66465801	+	0	NA	Intergenic	Intergenic	-37983	NM_053080	56847	Mm.140988	NM_053080	ENSMUSG00000015134	Aldh1a3	ALDH6|RALDH3|V1	aldehyde dehydrogenase family 1, subfamily A3	protein-coding
chipseq_peak_1059	chr1	172751224	172752756	+	0	NA	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	53934	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding
chipseq_peak_7256	chr19	43689400	43689843	+	0	NA	promoter-TSS (NM_053103)	promoter-TSS (NM_053103)	-68	NM_053103	93685	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
chipseq_peak_4165	chr14	16178201	16178707	+	0	NA	Intergenic	Intergenic	-70860	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding
chipseq_peak_2856	chr12	37492566	37492800	+	0	NA	intron (NM_178767, intron 12 of 12)	intron (NM_178767, intron 12 of 12)	251044	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding
chipseq_peak_1580	chr10	54011885	54012419	+	0	NA	intron (NM_008548, intron 5 of 12)	L1_Rod|LINE|L1	63644	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding
chipseq_peak_11521	chr6	55564913	55566523	+	0	NA	Intergenic	Intergenic	113740	NM_001025372	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding
chipseq_peak_1122	chr1	177576464	177577286	+	0	NA	Intergenic	ORSL-2b|DNA|hAT-Tip100	66068	NR_037994	75589	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA
chipseq_peak_7662	chr2	47091619	47092978	+	0	NA	Intergenic	Intergenic	1395693	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
chipseq_peak_7896	chr2	74147275	74147601	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	160279	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA
chipseq_peak_3080	chr12	66309294	66310249	+	0	NA	Intergenic	Intergenic	-25370	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding
chipseq_peak_8021	chr2	99793952	99794480	+	0	NA	Intergenic	Intergenic	-1830532	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
chipseq_peak_361	chr1	55910820	55911701	+	0	NA	Intergenic	Intergenic	-19981	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
chipseq_peak_12359	chr7	92367012	92367629	+	0	NA	intron (NM_011807, intron 14 of 22)	intron (NM_011807, intron 14 of 22)	132350	NM_001243047	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_11428	chr6	42247918	42248399	+	0	NA	intron (NM_029555, intron 5 of 7)	intron (NM_029555, intron 5 of 7)	2223	NM_029555	76263	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding
chipseq_peak_9727	chr4	35969455	35970172	+	0	NA	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-124609	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_8661	chr3	46334285	46334879	+	0	NA	Intergenic	Intergenic	113359	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding
chipseq_peak_12354	chr7	92264451	92265360	+	0	NA	intron (NM_001243047, intron 1 of 10)	intron (NM_001243047, intron 1 of 10)	29935	NM_001243047	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_1450	chr10	35761275	35761725	+	0	NA	Intergenic	Intergenic	-745307	NM_001253355	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chipseq_peak_814	chr1	133063125	133063663	+	0	NA	intron (NM_001099276, intron 1 of 32)	L1ME2|LINE|L1	17382	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding
chipseq_peak_10264	chr5	8145355	8145834	+	0	NA	exon (NM_001098225, exon 11 of 30)	exon (NM_001098225, exon 11 of 30)	89052	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding
chipseq_peak_2320	chr11	42609203	42609770	+	0	NA	intron (NM_008070, intron 9 of 9)	MIR3|SINE|MIR	189729	NM_008070	14401	Mm.338723	NM_008070		Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding
chipseq_peak_3187	chr12	76117783	76118235	+	0	NA	Intergenic	Intergenic	59250	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding
chipseq_peak_7917	chr2	77804760	77805102	+	0	NA	intron (NM_178723, intron 1 of 9)	L3|LINE|CR1	11885	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding
chipseq_peak_2238	chr11	32157853	32158728	+	0	NA	Intergenic	Intergenic	41989	NM_001134458	16199	Mm.384	NM_008374	ENSMUSG00000020279	Il9r	-	interleukin 9 receptor	protein-coding
chipseq_peak_9955	chr4	79733012	79733561	+	0	NA	Intergenic	L1M1|LINE|L1	-1100927	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_8768	chr3	56647416	56648172	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-464093	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_597	chr1	89007566	89008101	+	0	NA	Intergenic	Tigger17b|DNA|TcMar-Tigger	-8280	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA
chipseq_peak_3380	chr13	5242822	5243184	+	0	NA	Intergenic	Intergenic	615089	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
chipseq_peak_13837	chr9	103867461	103868167	+	0	NA	Intergenic	Intergenic	-105977	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding
chipseq_peak_138	chr1	26283174	26283570	+	0	NA	Intergenic	Intergenic	404088	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding
chipseq_peak_8975	chr3	83486135	83486916	+	0	NA	Intergenic	Intergenic	87593	NR_036591	69460	Mm.389464	NR_036591	ENSMUSG00000101334	1700028M03Rik	-	RIKEN cDNA 1700028M03 gene	ncRNA
chipseq_peak_7415	chr2	7825462	7826659	+	0	NA	Intergenic	Intergenic	-429862	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_7239	chr19	37530064	37532310	+	0	NA	Intergenic	Intergenic	-19231	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding
chipseq_peak_10492	chr5	50276267	50276507	+	0	NA	Intergenic	Intergenic	23625	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
chipseq_peak_6506	chr17	88817652	88818015	+	0	NA	Intergenic	Intergenic	-25857	NM_013582	16867	Mm.1644	NM_013582	ENSMUSG00000024107	Lhcgr	Gpcr19-rs1|LH-R|Lhr	luteinizing hormone/choriogonadotropin receptor	protein-coding
chipseq_peak_5145	chr15	54478547	54480056	+	0	NA	Intergenic	Intergenic	68527	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding
chipseq_peak_6661	chr18	23644593	23645327	+	0	NA	intron (NM_207650, intron 16 of 20)	intron (NM_207650, intron 16 of 20)	107345	NR_126066	100502834	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	OTTMUSG00000028454	predicted gene 15972	ncRNA
chipseq_peak_11003	chr5	129412183	129412532	+	0	NA	Intergenic	Intergenic	-88874	NM_172276	231769	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding
chipseq_peak_14072	chrX	132121762	132123134	+	0	NA	Intergenic	L1_Mus1|LINE|L1	1566545	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding
chipseq_peak_7806	chr2	62457528	62458793	+	0	NA	Intergenic	Intergenic	25493	NM_008100	14526	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding
chipseq_peak_7796	chr2	61803608	61804615	+	0	NA	promoter-TSS (NM_009322)	promoter-TSS (NM_009322)	-342	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding
chipseq_peak_3290	chr12	95641957	95642795	+	0	NA	Intergenic	Intergenic	-49850	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chipseq_peak_3568	chr13	43583153	43584024	+	0	NA	Intergenic	Intergenic	-23397	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding
chipseq_peak_5108	chr15	50959231	50959613	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-69381	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_709	chr1	111017631	111017937	+	0	NA	Intergenic	Intergenic	-40412	NM_001081386	227485	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding
chipseq_peak_939	chr1	153747804	153748378	+	0	NA	Intergenic	Intergenic	-1335	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding
chipseq_peak_8766	chr3	56504392	56505065	+	0	NA	Intergenic	Intergenic	-321027	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_5112	chr15	51139541	51139880	+	0	NA	Intergenic	Intergenic	-249669	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_6106	chr16	90622038	90622409	+	0	NA	Intergenic	Intergenic	105148	NM_025642	66578	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein homolog A (S. pombe)	protein-coding
chipseq_peak_1058	chr1	172742897	172743331	+	0	NA	Intergenic	Intergenic	45058	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding
chipseq_peak_6561	chr18	6512737	6513811	+	0	NA	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	2834	NM_007935	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding
chipseq_peak_12240	chr7	76053947	76054973	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-175427	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_5850	chr16	63965314	63968109	+	0	NA	Intergenic	Intergenic	-102554	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_2814	chr12	33014333	33014727	+	0	NA	Intergenic	Intergenic	60344	NM_198710	19027	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding
chipseq_peak_1900	chr10	103129343	103130167	+	0	NA	intron (NM_001163559, intron 23 of 25)	intron (NM_001163559, intron 23 of 25)	-100978	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding
chipseq_peak_1088	chr1	176980296	176981225	+	0	NA	intron (NM_029756, intron 16 of 17)	intron (NM_029756, intron 16 of 17)	-144627	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_7834	chr2	65620367	65622506	+	0	NA	Intergenic	Intergenic	-49009	NM_001099298	110876	Mm.220329	NM_001099298	ENSMUSG00000075318	Scn2a1	6430408L10|A230052E19Rik|Nav1.2|Scn2a	sodium channel, voltage-gated, type II, alpha 1	protein-coding
chipseq_peak_7346	chr2	3726613	3727210	+	0	NA	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	13453	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding
chipseq_peak_12296	chr7	89192934	89193774	+	0	NA	intron (NM_028343, intron 6 of 14)	intron (NM_028343, intron 6 of 14)	145433	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding
chipseq_peak_4485	chr14	84547086	84547997	+	0	NA	Intergenic	Intergenic	-71117	NR_015539	319903	Mm.440481	NR_015539		9630013A20Rik	-	RIKEN cDNA 9630013A20 gene	ncRNA
chipseq_peak_308	chr1	47288456	47288714	+	0	NA	Intergenic	Intergenic	178540	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_675	chr1	104225775	104227780	+	0	NA	Intergenic	Intergenic	-542042	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_3780	chr13	82912895	82913616	+	0	NA	Intergenic	Intergenic	-214922	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_8618	chr3	39585202	39588016	+	0	NA	Intergenic	L1M4|LINE|L1	699669	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT tumor suppressor homolog 4 (Drosophila)	protein-coding
chipseq_peak_10188	chr4	131324036	131325445	+	0	NA	Intergenic	Intergenic	-314266	NR_130167	77835	Mm.348412	NR_130167	ENSMUSG00000086262	A930031H19Rik	A930004I12Rik	RIKEN cDNA A930031H19 gene	ncRNA
chipseq_peak_305	chr1	47261618	47262251	+	0	NA	Intergenic	Intergenic	205191	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_10745	chr5	83890787	83891259	+	0	NA	Intergenic	Intergenic	526359	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_8982	chr3	84701467	84701941	+	0	NA	intron (NM_177260, intron 6 of 6)	intron (NM_177260, intron 6 of 6)	35512	NM_177260	320782	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding
chipseq_peak_2102	chr10	126935707	126936325	+	0	NA	Intergenic	Intergenic	-34645	NM_026858	68876	Mm.276769	NM_026858	ENSMUSG00000025436	Xrcc6bp1	1110068E08Rik|2410012H02Rik	XRCC6 binding protein 1	protein-coding
chipseq_peak_779	chr1	128003909	128004561	+	0	NA	intron (NM_001285945, intron 8 of 20)	intron (NM_001285945, intron 8 of 20)	98236	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding
chipseq_peak_6406	chr17	70363179	70364463	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-60971	NM_027712	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding
chipseq_peak_6794	chr18	45557844	45558480	+	0	NA	intron (NM_001312905, intron 2 of 10)	intron (NM_001312905, intron 2 of 10)	-1992	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding
chipseq_peak_9919	chr4	76621075	76622651	+	0	NA	intron (NM_011211, intron 9 of 39)	intron (NM_011211, intron 9 of 39)	-1343577	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_11016	chr5	131458005	131458570	+	0	NA	intron (NM_177047, intron 13 of 18)	intron (NM_177047, intron 13 of 18)	-150765	NM_145218	212996	Mm.299204	NM_145218		Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding
chipseq_peak_12136	chr7	55338017	55338883	+	0	NA	Intergenic	Intergenic	-429734	NM_001310740	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding
chipseq_peak_8296	chr2	143093732	143094325	+	0	NA	Intergenic	Intergenic	15536	NM_020595	57329	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding
chipseq_peak_9095	chr3	114987133	114987927	+	0	NA	intron (NM_001286750, intron 1 of 5)	intron (NM_001286750, intron 1 of 5)	82895	NM_001286750	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding
chipseq_peak_7537	chr2	33811365	33811692	+	0	NA	non-coding (NR_045729, exon 3 of 3)	non-coding (NR_045729, exon 3 of 3)	5712	NR_045729	320482	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA
chipseq_peak_12795	chr8	44373371	44374321	+	0	NA	Intergenic	B4A|SINE|B4	-576362	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chipseq_peak_13461	chr9	39070631	39070987	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	7934	NM_146438	258430	Mm.271358	NM_146438	ENSMUSG00000048501	Olfr938	MOR171-25	olfactory receptor 938	protein-coding
chipseq_peak_10917	chr5	112321034	112321428	+	0	NA	Intergenic	Intergenic	-5138	NM_018783	54723	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding
chipseq_peak_9307	chr3	142275077	142275403	+	0	NA	intron (NM_019808, intron 8 of 12)	intron (NM_019808, intron 8 of 12)	-106012	NM_001277216	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding
chipseq_peak_1559	chr10	51657369	51657660	+	0	NA	Intergenic	Intergenic	-20246	NM_001159389	320995	Mm.109190	NM_177306	ENSMUSG00000019900	Rfx6	4930572O07Rik|Rfxdc1	regulatory factor X, 6	protein-coding
chipseq_peak_6175	chr17	9068943	9069583	+	0	NA	Intergenic	Intergenic	80930	NM_025851	66931	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding
chipseq_peak_5565	chr16	26826464	26827752	+	0	NA	Intergenic	Intergenic	-71606	NR_105063	100504628	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA
chipseq_peak_4278	chr14	46766898	46767438	+	0	NA	intron (NM_028222, intron 4 of 7)	intron (NM_028222, intron 4 of 7)	6627	NM_028222	72391	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding
chipseq_peak_299	chr1	45919800	45920070	+	0	NA	intron (NM_016917, intron 3 of 7)	intron (NM_016917, intron 3 of 7)	5659	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding
chipseq_peak_12582	chr8	6164725	6166850	+	0	NA	Intergenic	Intergenic	-1060555	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_5579	chr16	28894479	28895187	+	0	NA	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	34865	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding
chipseq_peak_14153	chrY	90803564	90806283	+	0	NA	intron (NM_133362, intron 2 of 2)	L1_Mm|LINE|L1	19481	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding
chipseq_peak_12669	chr8	17152859	17153952	+	0	NA	intron (NM_053171, intron 2 of 69)	(TC)n|Simple_repeat|Simple_repeat	381980	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
chipseq_peak_5617	chr16	37565413	37567039	+	0	NA	intron (NM_001042499, intron 5 of 7)	intron (NM_001042499, intron 5 of 7)	-13927	NM_013547	15233	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding
chipseq_peak_13027	chr8	81027974	81028511	+	0	NA	Intergenic	Intergenic	-13336	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding
chipseq_peak_10553	chr5	60769517	60769902	+	0	NA	Intergenic	Intergenic	-783707	NR_040683	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA
chipseq_peak_454	chr1	64706657	64706942	+	0	NA	intron (NM_001097644, intron 3 of 9)	intron (NM_001097644, intron 3 of 9)	15454	NM_001097644	227210	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding
chipseq_peak_2701	chr12	12709162	12709553	+	0	NA	Intergenic	Intergenic	232479	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	protein-coding
chipseq_peak_2371	chr11	60537311	60537823	+	0	NA	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-116	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB, alkylation repair homolog 5 (E. coli)	protein-coding
chipseq_peak_12543	chr7	132407831	132408390	+	0	NA	Intergenic	L1M5|LINE|L1	-90955	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding
chipseq_peak_12852	chr8	52444336	52444811	+	0	NA	Intergenic	Lx10|LINE|L1	-1067129	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding
chipseq_peak_13129	chr8	100124515	100124829	+	0	NA	Intergenic	Intergenic	707998	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_8585	chr3	32692343	32692891	+	0	NA	Intergenic	Intergenic	-15929	NM_019673	56456	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding
chipseq_peak_9970	chr4	80866023	80866440	+	0	NA	Intergenic	Intergenic	32018	NM_001282014	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_12883	chr8	54912313	54913446	+	0	NA	intron (NM_001253754, intron 1 of 6)	intron (NM_001253754, intron 1 of 6)	-41849	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_5739	chr16	49960058	49962127	+	0	NA	Intergenic	Intergenic	-19368	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA
chipseq_peak_12371	chr7	93694751	93695111	+	0	NA	Intergenic	Intergenic	615052	NM_021427	58238	Mm.113787	NM_021427		Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding
chipseq_peak_10637	chr5	71248392	71250614	+	0	NA	Intergenic	Intergenic	-153654	NM_008066	14395	Mm.5304	NM_008066		Gabra2	C630048P16Rik|Gabra-2	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2	protein-coding
chipseq_peak_47	chr1	15333841	15335094	+	0	NA	intron (NM_001098528, intron 1 of 1)	intron (NM_001098528, intron 1 of 1)	22015	NM_001098528	98741	Mm.156081	NM_001033195		Kcnb2	9630047L19Rik|BB130875|Kv2.2	potassium voltage gated channel, Shab-related subfamily, member 2	protein-coding
chipseq_peak_8336	chr2	157296266	157296721	+	0	NA	intron (NM_019642, intron 6 of 16)	intron (NM_019642, intron 6 of 16)	-16944	NM_001039557	629499	Mm.384235	NM_001039557	ENSMUSG00000074627	Mroh8	4922505G16Rik	maestro heat-like repeat family member 8	protein-coding
chipseq_peak_1960	chr10	109326352	109327862	+	0	NA	Intergenic	Intergenic	-316132	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding
chipseq_peak_6718	chr18	31179173	31180559	+	0	NA	intron (NM_009065, intron 3 of 4)	MIRc|SINE|MIR	137262	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_9152	chr3	118773928	118774986	+	0	NA	intron (NM_170778, intron 4 of 22)	intron (NM_170778, intron 4 of 22)	212279	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding
chipseq_peak_7869	chr2	68020307	68020671	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-84183	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding
chipseq_peak_4078	chr13	113373992	113374456	+	0	NA	Intergenic	Intergenic	128620	NR_045501	70917	Mm.491036	NR_045501		4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA
chipseq_peak_3820	chr13	84344548	84345943	+	0	NA	Intergenic	Intergenic	122949	NR_029419	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
chipseq_peak_13003	chr8	76361634	76362111	+	0	NA	Intergenic	Intergenic	538301	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
chipseq_peak_13612	chr9	60264893	60265333	+	0	NA	intron (NM_001040426, intron 6 of 17)	intron (NM_001040426, intron 6 of 17)	-123893	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding
chipseq_peak_1924	chr10	106130621	106131722	+	0	NA	Intergenic	MLT-int|LTR|ERVL-MaLR	289692	NM_025602	52713	Mm.339224	NM_025602		Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding
chipseq_peak_4434	chr14	77147555	77148133	+	0	NA	Intergenic	Intergenic	-8919	NM_001253759	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding
chipseq_peak_1840	chr10	98011824	98013633	+	0	NA	Intergenic	Intergenic	-45638	NR_033537	100038699	Mm.467933	NR_033537		Gm10754	ENSMUSG00000074776	predicted gene 10754	ncRNA
chipseq_peak_10283	chr5	13059008	13060004	+	0	NA	Intergenic	Intergenic	-337278	NM_001243072	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
chipseq_peak_9402	chr3	153598558	153598826	+	0	NA	intron (NM_011372, intron 1 of 4)	MLT1H|LTR|ERVL-MaLR	126441	NM_011372	20447	Mm.296453	NM_011372		St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
chipseq_peak_9250	chr3	134223912	134224374	+	0	NA	Intergenic	Intergenic	-12352	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding
chipseq_peak_391	chr1	56355004	56355609	+	0	NA	Intergenic	Intergenic	282145	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_9704	chr4	32750681	32751075	+	0	NA	intron (NM_001081392, intron 80 of 101)	intron (NM_001081392, intron 80 of 101)	-49381	NM_175364	108755	Mm.1182	NM_175364		Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding
chipseq_peak_10412	chr5	39625003	39625420	+	0	NA	intron (NM_010474, intron 1 of 1)	intron (NM_010474, intron 1 of 1)	19420	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_9238	chr3	133496751	133497288	+	0	NA	intron (NM_001040400, intron 2 of 10)	intron (NM_001040400, intron 2 of 10)	47371	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding
chipseq_peak_6619	chr18	19735956	19737587	+	0	NA	Intergenic	Intergenic	265326	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_10388	chr5	33657851	33658499	+	0	NA	promoter-TSS (NM_001040435)	promoter-TSS (NM_001040435)	47	NM_001310541	21335	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding
chipseq_peak_1030	chr1	169031856	169032418	+	0	NA	Intergenic	Intergenic	499327	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
chipseq_peak_6961	chr18	68244351	68244705	+	0	NA	intron (NM_172631, intron 4 of 5)	intron (NM_172631, intron 4 of 5)	16445	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA
chipseq_peak_6430	chr17	75471902	75473688	+	0	NA	intron (NM_207246, intron 1 of 17)	intron (NM_207246, intron 1 of 17)	7257	NM_207246	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding
chipseq_peak_1781	chr10	91187456	91188265	+	0	NA	Intergenic	Intergenic	-16241	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
chipseq_peak_10130	chr4	109759127	109759631	+	0	NA	intron (NM_007983, intron 7 of 18)	intron (NM_007983, intron 7 of 18)	82752	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding
chipseq_peak_885	chr1	143644109	143645203	+	0	NA	intron (NM_020025, intron 1 of 1)	intron (NM_020025, intron 1 of 1)	3959	NM_020025	26878	Mm.285580	NM_020025		B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding
chipseq_peak_6300	chr17	52461569	52461955	+	0	NA	Intergenic	Intergenic	-140947	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
chipseq_peak_11200	chr6	13786725	13787564	+	0	NA	Intergenic	Intergenic	52704	NM_145066	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding
chipseq_peak_1319	chr10	18710744	18711345	+	0	NA	intron (NM_001033258, intron 2 of 33)	intron (NM_001033258, intron 2 of 33)	32714	NM_001033258	215821	Mm.40491	NM_001033258	ENSMUSG00000019852	Arfgef3	9630004D11|B930094H20Rik|BIG3|D10Bwg1379e|mKIAA1244	ARFGEF family member 3	protein-coding
chipseq_peak_3045	chr12	60820631	60822530	+	0	NA	Intergenic	Intergenic	700240	NR_045049	100504101	Mm.235026	NR_045049		Gm20063	-	predicted gene, 20063	ncRNA
chipseq_peak_8923	chr3	79930075	79930455	+	0	NA	intron (NM_133187, intron 2 of 3)	intron (NM_133187, intron 2 of 3)	44335	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_12092	chr7	49569609	49570038	+	0	NA	intron (NM_001111016, intron 23 of 38)	intron (NM_001111016, intron 23 of 38)	67012	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding
chipseq_peak_4563	chr14	95248286	95249425	+	0	NA	Intergenic	Intergenic	-632411	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding
chipseq_peak_7770	chr2	58613001	58614137	+	0	NA	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	46235	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
chipseq_peak_12921	chr8	59436253	59436512	+	0	NA	Intergenic	Intergenic	-389267	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
chipseq_peak_14097	chrX	145298986	145299403	+	0	NA	intron (NM_178358, intron 3 of 3)	intron (NM_178358, intron 3 of 3)	49700	NM_178358	237091	Mm.135547	NM_178358	ENSMUSG00000041700	Lhfpl1	Lhfp	lipoma HMGIC fusion partner-like 1	protein-coding
chipseq_peak_8349	chr2	158643896	158644364	+	0	NA	Intergenic	L1MC5|LINE|L1	5547	NR_037312	100499529		NR_037312	ENSMUSG00000093120	Mir3474	mir-3474|mmu-mir-3474	microRNA 3474	ncRNA
chipseq_peak_12059	chr7	36332650	36333058	+	0	NA	Intergenic	Intergenic	-365264	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding
chipseq_peak_2620	chr11	117508902	117509236	+	0	NA	Intergenic	Intergenic	24701	NR_130966	432615	Mm.126359	NM_001004166		Gm11733	OTTMUSG00000003802	predicted gene 11733	ncRNA
chipseq_peak_1034	chr1	169103191	169103585	+	0	NA	Intergenic	Intergenic	428076	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
chipseq_peak_6094	chr16	88094200	88094648	+	0	NA	intron (NM_010348, intron 1 of 15)	intron (NM_010348, intron 1 of 15)	195834	NM_010348	14805	Mm.5134	NM_010348		Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding
chipseq_peak_8034	chr2	102134587	102135154	+	0	NA	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	51590	NM_001290784	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding
chipseq_peak_9232	chr3	130530060	130530758	+	0	NA	intron (NM_198711, intron 16 of 34)	intron (NM_198711, intron 16 of 34)	-87039	NM_001163587	71760	Mm.29125	NM_027907		Etnppl	1300019H02Rik|AI195447|Agxt2l1	ethanolamine phosphate phospholyase	protein-coding
chipseq_peak_889	chr1	144166854	144167354	+	0	NA	intron (NM_153171, intron 4 of 5)	intron (NM_153171, intron 4 of 5)	10268	NM_153171	246709	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding
chipseq_peak_9747	chr4	39302605	39303094	+	0	NA	Intergenic	Intergenic	-147444	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
chipseq_peak_9504	chr4	12616735	12617444	+	0	NA	Intergenic	Intergenic	-289748	NM_173746	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_14061	chrX	108842524	108843170	+	0	NA	intron (NR_015493, intron 2 of 4)	L1M4|LINE|L1	8369	NR_015493	69964	Mm.160066	NR_015493	ENSMUSG00000086629	2810403D21Rik	1810022M18Rik|4632410B05Rik|AU017716	RIKEN cDNA 2810403D21 gene	ncRNA
chipseq_peak_7069	chr19	6606657	6607281	+	0	NA	Intergenic	L1MB1|LINE|L1	-63899	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding
chipseq_peak_12713	chr8	30923529	30924268	+	0	NA	Intergenic	Intergenic	-165764	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding
chipseq_peak_9580	chr4	19880832	19881709	+	0	NA	intron (NM_175406, intron 6 of 7)	intron (NM_175406, intron 6 of 7)	41296	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding
chipseq_peak_5235	chr15	65779019	65779913	+	0	NA	Intergenic	Intergenic	-7575	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
chipseq_peak_8449	chr3	9853912	9854466	+	0	NA	Intergenic	L1MA5|LINE|L1	-20510	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding
chipseq_peak_4162	chr14	15603832	15604457	+	0	NA	Intergenic	Intergenic	-165157	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding
chipseq_peak_4971	chr15	32533619	32534108	+	0	NA	intron (NM_009154, intron 5 of 22)	intron (NM_009154, intron 5 of 22)	289050	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding
chipseq_peak_11709	chr6	98249760	98252024	+	0	NA	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	91862	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_12862	chr8	54414017	54414797	+	0	NA	Intergenic	Intergenic	115591	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding
chipseq_peak_2269	chr11	38588678	38589432	+	0	NA	Intergenic	Intergenic	-69010	NR_040295	100502917	Mm.61144	NR_040295		Gm12130	OTTMUSG00000005424	predicted gene 12130	ncRNA
chipseq_peak_8999	chr3	85738358	85738829	+	0	NA	intron (NM_172682, intron 2 of 11)	intron (NM_172682, intron 2 of 11)	7616	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding
chipseq_peak_10571	chr5	62683198	62684414	+	0	NA	intron (NM_178407, intron 10 of 32)	intron (NM_178407, intron 10 of 32)	82371	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
chipseq_peak_6709	chr18	30642009	30642768	+	0	NA	Intergenic	Intergenic	369492	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_1746	chr10	85625064	85625604	+	0	NA	intron (NM_001017525, intron 3 of 14)	intron (NM_001017525, intron 3 of 14)	26923	NM_001017525	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding
chipseq_peak_9917	chr4	76447374	76448799	+	0	NA	intron (NM_011211, intron 10 of 39)	intron (NM_011211, intron 10 of 39)	-1169800	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_7278	chr19	48545197	48545852	+	0	NA	intron (NM_025696, intron 4 of 26)	intron (NM_025696, intron 4 of 26)	339499	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding
chipseq_peak_4995	chr15	36989388	36990448	+	0	NA	Intergenic	Intergenic	17484	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding
chipseq_peak_4993	chr15	36943299	36943692	+	0	NA	Intergenic	Intergenic	63907	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding
chipseq_peak_5747	chr16	50196007	50196442	+	0	NA	3' UTR (NM_027444, exon 17 of 17)	3' UTR (NM_027444, exon 17 of 17)	-123372	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA
chipseq_peak_1360	chr10	25742612	25743113	+	0	NA	Intergenic	Intergenic	94575	NR_045349	73803	Mm.258921	NR_045349		4930401C15Rik	-	RIKEN cDNA 4930401C15 gene	ncRNA
chipseq_peak_10644	chr5	71746319	71748067	+	0	NA	intron (NM_008069, intron 3 of 8)	MER113|DNA|hAT-Charlie	47177	NM_008069	14400	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding
chipseq_peak_12949	chr8	64925957	64926897	+	0	NA	Intergenic	Intergenic	-20758	NM_001163747	73067	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding
chipseq_peak_463	chr1	66395278	66395903	+	0	NA	intron (NM_001310634, intron 4 of 14)	intron (NM_001310634, intron 4 of 14)	-72857	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80 homolog (C. elegans)	protein-coding
chipseq_peak_3923	chr13	97314288	97314772	+	0	NA	Intergenic	Intergenic	73425	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding
chipseq_peak_4274	chr14	45189014	45189314	+	0	NA	intron (NM_001310534, intron 6 of 20)	(TTAA)n|Simple_repeat|Simple_repeat	30261	NM_001310534	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding
chipseq_peak_13572	chr9	53384612	53385142	+	0	NA	intron (NM_212445, intron 1 of 7)	intron (NM_212445, intron 1 of 7)	854	NM_212445	68304	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding
chipseq_peak_2973	chr12	50999575	51003356	+	0	NA	Intergenic	Intergenic	-3691	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
chipseq_peak_1758	chr10	87666053	87666704	+	0	NA	Intergenic	Intergenic	144583	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding
chipseq_peak_8251	chr2	140532676	140533868	+	0	NA	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	137837	NM_028387	72899	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding
chipseq_peak_5483	chr16	6390476	6391084	+	0	NA	intron (NM_021477, intron 2 of 16)	intron (NM_021477, intron 2 of 16)	415193	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA
chipseq_peak_5578	chr16	28877082	28877484	+	0	NA	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	52415	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding
chipseq_peak_13390	chr9	27998751	27999080	+	0	NA	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	207646	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_553	chr1	79335024	79337289	+	0	NA	Intergenic	Intergenic	103934	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding
chipseq_peak_9043	chr3	102629094	102629460	+	0	NA	Intergenic	Intergenic	-105493	NM_027533	70747	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding
chipseq_peak_13260	chr8	127675187	127675773	+	0	NA	Intergenic	Intergenic	375828	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_10217	chr4	148871585	148872016	+	0	NA	intron (NM_001159344, intron 2 of 20)	intron (NM_001159344, intron 2 of 20)	67408	NM_001159344	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding
chipseq_peak_2048	chr10	122408198	122409131	+	0	NA	Intergenic	Intergenic	-39835	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding
chipseq_peak_11468	chr6	47780467	47782494	+	0	NA	Intergenic	Intergenic	22172	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA
chipseq_peak_7413	chr2	7792449	7793244	+	0	NA	Intergenic	Intergenic	-396648	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_4733	chr14	119633232	119634144	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	-115539	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA
chipseq_peak_564	chr1	81836107	81836599	+	0	NA	Intergenic	Intergenic	-295563	NR_105762	102466629		NR_105762	ENSMUSG00000098797	Mir6344	Gm27840|mmu-mir-6344	microRNA 6344	ncRNA
chipseq_peak_241	chr1	39336841	39337300	+	0	NA	intron (NM_008719, intron 15 of 20)	intron (NM_008719, intron 15 of 20)	-30781	NM_001252218	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	-	ribosomal protein L31	protein-coding
chipseq_peak_11236	chr6	17388168	17388902	+	0	NA	Intergenic	Intergenic	-75422	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding
chipseq_peak_1999	chr10	113122135	113122571	+	0	NA	Intergenic	Intergenic	-193327	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding
chipseq_peak_14062	chrX	109841994	109842461	+	0	NA	Intergenic	Intergenic	-530526	NR_033597	634340	Mm.66709	NR_033597	ENSMUSG00000082853	Gm7134	EG634340	kinesin family member 18B pseudogene	pseudo
chipseq_peak_10024	chr4	88183640	88184900	+	0	NA	intron (NM_001081184, intron 9 of 43)	RSINE1|SINE|B4	62230	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA
chipseq_peak_5813	chr16	60534166	60534934	+	0	NA	intron (NM_007938, intron 1 of 17)	Lx8|LINE|L1	70981	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding
chipseq_peak_11933	chr6	137268161	137270363	+	0	NA	intron (NM_001164401, intron 1 of 25)	intron (NM_001164401, intron 1 of 25)	16963	NM_001164401	19277	Mm.186361	NM_011216		Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
chipseq_peak_1417	chr10	30200541	30201182	+	0	NA	promoter-TSS (NM_001109747)	promoter-TSS (NM_001109747)	-321	NM_001109747	66311	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding
chipseq_peak_8820	chr3	66537149	66537661	+	0	NA	Intergenic	Intergenic	-240568	NM_145820	72789	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding
chipseq_peak_8250	chr2	140523061	140523601	+	0	NA	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	127896	NM_028387	72899	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding
chipseq_peak_12213	chr7	73594677	73595382	+	0	NA	Intergenic	Intergenic	-36634	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000098496	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA
chipseq_peak_2423	chr11	76410503	76411073	+	0	NA	intron (NM_001291161, intron 2 of 3)	BC1_Mm|scRNA|scRNA	3645	NM_019818	56322	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding
chipseq_peak_6660	chr18	23614314	23614727	+	0	NA	intron (NM_001285807, intron 14 of 24)	intron (NM_001285807, intron 14 of 24)	117038	NM_001285808	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding
chipseq_peak_13792	chr9	97571032	97571497	+	0	NA	intron (NM_022319, intron 4 of 17)	intron (NM_022319, intron 4 of 17)	-201306	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
chipseq_peak_11437	chr6	44147805	44148446	+	0	NA	Intergenic	Intergenic	-481847	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
chipseq_peak_1124	chr1	178094775	178095230	+	0	NA	Intergenic	L1MD3|LINE|L1	-92415	NM_024282	78825	Mm.440132	NM_024282		Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding
chipseq_peak_13032	chr8	82384563	82385239	+	0	NA	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	17685	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding
chipseq_peak_6611	chr18	18912998	18914178	+	0	NA	Intergenic	Intergenic	1088509	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_3301	chr12	97836258	97836521	+	0	NA	Intergenic	Intergenic	423070	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding
chipseq_peak_3024	chr12	58504240	58504706	+	0	NA	Intergenic	Intergenic	-235215	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
chipseq_peak_7650	chr2	45036485	45038424	+	0	NA	intron (NM_001289521, intron 1 of 8)	intron (NM_001289521, intron 1 of 8)	-14277	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA
chipseq_peak_2801	chr12	31851521	31852560	+	0	NA	intron (NM_001163126, intron 14 of 22)	MLTR18B_MM|LTR|ERVK	98495	NM_153198	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding
chipseq_peak_106	chr1	23286663	23287234	+	0	NA	Intergenic	Intergenic	-4753	NR_029717	723964		NR_029717	ENSMUSG00000065567	Mir30c-2	Mirn30c-2|mir-30c-2	microRNA 30c-2	ncRNA
chipseq_peak_8805	chr3	64964026	64965160	+	0	NA	Intergenic	Intergenic	-119850	NR_003962	319210	Mm.246646	NM_175670	ENSMUSG00000097538	Vmn2r-ps11	4930518C23Rik	vomeronasal 2, receptor, pseudogene 11	pseudo
chipseq_peak_3577	chr13	44977236	44978031	+	0	NA	intron (NM_025772, intron 5 of 9)	intron (NM_025772, intron 5 of 9)	24463	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding
chipseq_peak_898	chr1	144883139	144884603	+	0	NA	Intergenic	Intergenic	-108450	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding
chipseq_peak_3224	chr12	82374081	82374426	+	0	NA	intron (NM_172579, intron 5 of 20)	intron (NM_172579, intron 5 of 20)	62904	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding
chipseq_peak_9953	chr4	79597895	79598790	+	0	NA	Intergenic	Intergenic	1004295	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_11785	chr6	104312983	104313522	+	0	NA	Intergenic	Intergenic	-179792	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_6509	chr17	89089792	89090384	+	0	NA	intron (NM_013523, intron 2 of 9)	intron (NM_013523, intron 2 of 9)	110587	NM_013523	14309	Mm.57155	NM_013523	ENSMUSG00000032937	Fshr	-	follicle stimulating hormone receptor	protein-coding
chipseq_peak_5552	chr16	25615049	25615761	+	0	NA	Intergenic	Intergenic	-68360	NM_001127261	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding
chipseq_peak_10380	chr5	30790069	30790583	+	0	NA	intron (NM_023047, intron 9 of 12)	L1M5|LINE|L1	-24315	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding
chipseq_peak_13115	chr8	98683934	98685610	+	0	NA	Intergenic	Intergenic	-327115	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA
chipseq_peak_7545	chr2	35369714	35370319	+	0	NA	Intergenic	Intergenic	-2287	NM_029463	75859	Mm.159604	NM_029463	ENSMUSG00000026882	4930568D16Rik	Ggta1l1	RIKEN cDNA 4930568D16 gene	protein-coding
chipseq_peak_11071	chr5	138570866	138571842	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-6660	NM_029693	76658	Mm.73235	NM_029693	ENSMUSG00000029526	1700123K08Rik	-	RIKEN cDNA 1700123K08 gene	protein-coding
chipseq_peak_9078	chr3	110434749	110435552	+	0	NA	Intergenic	Intergenic	-184151	NM_178891	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding
chipseq_peak_1157	chr1	185111439	185111889	+	0	NA	Intergenic	Intergenic	-92504	NM_001163754	98732	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding
chipseq_peak_5484	chr16	6503685	6503985	+	0	NA	intron (NM_021477, intron 3 of 16)	intron (NM_021477, intron 3 of 16)	528248	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA
chipseq_peak_3731	chr13	78161675	78162877	+	0	NA	intron (NM_001163419, intron 9 of 9)	intron (NM_001163419, intron 9 of 9)	-35741	NR_045195	320174	Mm.393122	NR_045195		A830082K12Rik	-	RIKEN cDNA A830082K12 gene	ncRNA
chipseq_peak_10849	chr5	102327765	102328919	+	0	NA	Intergenic	Intergenic	-153049	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
chipseq_peak_9911	chr4	76126199	76126763	+	0	NA	intron (NM_011211, intron 20 of 39)	intron (NM_011211, intron 20 of 39)	-848195	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_1730	chr10	81006073	81006506	+	0	NA	intron (NM_010319, intron 1 of 3)	intron (NM_010319, intron 1 of 3)	-4924	NM_001038655	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding
chipseq_peak_6428	chr17	75107363	75108254	+	0	NA	intron (NM_019919, intron 3 of 33)	(GGA)n|Simple_repeat|Simple_repeat	-71002	NM_206958	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding
chipseq_peak_8789	chr3	61348173	61348689	+	0	NA	Intergenic	Intergenic	-16076	NM_028712	74012	Mm.422674	NM_028712		Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding
chipseq_peak_6806	chr18	48551616	48552217	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	506581	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding
chipseq_peak_598	chr1	89034756	89035468	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	18999	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA
chipseq_peak_5408	chr15	94638348	94638792	+	0	NA	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	9385	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding
chipseq_peak_2007	chr10	114321350	114321954	+	0	NA	Intergenic	Intergenic	479718	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding
chipseq_peak_1805	chr10	93638482	93639617	+	0	NA	Intergenic	Intergenic	-2000	NM_021320	57764	Mm.483868	NM_021320		Ntn4	-	netrin 4	protein-coding
chipseq_peak_6544	chr17	92256730	92257819	+	0	NA	Intergenic	L1MEb|LINE|L1	-941743	NM_001315503	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
chipseq_peak_11087	chr5	142869533	142869786	+	0	NA	Intergenic	Intergenic	25579	NM_001033312	231863	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding
chipseq_peak_2915	chr12	44402182	44402565	+	0	NA	intron (NM_176930, intron 2 of 30)	intron (NM_176930, intron 2 of 30)	73488	NM_176930	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding
chipseq_peak_4069	chr13	111251103	111251854	+	0	NA	Intergenic	Intergenic	-3535	NM_175497	238880	Mm.107293	NM_175497	ENSMUSG00000055194	Actbl2	4732495G21Rik	actin, beta-like 2	protein-coding
chipseq_peak_6453	chr17	80762798	80763656	+	0	NA	Intergenic	Intergenic	-35202	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding
chipseq_peak_9110	chr3	117120387	117120909	+	0	NA	Intergenic	Intergenic	-42883	NR_038029	433646	Mm.158997	NR_038029	ENSMUSG00000028009	1700061I17Rik	-	RIKEN cDNA 1700061I17 gene	ncRNA
chipseq_peak_8339	chr2	157530271	157530802	+	0	NA	Intergenic	Intergenic	-29542	NM_001291129	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding
chipseq_peak_8613	chr3	38906684	38907288	+	0	NA	intron (NM_183221, intron 1 of 16)	intron (NM_183221, intron 1 of 16)	20046	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT tumor suppressor homolog 4 (Drosophila)	protein-coding
chipseq_peak_961	chr1	158516526	158517276	+	0	NA	intron (NM_001205204, intron 7 of 22)	intron (NM_001205204, intron 7 of 22)	11276	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA
chipseq_peak_5091	chr15	48277184	48277710	+	0	NA	intron (NM_001081391, intron 9 of 70)	intron (NM_001081391, intron 9 of 70)	514542	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
chipseq_peak_2687	chr12	12206871	12207269	+	0	NA	Intergenic	L1MEd|LINE|L1	-55069	NM_029758	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding
chipseq_peak_7737	chr2	56257097	56258028	+	0	NA	Intergenic	Intergenic	-528249	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
chipseq_peak_11190	chr6	13379691	13380292	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-33346	NR_038149	69413	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA
chipseq_peak_13024	chr8	79350244	79350957	+	0	NA	intron (NM_008539, intron 4 of 6)	intron (NM_008539, intron 4 of 6)	48868	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding
chipseq_peak_49	chr1	15615661	15616747	+	0	NA	intron (NM_001098528, intron 1 of 1)	intron (NM_001098528, intron 1 of 1)	-189442	NM_001286628	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding
chipseq_peak_51	chr1	15776886	15777229	+	0	NA	Intergenic	Intergenic	-28589	NM_001286628	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding
chipseq_peak_12290	chr7	88027447	88027918	+	0	NA	intron (NM_001143834, intron 6 of 10)	intron (NM_001143834, intron 6 of 10)	-250403	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding
chipseq_peak_3557	chr13	42738069	42738482	+	0	NA	intron (NM_001302635, intron 3 of 13)	intron (NM_001302635, intron 3 of 13)	28694	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_3376	chr13	4662434	4662945	+	0	NA	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-53525	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding
chipseq_peak_6336	chr17	61302008	61302330	+	0	NA	Intergenic	Intergenic	1579148	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_12396	chr7	96887143	96887518	+	0	NA	intron (NM_001310760, intron 28 of 32)	intron (NM_001310760, intron 28 of 32)	-64197	NM_153591	244141	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding
chipseq_peak_11353	chr6	33681756	33682536	+	0	NA	intron (NM_009148, intron 10 of 17)	intron (NM_009148, intron 10 of 17)	-347302	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding
chipseq_peak_2206	chr11	25862479	25863131	+	0	NA	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-339435	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
chipseq_peak_2318	chr11	42376961	42377188	+	0	NA	Intergenic	Intergenic	-42683	NM_008070	14401	Mm.338723	NM_008070		Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding
chipseq_peak_1312	chr10	17844762	17845362	+	0	NA	3' UTR (NM_138628, exon 10 of 10)	3' UTR (NM_138628, exon 10 of 10)	48843	NM_138628	378431	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding
chipseq_peak_5257	chr15	66714180	66716310	+	0	NA	intron (NM_009375, intron 23 of 47)	intron (NM_009375, intron 23 of 47)	44475	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding
chipseq_peak_4508	chr14	88542816	88544131	+	0	NA	Intergenic	Intergenic	-72077	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_7588	chr2	43056381	43057180	+	0	NA	Intergenic	Intergenic	-403182	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding
chipseq_peak_3499	chr13	28793587	28795692	+	0	NA	intron (NR_045053, intron 2 of 8)	intron (NR_045053, intron 2 of 8)	-83766	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA
chipseq_peak_5734	chr16	49606393	49606815	+	0	NA	Intergenic	Intergenic	-92690	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding
chipseq_peak_13037	chr8	82981113	82981693	+	0	NA	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	118047	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding
chipseq_peak_2575	chr11	109621227	109621510	+	0	NA	Intergenic	Intergenic	-9979	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding
chipseq_peak_13398	chr9	28457971	28459050	+	0	NA	intron (NM_177906, intron 2 of 7)	intron (NM_177906, intron 2 of 7)	667241	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_13929	chr9	113650734	113651646	+	0	NA	TTS (NM_011052)	TTS (NM_011052)	57069	NM_011052	18571	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding
chipseq_peak_10381	chr5	30878613	30879549	+	0	NA	Intergenic	Intergenic	9434	NM_144525	68796	Mm.205169	NM_144525		Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding
chipseq_peak_5649	chr16	41124596	41125470	+	0	NA	Intergenic	Intergenic	-408309	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_9372	chr3	150610417	150611252	+	0	NA	Intergenic	Intergenic	-827048	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_8174	chr2	131819966	131820325	+	0	NA	non-coding (NR_029381, exon 3 of 3)	non-coding (NR_029381, exon 3 of 3)	27511	NR_029381	414081	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA
chipseq_peak_13544	chr9	50973774	50975114	+	0	NA	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	34629	NM_178710	235344	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding
chipseq_peak_2031	chr10	118820791	118821322	+	0	NA	Intergenic	Intergenic	47847	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chipseq_peak_7622	chr2	44215241	44216230	+	0	NA	intron (NM_001301832, intron 12 of 14)	intron (NM_001301832, intron 12 of 14)	-150411	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_9054	chr3	104383654	104384622	+	0	NA	Intergenic	Intergenic	127780	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding
chipseq_peak_9274	chr3	138730179	138730662	+	0	NA	Intergenic	Intergenic	-3436	NR_040545	74635	Mm.410825	NR_040545	ENSMUSG00000105838	4930425O10Rik	-	RIKEN cDNA 4930425O10 gene	ncRNA
chipseq_peak_5986	chr16	74741663	74742051	+	0	NA	Intergenic	Intergenic	-330945	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_11907	chr6	126334136	126334682	+	0	NA	Intergenic	Intergenic	-5723	NR_045480	100038574	Mm.399353	NR_045480	ENSMUSG00000107623	Gm10415	ENSMUSG00000072759	predicted gene 10415	ncRNA
chipseq_peak_10714	chr5	81201802	81202404	+	0	NA	intron (NM_198702, intron 3 of 27)	intron (NM_198702, intron 3 of 27)	180510	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_8663	chr3	46616029	46616866	+	0	NA	Intergenic	Intergenic	-168506	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding
chipseq_peak_4547	chr14	93539466	93540615	+	0	NA	intron (NM_001271798, intron 2 of 3)	intron (NM_001271798, intron 2 of 3)	348848	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_4906	chr15	23212000	23213270	+	0	NA	intron (NM_001081299, intron 2 of 11)	intron (NM_001081299, intron 2 of 11)	176172	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_11640	chr6	85241374	85241805	+	0	NA	intron (NM_178639, intron 10 of 13)	L1ME3Cz|LINE|L1	53658	NM_010131	13796	Mm.391473	NM_010131		Emx1	-	empty spiracles homeobox 1	protein-coding
chipseq_peak_2424	chr11	76546527	76548646	+	0	NA	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	23798	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding
chipseq_peak_6143	chr17	3331680	3332241	+	0	NA	intron (NM_001122998, intron 1 of 26)	intron (NM_001122998, intron 1 of 26)	5387	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
chipseq_peak_11323	chr6	31170111	31170588	+	0	NA	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48125	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA
chipseq_peak_10200	chr4	135425458	135426020	+	0	NA	intron (NM_022980, intron 1 of 4)	intron (NM_022980, intron 1 of 4)	8066	NM_022980	53902	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding
chipseq_peak_11157	chr6	8900100	8900499	+	0	NA	Intergenic	Intergenic	-49720	NM_008751	18231	Mm.46954	NM_008751		Nxph1	C130005L03Rik	neurexophilin 1	protein-coding
chipseq_peak_4366	chr14	64687545	64688725	+	0	NA	intron (NM_001081177, intron 2 of 39)	B3|SINE|B2	35604	NM_001081177	16554	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding
chipseq_peak_12680	chr8	22878078	22879170	+	0	NA	intron (NM_001081149, intron 3 of 17)	(TCTCTG)n|Simple_repeat|Simple_repeat	19085	NM_001081149	244349	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding
chipseq_peak_6074	chr16	83423003	83423665	+	0	NA	Intergenic	Intergenic	-947809	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
chipseq_peak_7420	chr2	8027392	8027918	+	0	NA	Intergenic	Intergenic	-631457	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_9494	chr4	12007845	12008114	+	0	NA	Intergenic	L1MB2|LINE|L1	41405	NR_040577	100503636	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA
chipseq_peak_4266	chr14	38870537	38871115	+	0	NA	intron (NM_008734, intron 2 of 9)	intron (NM_008734, intron 2 of 9)	-27476	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
chipseq_peak_3605	chr13	46390751	46392267	+	0	NA	Intergenic	L1MA9|LINE|L1	-26791	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding
chipseq_peak_4136	chr14	10166544	10167211	+	0	NA	intron (NM_001308286, intron 2 of 6)	intron (NM_001308286, intron 2 of 6)	282782	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo
chipseq_peak_6090	chr16	87000878	87001684	+	0	NA	Intergenic	Intergenic	-352904	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
chipseq_peak_1419	chr10	30257565	30258431	+	0	NA	Intergenic	Intergenic	-57458	NM_001109747	66311	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding
chipseq_peak_7312	chr19	57066449	57066794	+	0	NA	intron (NM_001290813, intron 10 of 20)	intron (NM_001290813, intron 10 of 20)	52403	NM_001103178	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding
chipseq_peak_4926	chr15	26276019	26276746	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	-32666	NM_177597	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding
chipseq_peak_5264	chr15	66831546	66831984	+	0	NA	promoter-TSS (NM_009192)	promoter-TSS (NM_009192)	64	NM_009192	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding
chipseq_peak_6021	chr16	76728611	76729225	+	0	NA	Intergenic	Intergenic	281963	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA
chipseq_peak_4000	chr13	107175193	107176425	+	0	NA	Intergenic	L1MA7|LINE|L1	153239	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA
chipseq_peak_2354	chr11	52677558	52678830	+	0	NA	Intergenic	Intergenic	-86512	NM_177059	320027	Mm.44518	NM_177059		Fstl4	B230374F23Rik|SPIG1|mKIAA1061	follistatin-like 4	protein-coding
chipseq_peak_7397	chr2	7334389	7336011	+	0	NA	intron (NM_001110231, intron 2 of 15)	intron (NM_001110231, intron 2 of 15)	60800	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_1056	chr1	172387187	172387899	+	0	NA	Intergenic	Intergenic	11012	NM_026234	67556	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding
chipseq_peak_12187	chr7	68088787	68089134	+	0	NA	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	136703	NM_010513	16001	Mm.275742	NM_010513		Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding
chipseq_peak_705	chr1	110004871	110005404	+	0	NA	intron (NM_001316744, intron 3 of 12)	intron (NM_001316744, intron 3 of 12)	21414	NM_172853	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding
chipseq_peak_7765	chr2	58319663	58320212	+	0	NA	intron (NM_001111030, intron 1 of 8)	intron (NM_001111030, intron 1 of 8)	4870	NM_001033369	269275	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding
chipseq_peak_8856	chr3	70103842	70105061	+	0	NA	Intergenic	Intergenic	96838	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1 homolog (zebrafish)	protein-coding
chipseq_peak_4122	chr13	118806550	118807268	+	0	NA	Intergenic	Intergenic	92210	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding
chipseq_peak_3131	chr12	71363915	71364414	+	0	NA	Intergenic	Intergenic	54280	NM_021532	59036	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dapper homolog 1, antagonist of beta-catenin (xenopus)	protein-coding
chipseq_peak_12562	chr7	135990225	135990801	+	0	NA	Intergenic	Intergenic	-274134	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding
chipseq_peak_6897	chr18	58307364	58308180	+	0	NA	Intergenic	Intergenic	-97846	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding
chipseq_peak_13758	chr9	92209317	92210746	+	0	NA	TTS (NM_001195693)	TTS (NM_001195693)	17095	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding
chipseq_peak_2927	chr12	47383257	47383729	+	0	NA	Intergenic	Intergenic	-564718	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
chipseq_peak_4287	chr14	48303160	48303579	+	0	NA	Intergenic	Intergenic	104653	NR_003630	624367	Mm.445185	NM_001037921	ENSMUSG00000063885	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_10237	chr4	155708863	155709606	+	0	NA	intron (NM_026899, intron 1 of 4)	intron (NM_026899, intron 1 of 4)	4419	NM_026899	68991	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding
chipseq_peak_1841	chr10	98099614	98100028	+	0	NA	Intergenic	Intergenic	-132731	NR_033537	100038699	Mm.467933	NR_033537		Gm10754	ENSMUSG00000074776	predicted gene 10754	ncRNA
chipseq_peak_3696	chr13	70159472	70159951	+	0	NA	Intergenic	Intergenic	-73111	NR_036596	75086	Mm.390616	NR_036596		4930520P13Rik	-	RIKEN cDNA 4930520P13 gene	ncRNA
chipseq_peak_5804	chr16	57765278	57766191	+	0	NA	Intergenic	Intergenic	-10997	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding
chipseq_peak_9676	chr4	31205711	31206488	+	0	NA	Intergenic	MER67C|LTR|ERV1	541503	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
chipseq_peak_8848	chr3	68574148	68574833	+	0	NA	intron (NM_013928, intron 1 of 6)	(T)n|Simple_repeat|Simple_repeat	2122	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_8795	chr3	62412710	62413371	+	0	NA	intron (NM_001081295, intron 5 of 13)	intron (NM_001081295, intron 5 of 13)	74263	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding
chipseq_peak_7428	chr2	8111299	8112947	+	0	NA	Intergenic	Intergenic	-715925	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_8571	chr3	29608450	29609539	+	0	NA	intron (NM_001167748, intron 6 of 12)	intron (NM_001167748, intron 6 of 12)	-27750	NR_105796	102466637		NR_105796	ENSMUSG00000098315	Mir21b	Gm27951|mmu-mir-21b	microRNA 21b	ncRNA
chipseq_peak_720	chr1	114546971	114547446	+	0	NA	Intergenic	Intergenic	-1137929	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_12578	chr8	5917576	5918880	+	0	NA	Intergenic	Intergenic	-812996	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_10039	chr4	92026322	92026865	+	0	NA	Intergenic	Intergenic	120628	NM_027034	69314	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding
chipseq_peak_12604	chr8	8031783	8032109	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	628827	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_828	chr1	137432447	137433284	+	0	NA	Intergenic	Intergenic	-472417	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding
chipseq_peak_5461	chr15	103719062	103719356	+	0	NA	Intergenic	Intergenic	36289	NR_126081	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding
chipseq_peak_9910	chr4	76006691	76007598	+	0	NA	intron (NM_011211, intron 30 of 39)	intron (NM_011211, intron 30 of 39)	-728858	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_6352	chr17	63281076	63281400	+	0	NA	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	31735	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA
chipseq_peak_1486	chr10	40372458	40372753	+	0	NA	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	23297	NM_198164	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding
chipseq_peak_10518	chr5	55704590	55704881	+	0	NA	Intergenic	Intergenic	1354743	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
chipseq_peak_5390	chr15	92528747	92530208	+	0	NA	intron (NM_001164593, intron 3 of 9)	intron (NM_001164593, intron 3 of 9)	-67632	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
chipseq_peak_1044	chr1	170721358	170722046	+	0	NA	intron (NM_001081304, intron 15 of 15)	intron (NM_001081304, intron 15 of 15)	77170	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding
chipseq_peak_2624	chr11	120025625	120026306	+	0	NA	intron (NM_001198785, intron 1 of 13)	RLTR18-int|LTR|ERVK	-11103	NR_029767	723844		NR_029767	ENSMUSG00000065600	Mir338	Mirn338|mir-338|mmu-mir-338	microRNA 338	ncRNA
chipseq_peak_5992	chr16	75227736	75227987	+	0	NA	Intergenic	Intergenic	358200	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_13055	chr8	86418925	86419800	+	0	NA	Intergenic	Intergenic	147228	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
chipseq_peak_12905	chr8	57819299	57819841	+	0	NA	intron (NM_175032, intron 9 of 11)	intron (NM_175032, intron 9 of 11)	-166515	NM_001167981	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
chipseq_peak_7508	chr2	23724386	23725059	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-152618	NM_001165998	76857	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding
chipseq_peak_13332	chr9	16931311	16932320	+	0	NA	Intergenic	Intergenic	-553584	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT tumor suppressor homolog 3 (Drosophila)	protein-coding
chipseq_peak_10299	chr5	14311524	14312235	+	0	NA	Intergenic	Intergenic	-203039	NM_011995	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding
chipseq_peak_5703	chr16	46410431	46410768	+	0	NA	intron (NM_021496, intron 7 of 8)	intron (NM_021496, intron 7 of 8)	86368	NM_021497	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
chipseq_peak_9423	chr3	156559640	156561575	+	0	NA	intron (NR_040400, intron 1 of 1)	intron (NR_040400, intron 1 of 1)	1080	NR_040398	329782	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA
chipseq_peak_371	chr1	56005079	56005481	+	0	NA	Intergenic	Intergenic	-13698	NR_126076	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_9461	chr4	6427295	6427646	+	0	NA	intron (NM_010945, intron 10 of 30)	intron (NM_010945, intron 10 of 30)	26801	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding
chipseq_peak_4639	chr14	108326391	108327459	+	0	NA	Intergenic	MIRb|SINE|MIR	587314	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_9236	chr3	133189238	133189543	+	0	NA	intron (NM_029953, intron 2 of 3)	intron (NM_029953, intron 2 of 3)	45499	NM_029953	77669	Mm.98630	NM_029953	ENSMUSG00000040969	Arhgef38	9130221D24Rik|D630013G24Rik	Rho guanine nucleotide exchange factor (GEF) 38	protein-coding
chipseq_peak_6504	chr17	88675434	88675916	+	0	NA	intron (NM_023630, intron 3 of 8)	intron (NM_023630, intron 3 of 8)	7015	NM_023630	71828	Mm.61330	NM_023630	ENSMUSG00000024154	Gtf2a1l	1700011N16Rik|Alf|Gtf2a1lf	general transcription factor IIA, 1-like	protein-coding
chipseq_peak_12479	chr7	118673145	118673447	+	0	NA	intron (NM_028930, intron 16 of 17)	intron (NM_028930, intron 16 of 17)	32442	NM_019580	56209	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding
chipseq_peak_4346	chr14	64173107	64173745	+	0	NA	intron (NM_001253712, intron 5 of 5)	intron (NM_001253712, intron 5 of 5)	69103	NM_028525	73382	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding
chipseq_peak_12351	chr7	91975880	91976964	+	0	NA	intron (NM_011807, intron 9 of 22)	intron (NM_011807, intron 9 of 22)	-85972	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_13798	chr9	97720430	97721553	+	0	NA	intron (NM_022319, intron 2 of 17)	RSINE1|SINE|B4	-282429	NR_110443	66737	Mm.445908	NR_110443	ENSMUSG00000090255	4921534H16Rik	-	RIKEN cDNA 4921534H16 gene	ncRNA
chipseq_peak_14149	chrX	169056155	169056715	+	0	NA	intron (NM_178754, intron 1 of 12)	intron (NM_178754, intron 1 of 12)	19824	NM_178754	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding
chipseq_peak_13292	chr9	9583171	9583947	+	0	NA	Intergenic	Intergenic	-310872	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_7451	chr2	10009935	10010524	+	0	NA	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	38380	NM_027748	209361	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	protein-coding
chipseq_peak_4045	chr13	109720238	109720586	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-183397	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
chipseq_peak_7763	chr2	58267156	58268515	+	0	NA	3' UTR (NM_001111030, exon 9 of 9)	3' UTR (NM_001111030, exon 9 of 9)	-8944	NR_040365	100502932	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	OTTMUSG00000012672	predicted gene 13544	ncRNA
chipseq_peak_9293	chr3	140756725	140757857	+	0	NA	Intergenic	Intergenic	455064	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding
chipseq_peak_10158	chr4	124210157	124210663	+	0	NA	Intergenic	Intergenic	275549	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA
chipseq_peak_8256	chr2	140913871	140914580	+	0	NA	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-242749	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_8341	chr2	157794379	157794702	+	0	NA	intron (NM_025680, intron 4 of 15)	intron (NM_025680, intron 4 of 15)	57139	NM_025680	66642	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding
chipseq_peak_3060	chr12	62881308	62881678	+	0	NA	Intergenic	Intergenic	193706	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA
chipseq_peak_10122	chr4	106984087	106984370	+	0	NA	intron (NM_198438, intron 4 of 16)	intron (NM_198438, intron 4 of 16)	72758	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding
chipseq_peak_2369	chr11	58938941	58940284	+	0	NA	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-706	NM_022423	108660	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding
chipseq_peak_4839	chr15	17169722	17170237	+	0	NA	Intergenic	Intergenic	391878	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_12065	chr7	37337231	37338269	+	0	NA	Intergenic	Intergenic	432002	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding
chipseq_peak_3940	chr13	98943483	98945326	+	0	NA	Intergenic	Intergenic	-18020	NM_178716	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding
chipseq_peak_5807	chr16	58005588	58006942	+	0	NA	Intergenic	Intergenic	-251528	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding
chipseq_peak_11458	chr6	46921907	46922257	+	0	NA	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-322314	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_921	chr1	149409859	149410455	+	0	NA	Intergenic	Intergenic	512282	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
chipseq_peak_12850	chr8	50382310	50382853	+	0	NA	intron (NR_046067, intron 1 of 5)	intron (NR_046067, intron 1 of 5)	14469	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
chipseq_peak_9087	chr3	113074738	113075777	+	0	NA	Intergenic	Intergenic	81470	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding
chipseq_peak_732	chr1	118458782	118459264	+	0	NA	non-coding (NR_027901, exon 1 of 1)	non-coding (NR_027901, exon 1 of 1)	242	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA
chipseq_peak_6303	chr17	52873025	52873620	+	0	NA	intron (NM_001031811, intron 7 of 15)	intron (NM_001031811, intron 7 of 15)	270613	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
chipseq_peak_12237	chr7	75845898	75846596	+	0	NA	Intergenic	Intergenic	-2091	NM_182782	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding
chipseq_peak_8783	chr3	60551826	60552276	+	0	NA	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	50872	NM_001310514	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding
chipseq_peak_989	chr1	162353675	162354311	+	0	NA	intron (NM_172646, intron 3 of 19)	intron (NM_172646, intron 3 of 19)	124037	NM_001038619	103967	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|mKIAA0820	dynamin 3	protein-coding
chipseq_peak_2881	chr12	39695016	39695489	+	0	NA	Intergenic	L1MEg|LINE|L1	342124	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
chipseq_peak_4938	chr15	27688958	27689461	+	0	NA	Intergenic	Intergenic	-7667	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding
chipseq_peak_13274	chr9	4686697	4687706	+	0	NA	intron (NM_001113180, intron 3 of 16)	intron (NM_001113180, intron 3 of 16)	109033	NM_019691	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding
chipseq_peak_9069	chr3	108306655	108308074	+	0	NA	intron (NM_019972, intron 1 of 19)	(GA)n|Simple_repeat|Simple_repeat	23300	NM_019972	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding
chipseq_peak_8970	chr3	82333573	82333953	+	0	NA	Intergenic	Intergenic	-24309	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding
chipseq_peak_3281	chr12	93993801	93994580	+	0	NA	Intergenic	Intergenic	66852	NR_106175	102465890		NR_106175	ENSMUSG00000098931	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA
chipseq_peak_4189	chr14	21383602	21384333	+	0	NA	intron (NM_134079, intron 9 of 10)	intron (NM_134079, intron 9 of 10)	-115803	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chipseq_peak_9728	chr4	35971243	35971814	+	0	NA	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-126324	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_12800	chr8	44762745	44763108	+	0	NA	Intergenic	Intergenic	-187282	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chipseq_peak_13004	chr8	76383650	76384933	+	0	NA	Intergenic	Intergenic	515882	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
chipseq_peak_7592	chr2	43248642	43248957	+	0	NA	Intergenic	Intergenic	-306526	NM_001289593	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding
chipseq_peak_922	chr1	149861385	149862437	+	0	NA	intron (NM_008869, intron 12 of 17)	intron (NM_008869, intron 12 of 17)	60528	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
chipseq_peak_12268	chr7	82398492	82399093	+	0	NA	intron (NM_001190374, intron 3 of 29)	intron (NM_001190374, intron 3 of 29)	63098	NM_001190374	269959	Mm.65306	NM_001190374	ENSMUSG00000070469	Adamtsl3	9230119C12Rik|C130057K09|mKIAA1233	ADAMTS-like 3	protein-coding
chipseq_peak_9452	chr4	6008459	6009016	+	0	NA	Intergenic	Intergenic	-182368	NM_026534	68053	Mm.404043	NM_026534		Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding
chipseq_peak_14089	chrX	140722786	140723149	+	0	NA	intron (NM_011845, intron 2 of 8)	MER2|DNA|TcMar-Tigger	44939	NM_011845	23947	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding
chipseq_peak_10500	chr5	52263181	52263545	+	0	NA	Intergenic	Intergenic	-46930	NR_040717	414111	Mm.417638	NR_040717	ENSMUSG00000106464	C130083M11Rik	-	RIKEN cDNA C130083M11 gene	ncRNA
chipseq_peak_10201	chr4	137813331	137813618	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	-17090	NM_007431	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding
chipseq_peak_3517	chr13	29564610	29566211	+	0	NA	intron (NR_131896, intron 9 of 16)	intron (NR_131896, intron 9 of 16)	290263	NM_144536	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
chipseq_peak_5801	chr16	57171479	57172048	+	0	NA	exon (NM_026254, exon 17 of 18)	exon (NM_026254, exon 17 of 18)	-4431	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding
chipseq_peak_4230	chr14	30283953	30284605	+	0	NA	intron (NM_001302637, intron 3 of 48)	intron (NM_001302637, intron 3 of 48)	69207	NM_001302637	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding
chipseq_peak_9525	chr4	13715893	13717676	+	0	NA	Intergenic	Intergenic	-26518	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_6038	chr16	77733618	77734468	+	0	NA	Intergenic	Lx8b|LINE|L1	87770	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_4614	chr14	105644183	105644517	+	0	NA	Intergenic	Intergenic	-20580	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
chipseq_peak_8997	chr3	85666653	85668010	+	0	NA	intron (NM_172682, intron 9 of 11)	intron (NM_172682, intron 9 of 11)	78878	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding
chipseq_peak_2442	chr11	80503989	80504840	+	0	NA	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	4692	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA
chipseq_peak_13300	chr9	10122833	10123352	+	0	NA	intron (NM_001170787, intron 6 of 24)	intron (NM_001170787, intron 6 of 24)	228661	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_10722	chr5	81736090	81736622	+	0	NA	intron (NM_198702, intron 20 of 27)	intron (NM_198702, intron 20 of 27)	714763	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_12744	chr8	37261467	37262061	+	0	NA	Intergenic	Intergenic	-237526	NR_126063	414128	Mm.450976	NR_126063		G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA
chipseq_peak_8782	chr3	60473776	60474380	+	0	NA	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	1248	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding
chipseq_peak_1375	chr10	27081953	27082774	+	0	NA	intron (NM_008481, intron 40 of 63)	intron (NM_008481, intron 40 of 63)	-307503	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_7288	chr19	50502883	50503183	+	0	NA	intron (NM_001252501, intron 1 of 25)	intron (NM_001252501, intron 1 of 25)	175613	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_11784	chr6	104125366	104126335	+	0	NA	Intergenic	Intergenic	-367194	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_11275	chr6	22571504	22571786	+	0	NA	Intergenic	Intergenic	-215564	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding
chipseq_peak_3130	chr12	70819864	70820451	+	0	NA	Intergenic	Intergenic	-5357	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding
chipseq_peak_13812	chr9	101458153	101458682	+	0	NA	Intergenic	Intergenic	116223	NR_110509	102633035	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA
chipseq_peak_6892	chr18	57827913	57828141	+	0	NA	Intergenic	Intergenic	-50651	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding
chipseq_peak_2712	chr12	13983798	13984231	+	0	NA	Intergenic	MIRc|SINE|MIR	168024	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding
chipseq_peak_7514	chr2	27833339	27833999	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-52756	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding
chipseq_peak_4157	chr14	14885649	14886718	+	0	NA	intron (NM_001195229, intron 22 of 34)	intron (NM_001195229, intron 22 of 34)	65368	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding
chipseq_peak_11696	chr6	98023947	98025409	+	0	NA	Intergenic	Intergenic	32895	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding
chipseq_peak_3405	chr13	7061340	7061869	+	0	NA	Intergenic	Intergenic	-412833	NM_001291071	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding
chipseq_peak_2334	chr11	46201633	46202137	+	0	NA	intron (NM_133769, intron 28 of 30)	intron (NM_133769, intron 28 of 30)	-30250	NR_105955	102465598		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA
chipseq_peak_12437	chr7	111542273	111543124	+	0	NA	intron (NM_173739, intron 6 of 10)	intron (NM_173739, intron 6 of 10)	237279	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
chipseq_peak_1079	chr1	176927061	176927332	+	0	NA	intron (NM_029756, intron 13 of 17)	intron (NM_029756, intron 13 of 17)	-91063	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_4800	chr15	12134782	12135478	+	0	NA	intron (NM_011767, intron 2 of 19)	intron (NM_011767, intron 2 of 19)	17279	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding
chipseq_peak_5498	chr16	9688400	9688984	+	0	NA	intron (NM_008170, intron 3 of 11)	intron (NM_008170, intron 3 of 11)	303841	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding
chipseq_peak_8565	chr3	29222127	29223392	+	0	NA	intron (NM_001167748, intron 4 of 12)	L1ME1|LINE|L1	140182	NM_001167748	75740	Mm.330948	NM_029412	ENSMUSG00000063600	Egfem1	6130401L20Rik|Efcab11	EGF-like and EMI domain containing 1	protein-coding
chipseq_peak_11366	chr6	34288541	34289012	+	0	NA	Intergenic	L1ME4c|LINE|L1	28667	NR_037965	626009	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo
chipseq_peak_4925	chr15	26157172	26160826	+	0	NA	Intergenic	Intergenic	-150049	NM_177597	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding
chipseq_peak_11470	chr6	48221780	48222179	+	0	NA	Intergenic	Intergenic	-135386	NM_001163475	69228	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding
chipseq_peak_2797	chr12	31521266	31521765	+	0	NA	intron (NM_011867, intron 20 of 20)	intron (NM_011867, intron 20 of 20)	-21899	NM_001253848	104836	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding
chipseq_peak_13107	chr8	97733216	97734299	+	0	NA	Intergenic	Intergenic	-1187784	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_2725	chr12	15445882	15446343	+	0	NA	Intergenic	L1MC5a|LINE|L1	354989	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA
chipseq_peak_6519	chr17	90384879	90385440	+	0	NA	intron (NM_020252, intron 17 of 22)	intron (NM_020252, intron 17 of 22)	-476010	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_7914	chr2	77686188	77686869	+	0	NA	intron (NM_178723, intron 3 of 9)	intron (NM_178723, intron 3 of 9)	16744	NM_001113399	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding
chipseq_peak_5560	chr16	26549233	26549578	+	0	NA	Intergenic	Intergenic	-22634	NM_001101640	100043057	Mm.295917	NM_001101640	ENSMUSG00000091972	Tmem207	Gm540	transmembrane protein 207	protein-coding
chipseq_peak_10944	chr5	117031988	117032482	+	0	NA	Intergenic	Intergenic	83758	NM_178622	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding
chipseq_peak_4486	chr14	84749998	84750610	+	0	NA	Intergenic	Intergenic	-273880	NR_015539	319903	Mm.440481	NR_015539		9630013A20Rik	-	RIKEN cDNA 9630013A20 gene	ncRNA
chipseq_peak_10440	chr5	43557325	43557825	+	0	NA	intron (NM_001135172, intron 1 of 2)	intron (NM_001135172, intron 1 of 2)	42006	NM_001135172	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding
chipseq_peak_3470	chr13	20723652	20724143	+	0	NA	Intergenic	Intergenic	-70216	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding
chipseq_peak_3973	chr13	102768516	102769301	+	0	NA	intron (NM_175171, intron 18 of 28)	intron (NM_175171, intron 18 of 28)	8653	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA
chipseq_peak_8029	chr2	101580122	101580871	+	0	NA	intron (NM_026592, intron 5 of 6)	intron (NM_026592, intron 5 of 6)	-44252	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
chipseq_peak_12791	chr8	43372468	43373139	+	0	NA	Intergenic	Intergenic	-65794	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding
chipseq_peak_2487	chr11	87426364	87427517	+	0	NA	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-651	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding
chipseq_peak_7452	chr2	10409641	10410340	+	0	NA	intron (NM_001198808, intron 5 of 22)	intron (NM_001198808, intron 5 of 22)	37554	NM_001198809	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding
chipseq_peak_2178	chr11	22197051	22197428	+	0	NA	intron (NM_153078, intron 5 of 24)	intron (NM_153078, intron 5 of 24)	89556	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding
chipseq_peak_11699	chr6	98095354	98095735	+	0	NA	Intergenic	Intergenic	103761	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding
chipseq_peak_6447	chr17	78274657	78276000	+	0	NA	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	75080	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
chipseq_peak_8611	chr3	38849114	38849854	+	0	NA	Intergenic	Intergenic	-37456	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT tumor suppressor homolog 4 (Drosophila)	protein-coding
chipseq_peak_4705	chr14	116543490	116544111	+	0	NA	Intergenic	L1MB7|LINE|L1	-381497	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_8137	chr2	121528991	121529322	+	0	NA	intron (NM_001290986, intron 8 of 12)	intron (NM_001290986, intron 8 of 12)	22433	NM_030234	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding
chipseq_peak_3473	chr13	21167712	21168521	+	0	NA	Intergenic	tRNA-Lys-AAA|tRNA|tRNA	-11815	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding
chipseq_peak_4231	chr14	30300107	30300621	+	0	NA	intron (NM_001302637, intron 3 of 48)	intron (NM_001302637, intron 3 of 48)	53122	NM_001302637	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding
chipseq_peak_8390	chr2	170565017	170565442	+	0	NA	Intergenic	Intergenic	36788	NR_027825	67637	Mm.158163	NM_026287	ENSMUSG00000043583	4930470P17Rik	-	RIKEN cDNA 4930470P17 gene	ncRNA
chipseq_peak_2108	chr10	128498896	128499187	+	0	NA	promoter-TSS (NR_131151)	promoter-TSS (NR_131151)	-206	NR_131150	654440	Mm.441262	NR_131150		A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA
chipseq_peak_4386	chr14	68434820	68435744	+	0	NA	Intergenic	Intergenic	98407	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding
chipseq_peak_1200	chr1	193305191	193305959	+	0	NA	intron (NM_001277928, intron 3 of 22)	MTE2a|LTR|ERVL-MaLR	3332	NM_001277928	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding
chipseq_peak_6706	chr18	30611166	30612860	+	0	NA	Intergenic	Intergenic	339117	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_6332	chr17	60136534	60136979	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-1123434	NM_026497	67993	Mm.36507	NM_026497		Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chipseq_peak_809	chr1	132650629	132651084	+	0	NA	intron (NM_182716, intron 2 of 29)	intron (NM_182716, intron 2 of 29)	-7998	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding
chipseq_peak_4654	chr14	110401817	110402562	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	352960	NM_175499	239250	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding
chipseq_peak_1191	chr1	190419677	190420088	+	0	NA	Intergenic	Intergenic	-249202	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding
chipseq_peak_7731	chr2	55692427	55694284	+	0	NA	Intergenic	UCON25|Unknown|Unknown	257385	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
chipseq_peak_13113	chr8	98572783	98573374	+	0	NA	Intergenic	Intergenic	-438809	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA
chipseq_peak_1683	chr10	69510414	69511116	+	0	NA	Intergenic	Intergenic	-22943	NM_170729	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_13090	chr8	95980476	95980789	+	0	NA	Intergenic	Intergenic	-92267	NM_010325	14719	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding
chipseq_peak_10355	chr5	21571694	21573578	+	0	NA	intron (NM_028977, intron 3 of 3)	intron (NM_028977, intron 3 of 3)	29109	NM_028977	74511	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding
chipseq_peak_13275	chr9	4738146	4738543	+	0	NA	intron (NM_001113180, intron 3 of 16)	intron (NM_001113180, intron 3 of 16)	57890	NM_019691	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding
chipseq_peak_12177	chr7	64954980	64955350	+	0	NA	intron (NM_183087, intron 2 of 9)	intron (NM_183087, intron 2 of 9)	-82125	NM_023239	66647	Mm.19944	NM_023239		Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|mage-g1	necdin-like 2	protein-coding
chipseq_peak_1189	chr1	190220326	190220830	+	0	NA	Intergenic	Intergenic	-49898	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding
chipseq_peak_3314	chr12	99822089	99823070	+	0	NA	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	60863	NM_030172	78767	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding
chipseq_peak_8619	chr3	39591131	39593437	+	0	NA	Intergenic	Intergenic	705344	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT tumor suppressor homolog 4 (Drosophila)	protein-coding
chipseq_peak_10483	chr5	49410377	49410769	+	0	NA	Intergenic	Intergenic	-124914	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
chipseq_peak_12053	chr7	34482817	34483159	+	0	NA	Intergenic	Intergenic	-93448	NM_025948	67070	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral	LSM14 homolog A (SCD6, S. cerevisiae)	protein-coding
chipseq_peak_1387	chr10	27475347	27476813	+	0	NA	intron (NM_008481, intron 1 of 63)	(TTG)n|Simple_repeat|Simple_repeat	86214	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_5978	chr16	74423351	74424401	+	0	NA	Intergenic	B3|SINE|B2	-12964	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_1909	chr10	105076754	105077435	+	0	NA	Intergenic	MIRc|SINE|MIR	497385	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
chipseq_peak_6342	chr17	62337839	62338346	+	0	NA	Intergenic	Intergenic	543225	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_9563	chr4	17635522	17636826	+	0	NA	Intergenic	Intergenic	-217308	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_1512	chr10	44883153	44883379	+	0	NA	Intergenic	Intergenic	-183948	NM_011156	19072	Mm.37294	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding
chipseq_peak_13474	chr9	41327969	41328250	+	0	NA	Intergenic	Intergenic	-48417	NR_131929	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA
chipseq_peak_3622	chr13	48528630	48528980	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	7309	NR_029656	387247		NR_029656	ENSMUSG00000065453	Mirlet7d	Mirnlet7d|let-7d|mmu-let-7d	microRNA let7d	ncRNA
chipseq_peak_12294	chr7	89140662	89141144	+	0	NA	3' UTR (NM_028343, exon 15 of 15)	3' UTR (NM_028343, exon 15 of 15)	197884	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding
chipseq_peak_9548	chr4	15384829	15385928	+	0	NA	Intergenic	Intergenic	119558	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding
chipseq_peak_6780	chr18	43028695	43029291	+	0	NA	intron (NM_028392, intron 1 of 8)	L1MEc|LINE|L1	30478	NM_028392	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
chipseq_peak_12256	chr7	77988087	77988749	+	0	NA	Intergenic	Intergenic	589420	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
chipseq_peak_11948	chr6	138800640	138802629	+	0	NA	Intergenic	Intergenic	-143190	NM_015777	50540	Mm.84043	NM_015777	ENSMUSG00000046717	Igbp1b	alpha4-b	immunoglobulin (CD79A) binding protein 1b	protein-coding
chipseq_peak_10104	chr4	104509405	104509788	+	0	NA	intron (NR_104385, intron 2 of 15)	X5A_LINE|LINE|CR1	142058	NR_104385	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
chipseq_peak_370	chr1	55990568	55991437	+	0	NA	Intergenic	Intergenic	-27976	NR_126076	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_12277	chr7	83358670	83359307	+	0	NA	Intergenic	Intergenic	-225943	NM_177695	233424	Mm.486619	NM_177695		Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding
chipseq_peak_2307	chr11	41702873	41703591	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	297482	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding
chipseq_peak_475	chr1	69329251	69329898	+	0	NA	Intergenic	Intergenic	-221515	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chipseq_peak_13959	chr9	122420085	122420340	+	0	NA	Intergenic	Intergenic	-21411	NR_045967	654800	Mm.393956	NR_045967		A730085K08Rik	-	RIKEN cDNA A730085K08 gene	ncRNA
chipseq_peak_10769	chr5	85987130	85987873	+	0	NA	Intergenic	Intergenic	78082	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_12025	chr6	148571514	148572597	+	0	NA	Intergenic	Intergenic	42254	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
chipseq_peak_3916	chr13	96405487	96406030	+	0	NA	intron (NM_026173, intron 11 of 12)	intron (NM_026173, intron 11 of 12)	17464	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein homolog (Chlamydomonas)	protein-coding
chipseq_peak_940	chr1	153881367	153882007	+	0	NA	Intergenic	ORR1E-int|LTR|ERVL-MaLR	7342	NM_001008426	433365	Mm.229362	NM_001008426	ENSMUSG00000043282	Teddm1b	EG433365|Gm5531	transmembrane epididymal protein 1B	protein-coding
chipseq_peak_2113	chr11	4421897	4422187	+	0	NA	intron (NM_029458, intron 5 of 10)	intron (NM_029458, intron 5 of 10)	19040	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding
chipseq_peak_8804	chr3	63791084	63791394	+	0	NA	intron (NM_183191, intron 1 of 22)	intron (NM_183191, intron 1 of 22)	59752	NM_183191	269437	Mm.316391	NM_183191	ENSMUSG00000036834	Plch1	BC042549|PLC-eta-1|PLCeta1|Plcl3	phospholipase C, eta 1	protein-coding
chipseq_peak_11326	chr6	31933528	31933878	+	0	NA	Intergenic	Intergenic	-116585	NM_029587	76382	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding
chipseq_peak_5039	chr15	43758201	43758600	+	0	NA	Intergenic	Intergenic	111629	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
chipseq_peak_11649	chr6	87349266	87349726	+	0	NA	intron (NM_025466, intron 1 of 5)	intron (NM_025466, intron 1 of 5)	1419	NM_025466	66283	Mm.46414	NM_025466	ENSMUSG00000030050	Gkn1	2200002K21Rik|AMP-18|BRICD1|Fov	gastrokine 1	protein-coding
chipseq_peak_4088	chr13	114138879	114139522	+	0	NA	intron (NR_045836, intron 7 of 13)	intron (NR_045836, intron 7 of 13)	12392	NR_045836	319803	Mm.386896	NM_177004		A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA
chipseq_peak_10332	chr5	18085423	18085857	+	0	NA	Intergenic	Intergenic	123070	NM_001081143	242851	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding
chipseq_peak_2337	chr11	47304795	47305012	+	0	NA	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	74399	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding
chipseq_peak_13521	chr9	48504247	48505553	+	0	NA	Intergenic	Intergenic	9557	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding
chipseq_peak_12195	chr7	71355454	71355992	+	0	NA	Intergenic	L1M3|LINE|L1	-553972	NR_130995	78156	Mm.243818	NR_130995		4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA
chipseq_peak_7236	chr19	37175491	37176399	+	0	NA	5' UTR (NM_001290826, exon 1 of 11)	5' UTR (NM_001290826, exon 1 of 11)	118	NM_001290826	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding
chipseq_peak_8711	chr3	53379619	53380062	+	0	NA	Intergenic	Intergenic	83418	NM_172501	212114	Mm.85744	NM_172501		Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding
chipseq_peak_11369	chr6	34540884	34541378	+	0	NA	Intergenic	Intergenic	64775	NM_007563	12183	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding
chipseq_peak_1799	chr10	92895986	92896407	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	-173778	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding
chipseq_peak_5026	chr15	42309681	42310432	+	0	NA	Intergenic	Intergenic	366921	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
chipseq_peak_319	chr1	48942648	48944404	+	0	NA	Intergenic	Intergenic	-1476401	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_9847	chr4	64597925	64599103	+	0	NA	Intergenic	Intergenic	-525660	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding
chipseq_peak_3440	chr13	16283081	16283820	+	0	NA	Intergenic	Intergenic	268975	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_13361	chr9	25175090	25175490	+	0	NA	Intergenic	Intergenic	-23509	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding
chipseq_peak_11715	chr6	98485524	98487771	+	0	NA	Intergenic	MIR|SINE|MIR	-143893	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_9188	chr3	123160862	123161224	+	0	NA	intron (NM_080451, intron 1 of 4)	intron (NM_080451, intron 1 of 4)	75106	NM_080451	118449	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding
chipseq_peak_13913	chr9	113087738	113088576	+	0	NA	Intergenic	Intergenic	498995	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_1108	chr1	177348516	177348973	+	0	NA	Intergenic	Charlie23a|DNA|hAT-Charlie	-95917	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_7362	chr2	4509576	4509996	+	0	NA	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-49968	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding
chipseq_peak_6331	chr17	59520257	59521431	+	0	NA	Intergenic	Intergenic	-507522	NM_026497	67993	Mm.36507	NM_026497		Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chipseq_peak_13867	chr9	107259446	107259910	+	0	NA	intron (NM_001316691, intron 5 of 7)	intron (NM_001316691, intron 5 of 7)	-27769	NM_153413	208869	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding
chipseq_peak_2116	chr11	5375132	5376048	+	0	NA	intron (NM_001290501, intron 1 of 8)	GA-rich|Low_complexity|Low_complexity	6150	NM_001290501	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding
chipseq_peak_7351	chr2	3942289	3942773	+	0	NA	Intergenic	Intergenic	198610	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA
chipseq_peak_11053	chr5	133889674	133890532	+	0	NA	Intergenic	Intergenic	-209645	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
chipseq_peak_7261	chr19	45458188	45458744	+	0	NA	intron (NM_001037758, intron 3 of 14)	intron (NM_001037758, intron 3 of 14)	94732	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding
chipseq_peak_8121	chr2	115860732	115862074	+	0	NA	3' UTR (NM_010825, exon 12 of 12)	3' UTR (NM_010825, exon 12 of 12)	203218	NM_001159569	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding
chipseq_peak_8463	chr3	13270209	13271403	+	0	NA	Intergenic	Intergenic	-200849	NM_178631	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding
chipseq_peak_3752	chr13	81778080	81778508	+	0	NA	Intergenic	Intergenic	-4998	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_3239	chr12	85364988	85365312	+	0	NA	intron (NM_026775, intron 1 of 4)	(TTAA)n|Simple_repeat|Simple_repeat	9567	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane emp24-like trafficking protein 10 (yeast)	protein-coding
chipseq_peak_11756	chr6	102600731	102601800	+	0	NA	Intergenic	L2c|LINE|L2	-136598	NM_008779	18488	Mm.435479	NM_008779	ENSMUSG00000030075	Cntn3	Pang	contactin 3	protein-coding
chipseq_peak_10799	chr5	91587584	91588195	+	0	NA	intron (NM_145562, intron 1 of 3)	intron (NM_145562, intron 1 of 3)	70189	NM_145562	231440	Mm.5002	NM_145562		Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding
chipseq_peak_9589	chr4	20669857	20670984	+	0	NA	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	108248	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding
chipseq_peak_1629	chr10	64824705	64825014	+	0	NA	intron (NM_001164376, intron 13 of 17)	intron (NM_001164376, intron 13 of 17)	-734604	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_562	chr1	80710681	80711065	+	0	NA	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-45521	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding
chipseq_peak_8577	chr3	30249080	30249429	+	0	NA	intron (NM_021442, intron 1 of 2)	MER2|DNA|TcMar-Tigger	-236050	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding
chipseq_peak_8006	chr2	97466263	97467437	+	0	NA	promoter-TSS (NM_178725)	promoter-TSS (NM_178725)	-807	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_434	chr1	61879365	61879944	+	0	NA	intron (NM_001081050, intron 2 of 22)	intron (NM_001081050, intron 2 of 22)	240830	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
chipseq_peak_9405	chr3	154816330	154817893	+	0	NA	intron (NM_177066, intron 23 of 24)	intron (NM_177066, intron 23 of 24)	105978	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
chipseq_peak_108	chr1	23575810	23576390	+	0	NA	Intergenic	Intergenic	-185826	NM_172124	280645	Mm.471661	NM_172124		B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding
chipseq_peak_10604	chr5	66500893	66501197	+	0	NA	intron (NM_001310626, intron 2 of 15)	intron (NM_001310626, intron 2 of 15)	117772	NM_001201413	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
chipseq_peak_3439	chr13	16235758	16237446	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	222127	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_12028	chr6	148622555	148622944	+	0	NA	Intergenic	Intergenic	-8440	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
chipseq_peak_8011	chr2	98123301	98124062	+	0	NA	Intergenic	Intergenic	656024	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_9843	chr4	63267124	63267590	+	0	NA	intron (NM_025685, intron 14 of 60)	intron (NM_025685, intron 14 of 60)	10506	NR_030477	735262		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA
chipseq_peak_1718	chr10	74130805	74131258	+	0	NA	intron (NM_001142735, intron 3 of 32)	intron (NM_001142735, intron 3 of 32)	309164	NM_001142738	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
chipseq_peak_13103	chr8	97216842	97217410	+	0	NA	Intergenic	Intergenic	-671153	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_4516	chr14	88921767	88922414	+	0	NA	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-450694	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_12304	chr7	89726388	89727734	+	0	NA	intron (NM_181407, intron 1 of 13)	intron (NM_181407, intron 1 of 13)	94243	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
chipseq_peak_2011	chr10	115171270	115171753	+	0	NA	intron (NM_173391, intron 5 of 10)	intron (NM_173391, intron 5 of 10)	13511	NM_173391	216343	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding
chipseq_peak_4569	chr14	95983995	95984465	+	0	NA	Intergenic	Intergenic	102964	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding
chipseq_peak_8362	chr2	161981982	161982962	+	0	NA	intron (NM_001291150, intron 7 of 30)	L1MEd|LINE|L1	-408341	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA
chipseq_peak_3772	chr13	82565017	82565385	+	0	NA	Intergenic	Intergenic	133132	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_34	chr1	11116762	11117622	+	0	NA	intron (NM_029525, intron 11 of 39)	intron (NM_029525, intron 11 of 39)	123727	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding
chipseq_peak_13480	chr9	41611985	41614382	+	0	NA	non-coding (NR_131930, exon 4 of 4)	non-coding (NR_131930, exon 4 of 4)	31257	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA
chipseq_peak_2226	chr11	26883442	26884296	+	0	NA	Intergenic	Intergenic	98761	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_7342	chr19	60463979	60464519	+	0	NA	Intergenic	Intergenic	4055	NM_201615	226278	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding
chipseq_peak_10697	chr5	78059368	78060460	+	0	NA	Intergenic	Intergenic	594426	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
chipseq_peak_13029	chr8	81825016	81825445	+	0	NA	intron (NM_001024617, intron 7 of 24)	intron (NM_001024617, intron 7 of 24)	482668	NM_001024617	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding
chipseq_peak_1159	chr1	185847125	185847510	+	0	NA	intron (NR_030555, intron 4 of 6)	intron (NR_030555, intron 4 of 6)	269993	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding
chipseq_peak_9474	chr4	7268966	7269908	+	0	NA	Intergenic	Intergenic	-278714	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_10465	chr5	45341037	45341915	+	0	NA	intron (NR_131933, intron 1 of 5)	intron (NR_131933, intron 1 of 5)	82924	NR_131933	52401	Mm.33854	NR_131933		D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA
chipseq_peak_5529	chr16	22327181	22327882	+	0	NA	Intergenic	Lx8b|LINE|L1	-61602	NM_009186	20462	Mm.210352	NM_009186		Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding
chipseq_peak_11305	chr6	26804671	26805078	+	0	NA	Intergenic	Intergenic	873448	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA
chipseq_peak_6192	chr17	11617418	11618046	+	0	NA	intron (NM_016694, intron 6 of 11)	L1MA8|LINE|L1	265457	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA
chipseq_peak_6169	chr17	5400402	5400729	+	0	NA	Intergenic	Intergenic	18202	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding
chipseq_peak_10987	chr5	126254536	126254994	+	0	NA	Intergenic	Intergenic	722347	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding
chipseq_peak_11448	chr6	45791569	45792039	+	0	NA	intron (NM_001004357, intron 3 of 23)	intron (NM_001004357, intron 3 of 23)	731743	NM_001004357	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_9966	chr4	80832494	80834390	+	0	NA	promoter-TSS (NM_031202)	promoter-TSS (NM_031202)	-771	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_6716	chr18	31137380	31138027	+	0	NA	intron (NM_009065, intron 4 of 4)	intron (NM_009065, intron 4 of 4)	179425	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_4635	chr14	108152831	108153685	+	0	NA	Intergenic	Intergenic	760981	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_1438	chr10	32576885	32577849	+	0	NA	intron (NM_001013411, intron 1 of 6)	intron (NM_001013411, intron 1 of 6)	312548	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
chipseq_peak_794	chr1	130835070	130835972	+	0	NA	intron (NM_011082, intron 2 of 10)	intron (NM_011082, intron 2 of 10)	8837	NM_011082	18703	Mm.276414	NM_011082	ENSMUSG00000026417	Pigr	-	polymeric immunoglobulin receptor	protein-coding
chipseq_peak_6291	chr17	51182673	51183205	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-3587	NM_001285991	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding
chipseq_peak_10812	chr5	97300553	97302727	+	0	NA	Intergenic	Intergenic	90690	NM_001033191	97243	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding
chipseq_peak_5249	chr15	66475862	66477284	+	0	NA	intron (NM_019457, intron 3 of 11)	HAL1ME|LINE|L1	24337	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding
chipseq_peak_9080	chr3	110930220	110930572	+	0	NA	Intergenic	Intergenic	-679397	NM_178891	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding
chipseq_peak_1502	chr10	43279293	43280390	+	0	NA	intron (NM_027772, intron 1 of 7)	intron (NM_027772, intron 1 of 7)	58355	NM_027772	71365	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding
chipseq_peak_12912	chr8	58182651	58183332	+	0	NA	intron (NM_175032, intron 4 of 11)	intron (NM_175032, intron 4 of 11)	517805	NM_001177534	100271928	Mm.484123	NM_001177534		Gm15881	OTTMUSG00000027193	predicted gene 15881	protein-coding
chipseq_peak_1734	chr10	82908523	82908949	+	0	NA	Intergenic	L1MD|LINE|L1	42110	NM_025499	66341	Mm.443284	NM_025499		Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding
chipseq_peak_3593	chr13	46010065	46010426	+	0	NA	Intergenic	Intergenic	-45254	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding
chipseq_peak_7852	chr2	66256740	66257344	+	0	NA	promoter-TSS (NM_001047604)	promoter-TSS (NM_001047604)	-425	NM_001047604	73668	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding
chipseq_peak_5396	chr15	92821229	92822067	+	0	NA	Intergenic	Intergenic	224539	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
chipseq_peak_11897	chr6	120038953	120040297	+	0	NA	promoter-TSS (NM_001185020)	promoter-TSS (NM_001185020)	-970	NM_001185021	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding
chipseq_peak_13020	chr8	78838706	78839143	+	0	NA	Intergenic	Intergenic	-17772	NM_001191004	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
chipseq_peak_5188	chr15	60656328	60658361	+	0	NA	Intergenic	Intergenic	-165621	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA
chipseq_peak_5660	chr16	41900421	41901889	+	0	NA	intron (NM_175548, intron 2 of 5)	intron (NM_175548, intron 2 of 5)	367813	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_1466	chr10	38010430	38010900	+	0	NA	Intergenic	Intergenic	-165109	NR_131035	75877	Mm.402094	NR_131035		4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA
chipseq_peak_7557	chr2	37973066	37973735	+	0	NA	intron (NM_146122, intron 11 of 21)	intron (NM_146122, intron 11 of 21)	197151	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding
chipseq_peak_13207	chr8	113369439	113370165	+	0	NA	Intergenic	Intergenic	-147480	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA
chipseq_peak_5544	chr16	25016293	25017829	+	0	NA	Intergenic	Intergenic	-42578	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA
chipseq_peak_10205	chr4	139926028	139926515	+	0	NA	TTS (NR_045160)	TTS (NR_045160)	6803	NR_045160	71235	Mm.61253	NR_045159	ENSMUSG00000085928	4933427I22Rik	-	RIKEN cDNA 4933427I22 gene	ncRNA
chipseq_peak_6860	chr18	55015190	55016615	+	0	NA	Intergenic	Intergenic	-25722	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_8580	chr3	31793663	31794514	+	0	NA	Intergenic	Intergenic	-108615	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding
chipseq_peak_4696	chr14	115473541	115473905	+	0	NA	intron (NM_175500, intron 5 of 7)	intron (NM_175500, intron 5 of 7)	-64171	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA
chipseq_peak_5943	chr16	72908885	72909990	+	0	NA	intron (NM_019413, intron 3 of 28)	intron (NM_019413, intron 3 of 28)	246288	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_5690	chr16	43947840	43948097	+	0	NA	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	31082	NM_001007460	332175	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding
chipseq_peak_4208	chr14	27269754	27270065	+	0	NA	intron (NM_001289686, intron 4 of 12)	intron (NM_001289686, intron 4 of 12)	31899	NM_027871	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding
chipseq_peak_5990	chr16	75213967	75214954	+	0	NA	Intergenic	Intergenic	371601	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_7624	chr2	44299047	44300673	+	0	NA	intron (NM_001301832, intron 13 of 14)	intron (NM_001301832, intron 13 of 14)	-234536	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_7976	chr2	92278215	92279002	+	0	NA	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	57046	NM_001109690	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding
chipseq_peak_6294	chr17	51778017	51778362	+	0	NA	intron (NM_009122, intron 7 of 10)	intron (NM_009122, intron 7 of 10)	33865	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding
chipseq_peak_6162	chr17	4841482	4842324	+	0	NA	Intergenic	Intergenic	-153171	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding
chipseq_peak_9362	chr3	149841543	149842483	+	0	NA	Intergenic	Intergenic	567276	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_7536	chr2	33542538	33543553	+	0	NA	Intergenic	Intergenic	-74513	NM_001025594	71834	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding
chipseq_peak_12999	chr8	75659320	75659796	+	0	NA	intron (NM_001164235, intron 7 of 13)	intron (NM_001164235, intron 7 of 13)	210864	NM_027944	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding
chipseq_peak_11451	chr6	46362073	46362777	+	0	NA	intron (NM_001004357, intron 11 of 23)	intron (NM_001004357, intron 11 of 23)	-881971	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_569	chr1	82793800	82794298	+	0	NA	Intergenic	Intergenic	-25593	NM_025453	66261	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding
chipseq_peak_1435	chr10	32182429	32183442	+	0	NA	intron (NM_001013411, intron 3 of 6)	intron (NM_001013411, intron 3 of 6)	-573210	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
chipseq_peak_6659	chr18	23586164	23586757	+	0	NA	intron (NM_207650, intron 6 of 20)	B4|SINE|B4	88978	NM_001285808	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding
chipseq_peak_9007	chr3	86745335	86745624	+	0	NA	intron (NM_001077687, intron 50 of 50)	intron (NM_001077687, intron 50 of 50)	175405	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
chipseq_peak_7327	chr19	57768686	57769222	+	0	NA	intron (NM_181415, intron 24 of 28)	intron (NM_181415, intron 24 of 28)	157920	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding
chipseq_peak_431	chr1	61111652	61112182	+	0	NA	Intergenic	Intergenic	134003	NM_017480	54167	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding
chipseq_peak_3193	chr12	77498682	77498982	+	0	NA	Intergenic	Intergenic	88691	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding
chipseq_peak_9926	chr4	77435503	77437785	+	0	NA	intron (NM_011211, intron 4 of 39)	L1M3|LINE|L1	775251	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_12628	chr8	10366428	10366973	+	0	NA	intron (NM_001081397, intron 5 of 35)	intron (NM_001081397, intron 5 of 35)	212777	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
chipseq_peak_3551	chr13	42627222	42628215	+	0	NA	Intergenic	L1M5|LINE|L1	-53081	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_13799	chr9	97941510	97941923	+	0	NA	intron (NM_022319, intron 1 of 17)	intron (NM_022319, intron 1 of 17)	-61704	NR_110443	66737	Mm.445908	NR_110443	ENSMUSG00000090255	4921534H16Rik	-	RIKEN cDNA 4921534H16 gene	ncRNA
chipseq_peak_6423	chr17	74507750	74508406	+	0	NA	Intergenic	Intergenic	18585	NM_026417	67864	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding
chipseq_peak_8176	chr2	131864242	131864600	+	0	NA	Intergenic	Intergenic	-4674	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding
chipseq_peak_3599	chr13	46153231	46153919	+	0	NA	Intergenic	Intergenic	-120146	NM_001005422	380842	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding
chipseq_peak_7175	chr19	26987417	26988451	+	0	NA	Intergenic	Intergenic	102009	NM_001033407	329047	Mm.293289	NM_001033407	ENSMUSG00000074913	Gm815	-	predicted gene 815	protein-coding
chipseq_peak_8589	chr3	34173550	34174052	+	0	NA	Intergenic	Intergenic	-92447	NM_001286972	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ (Hsp40) homolog, subfamily C, member 19	protein-coding
chipseq_peak_11769	chr6	103656621	103657247	+	0	NA	intron (NM_007697, intron 5 of 26)	intron (NM_007697, intron 5 of 26)	146058	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_11579	chr6	71270901	71271665	+	0	NA	promoter-TSS (NR_106192)	promoter-TSS (NR_106192)	-388	NR_106192	102465900		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA
chipseq_peak_11069	chr5	138160809	138161142	+	0	NA	promoter-TSS (NM_012002)	promoter-TSS (NM_012002)	-127	NM_012002	26893	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana)	protein-coding
chipseq_peak_3295	chr12	96858403	96858700	+	0	NA	Intergenic	L1M2|LINE|L1	-811329	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo
chipseq_peak_2592	chr11	110935779	110936161	+	0	NA	Intergenic	Intergenic	-32063	NM_010604	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
chipseq_peak_6160	chr17	4464300	4464883	+	0	NA	Intergenic	L1MC4a|LINE|L1	-170389	NR_130984	75117	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA
chipseq_peak_13973	chrX	21951355	21951635	+	0	NA	Intergenic	Intergenic	236595	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding
chipseq_peak_3515	chr13	29460971	29461235	+	0	NA	intron (NR_131896, intron 12 of 16)	intron (NR_131896, intron 12 of 16)	394570	NM_144536	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
chipseq_peak_6012	chr16	75853763	75854587	+	0	NA	Intergenic	Intergenic	55091	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding
chipseq_peak_10343	chr5	20133752	20134418	+	0	NA	intron (NM_001170745, intron 2 of 20)	intron (NM_001170745, intron 2 of 20)	226567	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
chipseq_peak_8183	chr2	132377281	132377792	+	0	NA	intron (NM_144944, intron 2 of 2)	intron (NM_144944, intron 2 of 2)	7911	NM_144944	246313	Mm.283777	NM_144944	ENSMUSG00000050558	Prokr2	B830005M06Rik|EG-VEGRF2|Gpcr73l1|Gpr73l1|PKR2	prokineticin receptor 2	protein-coding
chipseq_peak_7882	chr2	71039646	71040021	+	0	NA	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	15773	NM_145524	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding
chipseq_peak_11719	chr6	99047846	99048331	+	0	NA	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	-19790	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
chipseq_peak_8731	chr3	54291201	54292444	+	0	NA	intron (NM_016984, intron 6 of 10)	intron (NM_016984, intron 6 of 10)	-69285	NM_001313898	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding
chipseq_peak_13289	chr9	8606955	8607220	+	0	NA	intron (NM_013838, intron 1 of 12)	intron (NM_013838, intron 1 of 12)	62945	NM_013838	22068	Mm.325086	NM_013838	ENSMUSG00000031997	Trpc6	AV025995|LLHWJM002|LLHWJM003|LLHWJM004|TRP-6|Trrp6|mtrp6	transient receptor potential cation channel, subfamily C, member 6	protein-coding
chipseq_peak_2152	chr11	15406194	15407560	+	0	NA	Intergenic	Intergenic	807637	NM_001164166	432536	Mm.33646	NM_001164166		Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding
chipseq_peak_7719	chr2	53948346	53948671	+	0	NA	Intergenic	Intergenic	137044	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
chipseq_peak_11089	chr5	143607987	143608939	+	0	NA	Intergenic	L1MB5|LINE|L1	-13984	NM_011182	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding
chipseq_peak_6867	chr18	55291576	55291885	+	0	NA	Intergenic	Intergenic	-301550	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_3578	chr13	45049296	45050105	+	0	NA	Intergenic	Intergenic	-47604	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding
chipseq_peak_9129	chr3	117822903	117823834	+	0	NA	intron (NM_029655, intron 7 of 8)	intron (NM_029655, intron 7 of 8)	45568	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_6554	chr17	94054366	94054982	+	0	NA	Intergenic	Intergenic	695218	NM_176917	76781	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding
chipseq_peak_7469	chr2	14132403	14133484	+	0	NA	intron (NM_011484, intron 8 of 13)	intron (NM_011484, intron 8 of 13)	-41581	NM_001081310	625286	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding
chipseq_peak_3673	chr13	59577212	59577667	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	7784	NR_045633	319469	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA
chipseq_peak_8405	chr2	170859621	170861676	+	0	NA	intron (NM_001163686, intron 6 of 7)	intron (NM_001163686, intron 6 of 7)	128841	NM_029761	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding
chipseq_peak_9867	chr4	70032416	70032981	+	0	NA	Intergenic	Intergenic	377737	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding
chipseq_peak_7341	chr19	60372166	60372526	+	0	NA	Intergenic	Intergenic	95958	NM_201615	226278	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding
chipseq_peak_10167	chr4	125428571	125428974	+	0	NA	Intergenic	Intergenic	-62059	NM_001081097	14807	Mm.40896	NM_001081097	ENSMUSG00000001985	Grik3	9630027E11|GluK3|GluR7-3|Glur-7|Glur7	glutamate receptor, ionotropic, kainate 3	protein-coding
chipseq_peak_4734	chr14	119665469	119665911	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	-83537	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA
chipseq_peak_4958	chr15	30887531	30887874	+	0	NA	intron (NM_008729, intron 14 of 22)	intron (NM_008729, intron 14 of 22)	-151424	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA
chipseq_peak_4457	chr14	79939678	79939940	+	0	NA	Intergenic	Intergenic	-60493	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_8673	chr3	48846104	48846746	+	0	NA	Intergenic	Intergenic	-237325	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo
chipseq_peak_8765	chr3	56499144	56500463	+	0	NA	Intergenic	Intergenic	-316102	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_2436	chr11	78697453	78698293	+	0	NA	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-448	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding
chipseq_peak_12607	chr8	8274217	8275111	+	0	NA	Intergenic	Intergenic	386109	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_1632	chr10	65118024	65118647	+	0	NA	Intergenic	Intergenic	1005729	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA
chipseq_peak_12094	chr7	49953567	49953949	+	0	NA	intron (NM_001146013, intron 14 of 15)	intron (NM_001146013, intron 14 of 15)	-21592	NM_001037906	338352	Mm.383528	NM_001037906	ENSMUSG00000055409	Nell1	B230343H07Rik|l7R6	NEL-like 1	protein-coding
chipseq_peak_8908	chr3	78995289	78995664	+	0	NA	Intergenic	Intergenic	149411	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_5146	chr15	54923485	54923895	+	0	NA	Intergenic	Intergenic	-3544	NM_001285995	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding
chipseq_peak_8300	chr2	143331989	143332598	+	0	NA	Intergenic	Intergenic	-213840	NM_008792	18549	Mm.294493	NM_008792	ENSMUSG00000027419	Pcsk2	6330411F23Rik|AI839700|Nec-2|Nec2|PC2|Phpp-2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding
chipseq_peak_13623	chr9	61092628	61093418	+	0	NA	Intergenic	Intergenic	12363	NR_105026	66785	Mm.158134	NR_105026		4933433G08Rik	-	RIKEN cDNA 4933433G08 gene	ncRNA
chipseq_peak_3325	chr12	100988307	100989454	+	0	NA	intron (NM_026681, intron 3 of 29)	intron (NM_026681, intron 3 of 29)	32888	NR_035421	100316805		NR_035421	ENSMUSG00000080575	Mir1190	Mirn1190|mmu-mir-1190	microRNA 1190	ncRNA
chipseq_peak_3469	chr13	20647465	20648172	+	0	NA	Intergenic	Intergenic	-146295	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding
chipseq_peak_12066	chr7	37388850	37390682	+	0	NA	Intergenic	Intergenic	379986	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding
chipseq_peak_4645	chr14	108702129	108702575	+	0	NA	Intergenic	Intergenic	211887	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_11006	chr5	129521069	129521817	+	0	NA	intron (NM_172276, intron 7 of 17)	Tigger13a|DNA|TcMar-Tigger	20212	NM_172276	231769	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding
chipseq_peak_3997	chr13	106561723	106562727	+	0	NA	Intergenic	Intergenic	374690	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding
chipseq_peak_9581	chr4	19905732	19906161	+	0	NA	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	16620	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding
chipseq_peak_11160	chr6	9941974	9942474	+	0	NA	Intergenic	Intergenic	992205	NM_008751	18231	Mm.46954	NM_008751		Nxph1	C130005L03Rik	neurexophilin 1	protein-coding
chipseq_peak_6734	chr18	33380868	33383110	+	0	NA	Intergenic	Intergenic	81645	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
chipseq_peak_2125	chr11	9128108	9128527	+	0	NA	intron (NM_001159401, intron 3 of 8)	MER58A|DNA|hAT-Charlie	9810	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding
chipseq_peak_13505	chr9	44396596	44397045	+	0	NA	promoter-TSS (NM_001293631)	promoter-TSS (NM_001293631)	-107	NM_001293631	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding
chipseq_peak_8690	chr3	50461916	50462677	+	0	NA	Intergenic	Intergenic	-18683	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
chipseq_peak_7358	chr2	4306882	4307590	+	0	NA	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-93740	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding
chipseq_peak_3361	chr12	117661316	117661957	+	0	NA	intron (NM_175930, intron 11 of 27)	intron (NM_175930, intron 11 of 27)	145157	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chipseq_peak_10432	chr5	40929064	40930176	+	0	NA	Intergenic	Intergenic	778071	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding
chipseq_peak_572	chr1	82918477	82918869	+	0	NA	Intergenic	Intergenic	79213	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding
chipseq_peak_8649	chr3	42891970	42892955	+	0	NA	Intergenic	Intergenic	1149844	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
chipseq_peak_8438	chr3	8137088	8137426	+	0	NA	Intergenic	Intergenic	-182370	NR_040587	75476	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA
chipseq_peak_1421	chr10	30446504	30447008	+	0	NA	Intergenic	Intergenic	153993	NM_028604	73681	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding
chipseq_peak_5196	chr15	61764810	61765217	+	0	NA	intron (NR_040350, intron 2 of 4)	intron (NR_040350, intron 2 of 4)	9438	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA
chipseq_peak_209	chr1	34709077	34709581	+	0	NA	Intergenic	Intergenic	-73119	NR_033627	241051	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo
chipseq_peak_9082	chr3	111386057	111387184	+	0	NA	Intergenic	Intergenic	-495283	NR_045362	625585	Mm.389497	NR_045362	ENSMUSG00000104543	Gm6602	-	predicted gene 6602	ncRNA
chipseq_peak_11107	chr5	147084846	147085752	+	0	NA	intron (NM_181730, intron 1 of 2)	intron (NM_181730, intron 1 of 2)	7953	NM_009087	20018	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding
chipseq_peak_9996	chr4	85483675	85484366	+	0	NA	Intergenic	Intergenic	278564	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding
chipseq_peak_7833	chr2	65566449	65568053	+	0	NA	intron (NM_018732, intron 1 of 26)	intron (NM_018732, intron 1 of 26)	241	NM_018732	20269	Mm.330256	NM_018732	ENSMUSG00000057182	Scn3a	Gm1000|Nav1.3	sodium channel, voltage-gated, type III, alpha	protein-coding
chipseq_peak_1547	chr10	49979955	49980832	+	0	NA	Intergenic	Intergenic	-191639	NM_010349	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding
chipseq_peak_11278	chr6	22824636	22825508	+	0	NA	Intergenic	Intergenic	-50430	NM_001081306	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding
chipseq_peak_10591	chr5	65024762	65025635	+	0	NA	intron (NM_026667, intron 8 of 13)	intron (NM_026667, intron 8 of 13)	54880	NR_030577	100124451		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA
chipseq_peak_6894	chr18	58123452	58124435	+	0	NA	intron (NM_010181, intron 8 of 64)	intron (NM_010181, intron 8 of 64)	85983	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding
chipseq_peak_3862	chr13	90223288	90223597	+	0	NA	Intergenic	Intergenic	133775	NM_025335	66074	Mm.241387	NM_025335		Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding
chipseq_peak_10190	chr4	132533656	132534067	+	0	NA	5' UTR (NM_007512, exon 2 of 4)	5' UTR (NM_007512, exon 2 of 4)	1553	NM_007512	11983	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding
chipseq_peak_6166	chr17	5083546	5084511	+	0	NA	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	88954	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding
chipseq_peak_8712	chr3	53415427	53417197	+	0	NA	Intergenic	Intergenic	46946	NM_172501	212114	Mm.85744	NM_172501		Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding
chipseq_peak_12649	chr8	15487638	15488184	+	0	NA	Intergenic	Intergenic	430258	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding
chipseq_peak_1221	chr1	194334954	194335444	+	0	NA	Intergenic	Intergenic	-112440	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_8172	chr2	130961893	130962846	+	0	NA	intron (NM_009730, intron 10 of 28)	L1MB2|LINE|L1	55873	NM_009730	11990	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mKIAA0548|mahogany|mg	attractin	protein-coding
chipseq_peak_5878	chr16	67095369	67095784	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	438458	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA
chipseq_peak_10852	chr5	102439633	102439954	+	0	NA	Intergenic	Intergenic	-41598	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
chipseq_peak_10651	chr5	71972771	71973070	+	0	NA	intron (NM_008069, intron 4 of 8)	intron (NM_008069, intron 4 of 8)	195263	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding
chipseq_peak_4976	chr15	32717503	32717931	+	0	NA	Intergenic	L1ME1|LINE|L1	-203006	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding
chipseq_peak_3720	chr13	77152995	77153781	+	0	NA	intron (NM_001081353, intron 1 of 3)	intron (NM_001081353, intron 1 of 3)	17852	NM_001145676	72371	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding
chipseq_peak_3756	chr13	81856147	81856526	+	0	NA	Intergenic	Intergenic	73044	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_12485	chr7	120684317	120685512	+	0	NA	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	7294	NM_001164580	233812	Mm.276479	NM_001164580	ENSMUSG00000046096	BC030336	-	cDNA sequence BC030336	protein-coding
chipseq_peak_14125	chrX	161511072	161511435	+	0	NA	Intergenic	Intergenic	-205783	NM_001103367	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding
chipseq_peak_11768	chr6	103558253	103559369	+	0	NA	intron (NM_007697, intron 1 of 26)	intron (NM_007697, intron 1 of 26)	47935	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_9167	chr3	120570647	120571823	+	0	NA	intron (NR_130170, intron 12 of 18)	intron (NR_130170, intron 12 of 18)	315497	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_9794	chr4	51969394	51970575	+	0	NA	non-coding (NR_040668, exon 3 of 3)	non-coding (NR_040668, exon 3 of 3)	81126	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA
chipseq_peak_8647	chr3	42783590	42783964	+	0	NA	Intergenic	Intergenic	1041159	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
chipseq_peak_6724	chr18	31446061	31449475	+	0	NA	promoter-TSS (NM_009308)	promoter-TSS (NM_009308)	-353	NM_009308	20983	Mm.233846	NM_009308	ENSMUSG00000024261	Syt4	SytIV	synaptotagmin IV	protein-coding
chipseq_peak_12552	chr7	133608770	133609925	+	0	NA	Intergenic	Intergenic	-7232	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding
chipseq_peak_8538	chr3	25830361	25831676	+	0	NA	intron (NM_138666, intron 5 of 7)	intron (NM_138666, intron 5 of 7)	322289	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_21	chr1	9032821	9033359	+	0	NA	intron (NM_001290390, intron 2 of 20)	intron (NM_001290390, intron 2 of 20)	266787	NM_001290393	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
chipseq_peak_9295	chr3	140951811	140953635	+	0	NA	Intergenic	Intergenic	259632	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding
chipseq_peak_7912	chr2	76992609	76993737	+	0	NA	Intergenic	L1MC2|LINE|L1	-10626	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding
chipseq_peak_11547	chr6	60829208	60830094	+	0	NA	promoter-TSS (NM_001042451)	promoter-TSS (NM_001042451)	204	NM_009221	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding
chipseq_peak_12932	chr8	60773934	60774221	+	0	NA	Intergenic	Intergenic	-116374	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	2700029M09Rik	C230006B22Rik	RIKEN cDNA 2700029M09 gene	protein-coding
chipseq_peak_1104	chr1	177149921	177152182	+	0	NA	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	97716	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_7132	chr19	22015977	22016218	+	0	NA	Intergenic	Intergenic	-123020	NM_001035241	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding
chipseq_peak_2148	chr11	14350201	14351316	+	0	NA	Intergenic	Intergenic	-171717	NR_131011	75280	Mm.108492	NR_131011		4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA
chipseq_peak_2596	chr11	111377100	111377724	+	0	NA	Intergenic	Intergenic	311248	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
chipseq_peak_10774	chr5	88583214	88583676	+	0	NA	promoter-TSS (NM_027530)	promoter-TSS (NM_027530)	-68	NM_027530	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding
chipseq_peak_9077	chr3	110093989	110094333	+	0	NA	intron (NM_133488, intron 2 of 6)	intron (NM_133488, intron 2 of 6)	49311	NM_133488	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding
chipseq_peak_2579	chr11	110384708	110385116	+	0	NA	Intergenic	Intergenic	-14210	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
chipseq_peak_7801	chr2	62301389	62302053	+	0	NA	intron (NM_033552, intron 20 of 25)	intron (NM_033552, intron 20 of 25)	110510	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding
chipseq_peak_7448	chr2	9257870	9258964	+	0	NA	Intergenic	Intergenic	68902	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_11868	chr6	114976852	114977534	+	0	NA	Intergenic	Intergenic	-55441	NM_177683	232334	Mm.268357	NM_177683		Vgll4	BC048841|VGL-4	vestigial like 4 (Drosophila)	protein-coding
chipseq_peak_12297	chr7	89323545	89324121	+	0	NA	intron (NM_028343, intron 1 of 14)	intron (NM_028343, intron 1 of 14)	14954	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding
chipseq_peak_12241	chr7	76220277	76220619	+	0	NA	Intergenic	Intergenic	-9439	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_10454	chr5	45105302	45105738	+	0	NA	intron (NR_131933, intron 5 of 5)	intron (NR_131933, intron 5 of 5)	139319	NR_073013	75783	Mm.218472	NR_073013	ENSMUSG00000062496	4930431F12Rik	-	RIKEN cDNA 4930431F12 gene	ncRNA
chipseq_peak_8974	chr3	83429400	83429937	+	0	NA	Intergenic	Intergenic	144450	NR_036591	69460	Mm.389464	NR_036591	ENSMUSG00000101334	1700028M03Rik	-	RIKEN cDNA 1700028M03 gene	ncRNA
chipseq_peak_1542	chr10	49560119	49560462	+	0	NA	intron (NM_010349, intron 4 of 17)	intron (NM_010349, intron 4 of 17)	228464	NM_001111268	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding
chipseq_peak_8433	chr3	6105916	6106934	+	0	NA	Intergenic	Intergenic	514018	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding
chipseq_peak_10766	chr5	85636722	85637585	+	0	NA	Intergenic	Intergenic	428430	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_9592	chr4	22017980	22018362	+	0	NA	Intergenic	Intergenic	86845	NM_175234	76132	Mm.159689	NM_175234		Faxc	6230409E13Rik|AW742931	failed axon connections homolog (Drosophila)	protein-coding
chipseq_peak_136	chr1	26097983	26098345	+	0	NA	Intergenic	Intergenic	-268457	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
chipseq_peak_5140	chr15	53782284	53782884	+	0	NA	intron (NM_177225, intron 2 of 4)	L1MA8|LINE|L1	119852	NM_177225	320679	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding
chipseq_peak_10909	chr5	111864401	111864924	+	0	NA	Intergenic	Intergenic	-102934	NR_045832	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA
chipseq_peak_12754	chr8	38601062	38602325	+	0	NA	intron (NM_145841, intron 1 of 7)	URR1A|DNA|hAT-Charlie	59815	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding
chipseq_peak_12380	chr7	95253951	95256393	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-916072	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
chipseq_peak_1687	chr10	69756736	69757622	+	0	NA	intron (NM_170730, intron 1 of 17)	intron (NM_170730, intron 1 of 17)	-168353	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_6371	chr17	65562753	65563565	+	0	NA	Intergenic	Intergenic	-22377	NM_001289485	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding
chipseq_peak_11074	chr5	140225217	140225690	+	0	NA	intron (NM_010752, intron 10 of 17)	intron (NM_010752, intron 10 of 17)	96099	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding
chipseq_peak_11101	chr5	146567142	146568229	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	11549	NM_001243111	100041548	Mm.489581	NM_001243111	ENSMUSG00000041505	Gm3402	-	predicted gene 3402	protein-coding
chipseq_peak_3258	chr12	90786334	90786691	+	0	NA	Intergenic	Intergenic	-48074	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding
chipseq_peak_2936	chr12	49402622	49403211	+	0	NA	intron (NR_026733, intron 2 of 2)	L2c|LINE|L2	13264	NR_026733	67293	Mm.185800	NR_026733	ENSMUSG00000104861	3110039M20Rik	-	RIKEN cDNA 3110039M20 gene	ncRNA
chipseq_peak_8514	chr3	21356653	21357544	+	0	NA	Intergenic	Intergenic	-719554	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
chipseq_peak_12679	chr8	19707171	19707379	+	0	NA	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-22301	NM_001270553	100861668	Mm.491087	NM_001270553		Gm21119	-	predicted gene, 21119	protein-coding
chipseq_peak_7439	chr2	8497309	8500260	+	0	NA	Intergenic	Intergenic	-690731	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_3504	chr13	29014921	29016645	+	0	NA	promoter-TSS (NR_045075)	promoter-TSS (NR_045075)	-472	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
chipseq_peak_14059	chrX	106001484	106002237	+	0	NA	intron (NM_001190409, intron 1 of 9)	intron (NM_001190409, intron 1 of 9)	10039	NM_001190409	67075	Mm.275943	NM_025952	ENSMUSG00000031232	Magt1	2410001C15Rik|2610529C04Rik|2810482I07Rik|IAG2|IAP	magnesium transporter 1	protein-coding
chipseq_peak_6142	chr17	3328867	3329258	+	0	NA	intron (NM_001122998, intron 1 of 26)	L2c|LINE|L2	2489	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
chipseq_peak_5670	chr16	42102139	42103096	+	0	NA	intron (NM_175548, intron 3 of 5)	intron (NM_175548, intron 3 of 5)	200852	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
chipseq_peak_8916	chr3	79691895	79692541	+	0	NA	intron (NM_212452, intron 2 of 17)	intron (NM_212452, intron 2 of 17)	45576	NM_212452	381489	Mm.331086	NM_212452	ENSMUSG00000034009	Rxfp1	Gm1018|Lgr7	relaxin/insulin-like family peptide receptor 1	protein-coding
chipseq_peak_14024	chrX	68244954	68246122	+	0	NA	Intergenic	Intergenic	-235359	NR_030575	100124449		NR_030575	ENSMUSG00000106233	Mir509	Mirn509|mmu-mir-509	microRNA 509	ncRNA
chipseq_peak_5770	chr16	52789956	52790316	+	0	NA	Intergenic	Intergenic	25608	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA
chipseq_peak_9898	chr4	74411883	74413059	+	0	NA	Intergenic	Intergenic	160592	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding
chipseq_peak_8242	chr2	140230056	140230809	+	0	NA	intron (NM_001033296, intron 19 of 19)	intron (NM_001033296, intron 19 of 19)	59786	NM_027093	69487	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding
chipseq_peak_13309	chr9	11955121	11955397	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-1050484	NM_001170787	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding
chipseq_peak_3211	chr12	80365964	80366555	+	0	NA	intron (NM_177267, intron 6 of 8)	intron (NM_177267, intron 6 of 8)	25418	NR_037207	100526530		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA
chipseq_peak_4602	chr14	103629447	103630805	+	0	NA	Intergenic	Intergenic	-20117	NM_198014	105439	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding
chipseq_peak_10419	chr5	40177755	40180842	+	0	NA	Intergenic	Intergenic	-534667	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_104	chr1	23003624	23005338	+	0	NA	Intergenic	Intergenic	97772	NM_025746	66755	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding
chipseq_peak_7092	chr19	14776723	14777854	+	0	NA	Intergenic	Intergenic	-179105	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_13559	chr9	52145971	52146667	+	0	NA	intron (NM_001162921, intron 1 of 5)	intron (NM_001162921, intron 1 of 5)	21792	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding
chipseq_peak_7709	chr2	53030167	53030421	+	0	NA	intron (NM_172409, intron 2 of 26)	intron (NM_172409, intron 2 of 26)	160893	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP11|Fnbp11|Fnbp3	PRP40 pre-mRNA processing factor 40 homolog A (yeast)	protein-coding
chipseq_peak_2165	chr11	18413725	18414276	+	0	NA	Intergenic	Intergenic	318014	NR_131129	327872		NR_131129		Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA
chipseq_peak_9473	chr4	7228841	7229883	+	0	NA	Intergenic	Intergenic	-238639	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_10793	chr5	89952569	89952944	+	0	NA	Intergenic	Intergenic	-69422	NM_177872	330119	Mm.133062	NM_177872		Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding
chipseq_peak_2645	chr12	6151131	6151933	+	0	NA	Intergenic	Intergenic	775030	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA
chipseq_peak_7799	chr2	62285780	62286130	+	0	NA	intron (NM_033552, intron 15 of 25)	intron (NM_033552, intron 15 of 25)	126276	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding
chipseq_peak_2089	chr10	125693466	125693900	+	0	NA	Intergenic	UCON11|Unknown|Unknown	-272536	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
chipseq_peak_707	chr1	110559766	110560140	+	0	NA	Intergenic	L1_Mus3|LINE|L1	417419	NM_001081386	227485	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding
chipseq_peak_12805	chr8	45021917	45022809	+	0	NA	intron (NM_001081286, intron 8 of 25)	intron (NM_001081286, intron 8 of 25)	43055	NR_033588	434310	Mm.334512	NR_033588	ENSMUSG00000066158	AY512931	-	cDNA sequence AY512931	ncRNA
chipseq_peak_4428	chr14	76753185	76753645	+	0	NA	Intergenic	Intergenic	75847	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA
chipseq_peak_4350	chr14	64313413	64313906	+	0	NA	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	103297	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_3638	chr13	53941194	53941845	+	0	NA	Intergenic	Intergenic	113261	NM_001291801	13488	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding
chipseq_peak_6789	chr18	44931278	44931776	+	0	NA	Intergenic	Intergenic	102862	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding
chipseq_peak_4057	chr13	110392267	110392609	+	0	NA	Intergenic	Intergenic	-2606	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding
chipseq_peak_11698	chr6	98080600	98081464	+	0	NA	Intergenic	Intergenic	89249	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding
chipseq_peak_8107	chr2	114272631	114272881	+	0	NA	Intergenic	Intergenic	-71324	NM_175466	228491	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding
chipseq_peak_11783	chr6	104108330	104109093	+	0	NA	Intergenic	Intergenic	-384333	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_1045	chr1	170877630	170877986	+	0	NA	intron (NM_023173, intron 5 of 5)	intron (NM_023173, intron 5 of 5)	7732	NM_023173	80915	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding
chipseq_peak_4316	chr14	59114351	59114634	+	0	NA	Intergenic	Intergenic	28401	NM_026461	67932	Mm.65550	NM_026461	ENSMUSG00000021977	1700129C05Rik	-	RIKEN cDNA 1700129C05 gene	protein-coding
chipseq_peak_2347	chr11	49949725	49950113	+	0	NA	intron (NM_029004, intron 1 of 13)	intron (NM_029004, intron 1 of 13)	48084	NM_029004	74563	Mm.258798	NM_029004	ENSMUSG00000020374	Rasgef1c	9130006A14Rik	RasGEF domain family, member 1C	protein-coding
chipseq_peak_7482	chr2	15762320	15763409	+	0	NA	intron (NM_001310455, intron 18 of 38)	RMER16A3|LTR|ERVK	236385	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding
chipseq_peak_4515	chr14	88897961	88898393	+	0	NA	Intergenic	Intergenic	-426781	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_6253	chr17	44538868	44539507	+	0	NA	intron (NR_073425, intron 5 of 5)	intron (NR_073425, intron 5 of 5)	196989	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding
chipseq_peak_4191	chr14	21522826	21523334	+	0	NA	intron (NM_001205241, intron 2 of 16)	intron (NM_001205241, intron 2 of 16)	23295	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chipseq_peak_404	chr1	56949333	56950209	+	0	NA	intron (NM_139146, intron 2 of 10)	intron (NM_139146, intron 2 of 10)	21563	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding
chipseq_peak_4232	chr14	30383392	30383750	+	0	NA	intron (NM_028981, intron 1 of 46)	L1MEf|LINE|L1	-30085	NM_001083616	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding
chipseq_peak_1936	chr10	106632085	106633195	+	0	NA	intron (NM_001205341, intron 3 of 31)	intron (NM_001205341, intron 3 of 31)	-30160	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA
chipseq_peak_6420	chr17	73560323	73560645	+	0	NA	intron (NM_027864, intron 2 of 14)	intron (NM_027864, intron 2 of 14)	149967	NM_027864	71685	Mm.271953	NM_027864	ENSMUSG00000024064	Galnt14	0610033M06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
chipseq_peak_3969	chr13	101854796	101855512	+	0	NA	Intergenic	Intergenic	-86937	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding
chipseq_peak_3068	chr12	64712541	64714202	+	0	NA	Intergenic	Intergenic	-204540	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding
chipseq_peak_3629	chr13	52100145	52100482	+	0	NA	intron (NR_045061, intron 3 of 7)	intron (NR_045061, intron 3 of 7)	3572	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA
chipseq_peak_6513	chr17	89653621	89655848	+	0	NA	Intergenic	Intergenic	275493	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
chipseq_peak_9325	chr3	144329108	144329538	+	0	NA	Intergenic	Intergenic	-124068	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding
chipseq_peak_6136	chr16	97296790	97297504	+	0	NA	Intergenic	Intergenic	-59581	NM_019517	56175	Mm.97885	NM_019517	ENSMUSG00000040605	Bace2	1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding
chipseq_peak_10423	chr5	40392559	40393876	+	0	NA	Intergenic	Intergenic	-748586	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_13223	chr8	118190862	118191227	+	0	NA	Intergenic	Intergenic	-92567	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding
chipseq_peak_4424	chr14	76576880	76578508	+	0	NA	Intergenic	Intergenic	-20805	NR_027699	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding
chipseq_peak_5707	chr16	46673741	46675279	+	0	NA	Intergenic	Intergenic	-177543	NM_021496	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
chipseq_peak_4681	chr14	114413409	114414933	+	0	NA	Intergenic	Intergenic	-417794	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_11994	chr6	144461270	144461697	+	0	NA	Intergenic	Intergenic	-211385	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA
chipseq_peak_5720	chr16	47775661	47777083	+	0	NA	Intergenic	(TTTAG)n|Simple_repeat|Simple_repeat	-507363	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_13709	chr9	79653252	79653942	+	0	NA	intron (NM_001290308, intron 31 of 65)	intron (NM_001290308, intron 31 of 65)	65125	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding
chipseq_peak_2186	chr11	24106190	24107251	+	0	NA	intron (NM_016707, intron 2 of 4)	intron (NM_016707, intron 2 of 4)	26025	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding
chipseq_peak_512	chr1	72226173	72227010	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-14284	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding
chipseq_peak_9192	chr3	123516771	123517347	+	0	NA	Intergenic	Intergenic	-8723	NR_028574	69895	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA
chipseq_peak_7291	chr19	50546438	50547181	+	0	NA	intron (NM_001252501, intron 1 of 25)	intron (NM_001252501, intron 1 of 25)	131837	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_9853	chr4	66126269	66126621	+	0	NA	intron (NM_207109, intron 3 of 22)	intron (NM_207109, intron 3 of 22)	278038	NM_207109	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
chipseq_peak_414	chr1	57524562	57525116	+	0	NA	Intergenic	Intergenic	-118165	NM_001302962	68736	Mm.288490	NM_001037742		Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding
chipseq_peak_231	chr1	38484864	38485491	+	0	NA	intron (NM_001290814, intron 4 of 21)	intron (NM_001290814, intron 4 of 21)	142067	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding
chipseq_peak_8659	chr3	46034026	46034467	+	0	NA	Intergenic	Intergenic	413695	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding
chipseq_peak_12402	chr7	97473036	97473503	+	0	NA	Intergenic	Intergenic	-7687	NM_027256	101861	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding
chipseq_peak_579	chr1	83362332	83362662	+	0	NA	intron (NM_172430, intron 1 of 10)	intron (NM_172430, intron 1 of 10)	45703	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding
chipseq_peak_130	chr1	25644214	25645414	+	0	NA	intron (NM_175642, intron 2 of 30)	intron (NM_175642, intron 2 of 30)	184893	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
chipseq_peak_2970	chr12	50967931	50968355	+	0	NA	Intergenic	Intergenic	-37013	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
chipseq_peak_24	chr1	9207039	9207809	+	0	NA	intron (NM_001290390, intron 1 of 20)	intron (NM_001290390, intron 1 of 20)	92453	NM_001290393	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
chipseq_peak_7618	chr2	44095082	44095521	+	0	NA	intron (NM_001301832, intron 9 of 14)	intron (NM_001301832, intron 9 of 14)	-29977	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_11257	chr6	19099045	19099584	+	0	NA	Intergenic	Intergenic	179529	NR_126084	74725	Mm.387798	NR_126084	ENSMUSG00000107217	4930524B17Rik	-	RIKEN cDNA 4930524B17 gene	ncRNA
chipseq_peak_9817	chr4	54511531	54512489	+	0	NA	Intergenic	L1M5|LINE|L1	-435935	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding
chipseq_peak_10742	chr5	83778481	83779377	+	0	NA	Intergenic	Intergenic	-423734	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding
chipseq_peak_13196	chr8	112728575	112729630	+	0	NA	intron (NM_130457, intron 3 of 23)	intron (NM_130457, intron 3 of 23)	159059	NM_130457	170571	Mm.209232	NM_130457	ENSMUSG00000031772	Cntnap4	Caspr4|E130114F09Rik	contactin associated protein-like 4	protein-coding
chipseq_peak_2036	chr10	119013735	119014332	+	0	NA	Intergenic	Intergenic	-78872	NR_045348	73400	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA
chipseq_peak_12104	chr7	51748505	51749528	+	0	NA	Intergenic	Intergenic	113251	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding
chipseq_peak_1837	chr10	97582554	97583086	+	0	NA	Intergenic	Intergenic	14111	NR_045356	75025	Mm.159401	NR_045356		4930473O22Rik	-	RIKEN cDNA 4930473O22 gene	ncRNA
chipseq_peak_4519	chr14	89026136	89026769	+	0	NA	Intergenic	Intergenic	-555056	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_1655	chr10	67921594	67921997	+	0	NA	Intergenic	Lx8|LINE|L1	-9133	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding
chipseq_peak_8149	chr2	123927869	123928689	+	0	NA	Intergenic	L1MD1|LINE|L1	-161690	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
chipseq_peak_10819	chr5	97625082	97625587	+	0	NA	Intergenic	Intergenic	-168326	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding
chipseq_peak_161	chr1	30632675	30634031	+	0	NA	Intergenic	Intergenic	229903	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
chipseq_peak_772	chr1	126804521	126805375	+	0	NA	intron (NM_176957, intron 1 of 12)	intron (NM_176957, intron 1 of 12)	25684	NM_176957	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding
chipseq_peak_13489	chr9	42130991	42131954	+	0	NA	Intergenic	Intergenic	-7183	NM_011436	20660	Mm.121920	NM_011436		Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding
chipseq_peak_7456	chr2	11727203	11727900	+	0	NA	intron (NR_073191, intron 4 of 5)	intron (NR_073191, intron 4 of 5)	21839	NM_001271501	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding
chipseq_peak_7891	chr2	73778460	73780064	+	0	NA	Intergenic	Intergenic	-3916	NM_001113246	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding
chipseq_peak_7002	chr18	72198497	72198895	+	0	NA	intron (NM_007831, intron 1 of 28)	MER58B|DNA|hAT-Charlie	152373	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
chipseq_peak_3980	chr13	103805694	103806731	+	0	NA	Intergenic	Intergenic	-41630	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding
chipseq_peak_500	chr1	71404127	71404658	+	0	NA	intron (NM_175210, intron 1 of 52)	intron (NM_175210, intron 1 of 52)	10518	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
chipseq_peak_461	chr1	66315079	66316269	+	0	NA	intron (NM_008632, intron 3 of 13)	L1ME2z|LINE|L1	-6050	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding
chipseq_peak_12312	chr7	90825567	90826103	+	0	NA	Intergenic	L1M3|LINE|L1	-264951	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_10566	chr5	62510904	62512509	+	0	NA	Intergenic	Intergenic	254471	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
chipseq_peak_8725	chr3	53890570	53891643	+	0	NA	Intergenic	Intergenic	-27299	NM_026435	67890	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|ENSMUSG00000074598|Gm10726	ubiquitin-fold modifier 1	protein-coding
chipseq_peak_2966	chr12	50733610	50734544	+	0	NA	Intergenic	Intergenic	-84854	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_8506	chr3	20779045	20779460	+	0	NA	Intergenic	Intergenic	-412075	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
chipseq_peak_6676	chr18	25984194	25984674	+	0	NA	Intergenic	Intergenic	-230451	NM_001146294	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
chipseq_peak_7645	chr2	44705786	44706559	+	0	NA	intron (NM_172662, intron 5 of 10)	intron (NM_172662, intron 5 of 10)	155450	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_4956	chr15	30595626	30596315	+	0	NA	intron (NM_008729, intron 3 of 22)	MIR|SINE|MIR	423377	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding
chipseq_peak_784	chr1	128636870	128637174	+	0	NA	Intergenic	HAL1|LINE|L1	-44723	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding
chipseq_peak_3562	chr13	42894163	42894988	+	0	NA	intron (NM_001302636, intron 1 of 12)	intron (NM_001302636, intron 1 of 12)	28328	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_2328	chr11	43059308	43059950	+	0	NA	Intergenic	Intergenic	-90248	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding
chipseq_peak_9819	chr4	55058350	55059095	+	0	NA	intron (NM_172867, intron 9 of 12)	intron (NM_172867, intron 9 of 12)	110777	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding
chipseq_peak_10864	chr5	103853996	103854364	+	0	NA	3' UTR (NM_133919, exon 20 of 20)	3' UTR (NM_133919, exon 20 of 20)	57049	NM_178741	246293	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding
chipseq_peak_3023	chr12	58425301	58427347	+	0	NA	Intergenic	Intergenic	-157066	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
chipseq_peak_3563	chr13	42898472	42898786	+	0	NA	intron (NM_001302636, intron 1 of 12)	intron (NM_001302636, intron 1 of 12)	32382	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_795	chr1	131115960	131117390	+	0	NA	Intergenic	Intergenic	-18832	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding
chipseq_peak_6123	chr16	95340990	95341683	+	0	NA	Intergenic	Intergenic	83778	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding
chipseq_peak_9357	chr3	149342479	149343080	+	0	NA	Intergenic	Intergenic	68042	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_13506	chr9	45470920	45471407	+	0	NA	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-39931	NR_040732	74602	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA
chipseq_peak_10397	chr5	36304707	36305013	+	0	NA	intron (NM_030889, intron 1 of 26)	intron (NM_030889, intron 1 of 26)	3290	NR_106162	102465792		NR_106162	ENSMUSG00000098884	Mir7689	Gm27434|mmu-mir-7689	microRNA 7689	ncRNA
chipseq_peak_13363	chr9	25374044	25374626	+	0	NA	Intergenic	Intergenic	-107262	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chipseq_peak_11222	chr6	15140643	15140958	+	0	NA	intron (NM_053242, intron 3 of 18)	intron (NM_053242, intron 3 of 18)	-44706	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding
chipseq_peak_3796	chr13	83354762	83355973	+	0	NA	Intergenic	Intergenic	-148667	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_3533	chr13	36282073	36283007	+	0	NA	intron (NM_024274, intron 4 of 6)	intron (NM_024274, intron 4 of 6)	164897	NM_024274	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding
chipseq_peak_10834	chr5	99084170	99084733	+	0	NA	Intergenic	Intergenic	-47372	NM_008926	19092	Mm.263002	NM_008926	ENSMUSG00000029334	Prkg2	AW212535|CGKII|Prkgr2|cGK-II	protein kinase, cGMP-dependent, type II	protein-coding
chipseq_peak_5207	chr15	62780024	62781325	+	0	NA	Intergenic	Intergenic	-561223	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_1284	chr10	14179312	14180517	+	0	NA	Intergenic	Intergenic	213535	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chipseq_peak_11601	chr6	76925634	76926032	+	0	NA	intron (NM_145732, intron 16 of 18)	L1MB3|LINE|L1	-316884	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_10087	chr4	103461150	103461871	+	0	NA	intron (NR_040673, intron 3 of 3)	L1MD|LINE|L1	79010	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA
chipseq_peak_7499	chr2	20678697	20679029	+	0	NA	intron (NM_178059, intron 4 of 18)	AT_rich|Low_complexity|Low_complexity	159350	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
chipseq_peak_5718	chr16	47709092	47709694	+	0	NA	Intergenic	L1MA7|LINE|L1	-574342	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_13250	chr8	125985148	125985689	+	0	NA	Intergenic	Intergenic	-9684	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding
chipseq_peak_2304	chr11	41491270	41492326	+	0	NA	Intergenic	Intergenic	508916	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding
chipseq_peak_7970	chr2	85425838	85426464	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	4676	NM_146433	258425	Mm.271354	NM_146433	ENSMUSG00000075219	Olfr994	MOR203-4	olfactory receptor 994	protein-coding
chipseq_peak_916	chr1	149190315	149190662	+	0	NA	Intergenic	Lx5c|LINE|L1	731951	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
chipseq_peak_11609	chr6	77479480	77480029	+	0	NA	intron (NM_145732, intron 8 of 18)	intron (NM_145732, intron 8 of 18)	-97279	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA
chipseq_peak_13689	chr9	76705667	76706130	+	0	NA	Intergenic	Intergenic	-160094	NM_001045518	208994	Mm.256929	NM_001045518	ENSMUSG00000032358	Fam83b	C530008M07Rik|Gm516	family with sequence similarity 83, member B	protein-coding
chipseq_peak_2905	chr12	43641109	43642214	+	0	NA	Intergenic	Intergenic	568407	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
chipseq_peak_9603	chr4	23742090	23742656	+	0	NA	Intergenic	Intergenic	-754089	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_5569	chr16	27925216	27927005	+	0	NA	TTS (NR_033475)	TTS (NR_033475)	76180	NR_033475	100038623	Mm.387135	NR_033475		Gm10823	ENSMUSG00000075290	predicted gene 10823	ncRNA
chipseq_peak_692	chr1	106690628	106691305	+	0	NA	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	23324	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding
chipseq_peak_7487	chr2	17423012	17424331	+	0	NA	intron (NM_028757, intron 4 of 6)	intron (NM_028757, intron 4 of 6)	-139843	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA
chipseq_peak_4813	chr15	13304469	13304986	+	0	NA	Intergenic	Intergenic	-131052	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_1111	chr1	177377803	177378421	+	0	NA	Intergenic	Intergenic	-66549	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_7728	chr2	55479355	55480711	+	0	NA	intron (NM_008426, intron 3 of 3)	intron (NM_008426, intron 3 of 3)	44063	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
chipseq_peak_11839	chr6	110560635	110560971	+	0	NA	Intergenic	Intergenic	-84795	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_1286	chr10	14199023	14199820	+	0	NA	Intergenic	Intergenic	233042	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chipseq_peak_11866	chr6	114814415	114814794	+	0	NA	intron (NM_028835, intron 18 of 18)	intron (NM_028835, intron 18 of 18)	107148	NM_177683	232334	Mm.268357	NM_177683		Vgll4	BC048841|VGL-4	vestigial like 4 (Drosophila)	protein-coding
chipseq_peak_13575	chr9	54244777	54245570	+	0	NA	Intergenic	Intergenic	-41313	NM_177350	235379	Mm.123549	NM_177350	ENSMUSG00000046167	Gldn	CRG-L2|Clom|Colm|Crgl2|Crlg2	gliomedin	protein-coding
chipseq_peak_6261	chr17	45081802	45082214	+	0	NA	intron (NM_178652, intron 11 of 11)	intron (NM_178652, intron 11 of 11)	-201123	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding
chipseq_peak_8973	chr3	82857270	82857919	+	0	NA	intron (NM_001277170, intron 4 of 5)	intron (NM_001277170, intron 4 of 5)	18889	NM_001277170	633285	Mm.265114	NM_001146328		Rbm46	EG633285|ENSMUSG00000033882|Gm761	RNA binding motif protein 46	protein-coding
chipseq_peak_10895	chr5	111058511	111059057	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	54640	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_12647	chr8	15237382	15237884	+	0	NA	Intergenic	Intergenic	179980	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding
chipseq_peak_1467	chr10	38482085	38482827	+	0	NA	Intergenic	Lx8|LINE|L1	306682	NR_131035	75877	Mm.402094	NR_131035		4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA
chipseq_peak_12124	chr7	54633226	54634864	+	0	NA	Intergenic	Intergenic	-201200	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_5586	chr16	30825670	30826906	+	0	NA	Intergenic	RSINE1|SINE|B4	226565	NM_177632	224093	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding
chipseq_peak_11981	chr6	143843294	143843896	+	0	NA	intron (NM_001113559, intron 11 of 13)	intron (NM_001113559, intron 11 of 13)	-192307	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA
chipseq_peak_7884	chr2	71898483	71898797	+	0	NA	intron (NM_172665, intron 10 of 10)	intron (NM_172665, intron 10 of 10)	25416	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding
chipseq_peak_13182	chr8	109464018	109465138	+	0	NA	Intergenic	Intergenic	-29449	NM_019938	56523	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding
chipseq_peak_11415	chr6	41556010	41557061	+	0	NA	Intergenic	Intergenic	34759	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding
chipseq_peak_7117	chr19	20123135	20124117	+	0	NA	Intergenic	Intergenic	267045	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding
chipseq_peak_5614	chr16	37529202	37529643	+	0	NA	intron (NM_028812, intron 2 of 4)	intron (NM_028812, intron 2 of 4)	10347	NM_028812	74197	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding
chipseq_peak_9144	chr3	118307809	118308737	+	0	NA	Intergenic	Intergenic	-125584	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA
chipseq_peak_10258	chr5	6870618	6871963	+	0	NA	intron (NM_001163223, intron 2 of 3)	intron (NM_001163223, intron 2 of 3)	-432874	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding
chipseq_peak_3159	chr12	74193481	74193968	+	0	NA	intron (NM_172804, intron 2 of 6)	L1MB8|LINE|L1	-90552	NR_030735	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA
chipseq_peak_6751	chr18	38838762	38839139	+	0	NA	3' UTR (NM_010197, exon 4 of 4)	3' UTR (NM_010197, exon 4 of 4)	-53506	NM_001033789	545253	Mm.244585	NM_001033789		Gm5820	EG545253	predicted gene 5820	protein-coding
chipseq_peak_10565	chr5	62498345	62500851	+	0	NA	Intergenic	Intergenic	266579	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
chipseq_peak_10433	chr5	41941824	41942524	+	0	NA	Intergenic	Intergenic	50832	NR_105842	102465225		NR_105842	ENSMUSG00000098264	Mir6414	Gm27518|mmu-mir-6414	microRNA 6414	ncRNA
chipseq_peak_10368	chr5	24018559	24020638	+	0	NA	intron (NR_037304, intron 1 of 4)	intron (NR_037304, intron 1 of 4)	10714	NM_001310471	84652	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding
chipseq_peak_2944	chr12	49808341	49808784	+	0	NA	Intergenic	Intergenic	-327700	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_8608	chr3	38085134	38085481	+	0	NA	Intergenic	Intergenic	122812	NR_040541	71342	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA
chipseq_peak_7927	chr2	78600552	78601249	+	0	NA	Intergenic	Intergenic	-268147	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chipseq_peak_7121	chr19	20344238	20345754	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	45675	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding
chipseq_peak_8365	chr2	162282110	162283057	+	0	NA	intron (NM_001291150, intron 2 of 30)	MIR3|SINE|MIR	-108230	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA
chipseq_peak_1575	chr10	53611984	53612780	+	0	NA	intron (NM_027830, intron 7 of 13)	intron (NM_027830, intron 7 of 13)	15421	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding
chipseq_peak_8778	chr3	57667137	57667798	+	0	NA	TTS (NM_001033349)	TTS (NM_001033349)	-15783	NM_175095	52245	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding
chipseq_peak_7015	chr18	78185029	78185671	+	0	NA	intron (NM_207651, intron 9 of 21)	intron (NM_207651, intron 9 of 21)	-6178	NM_001110273	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
chipseq_peak_10199	chr4	135240518	135240858	+	0	NA	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	32072	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding
chipseq_peak_265	chr1	41604103	41606424	+	0	NA	Intergenic	Intergenic	-424011	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_2872	chr12	38789831	38790188	+	0	NA	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	6298	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
chipseq_peak_365	chr1	55956179	55958433	+	0	NA	intron (NR_045837, intron 3 of 5)	intron (NR_045837, intron 3 of 5)	26065	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
chipseq_peak_801	chr1	131657701	131658418	+	0	NA	intron (NM_007799, intron 1 of 9)	B1_Mur1|SINE|Alu	19745	NM_007799	13034	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding
chipseq_peak_13178	chr8	109317462	109317846	+	0	NA	Intergenic	Intergenic	23254	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo
chipseq_peak_1572	chr10	53429647	53430215	+	0	NA	Intergenic	Intergenic	-50080	NM_001204983	100038725	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	ENSMUSG00000038594|Gm9766	centrosomal protein 85-like	protein-coding
chipseq_peak_5435	chr15	96542849	96543571	+	0	NA	Intergenic	Intergenic	-82367	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding
chipseq_peak_8432	chr3	6018723	6019256	+	0	NA	Intergenic	Intergenic	-442741	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding
chipseq_peak_4764	chr14	124319737	124320353	+	0	NA	intron (NM_207667, intron 1 of 4)	RLTR17D_Mm|LTR|ERVK	-127499	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding
chipseq_peak_871	chr1	141842271	141844342	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1186904	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_4754	chr14	123246059	123246599	+	0	NA	Intergenic	Intergenic	77143	NR_045143	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
chipseq_peak_6808	chr18	49117528	49118737	+	0	NA	Intergenic	Intergenic	-405157	NR_033785	67321	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA
chipseq_peak_12134	chr7	55189419	55190021	+	0	NA	intron (NM_178705, intron 7 of 11)	intron (NM_178705, intron 7 of 11)	354475	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_10667	chr5	73637704	73638092	+	0	NA	intron (NM_011890, intron 5 of 5)	intron (NM_011890, intron 5 of 5)	-5477	NM_153568	231296	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding
chipseq_peak_11670	chr6	95185063	95185553	+	0	NA	Intergenic	Intergenic	67428	NM_001008785	243574	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding
chipseq_peak_1590	chr10	56058711	56059460	+	0	NA	intron (NM_001033385, intron 27 of 32)	intron (NM_001033385, intron 27 of 32)	-47832	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding
chipseq_peak_4431	chr14	76804749	76805126	+	0	NA	Intergenic	Intergenic	127369	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA
chipseq_peak_11929	chr6	137178915	137180279	+	0	NA	Intergenic	Intergenic	-9101	NM_181988	232441	Mm.46233	NM_181988	ENSMUSG00000030222	Rerg	-	RAS-like, estrogen-regulated, growth-inhibitor	protein-coding
chipseq_peak_1983	chr10	110570299	110570825	+	0	NA	Intergenic	Intergenic	-30088	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
chipseq_peak_4341	chr14	62828133	62828490	+	0	NA	intron (NR_045503, intron 4 of 6)	intron (NR_045503, intron 4 of 6)	-9379	NM_175546	268752	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
chipseq_peak_7423	chr2	8049356	8049734	+	0	NA	Intergenic	Intergenic	-653347	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_4038	chr13	109558220	109558861	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	233796	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_1350	chr10	24999727	25000337	+	0	NA	Intergenic	Intergenic	-72562	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding
chipseq_peak_12699	chr8	28870988	28872919	+	0	NA	intron (NM_153135, intron 3 of 17)	intron (NM_153135, intron 3 of 17)	347683	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_11951	chr6	139180877	139182669	+	0	NA	Intergenic	Intergenic	140803	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA
chipseq_peak_6715	chr18	30963915	30964786	+	0	NA	Intergenic	MER70A|LTR|ERVL	352778	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_10997	chr5	127996569	127997196	+	0	NA	intron (NM_172885, intron 3 of 8)	intron (NM_172885, intron 3 of 8)	364620	NM_177005	319804	Mm.237888	NM_177005		Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding
chipseq_peak_4185	chr14	21310584	21310929	+	0	NA	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	-189014	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chipseq_peak_8835	chr3	68128989	68129936	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	64660	NM_001113421	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_7619	chr2	44131229	44131664	+	0	NA	intron (NM_001301832, intron 10 of 14)	L2|LINE|L2	-66122	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_4730	chr14	119492073	119492640	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	-256871	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA
chipseq_peak_13381	chr9	27518120	27518610	+	0	NA	Intergenic	Intergenic	121153	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding
chipseq_peak_9887	chr4	72384837	72385935	+	0	NA	Intergenic	Intergenic	184142	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA
chipseq_peak_2667	chr12	7464846	7465992	+	0	NA	Intergenic	Intergenic	-85089	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_7475	chr2	14846601	14847748	+	0	NA	intron (NM_001252533, intron 1 of 12)	intron (NM_001252533, intron 1 of 12)	23082	NM_001252533	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding
chipseq_peak_923	chr1	150783249	150784087	+	0	NA	intron (NM_001024720, intron 11 of 106)	intron (NM_001024720, intron 11 of 106)	209767	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|Gm201	hemicentin 1	protein-coding
chipseq_peak_907	chr1	147309193	147310232	+	0	NA	Intergenic	Intergenic	812025	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_2525	chr11	100604260	100604606	+	0	NA	intron (NM_019795, intron 1 of 13)	intron (NM_019795, intron 1 of 13)	15735	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ (Hsp40) homolog, subfamily C, member 7	protein-coding
chipseq_peak_2313	chr11	42050916	42051956	+	0	NA	Intergenic	Intergenic	-50722	NM_008073	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding
chipseq_peak_5157	chr15	56197752	56198356	+	0	NA	Intergenic	L2c|LINE|L2	-291105	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding
chipseq_peak_8772	chr3	56835667	56837511	+	0	NA	Intergenic	L1MA5|LINE|L1	465330	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding
chipseq_peak_6401	chr17	69768322	69770494	+	0	NA	Intergenic	Intergenic	330082	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
chipseq_peak_4600	chr14	103537303	103537656	+	0	NA	intron (NM_022886, intron 5 of 30)	intron (NM_022886, intron 5 of 30)	24138	NM_022886	64929	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding
chipseq_peak_8444	chr3	9215426	9216330	+	0	NA	Intergenic	Intergenic	-34689	NM_177660	229055	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding
chipseq_peak_1723	chr10	74895681	74896090	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-71346	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding
chipseq_peak_6817	chr18	51218200	51218922	+	0	NA	intron (NM_001081224, intron 1 of 1)	intron (NM_001081224, intron 1 of 1)	100663	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding
chipseq_peak_7601	chr2	43771155	43771992	+	0	NA	intron (NM_001301832, intron 1 of 14)	intron (NM_001301832, intron 1 of 14)	22749	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_1964	chr10	109739682	109739987	+	0	NA	intron (NM_001081035, intron 22 of 38)	intron (NM_001081035, intron 22 of 38)	260385	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding
chipseq_peak_7003	chr18	72687624	72688777	+	0	NA	Intergenic	Intergenic	-337131	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
chipseq_peak_6601	chr18	16037420	16038143	+	0	NA	Intergenic	Intergenic	-319735	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
chipseq_peak_13131	chr8	100188004	100188915	+	0	NA	Intergenic	Intergenic	771785	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_11624	chr6	80622328	80623529	+	0	NA	intron (NM_001134743, intron 2 of 2)	intron (NM_001134743, intron 2 of 2)	603285	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding
chipseq_peak_3604	chr13	46387152	46387741	+	0	NA	Intergenic	Intergenic	-30854	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding
chipseq_peak_6297	chr17	52078514	52078932	+	0	NA	Intergenic	Intergenic	195996	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA
chipseq_peak_8774	chr3	56962591	56963740	+	0	NA	Intergenic	Intergenic	338754	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding
chipseq_peak_11710	chr6	98259055	98259688	+	0	NA	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	83383	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_4073	chr13	112134675	112135085	+	0	NA	Intergenic	Intergenic	-153571	NM_029898	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding
chipseq_peak_6917	chr18	64777637	64778189	+	0	NA	Intergenic	Intergenic	-109843	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding
chipseq_peak_10060	chr4	97282491	97283514	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-298941	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
chipseq_peak_7324	chr19	57580835	57581199	+	0	NA	Intergenic	Intergenic	-30017	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding
chipseq_peak_1906	chr10	104679510	104680051	+	0	NA	Intergenic	Intergenic	392511	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA
chipseq_peak_8277	chr2	142253590	142254886	+	0	NA	intron (NM_001013802, intron 11 of 18)	intron (NM_001013802, intron 11 of 18)	647226	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_4900	chr15	22914471	22914932	+	0	NA	Intergenic	Intergenic	-121762	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_7935	chr2	79010428	79010656	+	0	NA	Intergenic	Intergenic	141495	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chipseq_peak_12546	chr7	133066847	133067671	+	0	NA	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-52012	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding
chipseq_peak_10892	chr5	111038662	111039240	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	34807	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_10934	chr5	115489424	115491400	+	0	NA	Intergenic	Intergenic	-5928	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding
chipseq_peak_10858	chr5	103050539	103050818	+	0	NA	intron (NM_001310685, intron 1 of 11)	intron (NM_001310685, intron 1 of 11)	7632	NM_001310686	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
chipseq_peak_741	chr1	121785615	121786496	+	0	NA	Intergenic	Intergenic	-218075	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
chipseq_peak_12313	chr7	90840792	90842224	+	0	NA	Intergenic	Intergenic	-249278	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_4460	chr14	80236781	80238172	+	0	NA	Intergenic	MLT1B-int|LTR|ERVL-MaLR	237174	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_5056	chr15	44679072	44679474	+	0	NA	intron (NM_001285841, intron 1 of 3)	intron (NM_001285841, intron 1 of 3)	27215	NM_001285843	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_9410	chr3	155340329	155340986	+	0	NA	Intergenic	Intergenic	247223	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding
chipseq_peak_3608	chr13	46570876	46573207	+	0	NA	intron (NM_026056, intron 4 of 12)	intron (NM_026056, intron 4 of 12)	70138	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding
chipseq_peak_4489	chr14	85621032	85621338	+	0	NA	Intergenic	Intergenic	-624785	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
chipseq_peak_6717	chr18	31151857	31153265	+	0	NA	intron (NM_009065, intron 4 of 4)	intron (NM_009065, intron 4 of 4)	164567	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_10161	chr4	124546470	124546906	+	0	NA	Intergenic	Intergenic	-22491	NR_045819	108809	Mm.250313	NR_045819		4933407E24Rik	-	RIKEN cDNA 4933407E24 gene	ncRNA
chipseq_peak_1094	chr1	177050989	177052893	+	0	NA	intron (NM_011785, intron 9 of 12)	intron (NM_011785, intron 9 of 12)	196826	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_11569	chr6	64398439	64399219	+	0	NA	intron (NM_008167, intron 12 of 15)	intron (NM_008167, intron 12 of 15)	-330317	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
chipseq_peak_5183	chr15	60096179	60097145	+	0	NA	Intergenic	Intergenic	-80044	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding
chipseq_peak_4511	chr14	88598234	88599427	+	0	NA	Intergenic	Intergenic	-127434	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_623	chr1	95341976	95344337	+	0	NA	Intergenic	Intergenic	29528	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding
chipseq_peak_7948	chr2	80603239	80604512	+	0	NA	Intergenic	Intergenic	-13339	NM_024438	68082	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding
chipseq_peak_10633	chr5	70995290	70996285	+	0	NA	intron (NM_008066, intron 8 of 9)	intron (NM_008066, intron 8 of 9)	100062	NM_008066	14395	Mm.5304	NM_008066		Gabra2	C630048P16Rik|Gabra-2	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2	protein-coding
chipseq_peak_6431	chr17	75519143	75519550	+	0	NA	intron (NM_207246, intron 14 of 17)	intron (NM_207246, intron 14 of 17)	32600	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding
chipseq_peak_12889	chr8	55039764	55040423	+	0	NA	intron (NM_001253754, intron 2 of 6)	intron (NM_001253754, intron 2 of 6)	85365	NM_153581	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_6719	chr18	31183617	31184519	+	0	NA	intron (NM_009065, intron 3 of 4)	intron (NM_009065, intron 3 of 4)	133060	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_7596	chr2	43689528	43691931	+	0	NA	Intergenic	Intergenic	-58095	NM_153820	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_10014	chr4	87500280	87500890	+	0	NA	Intergenic	Intergenic	-270045	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
chipseq_peak_201	chr1	33663246	33663629	+	0	NA	intron (NM_008922, intron 4 of 13)	intron (NM_008922, intron 4 of 13)	6357	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding
chipseq_peak_4388	chr14	68820163	68820605	+	0	NA	Intergenic	Intergenic	-164542	NR_102399	13522	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding
chipseq_peak_10009	chr4	87041216	87041922	+	0	NA	intron (NM_001110240, intron 4 of 9)	intron (NM_001110240, intron 4 of 9)	167155	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding
chipseq_peak_10710	chr5	80913092	80914427	+	0	NA	Intergenic	Intergenic	-107834	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_894	chr1	144425378	144426310	+	0	NA	Intergenic	Intergenic	141823	NM_001290269	624910	Mm.389199	NM_001290269		Rgs21	EG624910	regulator of G-protein signalling 21	protein-coding
chipseq_peak_13715	chr9	83314092	83314521	+	0	NA	Intergenic	Intergenic	-117241	NR_102437	100039186	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA
chipseq_peak_2251	chr11	36653590	36654215	+	0	NA	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	290339	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
chipseq_peak_2595	chr11	111100097	111100887	+	0	NA	Intergenic	Intergenic	34328	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
chipseq_peak_9455	chr4	6096714	6097216	+	0	NA	Intergenic	Intergenic	-94140	NM_026534	68053	Mm.404043	NM_026534		Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding
chipseq_peak_11082	chr5	142215972	142216479	+	0	NA	Intergenic	Intergenic	-185272	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding
chipseq_peak_736	chr1	120652087	120652586	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	49849	NM_010133	13798	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1	engrailed 1	protein-coding
chipseq_peak_12715	chr8	31033114	31033567	+	0	NA	Intergenic	Intergenic	-56322	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding
chipseq_peak_103	chr1	22962122	22962629	+	0	NA	Intergenic	L1_Rod|LINE|L1	139878	NM_025746	66755	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding
chipseq_peak_3347	chr12	110166947	110167186	+	0	NA	Intergenic	Intergenic	-8993	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA
chipseq_peak_6692	chr18	29501450	29503128	+	0	NA	Intergenic	Intergenic	-5873	NR_045391	78058	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA
chipseq_peak_5132	chr15	52764187	52765262	+	0	NA	Intergenic	HAL1|LINE|L1	52279	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
chipseq_peak_7862	chr2	67499084	67500166	+	0	NA	intron (NM_001024618, intron 3 of 8)	intron (NM_001024618, intron 3 of 8)	53623	NM_001024618	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding
chipseq_peak_9629	chr4	25179713	25180136	+	0	NA	Intergenic	Intergenic	62952	NM_021318	57756	Mm.87325	NM_021318	ENSMUSG00000028259	Fhl5	1700027G07Rik|Act	four and a half LIM domains 5	protein-coding
chipseq_peak_5933	chr16	72509925	72511657	+	0	NA	Intergenic	Intergenic	-152358	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_8288	chr2	142647678	142648722	+	0	NA	intron (NM_001081133, intron 25 of 25)	intron (NM_001081133, intron 25 of 25)	253264	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_8742	chr3	54962382	54963101	+	0	NA	Intergenic	L3|LINE|CR1	-46854	NM_177854	329641	Mm.51187	NM_177854	ENSMUSG00000056306	Sertm1	6030405A18Rik	serine rich and transmembrane domain containing 1	protein-coding
chipseq_peak_3855	chr13	89463652	89464095	+	0	NA	Intergenic	Intergenic	-76763	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding
chipseq_peak_14138	chrX	166343865	166345405	+	0	NA	promoter-TSS (NM_001177960)	promoter-TSS (NM_001177960)	82	NM_001177955	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding
chipseq_peak_780	chr1	128031094	128032515	+	0	NA	intron (NM_001285945, intron 6 of 20)	intron (NM_001285945, intron 6 of 20)	70667	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding
chipseq_peak_2714	chr12	14315871	14316765	+	0	NA	Intergenic	MIR|SINE|MIR	54784	NR_045003	791361	Mm.217963	NR_045003		Gm16497	ENSMUSG00000066623	predicted gene 16497	ncRNA
chipseq_peak_522	chr1	73452635	73452889	+	0	NA	Intergenic	Intergenic	-45193	NR_003202	723792	Mm.385493	NR_003202		Pinc	-	pregnancy induced noncoding RNA	ncRNA
chipseq_peak_11433	chr6	43521359	43522441	+	0	NA	intron (NM_001311111, intron 5 of 7)	intron (NM_001311111, intron 5 of 7)	79471	NR_045988	319812	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA
chipseq_peak_8626	chr3	39966368	39966643	+	0	NA	Intergenic	L1MCc|LINE|L1	556407	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_1064	chr1	175174864	175175406	+	0	NA	intron (NM_001199003, intron 4 of 17)	intron (NM_001199003, intron 4 of 17)	-253316	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	protein-coding
chipseq_peak_6344	chr17	62579521	62580462	+	0	NA	Intergenic	Intergenic	301326	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_10847	chr5	102287200	102287544	+	0	NA	Intergenic	Intergenic	-194019	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
chipseq_peak_2221	chr11	26802260	26802975	+	0	NA	Intergenic	Intergenic	17509	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_2136	chr11	12520416	12521778	+	0	NA	Intergenic	Intergenic	-56137	NM_001282993	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
chipseq_peak_12299	chr7	89433134	89433544	+	0	NA	Intergenic	Intergenic	7033	NR_102276	101521	Mm.26902	NR_102276		AI314278	-	expressed sequence AI314278	ncRNA
chipseq_peak_13209	chr8	113854777	113855266	+	0	NA	Intergenic	Intergenic	-6182	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding
chipseq_peak_3236	chr12	83631837	83632201	+	0	NA	promoter-TSS (NM_027349)	promoter-TSS (NM_027349)	-215	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding
chipseq_peak_7626	chr2	44310194	44310564	+	0	NA	intron (NM_001301832, intron 13 of 14)	intron (NM_001301832, intron 13 of 14)	-245055	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_8101	chr2	113768603	113769460	+	0	NA	Intergenic	Intergenic	-10383	NM_011824	23892	Mm.166318	NM_011824		Grem1	Cktsf1b1|Drm|Grem|ld	gremlin 1	protein-coding
chipseq_peak_12917	chr8	58691502	58692480	+	0	NA	intron (NM_175032, intron 1 of 11)	intron (NM_175032, intron 1 of 11)	8805	NM_001177534	100271928	Mm.484123	NM_001177534		Gm15881	OTTMUSG00000027193	predicted gene 15881	protein-coding
chipseq_peak_11723	chr6	99340052	99340905	+	0	NA	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	-73963	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
chipseq_peak_3573	chr13	44043050	44045354	+	0	NA	Intergenic	Intergenic	-76965	NR_045285	328235	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA
chipseq_peak_6470	chr17	82781462	82782210	+	0	NA	Intergenic	Intergenic	296389	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
chipseq_peak_9877	chr4	71130737	71131292	+	0	NA	Intergenic	Intergenic	-596086	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
chipseq_peak_7851	chr2	66190261	66190475	+	0	NA	intron (NM_001290669, intron 26 of 27)	L1MC5|LINE|L1	-65575	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
chipseq_peak_88	chr1	21684002	21685017	+	0	NA	intron (NM_001310477, intron 1 of 12)	intron (NM_001310477, intron 1 of 12)	277433	NM_023872	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding
chipseq_peak_11116	chr5	149391986	149392399	+	0	NA	Intergenic	Intergenic	-19614	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding
chipseq_peak_12712	chr8	30902623	30903124	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-186789	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding
chipseq_peak_7026	chr18	79027995	79028630	+	0	NA	intron (NM_053099, intron 2 of 5)	intron (NM_053099, intron 2 of 5)	81079	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
chipseq_peak_4740	chr14	120578134	120579478	+	0	NA	Intergenic	Intergenic	100345	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding
chipseq_peak_1282	chr10	13972926	13974063	+	0	NA	intron (NM_010437, intron 1 of 8)	intron (NM_010437, intron 1 of 8)	7115	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chipseq_peak_937	chr1	152764557	152765738	+	0	NA	Intergenic	Intergenic	-1395	NM_026369	67771	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding
chipseq_peak_2838	chr12	35750632	35750919	+	0	NA	Intergenic	Intergenic	-55657	NR_045050	71581	Mm.100110	NR_045050		9130015A21Rik	-	RIKEN cDNA 9130015A21 gene	ncRNA
chipseq_peak_6569	chr18	8404451	8405274	+	0	NA	Intergenic	Intergenic	535665	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chipseq_peak_9313	chr3	143117446	143117933	+	0	NA	Intergenic	Intergenic	-125366	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA
chipseq_peak_6095	chr16	88408045	88408820	+	0	NA	Intergenic	Intergenic	98546	NM_181490	239931	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding
chipseq_peak_9159	chr3	120304178	120304800	+	0	NA	Intergenic	Intergenic	-521101	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
chipseq_peak_746	chr1	122575944	122576296	+	0	NA	Intergenic	RLTR25B|LTR|ERVK	-1008140	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
chipseq_peak_7642	chr2	44596399	44596821	+	0	NA	intron (NM_172662, intron 6 of 10)	intron (NM_172662, intron 6 of 10)	265012	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_2041	chr10	120922585	120922872	+	0	NA	TTS (NM_001081193)	TTS (NM_001081193)	-23757	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding
chipseq_peak_6538	chr17	91425151	91425579	+	0	NA	Intergenic	Intergenic	-332563	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
chipseq_peak_3019	chr12	58200893	58201468	+	0	NA	Intergenic	Intergenic	-10624	NM_009216	20605	Mm.278336	NM_009216		Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding
chipseq_peak_745	chr1	122488616	122489071	+	0	NA	Intergenic	Lx9|LINE|L1	-920863	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
chipseq_peak_9808	chr4	53537616	53539249	+	0	NA	exon (NM_133891, exon 7 of 16)	exon (NM_133891, exon 7 of 16)	-93039	NM_176966	319636	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl|OTTMUSG00000007002	fibronectin type III and SPRY domain containing 1-like	protein-coding
chipseq_peak_5123	chr15	52160475	52160972	+	0	NA	Intergenic	Intergenic	120616	NM_175503	239435	Mm.24204	NM_175503	ENSMUSG00000068522	Aard	A5D3|AV328152	alanine and arginine rich domain containing protein	protein-coding
chipseq_peak_13210	chr8	113873564	113874314	+	0	NA	Intergenic	MIRb|SINE|MIR	-25100	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding
chipseq_peak_8004	chr2	97232731	97233525	+	0	NA	intron (NM_001289742, intron 5 of 7)	intron (NM_001289742, intron 5 of 7)	-234529	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_3315	chr12	99836164	99836613	+	0	NA	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	47054	NM_030172	78767	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding
chipseq_peak_3726	chr13	77816244	77816993	+	0	NA	intron (NR_028109, intron 4 of 10)	intron (NR_028109, intron 4 of 10)	107928	NM_001163420	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding
chipseq_peak_9826	chr4	56088650	56089369	+	0	NA	Intergenic	Intergenic	-556534	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding
chipseq_peak_10284	chr5	13157451	13158590	+	0	NA	Intergenic	Intergenic	-238764	NM_001243072	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
chipseq_peak_4505	chr14	87800284	87800707	+	0	NA	Intergenic	RLTR19-int|LTR|ERVK	383912	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding
chipseq_peak_5987	chr16	74743537	74743906	+	0	NA	Intergenic	Intergenic	-332809	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_2054	chr10	122886848	122887403	+	0	NA	intron (NM_176919, intron 6 of 8)	intron (NM_176919, intron 6 of 8)	98599	NR_029527	387251		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA
chipseq_peak_2099	chr10	126748922	126749609	+	0	NA	Intergenic	Intergenic	-38874	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA
chipseq_peak_2954	chr12	49992232	49993127	+	0	NA	Intergenic	Intergenic	-511817	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_3977	chr13	103067831	103068582	+	0	NA	intron (NM_175171, intron 3 of 28)	intron (NM_175171, intron 3 of 28)	266286	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding
chipseq_peak_9248	chr3	134015810	134017025	+	0	NA	Intergenic	Intergenic	-220078	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding
chipseq_peak_1941	chr10	107159251	107159544	+	0	NA	Intergenic	Intergenic	-35733	NM_198636	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding
chipseq_peak_11993	chr6	144452077	144453045	+	0	NA	Intergenic	Intergenic	-220307	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA
chipseq_peak_3625	chr13	49485543	49485861	+	0	NA	intron (NM_025495, intron 5 of 7)	intron (NM_025495, intron 5 of 7)	-19108	NM_001012324	407800	Mm.386931	NM_001012324	ENSMUSG00000043631	Ecm2	9030618O22Rik|BC065151|tenonectin	extracellular matrix protein 2, female organ and adipocyte specific	protein-coding
chipseq_peak_9539	chr4	14773490	14773823	+	0	NA	intron (NM_028499, intron 3 of 7)	intron (NM_028499, intron 3 of 7)	22396	NM_028499	73314	Mm.52613	NM_028499	ENSMUSG00000023151	Lrrc69	1700034K16Rik	leucine rich repeat containing 69	protein-coding
chipseq_peak_3585	chr13	45659776	45660218	+	0	NA	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	152553	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding
chipseq_peak_8939	chr3	80588295	80588661	+	0	NA	Intergenic	MTC-int|LTR|ERVL-MaLR	214313	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_8749	chr3	55397891	55398936	+	0	NA	intron (NM_019978, intron 4 of 16)	intron (NM_019978, intron 4 of 16)	-63345	NM_001111051	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
chipseq_peak_11407	chr6	40347542	40347978	+	0	NA	intron (NM_023538, intron 3 of 15)	intron (NM_023538, intron 3 of 15)	22282	NM_023538	69923	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding
chipseq_peak_6710	chr18	30643669	30644315	+	0	NA	Intergenic	Intergenic	371096	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_6072	chr16	83390955	83391323	+	0	NA	Intergenic	Intergenic	-980004	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
chipseq_peak_13874	chr9	110051496	110051906	+	0	NA	promoter-TSS (NM_001311164)	promoter-TSS (NM_001311164)	-320	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding
chipseq_peak_12681	chr8	22943902	22944686	+	0	NA	Intergenic	Intergenic	-30542	NM_001277280	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding
chipseq_peak_9810	chr4	53758600	53759171	+	0	NA	intron (NM_139309, intron 9 of 9)	intron (NM_139309, intron 9 of 9)	-20820	NM_009317	21350	Mm.56955	NM_009317		Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding
chipseq_peak_5081	chr15	46271400	46271804	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-52983	NR_045509	71120	Mm.158571	NR_045509	ENSMUSG00000099751	1700022A22Rik	4933413D07Rik	RIKEN cDNA 1700022A22 gene	ncRNA
chipseq_peak_6910	chr18	63771178	63771620	+	0	NA	intron (NM_001014981, intron 14 of 27)	intron (NM_001014981, intron 14 of 27)	62704	NM_001014981	104082	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding
chipseq_peak_3538	chr13	38333523	38333831	+	0	NA	Intergenic	Intergenic	-12039	NM_007556	12161	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding
chipseq_peak_6159	chr17	4381876	4383328	+	0	NA	Intergenic	Intergenic	-252378	NR_130984	75117	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA
chipseq_peak_2449	chr11	80669331	80670845	+	0	NA	intron (NM_177390, intron 11 of 21)	intron (NM_177390, intron 11 of 21)	109937	NM_177390	338367	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding
chipseq_peak_234	chr1	38819408	38821474	+	0	NA	intron (NM_001029878, intron 1 of 10)	L1MDa|LINE|L1	774	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding
chipseq_peak_13316	chr9	13659735	13660339	+	0	NA	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	-2423	NM_173776	270118	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like 2 (Drosophila)	protein-coding
chipseq_peak_11380	chr6	36815219	36817378	+	0	NA	Intergenic	Intergenic	-4937	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_5457	chr15	102892500	102892845	+	0	NA	Intergenic	L1M5|LINE|L1	-28459	NM_010464	15422	Mm.207062	NM_010464	ENSMUSG00000001655	Hoxc13	-	homeobox C13	protein-coding
chipseq_peak_4412	chr14	75279699	75280979	+	0	NA	intron (NM_019775, intron 10 of 10)	MER58B|DNA|hAT-Charlie	-4034	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding
chipseq_peak_9414	chr3	155548180	155548769	+	0	NA	Intergenic	Intergenic	-427880	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
chipseq_peak_4895	chr15	22535055	22536258	+	0	NA	Intergenic	Intergenic	179328	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding
chipseq_peak_9596	chr4	22946206	22948200	+	0	NA	Intergenic	Intergenic	456655	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
chipseq_peak_6752	chr18	38938272	38938903	+	0	NA	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-19888	NM_010197	14164	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding
chipseq_peak_1292	chr10	14952949	14953811	+	0	NA	Intergenic	Intergenic	193091	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding
chipseq_peak_812	chr1	132827074	132827406	+	0	NA	Intergenic	L1MB8|LINE|L1	-53115	NM_010732	16980	Mm.39640	NM_010732	ENSMUSG00000026443	Lrrn2	5730406J09Rik|NLRR-2	leucine rich repeat protein 2, neuronal	protein-coding
chipseq_peak_5258	chr15	66730186	66731557	+	0	NA	intron (NM_009375, intron 27 of 47)	intron (NM_009375, intron 27 of 47)	60101	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding
chipseq_peak_2	chr1	3900277	3900886	+	0	NA	Intergenic	Intergenic	-229083	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X Kell blood group precursor related family member 4	protein-coding
chipseq_peak_11990	chr6	144312493	144313048	+	0	NA	Intergenic	Intergenic	-103202	NM_001243163	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
chipseq_peak_6665	chr18	23862519	23863519	+	0	NA	intron (NM_001162942, intron 5 of 7)	intron (NM_001162942, intron 5 of 7)	59049	NM_153058	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding
chipseq_peak_479	chr1	69790320	69790945	+	0	NA	Intergenic	Intergenic	-36338	NM_001271533	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding
chipseq_peak_8948	chr3	81658592	81659047	+	0	NA	Intergenic	Intergenic	-273797	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
chipseq_peak_11040	chr5	132452064	132452674	+	0	NA	intron (NM_177047, intron 1 of 18)	intron (NM_177047, intron 1 of 18)	89974	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
chipseq_peak_2003	chr10	113586262	113586983	+	0	NA	promoter-TSS (NR_035418)	promoter-TSS (NR_035418)	44	NR_035418	100316831		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA
chipseq_peak_4237	chr14	33180067	33180484	+	0	NA	intron (NM_001146022, intron 1 of 58)	L1ME3E|LINE|L1	4791	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding
chipseq_peak_12057	chr7	35848383	35848871	+	0	NA	Intergenic	Intergenic	-45638	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding
chipseq_peak_6056	chr16	79434873	79435170	+	0	NA	Intergenic	Intergenic	-343924	NM_178855	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
chipseq_peak_13465	chr9	40464932	40465250	+	0	NA	Intergenic	Intergenic	-9327	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding
chipseq_peak_10111	chr4	104705809	104706835	+	0	NA	intron (NR_104385, intron 10 of 15)	intron (NR_104385, intron 10 of 15)	-59995	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding
chipseq_peak_10728	chr5	82346613	82346916	+	0	NA	Intergenic	Intergenic	452301	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
chipseq_peak_12487	chr7	120956826	120957391	+	0	NA	TTS (NM_007672)	TTS (NM_007672)	25204	NM_007672	12585	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding
chipseq_peak_3714	chr13	76844622	76845255	+	0	NA	intron (NM_030174, intron 15 of 20)	intron (NM_030174, intron 15 of 20)	290530	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding
chipseq_peak_9256	chr3	135556984	135557602	+	0	NA	intron (NM_027288, intron 13 of 16)	Lx2|LINE|L1	71682	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding
chipseq_peak_5148	chr15	55162731	55163016	+	0	NA	intron (NM_145470, intron 3 of 8)	intron (NM_145470, intron 3 of 8)	29437	NM_001037937	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding
chipseq_peak_1278	chr10	13564815	13565644	+	0	NA	Intergenic	Intergenic	-12087	NM_019961	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding
chipseq_peak_11694	chr6	97740065	97740690	+	0	NA	Intergenic	Intergenic	-66681	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding
chipseq_peak_8396	chr2	170661871	170662797	+	0	NA	Intergenic	Intergenic	-60317	NR_027825	67637	Mm.158163	NM_026287	ENSMUSG00000043583	4930470P17Rik	-	RIKEN cDNA 4930470P17 gene	ncRNA
chipseq_peak_9673	chr4	30933454	30933980	+	0	NA	Intergenic	Intergenic	269121	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
chipseq_peak_11618	chr6	78327830	78328094	+	0	NA	Intergenic	Intergenic	-42923	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding
chipseq_peak_8532	chr3	25549109	25549637	+	0	NA	intron (NM_138666, intron 5 of 7)	intron (NM_138666, intron 5 of 7)	603934	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_9598	chr4	22990972	22991693	+	0	NA	Intergenic	Lx9|LINE|L1	500784	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
chipseq_peak_13035	chr8	82936551	82937171	+	0	NA	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	73505	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding
chipseq_peak_739	chr1	121396541	121396855	+	0	NA	Intergenic	Intergenic	-34369	NM_029955	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding
chipseq_peak_11309	chr6	27370937	27371438	+	0	NA	intron (NM_008174, intron 8 of 10)	intron (NM_008174, intron 8 of 10)	565563	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA
chipseq_peak_9034	chr3	100916806	100917070	+	0	NA	Intergenic	Intergenic	-5555	NM_194343	229644	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding
chipseq_peak_2425	chr11	76639279	76639839	+	0	NA	Intergenic	Intergenic	-32911	NM_177182	320522	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding
chipseq_peak_11817	chr6	107561261	107561594	+	0	NA	intron (NM_008516, intron 1 of 1)	intron (NM_008516, intron 1 of 1)	31701	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding
chipseq_peak_10807	chr5	97069258	97069740	+	0	NA	intron (NM_080708, intron 14 of 15)	intron (NM_080708, intron 14 of 15)	42097	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding
chipseq_peak_6766	chr18	40629791	40630196	+	0	NA	Intergenic	Intergenic	371632	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding
chipseq_peak_3590	chr13	45867250	45867731	+	0	NA	intron (NM_009124, intron 2 of 7)	intron (NM_009124, intron 2 of 7)	97501	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding
chipseq_peak_9447	chr4	5298969	5299615	+	0	NA	Intergenic	Intergenic	-333036	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA
chipseq_peak_9344	chr3	147886314	147886848	+	0	NA	Intergenic	Intergenic	1034214	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding
chipseq_peak_13717	chr9	83338802	83339115	+	0	NA	Intergenic	Lx8|LINE|L1	-92589	NR_102437	100039186	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA
chipseq_peak_13054	chr8	86389360	86390521	+	0	NA	Intergenic	Intergenic	176650	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
chipseq_peak_12972	chr8	67396831	67397359	+	0	NA	Intergenic	Intergenic	-93663	NM_008673	17960	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding
chipseq_peak_11363	chr6	34109525	34111824	+	0	NA	intron (NM_028886, intron 15 of 19)	intron (NM_028886, intron 15 of 19)	66380	NM_021435	58246	Mm.245527	NM_021435		Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding
chipseq_peak_8928	chr3	80206871	80208731	+	0	NA	Intergenic	Intergenic	321871	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_2767	chr12	26885826	26887102	+	0	NA	Intergenic	Intergenic	228531	NR_045052	100504347	Mm.130500	NR_045052		Gm20187	-	predicted gene, 20187	ncRNA
chipseq_peak_3911	chr13	95118291	95118627	+	0	NA	intron (NM_172263, intron 2 of 19)	intron (NM_172263, intron 2 of 19)	104591	NM_001170669	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding
chipseq_peak_10121	chr4	106305231	106305602	+	0	NA	Intergenic	L1M4|LINE|L1	-10797	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding
chipseq_peak_2053	chr10	122806646	122809066	+	0	NA	intron (NM_176919, intron 3 of 8)	intron (NM_176919, intron 3 of 8)	128541	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA
chipseq_peak_14124	chrX	161006271	161007087	+	0	NA	Intergenic	L1MB8|LINE|L1	-11998	NM_001024624	382253	Mm.443717	NM_001024624	ENSMUSG00000031292	Cdkl5	BC038161|Stk9	cyclin-dependent kinase-like 5	protein-coding
chipseq_peak_6046	chr16	78069523	78069951	+	0	NA	Intergenic	MIRc|SINE|MIR	185717	NR_045698	100503619	Mm.387531	NR_045698		E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA
chipseq_peak_8787	chr3	60883795	60884671	+	0	NA	Intergenic	Intergenic	-118552	NM_008772	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding
chipseq_peak_3275	chr12	93281825	93282629	+	0	NA	Intergenic	Intergenic	162596	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA
chipseq_peak_7937	chr2	79115172	79116013	+	0	NA	Intergenic	Intergenic	-139834	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding
chipseq_peak_5865	chr16	65029674	65030238	+	0	NA	intron (NM_008310, intron 2 of 2)	intron (NM_008310, intron 2 of 2)	75828	NM_008310	15557	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding
chipseq_peak_4892	chr15	21503459	21503909	+	0	NA	intron (NM_001008420, intron 5 of 11)	intron (NM_001008420, intron 5 of 11)	392232	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
chipseq_peak_9331	chr3	145743045	145743391	+	0	NA	Intergenic	Intergenic	-15474	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding
chipseq_peak_4522	chr14	89076043	89076509	+	0	NA	Intergenic	L2|LINE|L2	-604880	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_2654	chr12	6834034	6834484	+	0	NA	Intergenic	Intergenic	546071	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_12711	chr8	30584771	30585291	+	0	NA	Intergenic	Intergenic	16636	NR_045856	71314	Mm.158666	NR_045856	ENSMUSG00000097044	4933433F19Rik	-	RIKEN cDNA 4933433F19 gene	ncRNA
chipseq_peak_13889	chr9	112261294	112263063	+	0	NA	intron (NR_033433, intron 1 of 3)	intron (NR_033433, intron 1 of 3)	5604	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_8536	chr3	25776299	25777942	+	0	NA	intron (NM_138666, intron 5 of 7)	intron (NM_138666, intron 5 of 7)	376187	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_7434	chr2	8393056	8394537	+	0	NA	Intergenic	Intergenic	-795719	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_3637	chr13	53707484	53707796	+	0	NA	Intergenic	L1MDb|LINE|L1	59055	NR_131010	75252	Mm.401989	NR_131010		4930555G21Rik	-	RIKEN cDNA 4930555G21 gene	ncRNA
chipseq_peak_7734	chr2	56119395	56119931	+	0	NA	Intergenic	Intergenic	-666148	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
chipseq_peak_8241	chr2	140214538	140216508	+	0	NA	Intergenic	Intergenic	44877	NM_027093	69487	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding
chipseq_peak_13705	chr9	79031142	79031843	+	0	NA	Intergenic	Intergenic	415946	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding
chipseq_peak_8688	chr3	50269200	50270112	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	173957	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
chipseq_peak_11112	chr5	148927923	148928739	+	0	NA	intron (NM_153572, intron 1 of 10)	intron (NM_153572, intron 1 of 10)	316	NM_153572	231912	Mm.397405	NM_153572		Katnal1	-	katanin p60 subunit A-like 1	protein-coding
chipseq_peak_1153	chr1	184054750	184054965	+	0	NA	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	20396	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
chipseq_peak_4169	chr14	17712459	17713286	+	0	NA	intron (NM_001113417, intron 1 of 9)	MER2|DNA|TcMar-Tigger	51912	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding
chipseq_peak_12428	chr7	110028879	110029199	+	0	NA	intron (NM_181517, intron 2 of 24)	intron (NM_181517, intron 2 of 24)	10614	NM_181517	233726	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding
chipseq_peak_1107	chr1	177307463	177308816	+	0	NA	Intergenic	Intergenic	-59372	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_13574	chr9	53916060	53916830	+	0	NA	intron (NM_177769, intron 10 of 10)	intron (NM_177769, intron 10 of 10)	58856	NM_177769	270162	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding
chipseq_peak_1566	chr10	52823170	52823997	+	0	NA	intron (NM_178675, intron 1 of 7)	intron (NM_178675, intron 1 of 7)	133082	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
chipseq_peak_11758	chr6	103083468	103084262	+	0	NA	Intergenic	Intergenic	289481	NR_105792	102466636		NR_105792	ENSMUSG00000098533	Mir6373	Gm27870|mmu-mir-6373	microRNA 6373	ncRNA
chipseq_peak_7860	chr2	67477816	67478122	+	0	NA	intron (NM_001024618, intron 2 of 8)	intron (NM_001024618, intron 2 of 8)	31967	NM_001024618	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding
chipseq_peak_2793	chr12	30109773	30110224	+	0	NA	intron (NM_009417, intron 5 of 16)	intron (NM_009417, intron 5 of 16)	22626	NM_009417	22018	Mm.4991	NM_009417	ENSMUSG00000020673	Tpo	-	thyroid peroxidase	protein-coding
chipseq_peak_12619	chr8	9839218	9840745	+	0	NA	Intergenic	RSINE1|SINE|B4	-68958	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding
chipseq_peak_1014	chr1	166749093	166751274	+	0	NA	Intergenic	L1M3|LINE|L1	-68338	NM_172844	240894	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding
chipseq_peak_12093	chr7	49804447	49805787	+	0	NA	intron (NM_133740, intron 9 of 15)	intron (NM_133740, intron 9 of 15)	26759	NM_133740	71974	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding
chipseq_peak_6249	chr17	43092247	43092651	+	0	NA	Intergenic	Intergenic	65842	NR_045153	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA
chipseq_peak_13386	chr9	27766280	27768036	+	0	NA	Intergenic	Intergenic	-24111	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_11406	chr6	40225783	40226368	+	0	NA	intron (NM_001004182, intron 2 of 2)	intron (NM_001004182, intron 2 of 2)	-99403	NM_023538	69923	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding
chipseq_peak_10351	chr5	21424859	21425794	+	0	NA	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	423	NM_177869	330050	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding
chipseq_peak_12707	chr8	29775303	29775617	+	0	NA	Intergenic	Intergenic	-555824	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_1364	chr10	26564367	26565008	+	0	NA	Intergenic	Intergenic	109964	NR_033633	667572	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_5843	chr16	63782169	63782515	+	0	NA	intron (NM_010140, intron 2 of 16)	intron (NM_010140, intron 2 of 16)	81815	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_3987	chr13	104726732	104727152	+	0	NA	intron (NM_026072, intron 10 of 13)	intron (NM_026072, intron 10 of 13)	90011	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
chipseq_peak_4432	chr14	76875954	76876378	+	0	NA	Intergenic	Intergenic	160451	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding
chipseq_peak_1463	chr10	37763864	37764163	+	0	NA	Intergenic	Intergenic	-411761	NR_131035	75877	Mm.402094	NR_131035		4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA
chipseq_peak_3378	chr13	5072707	5074001	+	0	NA	Intergenic	Intergenic	-464190	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding
chipseq_peak_12499	chr7	122512449	122513439	+	0	NA	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	-158800	NM_019430	54376	Mm.444212	NM_019430		Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
chipseq_peak_3460	chr13	18337871	18338424	+	0	NA	intron (NM_175006, intron 2 of 7)	intron (NM_175006, intron 2 of 7)	43892	NM_175006	218030	Mm.352263	NM_175006	ENSMUSG00000009734	Pou6f2	D130006K24Rik|RPF-1	POU domain, class 6, transcription factor 2	protein-coding
chipseq_peak_4083	chr13	113682479	113683390	+	0	NA	Intergenic	Intergenic	-19258	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding
chipseq_peak_12658	chr8	16247320	16247726	+	0	NA	intron (NM_053171, intron 12 of 69)	intron (NM_053171, intron 12 of 69)	-78685	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_70	chr1	18758130	18759436	+	0	NA	Intergenic	Intergenic	-344239	NM_153154	226896	Mm.244858	NM_153154	ENSMUSG00000042596	Tfap2d	Tcfap2d	transcription factor AP-2, delta	protein-coding
chipseq_peak_3715	chr13	76856965	76857411	+	0	NA	intron (NM_030174, intron 15 of 20)	intron (NM_030174, intron 15 of 20)	278280	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding
chipseq_peak_3091	chr12	67093910	67094337	+	0	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	128426	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_8681	chr3	49944481	49945300	+	0	NA	Intergenic	Intergenic	-187574	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding
chipseq_peak_4998	chr15	37438331	37439536	+	0	NA	intron (NM_029113, intron 2 of 3)	intron (NM_029113, intron 2 of 3)	-6269	NR_045283	100503538	Mm.445166	NR_045283	ENSMUSG00000086992	Gm15941	OTTMUSG00000028027	predicted gene 15941	ncRNA
chipseq_peak_1829	chr10	97060475	97062053	+	0	NA	TTS (NR_045358)	TTS (NR_045358)	25496	NR_045358	75301	Mm.108650	NR_045358		4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA
chipseq_peak_1033	chr1	169069481	169070133	+	0	NA	Intergenic	Intergenic	461657	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
chipseq_peak_13684	chr9	75100168	75100617	+	0	NA	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	29186	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding
chipseq_peak_6722	chr18	31300572	31301414	+	0	NA	intron (NM_009065, intron 1 of 4)	intron (NM_009065, intron 1 of 4)	16135	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_2439	chr11	80340913	80341407	+	0	NA	intron (NM_139228, intron 7 of 8)	intron (NM_139228, intron 7 of 8)	36855	NM_027472	70591	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding
chipseq_peak_8481	chr3	17862123	17863068	+	0	NA	Intergenic	Intergenic	66933	NR_029814	723950		NR_029814	ENSMUSG00000093073	Mir124a-2	Mirn124a-2|mir-124-2|mir-124a-2	microRNA 124a-2	ncRNA
chipseq_peak_2107	chr10	128409793	128410122	+	0	NA	promoter-TSS (NM_027257)	promoter-TSS (NM_027257)	-161	NM_027257	69917	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b	nucleic acid binding protein 2	protein-coding
chipseq_peak_3257	chr12	89977584	89977967	+	0	NA	intron (NM_172544, intron 15 of 19)	intron (NM_172544, intron 15 of 19)	165292	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
chipseq_peak_12507	chr7	125963870	125964493	+	0	NA	intron (NM_001101488, intron 2 of 6)	intron (NM_001101488, intron 2 of 6)	118230	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding
chipseq_peak_10947	chr5	117607582	117608117	+	0	NA	intron (NM_001312914, intron 4 of 19)	intron (NM_001312914, intron 4 of 19)	193847	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding
chipseq_peak_11502	chr6	53398065	53398301	+	0	NA	TTS (NR_015553)	TTS (NR_015553)	110888	NR_015553	320189	Mm.227444	NR_015553		9430076C15Rik	-	RIKEN cDNA 9430076C15 gene	ncRNA
chipseq_peak_9791	chr4	51448941	51449369	+	0	NA	Intergenic	UCON11|Unknown|Unknown	232477	NM_001162865	74914	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding
chipseq_peak_12753	chr8	38589498	38589993	+	0	NA	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	71763	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding
chipseq_peak_3486	chr13	24101955	24102639	+	0	NA	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-111083	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding
chipseq_peak_588	chr1	86681495	86682255	+	0	NA	Intergenic	Intergenic	-11302	NM_010933	18159	Mm.12802	NM_010933	ENSMUSG00000026241	Nppc	CNP|lbab	natriuretic peptide type C	protein-coding
chipseq_peak_8590	chr3	34330295	34330664	+	0	NA	Intergenic	Intergenic	-229902	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA
chipseq_peak_11063	chr5	136442744	136443392	+	0	NA	intron (NM_198602, intron 2 of 22)	intron (NM_198602, intron 2 of 22)	-67265	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA
chipseq_peak_1520	chr10	46046959	46047992	+	0	NA	Intergenic	Intergenic	-197273	NR_028274	100302593		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA
chipseq_peak_7	chr1	6320462	6321176	+	0	NA	Intergenic	Intergenic	-38512	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding
chipseq_peak_263	chr1	41446597	41447685	+	0	NA	Intergenic	Intergenic	-265889	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_2651	chr12	6579880	6581164	+	0	NA	Intergenic	MIR|SINE|MIR	799808	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_3329	chr12	102723896	102724232	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-19195	NM_172584	217837	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding
chipseq_peak_1815	chr10	95228185	95228716	+	0	NA	intron (NM_009950, intron 2 of 2)	intron (NM_009950, intron 2 of 2)	-82625	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA
chipseq_peak_2339	chr11	47663490	47663821	+	0	NA	Intergenic	Intergenic	-284353	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding
chipseq_peak_4668	chr14	112238989	112240515	+	0	NA	Intergenic	L1M4|LINE|L1	218322	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
chipseq_peak_11827	chr6	108335014	108335786	+	0	NA	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	122304	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding
chipseq_peak_5719	chr16	47762503	47763162	+	0	NA	Intergenic	Intergenic	-520903	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_4683	chr14	114566773	114568350	+	0	NA	Intergenic	Intergenic	-264404	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_9335	chr3	146337582	146338343	+	0	NA	Intergenic	Intergenic	40982	NR_033542	100038607	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	ENSMUSG00000074175	predicted gene 10636	ncRNA
chipseq_peak_2697	chr12	12567225	12568920	+	0	NA	Intergenic	Intergenic	-175597	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
chipseq_peak_10064	chr4	97648692	97649295	+	0	NA	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-64402	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA
chipseq_peak_5871	chr16	65963665	65964467	+	0	NA	Intergenic	Intergenic	148433	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like 3 (Drosophila)	protein-coding
chipseq_peak_6375	chr17	66349693	66350344	+	0	NA	intron (NM_001114098, intron 10 of 14)	intron (NM_001114098, intron 10 of 14)	99732	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding
chipseq_peak_1668	chr10	68355355	68356373	+	0	NA	Intergenic	Intergenic	-34722	NR_045357	75148	Mm.23505	NR_045357		4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA
chipseq_peak_3549	chr13	41339421	41340174	+	0	NA	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	19204	NM_017464	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding
chipseq_peak_6502	chr17	88529374	88529959	+	0	NA	promoter-TSS (NM_028658)	promoter-TSS (NM_028658)	-458	NM_028658	73825	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding
chipseq_peak_10239	chr5	4009548	4010003	+	0	NA	intron (NM_194462, intron 20 of 47)	intron (NM_194462, intron 20 of 47)	81589	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding
chipseq_peak_7751	chr2	57644332	57644951	+	0	NA	Intergenic	Intergenic	-353514	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
chipseq_peak_11691	chr6	97684133	97684740	+	0	NA	Intergenic	Intergenic	-66779	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013	FERM domain containing 4B	protein-coding
chipseq_peak_4072	chr13	111904863	111905373	+	0	NA	Intergenic	Intergenic	37182	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA
chipseq_peak_2602	chr11	111781092	111781573	+	0	NA	Intergenic	Intergenic	715168	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
chipseq_peak_1863	chr10	99576478	99578310	+	0	NA	Intergenic	Intergenic	-31777	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA
chipseq_peak_13324	chr9	16024638	16025161	+	0	NA	intron (NM_001080814, intron 5 of 24)	intron (NM_001080814, intron 5 of 24)	-150343	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
chipseq_peak_13677	chr9	72475453	72475929	+	0	NA	intron (NM_009359, intron 9 of 11)	intron (NM_009359, intron 9 of 11)	16268	NM_009359	21778	Mm.14485	NM_009359		Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding
chipseq_peak_5067	chr15	44820136	44821028	+	0	NA	Intergenic	Intergenic	-32519	NM_176998	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_1257	chr10	9901996	9902292	+	0	NA	Intergenic	Intergenic	-1104	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding
chipseq_peak_1363	chr10	26178437	26178860	+	0	NA	Intergenic	Intergenic	-51059	NM_001013766	268288	Mm.213322	NM_001013766	ENSMUSG00000051354	Samd3	Gm623	sterile alpha motif domain containing 3	protein-coding
chipseq_peak_2084	chr10	125121749	125122835	+	0	NA	Intergenic	Intergenic	206243	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
chipseq_peak_6213	chr17	29668403	29668978	+	0	NA	intron (NM_028791, intron 2 of 23)	intron (NM_028791, intron 2 of 23)	8095	NM_028791	74157	Mm.390979	NM_028791		Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding
chipseq_peak_684	chr1	105876544	105877026	+	0	NA	Intergenic	L1MC5a|LINE|L1	96062	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding
chipseq_peak_8629	chr3	40055329	40055790	+	0	NA	Intergenic	Intergenic	467353	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_10506	chr5	53294689	53295246	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	27861	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding
chipseq_peak_1768	chr10	89995462	89996612	+	0	NA	intron (NM_001128086, intron 1 of 24)	intron (NM_001128086, intron 1 of 24)	122528	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_10424	chr5	40394763	40395486	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-750493	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_8983	chr3	84731238	84732555	+	0	NA	Intergenic	Intergenic	65704	NM_177260	320782	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding
chipseq_peak_5799	chr16	56664870	56665197	+	0	NA	intron (NM_001014424, intron 26 of 36)	intron (NM_001014424, intron 26 of 36)	52417	NM_019678	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding
chipseq_peak_1788	chr10	91521166	91521560	+	0	NA	Intergenic	Intergenic	-349744	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
chipseq_peak_4497	chr14	86781658	86781891	+	0	NA	intron (NM_019670, intron 25 of 27)	intron (NM_019670, intron 25 of 27)	359340	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
chipseq_peak_12790	chr8	43369148	43369791	+	0	NA	Intergenic	RMER5|LTR|ERV1	-62460	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding
chipseq_peak_3277	chr12	93766118	93766586	+	0	NA	Intergenic	Intergenic	-160986	NR_106201	102466888		NR_106201	ENSMUSG00000098498	Mir8099-2	Gm27692|mmu-mir-8099-2	microRNA 8099-2	ncRNA
chipseq_peak_8935	chr3	80533807	80534543	+	0	NA	Intergenic	Intergenic	268616	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_2694	chr12	12343352	12343650	+	0	NA	intron (NM_029758, intron 4 of 12)	L2b|LINE|L2	48974	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
chipseq_peak_1196	chr1	192937243	192938284	+	0	NA	intron (NM_001301370, intron 4 of 8)	L1M5|LINE|L1	-82011	NM_198247	214791	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding
chipseq_peak_3055	chr12	62442043	62442931	+	0	NA	Intergenic	Intergenic	-245300	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA
chipseq_peak_6965	chr18	68719879	68720377	+	0	NA	Intergenic	Intergenic	-19272	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA
chipseq_peak_7020	chr18	78616558	78618345	+	0	NA	Intergenic	Intergenic	-20501	NM_207651	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
chipseq_peak_5527	chr16	21727825	21728417	+	0	NA	Intergenic	Intergenic	-33456	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding
chipseq_peak_873	chr1	141878712	141879068	+	0	NA	Intergenic	L1M3f|LINE|L1	-1222488	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_5780	chr16	54245716	54247236	+	0	NA	Intergenic	Intergenic	1036761	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
chipseq_peak_2902	chr12	42986506	42987354	+	0	NA	Intergenic	Intergenic	1223138	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
chipseq_peak_13278	chr9	5309476	5309829	+	0	NA	intron (NM_007609, intron 1 of 8)	intron (NM_007609, intron 1 of 8)	803	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding
chipseq_peak_4929	chr15	26715047	26716598	+	0	NA	intron (NM_176959, intron 2 of 3)	intron (NM_176959, intron 2 of 3)	179742	NM_176959	448987	Mm.253378	NM_176959		Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding
chipseq_peak_7438	chr2	8469711	8472384	+	0	NA	Intergenic	Intergenic	-718468	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_9772	chr4	47823985	47824801	+	0	NA	Intergenic	Intergenic	-220912	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding
chipseq_peak_2309	chr11	41918917	41919427	+	0	NA	intron (NM_177408, intron 7 of 8)	intron (NM_177408, intron 7 of 8)	81542	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding
chipseq_peak_7963	chr2	83332242	83333075	+	0	NA	Intergenic	Intergenic	-311920	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
chipseq_peak_4421	chr14	76479727	76480043	+	0	NA	intron (NM_001310646, intron 3 of 4)	intron (NM_001310646, intron 3 of 4)	-8551	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding
chipseq_peak_2080	chr10	125016792	125017332	+	0	NA	Intergenic	Intergenic	311473	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
chipseq_peak_4553	chr14	93719257	93719902	+	0	NA	intron (NM_001081377, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	169309	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_12840	chr8	49362135	49363101	+	0	NA	Intergenic	Intergenic	-687928	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_12014	chr6	148097042	148098073	+	0	NA	intron (NM_178797, intron 1 of 12)	intron (NM_178797, intron 1 of 12)	50141	NM_178797	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding
chipseq_peak_10666	chr5	73585005	73586217	+	0	NA	Intergenic	Intergenic	46810	NM_153568	231296	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding
chipseq_peak_5405	chr15	94287945	94288443	+	0	NA	intron (NM_177431, intron 29 of 38)	intron (NM_177431, intron 29 of 38)	40992	NR_045629	328594	Mm.135523	NR_045629		D630010B17Rik	Gm811	RIKEN cDNA D630010B17 gene	ncRNA
chipseq_peak_11148	chr6	8157168	8157626	+	0	NA	intron (NM_001037865, intron 9 of 34)	intron (NM_001037865, intron 9 of 34)	35220	NM_001037865	213945	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding
chipseq_peak_6936	chr18	66780403	66782516	+	0	NA	Intergenic	RMER12B|LTR|ERVK	79028	NM_016977	17202	Mm.229447	NM_016977	ENSMUSG00000047259	Mc4r	Mc4-r	melanocortin 4 receptor	protein-coding
chipseq_peak_13144	chr8	102464117	102464445	+	0	NA	Intergenic	Intergenic	320830	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_6100	chr16	89550157	89550658	+	0	NA	Intergenic	Intergenic	20776	NM_001113406	16693	Mm.310906	NM_001113406	ENSMUSG00000091212	Krtap11-1	AA162070|AA589467|AV018433|Hacl1|KAP11.1|PRED29	keratin associated protein 11-1	protein-coding
chipseq_peak_8925	chr3	80058613	80059138	+	0	NA	Intergenic	Intergenic	172945	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_5952	chr16	73259005	73260039	+	0	NA	Intergenic	Intergenic	596373	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_10136	chr4	117039896	117041229	+	0	NA	intron (NM_175135, intron 3 of 9)	intron (NM_175135, intron 3 of 9)	21154	NM_175135	108067	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding
chipseq_peak_10420	chr5	40229136	40230037	+	0	NA	Intergenic	B1F|SINE|Alu	-584955	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_534	chr1	76466547	76466937	+	0	NA	Intergenic	Intergenic	-22391	NR_038013	620079	Mm.378379	NR_038012	ENSMUSG00000100553	Gm17751	-	predicted gene, 17751	ncRNA
chipseq_peak_1347	chr10	24340951	24341347	+	0	NA	Intergenic	Intergenic	117632	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding
chipseq_peak_13514	chr9	47757876	47758173	+	0	NA	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	60184	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA
chipseq_peak_3366	chr12	119189559	119190354	+	0	NA	exon (NM_177290, exon 6 of 14)	exon (NM_177290, exon 6 of 14)	48320	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding
chipseq_peak_10101	chr4	104297352	104298083	+	0	NA	Intergenic	Intergenic	-69821	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
chipseq_peak_11208	chr6	14063848	14064267	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	192488	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
chipseq_peak_4496	chr14	86764025	86765940	+	0	NA	intron (NM_019670, intron 27 of 27)	(GGA)n|Simple_repeat|Simple_repeat	376132	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
chipseq_peak_7819	chr2	63058031	63058945	+	0	NA	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	125799	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
chipseq_peak_11130	chr6	3861095	3861444	+	0	NA	Intergenic	Intergenic	-96556	NM_007588	12311	Mm.4642	NM_007588	ENSMUSG00000023964	Calcr	Clr	calcitonin receptor	protein-coding
chipseq_peak_11037	chr5	132268218	132268728	+	0	NA	intron (NM_177047, intron 1 of 18)	intron (NM_177047, intron 1 of 18)	273870	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
chipseq_peak_3067	chr12	64640906	64641433	+	0	NA	Intergenic	Intergenic	-166271	NM_001163271	623046	Mm.189552	NM_001163271	ENSMUSG00000043060	Fscb	EG623046	fibrous sheath CABYR binding protein	protein-coding
chipseq_peak_12236	chr7	75370778	75371222	+	0	NA	Intergenic	Intergenic	-61738	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding
chipseq_peak_3878	chr13	91370897	91371567	+	0	NA	non-coding (NR_045161, exon 3 of 3)	non-coding (NR_045161, exon 3 of 3)	16853	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA
chipseq_peak_7767	chr2	58467803	58468243	+	0	NA	intron (NM_001110205, intron 7 of 10)	intron (NM_001110205, intron 7 of 10)	98805	NM_007394	11477	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding
chipseq_peak_13464	chr9	40438458	40440859	+	0	NA	intron (NM_172768, intron 1 of 19)	intron (NM_172768, intron 1 of 19)	16106	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding
chipseq_peak_13766	chr9	93771622	93772302	+	0	NA	Intergenic	Intergenic	766119	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
chipseq_peak_12670	chr8	17465022	17466488	+	0	NA	intron (NM_053171, intron 1 of 69)	MER130|Unknown|Unknown	69630	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
chipseq_peak_8786	chr3	60662642	60663115	+	0	NA	Intergenic	Intergenic	161699	NM_001310514	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding
chipseq_peak_2402	chr11	68693618	68694279	+	0	NA	intron (NM_175260, intron 1 of 40)	intron (NM_175260, intron 1 of 40)	2033	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding
chipseq_peak_2200	chr11	25696722	25698706	+	0	NA	intron (NR_027973, intron 2 of 5)	G-rich|Low_complexity|Low_complexity	371607	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_11313	chr6	28184632	28185157	+	0	NA	Intergenic	Intergenic	-50525	NM_008174	14823	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding
chipseq_peak_12692	chr8	28298693	28299665	+	0	NA	Intergenic	Intergenic	-214326	NR_033590	666422	Mm.484413	NR_033590		Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo
chipseq_peak_527	chr1	75869512	75870295	+	0	NA	Intergenic	L1M3|LINE|L1	323637	NM_009208	20536	Mm.5053	NM_009208		Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding
chipseq_peak_1164	chr1	187298898	187299665	+	0	NA	intron (NM_026367, intron 5 of 9)	intron (NM_026367, intron 5 of 9)	83770	NM_026367	67769	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding
chipseq_peak_2497	chr11	89896799	89897337	+	0	NA	Intergenic	Intergenic	105826	NM_008796	18559	Mm.5062	NM_008796		Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding
chipseq_peak_7788	chr2	61118564	61118972	+	0	NA	Intergenic	Intergenic	-143617	NR_045335	100038493	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	ENSMUSG00000075325|OTTMUSG00000012844	predicted gene 13582	ncRNA
chipseq_peak_9561	chr4	17380527	17380912	+	0	NA	Intergenic	Intergenic	-472763	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_10510	chr5	54439379	54439918	+	0	NA	Intergenic	Intergenic	89656	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
chipseq_peak_9312	chr3	143100906	143102058	+	0	NA	Intergenic	Intergenic	-141573	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA
chipseq_peak_12803	chr8	44925494	44925936	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-24493	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chipseq_peak_6321	chr17	55488228	55488877	+	0	NA	intron (NM_172829, intron 2 of 4)	Charlie1a|DNA|hAT-Charlie	42835	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding
chipseq_peak_4454	chr14	79824700	79825274	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	44189	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA
chipseq_peak_2240	chr11	32983855	32984195	+	0	NA	Intergenic	L1ME3F|LINE|L1	-159431	NM_027050	69351	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding
chipseq_peak_1648	chr10	67167275	67168147	+	0	NA	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-18039	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding
chipseq_peak_13858	chr9	106509263	106509758	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-5063	NM_029300	75470	Mm.63799	NM_029300	ENSMUSG00000066382	Iqcf5	1700007L12Rik	IQ motif containing F5	protein-coding
chipseq_peak_7270	chr19	46998219	46998647	+	0	NA	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-16265	NM_146100	226180	Mm.276251	NM_146100		Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding
chipseq_peak_2744	chr12	25883637	25885051	+	0	NA	Intergenic	Intergenic	326161	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
chipseq_peak_8393	chr2	170638334	170640082	+	0	NA	Intergenic	Intergenic	-37191	NR_027825	67637	Mm.158163	NM_026287	ENSMUSG00000043583	4930470P17Rik	-	RIKEN cDNA 4930470P17 gene	ncRNA
chipseq_peak_6	chr1	6288268	6290382	+	0	NA	Intergenic	Intergenic	-70006	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding
chipseq_peak_8599	chr3	36202500	36203200	+	0	NA	intron (NM_198192, intron 1 of 5)	MLT1D|LTR|ERVL-MaLR	19425	NM_198192	229214	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding
chipseq_peak_4741	chr14	120813857	120814471	+	0	NA	Intergenic	Intergenic	-97030	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding
chipseq_peak_8933	chr3	80483873	80484659	+	0	NA	Intergenic	Intergenic	318525	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_4932	chr15	27055692	27056075	+	0	NA	Intergenic	Intergenic	-160319	NM_176959	448987	Mm.253378	NM_176959		Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding
chipseq_peak_12323	chr7	91210310	91211214	+	0	NA	intron (NM_011807, intron 1 of 22)	B4A|SINE|B4	119976	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_5397	chr15	92863693	92864749	+	0	NA	Intergenic	Intergenic	267112	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
chipseq_peak_2329	chr11	43333522	43333812	+	0	NA	Intergenic	Intergenic	40794	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA
chipseq_peak_3171	chr12	74594982	74595670	+	0	NA	Intergenic	Intergenic	297852	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding
chipseq_peak_10293	chr5	13630658	13631930	+	0	NA	Intergenic	Intergenic	-160325	NM_027650	71026	Mm.158536	NM_027650	ENSMUSG00000067855	Speer3	4933405P08Rik|SPEER-3	spermatogenesis associated glutamate (E)-rich protein 3	protein-coding
chipseq_peak_12995	chr8	73112277	73113526	+	0	NA	intron (NM_010687, intron 4 of 14)	Lx9|LINE|L1	96389	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA
chipseq_peak_13771	chr9	94210419	94210934	+	0	NA	Intergenic	Intergenic	327405	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
chipseq_peak_7632	chr2	44453823	44454895	+	0	NA	Intergenic	Intergenic	-389035	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_3952	chr13	99754262	99755263	+	0	NA	Intergenic	Intergenic	145921	NM_001081493	27220	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding
chipseq_peak_1606	chr10	58859552	58860941	+	0	NA	intron (NM_172788, intron 1 of 9)	Lx8b|LINE|L1	46887	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding
chipseq_peak_13878	chr9	110275048	110275492	+	0	NA	Intergenic	PB1D10|SINE|Alu	-6017	NR_105744	102465959		NR_105744	ENSMUSG00000098973	Mir6236	Gm27547|mmu-mir-6236	microRNA 6236	ncRNA
chipseq_peak_7873	chr2	69445782	69446432	+	0	NA	intron (NM_001081088, intron 63 of 78)	intron (NM_001081088, intron 63 of 78)	65645	NM_175512	241452	Mm.211655	NM_175512		Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding
chipseq_peak_2271	chr11	38673517	38674323	+	0	NA	Intergenic	Intergenic	-153875	NR_040295	100502917	Mm.61144	NR_040295		Gm12130	OTTMUSG00000005424	predicted gene 12130	ncRNA
chipseq_peak_10976	chr5	123969862	123971316	+	0	NA	TTS (NM_001134767)	TTS (NM_001134767)	-3039	NM_145070	29816	Mm.149954	NM_145070		Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding
chipseq_peak_1742	chr10	84962952	84964191	+	0	NA	intron (NM_183172, intron 4 of 9)	intron (NM_183172, intron 4 of 9)	45958	NM_001013441	237422	Mm.18936	NM_183172		Ric8b	BC051080|Ric-8|Ric-8b	resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	protein-coding
chipseq_peak_1930	chr10	106456876	106457427	+	0	NA	Intergenic	Intergenic	-13159	NM_001205341	327814	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding
chipseq_peak_11494	chr6	51656047	51657374	+	0	NA	Intergenic	Intergenic	112187	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding
chipseq_peak_2386	chr11	66046579	66047214	+	0	NA	intron (NM_001099633, intron 28 of 68)	intron (NM_001099633, intron 28 of 68)	121655	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding
chipseq_peak_12564	chr7	137244703	137245289	+	0	NA	intron (NM_001113414, intron 6 of 15)	intron (NM_001113414, intron 6 of 15)	10313	NR_045885	100038555	Mm.444788	NR_045885		Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA
chipseq_peak_10472	chr5	47299465	47299985	+	0	NA	Intergenic	Intergenic	-683430	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
chipseq_peak_9111	chr3	117121941	117122661	+	0	NA	Intergenic	Intergenic	-44536	NR_038029	433646	Mm.158997	NR_038029	ENSMUSG00000028009	1700061I17Rik	-	RIKEN cDNA 1700061I17 gene	ncRNA
chipseq_peak_8402	chr2	170821656	170822860	+	0	NA	intron (NM_001163686, intron 2 of 7)	L1M3|LINE|L1	90451	NM_029761	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding
chipseq_peak_3443	chr13	16379356	16379985	+	0	NA	Intergenic	Intergenic	365195	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_2702	chr12	12716031	12717057	+	0	NA	Intergenic	B4|SINE|B4	225292	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	protein-coding
chipseq_peak_2022	chr10	117014131	117014748	+	0	NA	intron (NM_001007583, intron 9 of 9)	intron (NM_001007583, intron 9 of 9)	28125	NM_001007583	382427	Mm.339322	NM_001007583	ENSMUSG00000020169	Best3	Vmd2l3|mBest4	bestrophin 3	protein-coding
chipseq_peak_577	chr1	83296324	83298160	+	0	NA	intron (NM_172430, intron 3 of 10)	intron (NM_172430, intron 3 of 10)	110958	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding
chipseq_peak_2260	chr11	37150232	37155448	+	0	NA	Intergenic	Intergenic	-208599	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
chipseq_peak_11702	chr6	98147681	98148994	+	0	NA	Intergenic	Intergenic	156554	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding
chipseq_peak_7028	chr18	79110328	79110724	+	0	NA	Intergenic	Intergenic	-1135	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
chipseq_peak_54	chr1	16996629	16997122	+	0	NA	3' UTR (NM_020604, exon 5 of 5)	3' UTR (NM_020604, exon 5 of 5)	101014	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding
chipseq_peak_7172	chr19	26747923	26750216	+	0	NA	intron (NM_026003, intron 1 of 8)	intron (NM_026003, intron 1 of 8)	666	NM_026003	67155	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
chipseq_peak_1092	chr1	177035345	177036802	+	0	NA	intron (NM_011785, intron 11 of 12)	intron (NM_011785, intron 11 of 12)	-199940	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_830	chr1	137486693	137487036	+	0	NA	Intergenic	L1M4|LINE|L1	-479591	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA
chipseq_peak_5632	chr16	39726603	39727070	+	0	NA	Intergenic	Intergenic	824491	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_14065	chrX	112348367	112348712	+	0	NA	intron (NM_026565, intron 3 of 8)	intron (NM_026565, intron 3 of 8)	37187	NM_001313734	68117	Mm.161014	NM_026565	ENSMUSG00000025525	Apool	6720473G16Rik|9430083G14Rik|E130106L15Rik	apolipoprotein O-like	protein-coding
chipseq_peak_1115	chr1	177452406	177453312	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	7038	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_8477	chr3	17582548	17583505	+	0	NA	Intergenic	Intergenic	-206895	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	2610100L16Rik	100040120|Gm2612	RIKEN cDNA 2610100L16 gene	ncRNA
chipseq_peak_7230	chr19	35528788	35529775	+	0	NA	Intergenic	Intergenic	528079	NM_008315	15566	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding
chipseq_peak_228	chr1	38429076	38429557	+	0	NA	intron (NM_001290814, intron 4 of 21)	intron (NM_001290814, intron 4 of 21)	197928	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding
chipseq_peak_12797	chr8	44520962	44521511	+	0	NA	Intergenic	Intergenic	-428972	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chipseq_peak_8377	chr2	166024655	166025018	+	0	NA	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	32199	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding
chipseq_peak_10756	chr5	84654933	84656015	+	0	NA	Intergenic	Intergenic	-238092	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_6270	chr17	49124246	49125177	+	0	NA	Intergenic	L1MEc|LINE|L1	-11178	NR_038145	69311	Mm.46140	NR_038141	ENSMUSG00000101012	1700008K24Rik	-	RIKEN cDNA 1700008K24 gene	ncRNA
chipseq_peak_8181	chr2	132190645	132191106	+	0	NA	Intergenic	Intergenic	-45767	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding
chipseq_peak_1362	chr10	26000976	26001241	+	0	NA	intron (NM_029881, intron 1 of 1)	intron (NM_029881, intron 1 of 1)	-77147	NR_028030	100040851	Mm.478630	NR_028030	ENSMUSG00000039098	Gm9767	ENSMUSG00000039098	predicted gene 9767	ncRNA
chipseq_peak_8784	chr3	60620028	60621325	+	0	NA	intron (NM_001310514, intron 7 of 8)	intron (NM_001310514, intron 7 of 8)	119497	NM_001310514	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding
chipseq_peak_9137	chr3	118074062	118074389	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-205289	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_3065	chr12	63803882	63806290	+	0	NA	Intergenic	Intergenic	669812	NM_001163271	623046	Mm.189552	NM_001163271	ENSMUSG00000043060	Fscb	EG623046	fibrous sheath CABYR binding protein	protein-coding
chipseq_peak_7598	chr2	43712223	43713007	+	0	NA	Intergenic	Intergenic	-36209	NM_153820	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_8050	chr2	106715981	106716330	+	0	NA	intron (NM_029837, intron 2 of 6)	UCON20|Unknown|Unknown	20554	NM_029837	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding
chipseq_peak_13296	chr9	9736981	9737885	+	0	NA	intron (NM_001170787, intron 18 of 24)	intron (NM_001170787, intron 18 of 24)	-156998	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_4723	chr14	118868059	118868804	+	0	NA	intron (NM_001160097, intron 3 of 3)	intron (NM_001160097, intron 3 of 3)	13481	NM_001160099	58187	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding
chipseq_peak_6730	chr18	33162297	33162644	+	0	NA	intron (NM_009793, intron 7 of 10)	MLT1A0|LTR|ERVL-MaLR	51346	NM_133774	170459	Mm.127058	NM_133774		Stard4	4632419C16Rik|9030213J02Rik|AA517649|AW324468	StAR-related lipid transfer (START) domain containing 4	protein-coding
chipseq_peak_4802	chr15	12680712	12681276	+	0	NA	Intergenic	Intergenic	-88438	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding
chipseq_peak_8810	chr3	65488866	65489355	+	0	NA	Intergenic	Intergenic	-39337	NM_178892	99929	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding
chipseq_peak_11535	chr6	56913105	56913473	+	0	NA	intron (NM_026004, intron 1 of 8)	intron (NM_026004, intron 1 of 8)	10643	NM_026004	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding
chipseq_peak_10183	chr4	128440144	128441785	+	0	NA	intron (NM_001281955, intron 25 of 70)	intron (NM_001281955, intron 25 of 70)	169134	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding
chipseq_peak_6534	chr17	91000925	91001419	+	0	NA	intron (NM_020252, intron 2 of 22)	intron (NM_020252, intron 2 of 22)	91630	NM_020252	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
chipseq_peak_455	chr1	64711671	64712688	+	0	NA	intron (NM_001097644, intron 5 of 9)	Charlie1a|DNA|hAT-Charlie	20834	NM_001097644	227210	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding
chipseq_peak_8546	chr3	26846998	26847427	+	0	NA	intron (NM_029150, intron 5 of 10)	intron (NM_029150, intron 5 of 10)	209581	NM_029150	70862	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding
chipseq_peak_10794	chr5	90026725	90027466	+	0	NA	Intergenic	Intergenic	-143761	NM_177872	330119	Mm.133062	NM_177872		Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding
chipseq_peak_5126	chr15	52560320	52560708	+	0	NA	Intergenic	Intergenic	-151931	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
chipseq_peak_13201	chr8	113051900	113052591	+	0	NA	Intergenic	L2|LINE|L2	-15017	NR_033584	791378	Mm.350576	NR_033584		Gm10280	ENSMUSG00000069883	predicted gene 10280	ncRNA
chipseq_peak_1772	chr10	90308179	90308537	+	0	NA	intron (NM_001128086, intron 11 of 24)	intron (NM_001128086, intron 11 of 24)	-267369	NM_001177397	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_7503	chr2	22024436	22024792	+	0	NA	Intergenic	Intergenic	-202889	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding
chipseq_peak_11453	chr6	46496725	46497262	+	0	NA	intron (NM_001004357, intron 13 of 23)	intron (NM_001004357, intron 13 of 23)	-747403	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_13276	chr9	4974881	4975193	+	0	NA	Intergenic	Intergenic	-178803	NM_001113181	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding
chipseq_peak_4064	chr13	110754195	110754949	+	0	NA	Intergenic	Intergenic	-148927	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA
chipseq_peak_10827	chr5	98138750	98140014	+	0	NA	Intergenic	Intergenic	-41487	NM_029947	77630	Mm.332511	NM_029947		Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding
chipseq_peak_7421	chr2	8028770	8029539	+	0	NA	Intergenic	Intergenic	-632956	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_9224	chr3	127852402	127854001	+	0	NA	Intergenic	Intergenic	-15709	NM_145964	211556	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding
chipseq_peak_359	chr1	55890178	55891957	+	0	NA	Intergenic	Intergenic	-40174	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
chipseq_peak_10306	chr5	15822987	15823441	+	0	NA	Intergenic	Intergenic	60552	NR_045974	75058	Mm.183467	NR_045974	ENSMUSG00000105185	4930519H02Rik	-	RIKEN cDNA 4930519H02 gene	ncRNA
chipseq_peak_11271	chr6	22223191	22223566	+	0	NA	intron (NM_001081351, intron 17 of 21)	intron (NM_001081351, intron 17 of 21)	-64849	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding
chipseq_peak_11693	chr6	97698842	97699875	+	0	NA	Intergenic	Intergenic	-81701	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013	FERM domain containing 4B	protein-coding
chipseq_peak_5629	chr16	39600515	39601360	+	0	NA	Intergenic	Intergenic	698592	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_11381	chr6	36834922	36836274	+	0	NA	Intergenic	Intergenic	-24237	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_11950	chr6	139154868	139155314	+	0	NA	Intergenic	L1MD3|LINE|L1	167485	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA
chipseq_peak_7068	chr19	6127542	6128366	+	0	NA	intron (NM_026912, intron 1 of 7)	intron (NM_026912, intron 1 of 7)	261	NM_026912	69024	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding
chipseq_peak_7867	chr2	67818083	67818542	+	0	NA	Intergenic	L3|LINE|CR1	37269	NR_105752	102466627		NR_105752	ENSMUSG00000098734	Mir6335	Gm27836|mmu-mir-6335	microRNA 6335	ncRNA
chipseq_peak_12902	chr8	57428438	57429529	+	0	NA	Intergenic	Intergenic	-26940	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding
chipseq_peak_9683	chr4	31383130	31383640	+	0	NA	Intergenic	LTR50|LTR|ERVL	-580722	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_10664	chr5	72818141	72818741	+	0	NA	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	50007	NM_001113461	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding
chipseq_peak_12403	chr7	97722550	97722858	+	0	NA	Intergenic	Intergenic	15543	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding
chipseq_peak_791	chr1	130130570	130131680	+	0	NA	intron (NM_172485, intron 17 of 27)	intron (NM_172485, intron 17 of 27)	291874	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding
chipseq_peak_2939	chr12	49481218	49482908	+	0	NA	Intergenic	Intergenic	-1201	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_166	chr1	30790174	30790643	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	72848	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
chipseq_peak_6733	chr18	33366478	33367180	+	0	NA	Intergenic	Intergenic	96805	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
chipseq_peak_2972	chr12	50989544	50989926	+	0	NA	Intergenic	Intergenic	-15421	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
chipseq_peak_2428	chr11	77180882	77181311	+	0	NA	intron (NM_176965, intron 1 of 17)	intron (NM_176965, intron 1 of 17)	7872	NM_176965	319634	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding
chipseq_peak_3691	chr13	70057752	70058127	+	0	NA	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-29591	NR_045965	74280	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA
chipseq_peak_7363	chr2	4601459	4601908	+	0	NA	intron (NM_001177843, intron 19 of 23)	intron (NM_001177843, intron 19 of 23)	41929	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding
chipseq_peak_915	chr1	148993551	148993938	+	0	NA	Intergenic	Intergenic	928695	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
chipseq_peak_12298	chr7	89418453	89419317	+	0	NA	Intergenic	Intergenic	-7421	NR_102276	101521	Mm.26902	NR_102276		AI314278	-	expressed sequence AI314278	ncRNA
chipseq_peak_2751	chr12	26191598	26192091	+	0	NA	intron (NR_131149, intron 2 of 4)	intron (NR_131149, intron 2 of 4)	18661	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
chipseq_peak_6886	chr18	57245303	57245810	+	0	NA	intron (NM_001001979, intron 7 of 24)	intron (NM_001001979, intron 7 of 24)	-109177	NM_028447	73137	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding
chipseq_peak_7607	chr2	43844459	43845889	+	0	NA	intron (NM_001301831, intron 4 of 14)	intron (NM_001301831, intron 4 of 14)	96350	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_10659	chr5	72689678	72690912	+	0	NA	Intergenic	Intergenic	42499	NM_001081205	70701	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding
chipseq_peak_2390	chr11	67821499	67822292	+	0	NA	Intergenic	Intergenic	23624	NM_001013013	68460	Mm.22167	NM_001013013	ENSMUSG00000033044	Dhrs7c	1110001P11Rik|AI120487|SRP-35	dehydrogenase/reductase (SDR family) member 7C	protein-coding
chipseq_peak_13663	chr9	68330196	68330923	+	0	NA	Intergenic	HAL1ME|LINE|L1	189641	NR_040737	74951	Mm.60678	NR_040737		4930502A04Rik	-	RIKEN cDNA 4930502A04 gene	ncRNA
chipseq_peak_7376	chr2	6594717	6595104	+	0	NA	intron (NM_001310447, intron 7 of 11)	intron (NM_001310447, intron 7 of 11)	126752	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_12982	chr8	68210234	68210468	+	0	NA	Intergenic	Intergenic	-66177	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding
chipseq_peak_6911	chr18	64210576	64212265	+	0	NA	intron (NR_045366, intron 2 of 5)	intron (NR_045366, intron 2 of 5)	-42939	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding
chipseq_peak_1051	chr1	171501747	171503553	+	0	NA	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	-828	NM_019484	56009	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding
chipseq_peak_6320	chr17	55406019	55406623	+	0	NA	Intergenic	Intergenic	-39396	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding
chipseq_peak_11987	chr6	144181111	144181449	+	0	NA	intron (NM_001113559, intron 1 of 13)	intron (NM_001113559, intron 1 of 13)	28288	NM_011444	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
chipseq_peak_12246	chr7	76524250	76524899	+	0	NA	intron (NM_001199224, intron 17 of 22)	intron (NM_001199224, intron 17 of 22)	294687	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_10001	chr4	86011425	86012063	+	0	NA	Intergenic	Intergenic	-42171	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding
chipseq_peak_185	chr1	32488061	32488569	+	0	NA	intron (NM_133235, intron 6 of 8)	intron (NM_133235, intron 6 of 8)	32684	NM_001199956	408192	Mm.485769	NM_001199956		Gm9839	ENSMUSG00000049830|Senp15	predicted gene 9839	protein-coding
chipseq_peak_9209	chr3	124712185	124712545	+	0	NA	Intergenic	Intergenic	-131274	NR_015460	384775	Mm.489851	NR_015460	ENSMUSG00000039174	1700003H04Rik	4930538K10Rik|4933400D22Rik	RIKEN cDNA 1700003H04 gene	ncRNA
chipseq_peak_6290	chr17	51111257	51111584	+	0	NA	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	47958	NM_001285993	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding
chipseq_peak_12568	chr7	138932873	138933233	+	0	NA	Intergenic	L1M5|LINE|L1	-7677	NM_028708	74004	Mm.334298	NM_028708		Jakmip3	6330417G02Rik|AI593226|mKIAA4091	janus kinase and microtubule interacting protein 3	protein-coding
chipseq_peak_7835	chr2	65685055	65685647	+	0	NA	intron (NM_001099298, intron 6 of 25)	intron (NM_001099298, intron 6 of 25)	14906	NM_001099298	110876	Mm.220329	NM_001099298	ENSMUSG00000075318	Scn2a1	6430408L10|A230052E19Rik|Nav1.2|Scn2a	sodium channel, voltage-gated, type II, alpha 1	protein-coding
chipseq_peak_6149	chr17	3560450	3560835	+	0	NA	TTS (NR_045303)	TTS (NR_045303)	2818	NR_045303	68230	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA
chipseq_peak_2999	chr12	53692324	53693074	+	0	NA	intron (NM_013780, intron 4 of 11)	intron (NM_013780, intron 4 of 11)	444022	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding
chipseq_peak_3077	chr12	65929931	65932135	+	0	NA	Intergenic	Intergenic	353368	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding
chipseq_peak_3008	chr12	56946290	56946806	+	0	NA	intron (NM_172577, intron 1 of 9)	intron (NM_172577, intron 1 of 9)	214095	NM_001167976	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding
chipseq_peak_10998	chr5	128113067	128113748	+	0	NA	intron (NM_172885, intron 3 of 8)	intron (NM_172885, intron 3 of 8)	319670	NM_172885	243274	Mm.447698	NM_172885		Tmem132d	C630028F04Rik	transmembrane protein 132D	protein-coding
chipseq_peak_2467	chr11	85512631	85513000	+	0	NA	intron (NM_001166642, intron 16 of 24)	intron (NM_001166642, intron 16 of 24)	159651	NM_001166642	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding
chipseq_peak_12545	chr7	133003441	133003740	+	0	NA	intron (NM_009980, intron 3 of 10)	B3|SINE|B2	11657	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding
chipseq_peak_12502	chr7	123283897	123284237	+	0	NA	intron (NM_001316713, intron 18 of 19)	intron (NM_001316713, intron 18 of 19)	69201	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding
chipseq_peak_6700	chr18	30139794	30141607	+	0	NA	Intergenic	Intergenic	-132196	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_5818	chr16	61545615	61546710	+	0	NA	Intergenic	Intergenic	-940631	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding
chipseq_peak_10040	chr4	92931268	92931666	+	0	NA	Intergenic	Intergenic	404044	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding
chipseq_peak_5400	chr15	93536140	93536647	+	0	NA	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	59498	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle homolog 1 (Drosophila)	protein-coding
chipseq_peak_12073	chr7	40825150	40825681	+	0	NA	Intergenic	Intergenic	72909	NR_040329	320210	Mm.126237	NR_040329	ENSMUSG00000100600	A230077H06Rik	-	RIKEN cDNA A230077H06 gene	ncRNA
chipseq_peak_3880	chr13	91393807	91394661	+	0	NA	Intergenic	Intergenic	-6149	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA
chipseq_peak_5542	chr16	24982600	24983235	+	0	NA	3' UTR (NM_178665, exon 13 of 13)	3' UTR (NM_178665, exon 13 of 13)	-76722	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA
chipseq_peak_7075	chr19	12011991	12012828	+	0	NA	Intergenic	Intergenic	24331	NM_146680	258675	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding
chipseq_peak_9670	chr4	30809756	30810474	+	0	NA	intron (NR_040655, intron 4 of 6)	intron (NR_040655, intron 4 of 6)	145519	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
chipseq_peak_2262	chr11	37463498	37464542	+	0	NA	Intergenic	Intergenic	-194969	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	OTTMUSG00000005422	predicted gene 12128	ncRNA
chipseq_peak_5221	chr15	64128383	64129695	+	0	NA	intron (NM_001276462, intron 15 of 27)	intron (NM_001276462, intron 15 of 27)	-68591	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding
chipseq_peak_594	chr1	88718415	88719802	+	0	NA	Intergenic	MIR|SINE|MIR	-16917	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding
chipseq_peak_6963	chr18	68662451	68663192	+	0	NA	Intergenic	Intergenic	-76579	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA
chipseq_peak_13377	chr9	27491557	27491821	+	0	NA	Intergenic	L1_Mur2|LINE|L1	94477	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding
chipseq_peak_2817	chr12	33106740	33107290	+	0	NA	Intergenic	Intergenic	-14140	NM_001024478	68764	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding
chipseq_peak_10401	chr5	38061925	38065096	+	0	NA	intron (NM_001289536, intron 1 of 9)	intron (NM_001289536, intron 1 of 9)	24280	NM_026959	71116	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding
chipseq_peak_3784	chr13	82970170	82972494	+	0	NA	Intergenic	Intergenic	-272999	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_12513	chr7	127260607	127261153	+	0	NA	promoter-TSS (NM_023203)	promoter-TSS (NM_023203)	-213	NM_023203	66422	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding
chipseq_peak_3318	chr12	100187059	100187934	+	0	NA	promoter-TSS (NR_045282)	promoter-TSS (NR_045282)	-472	NR_045282	100038378	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	ENSMUSG00000072884	predicted gene 10433	ncRNA
chipseq_peak_6463	chr17	81778234	81779278	+	0	NA	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-40369	NM_001112798	20541	Mm.265834	NM_011406		Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
chipseq_peak_2256	chr11	36985925	36986224	+	0	NA	Intergenic	Intergenic	-41833	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
chipseq_peak_12855	chr8	53203713	53204623	+	0	NA	Intergenic	Intergenic	-307534	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding
chipseq_peak_1460	chr10	37342649	37342981	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-203889	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
chipseq_peak_1210	chr1	193999174	193999886	+	0	NA	Intergenic	Intergenic	223229	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_11134	chr6	5408487	5409723	+	0	NA	intron (NM_023048, intron 3 of 5)	intron (NM_023048, intron 3 of 5)	25719	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding
chipseq_peak_10459	chr5	45195753	45197300	+	0	NA	intron (NR_131933, intron 4 of 5)	MIRc|SINE|MIR	227874	NR_131933	52401	Mm.33854	NR_131933		D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA
chipseq_peak_7931	chr2	78784805	78785078	+	0	NA	Intergenic	Intergenic	-84106	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chipseq_peak_10331	chr5	18001796	18003124	+	0	NA	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	39890	NM_001081143	242851	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding
chipseq_peak_5177	chr15	59414980	59415592	+	0	NA	intron (NM_026746, intron 2 of 6)	(T)n|Simple_repeat|Simple_repeat	41088	NM_026746	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	non-SMC element 2 homolog (MMS21, S. cerevisiae)	protein-coding
chipseq_peak_5101	chr15	50261074	50261743	+	0	NA	Intergenic	Intergenic	627641	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_7818	chr2	63021353	63022376	+	0	NA	intron (NM_133207, intron 2 of 15)	B4|SINE|B4	162423	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
chipseq_peak_4618	chr14	105718531	105719650	+	0	NA	Intergenic	Intergenic	-95320	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
chipseq_peak_4344	chr14	63153702	63154437	+	0	NA	intron (NM_010191, intron 7 of 9)	intron (NM_010191, intron 7 of 9)	25509	NM_010191	14137	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding
chipseq_peak_7140	chr19	22731127	22732634	+	0	NA	intron (NM_001035239, intron 5 of 24)	intron (NM_001035239, intron 5 of 24)	-18725	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA
chipseq_peak_5187	chr15	60630571	60631462	+	0	NA	Intergenic	Intergenic	-191949	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA
chipseq_peak_12580	chr8	6043435	6044467	+	0	NA	Intergenic	Intergenic	-938719	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_10585	chr5	63503001	63504126	+	0	NA	Intergenic	Intergenic	-145540	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding
chipseq_peak_12826	chr8	48445565	48446253	+	0	NA	intron (NM_011857, intron 2 of 28)	intron (NM_011857, intron 2 of 28)	228781	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_6304	chr17	52879999	52880644	+	0	NA	intron (NM_001031811, intron 8 of 15)	intron (NM_001031811, intron 8 of 15)	277612	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
chipseq_peak_6995	chr18	70920630	70921047	+	0	NA	Intergenic	Intergenic	352546	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding
chipseq_peak_3934	chr13	97917383	97918692	+	0	NA	intron (NM_012026, intron 35 of 35)	intron (NM_012026, intron 35 of 35)	288128	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
chipseq_peak_4936	chr15	27487914	27488338	+	0	NA	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	21449	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding
chipseq_peak_2459	chr11	81634636	81635225	+	0	NA	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	-61391	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding
chipseq_peak_9618	chr4	24254011	24254375	+	0	NA	Intergenic	Intergenic	-242269	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_11341	chr6	33066392	33067355	+	0	NA	Intergenic	Intergenic	-6721	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
chipseq_peak_11980	chr6	143698897	143699317	+	0	NA	Intergenic	Intergenic	-47819	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA
chipseq_peak_6118	chr16	94472396	94472864	+	0	NA	Intergenic	Intergenic	53999	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding
chipseq_peak_13206	chr8	113317288	113317676	+	0	NA	Intergenic	Intergenic	-199800	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA
chipseq_peak_8236	chr2	139376350	139377329	+	0	NA	Intergenic	LTR81A|LTR|Gypsy	-117081	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding
chipseq_peak_165	chr1	30755370	30755999	+	0	NA	Intergenic	Intergenic	107572	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
chipseq_peak_8475	chr3	16937550	16940166	+	0	NA	Intergenic	Intergenic	755675	NR_027375	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding
chipseq_peak_9732	chr4	36635430	36636348	+	0	NA	intron (NM_001166000, intron 1 of 8)	intron (NM_001166000, intron 1 of 8)	9564	NR_030545	100124458		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA
chipseq_peak_8586	chr3	33003709	33004275	+	0	NA	intron (NM_001310460, intron 8 of 15)	intron (NM_001310460, intron 8 of 15)	-18913	NM_001163517	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding
chipseq_peak_6754	chr18	39411489	39412259	+	0	NA	3' UTR (NM_008173, exon 8 of 8)	3' UTR (NM_008173, exon 8 of 8)	75371	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding
chipseq_peak_2961	chr12	50295107	50296332	+	0	NA	Intergenic	Intergenic	353504	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_12164	chr7	61878130	61878832	+	0	NA	promoter-TSS (NR_029772)	promoter-TSS (NR_029772)	-617	NR_029772	723931		NR_029772	ENSMUSG00000065568	Mir344	Mirn344|mir-344-1|mmu-mir-344	microRNA 344	ncRNA
chipseq_peak_2688	chr12	12220503	12221315	+	0	NA	Intergenic	Intergenic	-41230	NM_029758	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding
chipseq_peak_2536	chr11	101672809	101673377	+	0	NA	Intergenic	Intergenic	7552	NM_025404	80981	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding
chipseq_peak_7561	chr2	38142954	38144968	+	0	NA	intron (NM_146122, intron 3 of 21)	intron (NM_146122, intron 3 of 21)	143423	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding
chipseq_peak_4807	chr15	13050336	13050871	+	0	NA	intron (NM_007666, intron 7 of 11)	intron (NM_007666, intron 7 of 11)	123072	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_6465	chr17	82137361	82139979	+	0	NA	Intergenic	Intergenic	-400283	NM_001112798	20541	Mm.265834	NM_011406		Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
chipseq_peak_2420	chr11	75486380	75486969	+	0	NA	promoter-TSS (NM_138659)	promoter-TSS (NM_138659)	-103	NM_138659	192159	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding
chipseq_peak_10930	chr5	115055548	115056025	+	0	NA	intron (NM_029012, intron 1 of 10)	intron (NM_029012, intron 1 of 10)	44262	NM_029012	74585	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding
chipseq_peak_12636	chr8	10850909	10851575	+	0	NA	Intergenic	Intergenic	31212	NR_040705	320014	Mm.403203	NR_040705		B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA
chipseq_peak_11294	chr6	24516242	24516504	+	0	NA	Intergenic	Intergenic	-1306	NM_172535	214704	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding
chipseq_peak_13425	chr9	31112541	31113054	+	0	NA	intron (NM_011176, intron 1 of 18)	HAL1|LINE|L1	19002	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding
chipseq_peak_5263	chr15	66813474	66814355	+	0	NA	intron (NM_009192, intron 1 of 8)	MIRb|SINE|MIR	17915	NM_009192	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding
chipseq_peak_3778	chr13	82780681	82781412	+	0	NA	Intergenic	Intergenic	-82713	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_3369	chr12	119506600	119507328	+	0	NA	Intergenic	Intergenic	63554	NM_001163136	238455	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding
chipseq_peak_7122	chr19	20493846	20494196	+	0	NA	intron (NR_015502, intron 2 of 3)	MTE-int|LTR|ERVL-MaLR	1306	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA
chipseq_peak_6384	chr17	68422702	68423385	+	0	NA	intron (NM_177278, intron 4 of 20)	intron (NM_177278, intron 4 of 20)	149246	NM_177278	320858	Mm.137356	NM_177278		L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding
chipseq_peak_11154	chr6	8624714	8625196	+	0	NA	Intergenic	L1ME1|LINE|L1	104897	NM_001286729	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding
chipseq_peak_1495	chr10	41315699	41316335	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-12776	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 homolog (S. cerevisiae)	protein-coding
chipseq_peak_3745	chr13	80799176	80799665	+	0	NA	Intergenic	Intergenic	-84002	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding
chipseq_peak_4024	chr13	108524972	108525320	+	0	NA	Intergenic	Intergenic	-129031	NM_011056	238871	Mm.434429	NM_011056		Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding
chipseq_peak_8987	chr3	85133574	85133944	+	0	NA	Intergenic	Intergenic	-168179	NM_001040461	654362	Mm.466598	NM_001040461		Dear1	Dear|Despr	dual endothelin 1/angiotensin II receptor 1	protein-coding
chipseq_peak_5407	chr15	94479738	94480255	+	0	NA	Intergenic	Intergenic	63511	NM_172437	78895	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7 homolog (S. cerevisiae)-like	protein-coding
chipseq_peak_10043	chr4	93266677	93268244	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	68051	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding
chipseq_peak_8519	chr3	21626019	21626447	+	0	NA	Intergenic	Intergenic	-450419	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
chipseq_peak_11621	chr6	79620035	79620473	+	0	NA	Intergenic	L1MD|LINE|L1	-197777	NM_001190732	100463512	Mm.461086	NM_001190732		Gm20594	Mtrnr2l	predicted gene, 20594	protein-coding
chipseq_peak_8204	chr2	135108711	135110866	+	0	NA	intron (NM_019677, intron 3 of 32)	RSINE1|SINE|B4	105828	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA
chipseq_peak_5545	chr16	25029429	25029876	+	0	NA	Intergenic	Intergenic	-29987	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA
chipseq_peak_13015	chr8	77670885	77671337	+	0	NA	intron (NM_010332, intron 5 of 7)	intron (NM_010332, intron 5 of 7)	46939	NR_045467	67357	Mm.71129	NR_045467	ENSMUSG00000086781	1700092C02Rik	-	RIKEN cDNA 1700092C02 gene	ncRNA
chipseq_peak_6083	chr16	85887611	85888625	+	0	NA	intron (NM_011782, intron 1 of 7)	intron (NM_011782, intron 1 of 7)	13007	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding
chipseq_peak_8441	chr3	8526057	8526516	+	0	NA	intron (NM_025285, intron 1 of 4)	intron (NM_025285, intron 1 of 4)	16759	NM_025285	20257	Mm.29580	NM_025285	ENSMUSG00000027500	Stmn2	AI159727|SCG10|Scgn10|Stmb2	stathmin-like 2	protein-coding
chipseq_peak_4495	chr14	86757079	86757705	+	0	NA	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	383722	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
chipseq_peak_4348	chr14	64201943	64202732	+	0	NA	intron (NM_001253712, intron 5 of 5)	intron (NM_001253712, intron 5 of 5)	98014	NM_028525	73382	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding
chipseq_peak_9766	chr4	47312760	47313186	+	0	NA	3' UTR (NM_009928, exon 40 of 40)	3' UTR (NM_009928, exon 40 of 40)	-40249	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding
chipseq_peak_4559	chr14	94309389	94309931	+	0	NA	Intergenic	Intergenic	-418991	NM_001271798	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_5463	chr16	4592900	4593433	+	0	NA	Intergenic	Intergenic	-1547	NM_031184	83396	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding
chipseq_peak_8391	chr2	170585760	170586480	+	0	NA	intron (NR_027825, intron 1 of 1)	Charlie2b|DNA|hAT-Charlie	15897	NR_027825	67637	Mm.158163	NM_026287	ENSMUSG00000043583	4930470P17Rik	-	RIKEN cDNA 4930470P17 gene	ncRNA
chipseq_peak_6317	chr17	55281287	55281642	+	0	NA	Intergenic	Intergenic	-164253	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding
chipseq_peak_12012	chr6	147727210	147728661	+	0	NA	Intergenic	Intergenic	37694	NR_033636	100039727	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761|OTTMUSG00000026044	RIKEN cDNA 1700049E15 gene	ncRNA
chipseq_peak_11404	chr6	39903666	39904344	+	0	NA	Intergenic	Intergenic	-93069	NM_001010930	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding
chipseq_peak_13780	chr9	96284991	96285363	+	0	NA	intron (NM_178667, intron 5 of 13)	intron (NM_178667, intron 5 of 13)	25929	NM_001184710	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding
chipseq_peak_2984	chr12	51376970	51377778	+	0	NA	promoter-TSS (NM_001306178)	promoter-TSS (NM_001306178)	-139	NM_001306178	76983	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding
chipseq_peak_12398	chr7	97085241	97085696	+	0	NA	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	3717	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding
chipseq_peak_10719	chr5	81364228	81364728	+	0	NA	intron (NM_198702, intron 5 of 27)	intron (NM_198702, intron 5 of 27)	342885	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_7617	chr2	44060638	44061143	+	0	NA	intron (NR_040622, intron 2 of 2)	intron (NR_040622, intron 2 of 2)	4434	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_8677	chr3	49079190	49079681	+	0	NA	Intergenic	Intergenic	-470335	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo
chipseq_peak_5069	chr15	44913368	44914983	+	0	NA	Intergenic	Intergenic	32781	NR_033609	239410	Mm.352401	NR_033609		A930017M01Rik	Gm305	Smg-5 homolog, nonsense mediated mRNA decay factor pseudogene	pseudo
chipseq_peak_9639	chr4	26276109	26276660	+	0	NA	Intergenic	Intergenic	70268	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding
chipseq_peak_4724	chr14	118890236	118890644	+	0	NA	intron (NR_130725, intron 12 of 20)	intron (NR_130725, intron 12 of 20)	32727	NR_130725	66573	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding
chipseq_peak_7855	chr2	66941279	66941818	+	0	NA	Intergenic	Intergenic	-156638	NM_009135	20272	Mm.38127	NM_009135	ENSMUSG00000034810	Scn7a	1110034K09Rik|AI642000|NaG|Nav2|Nav2.3|Nax|Scn6a	sodium channel, voltage-gated, type VII, alpha	protein-coding
chipseq_peak_3283	chr12	94047714	94048485	+	0	NA	Intergenic	Intergenic	120761	NR_106175	102465890		NR_106175	ENSMUSG00000098931	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA
chipseq_peak_12142	chr7	55710316	55711464	+	0	NA	Intergenic	Intergenic	-57294	NM_001310740	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding
chipseq_peak_11764	chr6	103499741	103500596	+	0	NA	Intergenic	Intergenic	-10708	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_2537	chr11	101689601	101690206	+	0	NA	Intergenic	Intergenic	24362	NM_025404	80981	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding
chipseq_peak_14012	chrX	60966625	60966955	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-73360	NM_009237	20675	Mm.35784	NM_009237	ENSMUSG00000045179	Sox3	Sox-3	SRY (sex determining region Y)-box 3	protein-coding
chipseq_peak_13208	chr8	113544969	113545404	+	0	NA	intron (NR_110476, intron 2 of 2)	intron (NR_110476, intron 2 of 2)	27904	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA
chipseq_peak_3717	chr13	76969486	76969811	+	0	NA	intron (NM_030174, intron 17 of 20)	intron (NM_030174, intron 17 of 20)	165820	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding
chipseq_peak_3666	chr13	59211690	59213223	+	0	NA	Intergenic	Intergenic	331995	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding
chipseq_peak_8641	chr3	41692135	41693824	+	0	NA	intron (NM_001081411, intron 9 of 20)	intron (NM_001081411, intron 9 of 20)	49535	NM_001081411	67161	Mm.331001	NM_026008	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik	sodium channel and clathrin linker 1	protein-coding
chipseq_peak_846	chr1	138995633	138995999	+	0	NA	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	18159	NR_108103	78229	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA
chipseq_peak_2844	chr12	36095256	36096037	+	0	NA	intron (NM_025840, intron 10 of 11)	intron (NM_025840, intron 10 of 11)	5267	NR_003649	432649	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo
chipseq_peak_10970	chr5	122558008	122558664	+	0	NA	intron (NM_009879, intron 17 of 18)	intron (NM_009879, intron 17 of 18)	-56111	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding
chipseq_peak_2160	chr11	17526514	17527202	+	0	NA	Intergenic	Intergenic	269240	NM_020558	57316	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding
chipseq_peak_5674	chr16	42337654	42338703	+	0	NA	intron (NM_008083, intron 1 of 2)	intron (NM_008083, intron 1 of 2)	2473	NM_008083	14432	Mm.1222	NM_008083	ENSMUSG00000047261	Gap43	B-50|Basp2|GAP-43	growth associated protein 43	protein-coding
chipseq_peak_12332	chr7	91444085	91444588	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	353550	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_14129	chrX	164281829	164282104	+	0	NA	intron (NM_027153, intron 3 of 9)	(TTA)n|Simple_repeat|Simple_repeat	12535	NM_027153	69656	Mm.293463	NM_027153	ENSMUSG00000031379	Pir	2310042L19Rik|Pirnl	pirin	protein-coding
chipseq_peak_986	chr1	160935535	160935917	+	0	NA	intron (NM_001024952, intron 2 of 19)	B2_Mm2|SINE|B2	29315	NM_001024952	381305	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding
chipseq_peak_5335	chr15	80482684	80483742	+	0	NA	intron (NM_001163189, intron 4 of 5)	intron (NM_001163189, intron 4 of 5)	77257	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding
chipseq_peak_261	chr1	41427627	41430222	+	0	NA	Intergenic	Intergenic	-247672	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_4665	chr14	112028871	112029942	+	0	NA	intron (NR_030150, intron 2 of 3)	AT_rich|Low_complexity|Low_complexity	7976	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
chipseq_peak_2530	chr11	101525985	101526782	+	0	NA	exon (NM_009764, exon 10 of 23)	exon (NM_009764, exon 10 of 23)	25572	NM_009764	12189	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding
chipseq_peak_9811	chr4	53896225	53896932	+	0	NA	Intergenic	Intergenic	70533	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding
chipseq_peak_4186	chr14	21341251	21341758	+	0	NA	intron (NM_134079, intron 7 of 10)	intron (NM_134079, intron 7 of 10)	-158266	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chipseq_peak_2292	chr11	40499498	40500909	+	0	NA	Intergenic	Intergenic	192479	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding
chipseq_peak_13710	chr9	79935687	79936077	+	0	NA	intron (NM_001081243, intron 1 of 5)	intron (NM_001081243, intron 1 of 5)	42000	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding
chipseq_peak_10310	chr5	15940289	15941853	+	0	NA	intron (NM_009784, intron 1 of 37)	intron (NM_009784, intron 1 of 37)	6380	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_8627	chr3	39998609	40000309	+	0	NA	Intergenic	Intergenic	523453	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_13661	chr9	67546473	67546857	+	0	NA	intron (NM_001081242, intron 1 of 57)	intron (NM_001081242, intron 1 of 57)	13038	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding
chipseq_peak_6909	chr18	63529738	63530389	+	0	NA	Intergenic	Intergenic	-142880	NM_001039485	667742	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding
chipseq_peak_2778	chr12	28019594	28019968	+	0	NA	Intergenic	Intergenic	528556	NM_001177964	68511	Mm.310284	NM_001177964	ENSMUSG00000020633	Dcdc2c	1110015M06Rik	doublecortin domain containing 2C	protein-coding
chipseq_peak_11835	chr6	109429705	109430207	+	0	NA	Intergenic	Intergenic	601315	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
chipseq_peak_3595	chr13	46041810	46043315	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-77571	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding
chipseq_peak_6571	chr18	8719146	8719931	+	0	NA	Intergenic	Intergenic	-493318	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled homolog 8 (Drosophila)	protein-coding
chipseq_peak_1709	chr10	72916635	72916909	+	0	NA	Intergenic	Intergenic	169933	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA
chipseq_peak_8196	chr2	134817107	134817749	+	0	NA	intron (NM_019677, intron 2 of 32)	intron (NM_019677, intron 2 of 32)	31264	NM_019677	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding
chipseq_peak_6850	chr18	54545272	54545986	+	0	NA	Intergenic	Intergenic	-66115	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA
chipseq_peak_7151	chr19	23518475	23519006	+	0	NA	Intergenic	Intergenic	-70418	NM_174857	71738	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding
chipseq_peak_1171	chr1	188147145	188148073	+	0	NA	intron (NM_011935, intron 4 of 6)	intron (NM_011935, intron 4 of 6)	-115229	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin	Usher syndrome 2A (autosomal recessive, mild)	protein-coding
chipseq_peak_3417	chr13	9691827	9692203	+	0	NA	intron (NM_001199141, intron 10 of 14)	intron (NM_001199141, intron 10 of 14)	73299	NM_001199141	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding
chipseq_peak_11284	chr6	23739980	23740546	+	0	NA	intron (NM_001252109, intron 1 of 4)	intron (NM_001252109, intron 1 of 4)	-85127	NM_027754	71300	Mm.443309	NM_027754	ENSMUSG00000078179	Rnf148	4933432M07Rik|Greul3	ring finger protein 148	protein-coding
chipseq_peak_12138	chr7	55473538	55474049	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-294391	NM_001310740	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding
chipseq_peak_5071	chr15	44922940	44924351	+	0	NA	Intergenic	Intergenic	42251	NR_033609	239410	Mm.352401	NR_033609		A930017M01Rik	Gm305	Smg-5 homolog, nonsense mediated mRNA decay factor pseudogene	pseudo
chipseq_peak_5036	chr15	43002452	43005069	+	0	NA	Intergenic	Intergenic	167058	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding
chipseq_peak_11151	chr6	8292906	8293349	+	0	NA	intron (NM_001302353, intron 2 of 4)	intron (NM_001302353, intron 2 of 4)	33839	NM_001302354	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding
chipseq_peak_13359	chr9	24584568	24584998	+	0	NA	intron (NM_001166207, intron 18 of 21)	intron (NM_001166207, intron 18 of 21)	-40402	NM_173412	235067	Mm.437189	NM_173412	ENSMUSG00000047995	Cypt4	1700009B20Rik|Ckt1r2	cysteine-rich perinuclear theca 4	protein-coding
chipseq_peak_3368	chr12	119450032	119450598	+	0	NA	exon (NM_001163136, exon 3 of 4)	exon (NM_001163136, exon 3 of 4)	6905	NM_001163136	238455	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding
chipseq_peak_4985	chr15	34685137	34686006	+	0	NA	Intergenic	Intergenic	-6865	NM_145469	223473	Mm.258402	NM_145469	ENSMUSG00000038879	Nipal2	9330161F08Rik|Npal2	NIPA-like domain containing 2	protein-coding
chipseq_peak_11695	chr6	98003157	98003634	+	0	NA	intron (NM_001178049, intron 5 of 9)	intron (NM_001178049, intron 5 of 9)	11612	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding
chipseq_peak_3984	chr13	104393396	104394319	+	0	NA	intron (NM_001081020, intron 12 of 24)	intron (NM_001081020, intron 12 of 24)	105984	NM_001081020	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	5031426K13|A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding
chipseq_peak_6613	chr18	19184691	19185844	+	0	NA	Intergenic	Lx8|LINE|L1	816830	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_7382	chr2	6901279	6902486	+	0	NA	intron (NM_001110229, intron 2 of 14)	intron (NM_001110229, intron 2 of 14)	-16886	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_12504	chr7	124418842	124419278	+	0	NA	Intergenic	Intergenic	289875	NR_045907	73076	Mm.417827	NR_045907	ENSMUSG00000086254	3100003L05Rik	-	RIKEN cDNA 3100003L05 gene	ncRNA
chipseq_peak_11281	chr6	22983762	22984577	+	0	NA	intron (NM_001081306, intron 8 of 29)	Lx2B|LINE|L1	108667	NM_001311064	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding
chipseq_peak_2171	chr11	20987323	20988335	+	0	NA	Intergenic	Intergenic	-103495	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding
chipseq_peak_12535	chr7	131909601	131910176	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	-56572	NM_173410	233919	Mm.208740	NM_173410		Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding
chipseq_peak_2323	chr11	42649919	42652674	+	0	NA	Intergenic	Intergenic	231539	NM_008070	14401	Mm.338723	NM_008070		Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding
chipseq_peak_1178	chr1	188904095	188904503	+	0	NA	intron (NM_021408, intron 60 of 70)	intron (NM_021408, intron 60 of 70)	103541	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
chipseq_peak_11528	chr6	55810842	55811494	+	0	NA	Intergenic	Intergenic	-25850	NM_001081665	232016	Mm.333084	NM_001081665	ENSMUSG00000037973	Ccdc129	D530004J12Rik|Gm458	coiled-coil domain containing 129	protein-coding
chipseq_peak_7530	chr2	31111615	31112075	+	0	NA	intron (NM_001177648, intron 1 of 16)	Charlie1|DNA|hAT-Charlie	-15345	NM_001177650	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding
chipseq_peak_8313	chr2	146398437	146398752	+	0	NA	intron (NM_001033348, intron 21 of 40)	intron (NM_001033348, intron 21 of 40)	113410	NM_001033348	241694	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding
chipseq_peak_10969	chr5	122547604	122549374	+	0	NA	Intergenic	Intergenic	-46264	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding
chipseq_peak_7915	chr2	77755610	77756830	+	0	NA	intron (NM_178723, intron 1 of 9)	intron (NM_178723, intron 1 of 9)	-52948	NM_001113399	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding
chipseq_peak_6148	chr17	3533388	3533839	+	0	NA	TTS (NM_001101560)	TTS (NM_001101560)	1059	NM_001101560	621628	Mm.469914	NM_001101560	ENSMUSG00000091530	Cldn20	EG621628	claudin 20	protein-coding
chipseq_peak_4988	chr15	34968667	34969068	+	0	NA	intron (NM_019635, intron 8 of 10)	intron (NM_019635, intron 8 of 10)	130818	NM_001271704	16539	Mm.71045	NM_181317		Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding
chipseq_peak_11791	chr6	104882115	104882543	+	0	NA	Intergenic	Intergenic	389285	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_1446	chr10	34326761	34327194	+	0	NA	intron (NM_176968, intron 6 of 11)	intron (NM_176968, intron 6 of 11)	29556	NM_030203	72480	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding
chipseq_peak_14014	chrX	61823533	61824763	+	0	NA	Intergenic	Intergenic	114532	NM_001018087	434784	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7	leucine zipper, down-regulated in cancer 1	protein-coding
chipseq_peak_13042	chr8	84612877	84613180	+	0	NA	intron (NM_007578, intron 36 of 46)	B1_Mur1|SINE|Alu	49824	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding
chipseq_peak_10212	chr4	142886876	142888395	+	0	NA	Intergenic	Intergenic	248527	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA
chipseq_peak_2098	chr10	126708705	126709562	+	0	NA	Intergenic	Intergenic	1258	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA
chipseq_peak_5064	chr15	44764084	44766091	+	0	NA	intron (NM_176998, intron 1 of 7)	MER20|DNA|hAT-Charlie	-12629	NM_178765	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_10231	chr4	153018028	153018792	+	0	NA	Intergenic	Intergenic	320870	NR_033138	330004	Mm.291863	NM_001033414		Gm833	-	predicted gene 833	ncRNA
chipseq_peak_4404	chr14	74252856	74253206	+	0	NA	Intergenic	Intergenic	-102496	NR_046059	74425	Mm.399498	NR_046059		4933402J15Rik	-	RIKEN cDNA 4933402J15 gene	ncRNA
chipseq_peak_9543	chr4	15111790	15112380	+	0	NA	intron (NM_178617, intron 2 of 12)	intron (NM_178617, intron 2 of 12)	37046	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding
chipseq_peak_86	chr1	21635380	21635992	+	0	NA	intron (NM_001310477, intron 1 of 12)	intron (NM_001310477, intron 1 of 12)	252130	NM_001113187	98582	Mm.326336	NM_001113187	ENSMUSG00000085079	Khdc1b	AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c	KH domain containing 1B	protein-coding
chipseq_peak_7173	chr19	26845229	26845956	+	0	NA	Intergenic	Intergenic	-21685	NR_045306	70942	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA
chipseq_peak_13405	chr9	28821777	28822784	+	0	NA	intron (NM_177906, intron 4 of 7)	intron (NM_177906, intron 4 of 7)	1031011	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_4371	chr14	66161859	66162175	+	0	NA	intron (NM_172498, intron 23 of 29)	intron (NM_172498, intron 23 of 29)	21057	NM_144803	110902	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding
chipseq_peak_6424	chr17	74527788	74528554	+	0	NA	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	-124	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding
chipseq_peak_8780	chr3	60167904	60168838	+	0	NA	Intergenic	Intergenic	86502	NM_032400	84112	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding
chipseq_peak_94	chr1	21948179	21948615	+	0	NA	intron (NM_001310477, intron 1 of 12)	intron (NM_001310477, intron 1 of 12)	13545	NM_023872	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding
chipseq_peak_9844	chr4	63528801	63529448	+	0	NA	Intergenic	Intergenic	-15641	NM_024173	66290	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding
chipseq_peak_7146	chr19	23187067	23188184	+	0	NA	Intergenic	Intergenic	38194	NR_035423	100316672		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA
chipseq_peak_12266	chr7	80803384	80804016	+	0	NA	promoter-TSS (NM_016721)	promoter-TSS (NM_016721)	-369	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding
chipseq_peak_6493	chr17	87372114	87372721	+	0	NA	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	55324	NM_029298	75467	Mm.50108	NM_029298	ENSMUSG00000036557	1700011E24Rik	GSE	RIKEN cDNA 1700011E24 gene	protein-coding
chipseq_peak_11029	chr5	131955651	131956155	+	0	NA	intron (NM_177047, intron 4 of 18)	UCON14|DNA?|DNA?	75634	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_439	chr1	62348310	62348770	+	0	NA	intron (NM_001081050, intron 18 of 22)	intron (NM_001081050, intron 18 of 22)	-354777	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding
chipseq_peak_10267	chr5	9364202	9364551	+	0	NA	intron (NM_172706, intron 1 of 21)	intron (NM_172706, intron 1 of 21)	-11328	NR_030537	100124492		NR_030537	ENSMUSG00000077896	Mir879	Mirn879|mir-879|mmu-mir-879	microRNA 879	ncRNA
chipseq_peak_5717	chr16	47693028	47694782	+	0	NA	Intergenic	Intergenic	-589830	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_4831	chr15	15716572	15717311	+	0	NA	Intergenic	Intergenic	-1061160	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_12898	chr8	56475063	56475474	+	0	NA	intron (NR_131020, intron 1 of 2)	intron (NR_131020, intron 1 of 2)	9700	NR_131020	75123	Mm.72666	NR_131020		4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA
chipseq_peak_1537	chr10	48572656	48573014	+	0	NA	Intergenic	Intergenic	523008	NR_046212	100418235	Mm.185993	NR_046212		C130030K03Rik	-	proteasome (prosome, macropain) subunit, alpha type 6 pseudogene	pseudo
chipseq_peak_3483	chr13	23697430	23698473	+	0	NA	TTS (NM_178208)	TTS (NM_178208)	507	NM_178208	319155	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding
chipseq_peak_1558	chr10	51630981	51631931	+	0	NA	promoter-TSS (NM_153071)	promoter-TSS (NM_153071)	2	NM_153071	210198	Mm.221031	NM_153071	ENSMUSG00000019905	Gprc6a	-	G protein-coupled receptor, family C, group 6, member A	protein-coding
chipseq_peak_12903	chr8	57435176	57436765	+	0	NA	Intergenic	Intergenic	-19953	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding
chipseq_peak_3010	chr12	57281491	57282001	+	0	NA	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	51321	NM_001164370	73490	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly gene 1 homolog (human)	protein-coding
chipseq_peak_4849	chr15	18528172	18529136	+	0	NA	Intergenic	Intergenic	-159027	NR_045711	70886	Mm.399021	NR_045711		4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA
chipseq_peak_4315	chr14	58392368	58392896	+	0	NA	Intergenic	Intergenic	319946	NM_013518	14180	Mm.8846	NM_013518		Fgf9	Eks	fibroblast growth factor 9	protein-coding
chipseq_peak_4112	chr13	117822791	117823239	+	0	NA	intron (NM_010408, intron 3 of 7)	intron (NM_010408, intron 3 of 7)	-103004	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
chipseq_peak_22	chr1	9037748	9038624	+	0	NA	intron (NM_001290390, intron 2 of 20)	Lx8|LINE|L1	261691	NM_001290393	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
chipseq_peak_8967	chr3	82185565	82186158	+	0	NA	Intergenic	Intergenic	-39984	NM_021896	60596	Mm.143831	NM_021896	ENSMUSG00000033910	Gucy1a3	1200016O07Rik|sGC-alpha1	guanylate cyclase 1, soluble, alpha 3	protein-coding
chipseq_peak_5863	chr16	64608466	64609300	+	0	NA	Intergenic	Intergenic	-129749	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding
chipseq_peak_10165	chr4	124598122	124598699	+	0	NA	Intergenic	L1ME4a|LINE|L1	29231	NR_045819	108809	Mm.250313	NR_045819		4933407E24Rik	-	RIKEN cDNA 4933407E24 gene	ncRNA
chipseq_peak_1611	chr10	59177046	59177473	+	0	NA	intron (NM_001024910, intron 6 of 9)	intron (NM_001024910, intron 6 of 9)	44588	NM_001024910	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding
chipseq_peak_2069	chr10	123839149	123841456	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	576226	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_13061	chr8	88060095	88060447	+	0	NA	Intergenic	Intergenic	-58488	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding
chipseq_peak_7436	chr2	8452124	8453095	+	0	NA	Intergenic	Intergenic	-736906	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_6394	chr17	68874973	68875507	+	0	NA	Intergenic	Intergenic	38104	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding
chipseq_peak_11235	chr6	17384926	17385988	+	0	NA	Intergenic	Intergenic	77817	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding
chipseq_peak_9693	chr4	31804852	31805181	+	0	NA	Intergenic	L1MA9|LINE|L1	-159091	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_111	chr1	24120297	24120697	+	0	NA	Intergenic	Intergenic	-20156	NM_026604	68187	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding
chipseq_peak_12894	chr8	55997758	55998356	+	0	NA	intron (NM_080438, intron 2 of 9)	intron (NM_080438, intron 2 of 9)	57232	NM_080438	110304	Mm.307061	NM_080438		Glra3	-	glycine receptor, alpha 3 subunit	protein-coding
chipseq_peak_1182	chr1	189079670	189079989	+	0	NA	Intergenic	Intergenic	-71989	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
chipseq_peak_12556	chr7	134725482	134726487	+	0	NA	intron (NM_001033420, intron 2 of 51)	intron (NM_001033420, intron 2 of 51)	55297	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding
chipseq_peak_2038	chr10	120026265	120027006	+	0	NA	intron (NM_001277293, intron 16 of 24)	intron (NM_001277293, intron 16 of 24)	33713	NR_102387	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding
chipseq_peak_12726	chr8	34343115	34344225	+	0	NA	Intergenic	L1MC1|LINE|L1	-176958	NR_105820	102465211		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA
chipseq_peak_7102	chr19	18187950	18188827	+	0	NA	Intergenic	Intergenic	-350756	NM_001190483	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding
chipseq_peak_5989	chr16	75155446	75156041	+	0	NA	Intergenic	Intergenic	430318	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_11118	chr5	149428130	149428740	+	0	NA	intron (NM_027519, intron 4 of 4)	intron (NM_027519, intron 4 of 4)	-11225	NM_001310763	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding
chipseq_peak_2719	chr12	14858798	14860732	+	0	NA	Intergenic	Intergenic	190624	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
chipseq_peak_13541	chr9	50954968	50955731	+	0	NA	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	53724	NM_178710	235344	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding
chipseq_peak_4176	chr14	19706425	19707911	+	0	NA	Intergenic	Intergenic	-44089	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding
chipseq_peak_13071	chr8	90241578	90242056	+	0	NA	Intergenic	Intergenic	106435	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
chipseq_peak_13782	chr9	96428341	96428697	+	0	NA	Intergenic	Intergenic	50156	NM_011279	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding
chipseq_peak_13500	chr9	43699681	43701501	+	0	NA	Intergenic	Intergenic	-43985	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Pvrl1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|nectin-1	poliovirus receptor-related 1	protein-coding
chipseq_peak_2616	chr11	117059879	117060520	+	0	NA	Intergenic	Intergenic	-16584	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA
chipseq_peak_8144	chr2	123504135	123504421	+	0	NA	Intergenic	Intergenic	-585691	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
chipseq_peak_6078	chr16	84970640	84971152	+	0	NA	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-1315	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA
chipseq_peak_4037	chr13	109548354	109549765	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	224315	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_8867	chr3	71220405	71221362	+	0	NA	Intergenic	Intergenic	-413592	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
chipseq_peak_13033	chr8	82878286	82878586	+	0	NA	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	15080	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding
chipseq_peak_2197	chr11	25287560	25288428	+	0	NA	Intergenic	Intergenic	-38113	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_3763	chr13	82316180	82317560	+	0	NA	Intergenic	Intergenic	381463	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_5421	chr15	95043986	95044878	+	0	NA	intron (NM_178789, intron 6 of 7)	intron (NM_178789, intron 6 of 7)	104886	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_7693	chr2	50234835	50235932	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	61294	NM_133839	109129	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding
chipseq_peak_3718	chr13	77045320	77050128	+	0	NA	intron (NM_134071, intron 18 of 20)	intron (NM_134071, intron 18 of 20)	87744	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding
chipseq_peak_7735	chr2	56171342	56171789	+	0	NA	Intergenic	Intergenic	-614246	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
chipseq_peak_6153	chr17	3899370	3900051	+	0	NA	Intergenic	L1M6|LINE|L1	183285	NR_045764	75815	Mm.183387	NR_045764		4930470H14Rik	-	RIKEN cDNA 4930470H14 gene	ncRNA
chipseq_peak_5267	chr15	67685632	67686951	+	0	NA	Intergenic	Intergenic	459522	NR_045140	69334	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA
chipseq_peak_5259	chr15	66750045	66750716	+	0	NA	intron (NM_009375, intron 35 of 47)	intron (NM_009375, intron 35 of 47)	79610	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding
chipseq_peak_1562	chr10	52787200	52788234	+	0	NA	intron (NM_178675, intron 1 of 7)	intron (NM_178675, intron 1 of 7)	97216	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
chipseq_peak_9341	chr3	146769592	146770997	+	0	NA	promoter-TSS (NM_001164198)	promoter-TSS (NM_001164198)	-56	NM_001164198	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding
chipseq_peak_8419	chr2	180521369	180521868	+	0	NA	intron (NM_018766, intron 1 of 3)	intron (NM_018766, intron 1 of 3)	21642	NM_018766	18216	Mm.301712	NM_018766	ENSMUSG00000027568	Ntsr1	NT-1R|NTR-1|NTR1	neurotensin receptor 1	protein-coding
chipseq_peak_6624	chr18	19893515	19894392	+	0	NA	Intergenic	Intergenic	108144	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_10146	chr4	119894554	119894883	+	0	NA	intron (NM_010657, intron 1 of 8)	L1MEd|LINE|L1	80040	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chipseq_peak_3038	chr12	60010243	60010873	+	0	NA	Intergenic	Intergenic	-791075	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_3588	chr13	45822219	45824188	+	0	NA	intron (NM_009124, intron 3 of 7)	RSINE1|SINE|B4	141788	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding
chipseq_peak_3895	chr13	93368130	93370086	+	0	NA	intron (NM_152134, intron 5 of 8)	intron (NM_152134, intron 5 of 8)	61074	NM_152134	26556	Mm.37533	NM_011982		Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer homolog 1 (Drosophila)	protein-coding
chipseq_peak_10541	chr5	57930997	57932555	+	0	NA	intron (NM_001122758, intron 2 of 2)	intron (NM_001122758, intron 2 of 2)	213695	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding
chipseq_peak_8345	chr2	157877958	157878368	+	0	NA	intron (NM_025680, intron 13 of 15)	intron (NM_025680, intron 13 of 15)	-36490	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding
chipseq_peak_12089	chr7	49389285	49389587	+	0	NA	intron (NM_001111016, intron 4 of 38)	intron (NM_001111016, intron 4 of 38)	143247	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
chipseq_peak_6043	chr16	77835746	77836753	+	0	NA	Intergenic	Intergenic	189976	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_5478	chr16	6048612	6048973	+	0	NA	intron (NM_021477, intron 1 of 16)	intron (NM_021477, intron 1 of 16)	73205	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA
chipseq_peak_9289	chr3	140548414	140549217	+	0	NA	Intergenic	Intergenic	520566	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA
chipseq_peak_811	chr1	132816681	132817679	+	0	NA	Intergenic	Intergenic	-63175	NM_010732	16980	Mm.39640	NM_010732	ENSMUSG00000026443	Lrrn2	5730406J09Rik|NLRR-2	leucine rich repeat protein 2, neuronal	protein-coding
chipseq_peak_9020	chr3	95200590	95201138	+	0	NA	intron (NM_172512, intron 5 of 8)	intron (NM_172512, intron 5 of 8)	-16593	NR_108026	100504029	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA
chipseq_peak_7573	chr2	40725194	40725698	+	0	NA	exon (NM_053011, exon 71 of 91)	exon (NM_053011, exon 71 of 91)	-1499108	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding
chipseq_peak_12087	chr7	49267914	49268932	+	0	NA	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	22234	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
chipseq_peak_10977	chr5	124045174	124045976	+	0	NA	Intergenic	Intergenic	-13315	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B (yeast)	protein-coding
chipseq_peak_2728	chr12	16069053	16069439	+	0	NA	Intergenic	Intergenic	-252461	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles homolog 2 (Drosophila)	protein-coding
chipseq_peak_4876	chr15	20519971	20520390	+	0	NA	Intergenic	Intergenic	146570	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_11005	chr5	129455026	129455441	+	0	NA	Intergenic	ORSL|DNA|hAT-Tip100	-45998	NM_172276	231769	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding
chipseq_peak_7962	chr2	83223564	83224475	+	0	NA	Intergenic	Lx8|LINE|L1	-420559	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
chipseq_peak_10540	chr5	57870435	57870845	+	0	NA	intron (NM_001310608, intron 1 of 3)	intron (NM_001310608, intron 1 of 3)	152559	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding
chipseq_peak_7682	chr2	49625465	49626157	+	0	NA	intron (NM_008449, intron 1 of 25)	L1ME1|LINE|L1	6497	NM_008449	16574	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding
chipseq_peak_9729	chr4	36169049	36170498	+	0	NA	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-324569	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_4617	chr14	105708604	105708996	+	0	NA	Intergenic	Intergenic	-85030	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
chipseq_peak_5775	chr16	53342937	53344321	+	0	NA	Intergenic	Intergenic	-527885	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA
chipseq_peak_8827	chr3	67773216	67774539	+	0	NA	Intergenic	Intergenic	-118343	NM_177585	208426	Mm.246568	NM_177585	ENSMUSG00000051777	Iqcj	D230050A05|EG208426	IQ motif containing J	protein-coding
chipseq_peak_8853	chr3	69494222	69494854	+	0	NA	intron (NM_178726, intron 1 of 3)	intron (NM_178726, intron 1 of 3)	104422	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding
chipseq_peak_3824	chr13	84437581	84438018	+	0	NA	Intergenic	Intergenic	215503	NR_029419	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
chipseq_peak_2255	chr11	36926535	36927451	+	0	NA	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	17248	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
chipseq_peak_9923	chr4	77155241	77156206	+	0	NA	intron (NM_011211, intron 7 of 39)	intron (NM_011211, intron 7 of 39)	1056172	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_6764	chr18	40457957	40459617	+	0	NA	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	200426	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding
chipseq_peak_3286	chr12	95171048	95171555	+	0	NA	Intergenic	Intergenic	-520925	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chipseq_peak_14005	chrX	58066521	58066982	+	0	NA	Intergenic	Intergenic	36123	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding
chipseq_peak_4667	chr14	112236778	112237528	+	0	NA	Intergenic	Intergenic	215723	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
chipseq_peak_12123	chr7	54599368	54600349	+	0	NA	Intergenic	Intergenic	-235387	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_6437	chr17	76202751	76203026	+	0	NA	Intergenic	Intergenic	341865	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
chipseq_peak_421	chr1	58216018	58216628	+	0	NA	intron (NM_023631, intron 2 of 34)	intron (NM_023631, intron 2 of 34)	5926	NM_023631	71872	Mm.244525	NM_023631	ENSMUSG00000038242	Aox4	2310003G12Rik|Aoh2	aldehyde oxidase 4	protein-coding
chipseq_peak_7208	chr19	30117725	30118335	+	0	NA	intron (NM_138595, intron 17 of 24)	intron (NM_138595, intron 17 of 24)	57411	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding
chipseq_peak_1279	chr10	13593387	13594111	+	0	NA	Intergenic	Intergenic	-40607	NM_019961	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding
chipseq_peak_9610	chr4	23911660	23913827	+	0	NA	Intergenic	Intergenic	-583719	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_1126	chr1	178430584	178432468	+	0	NA	intron (NM_026626, intron 1 of 6)	intron (NM_026626, intron 1 of 6)	25645	NM_026626	68226	Mm.252132	NM_026626		Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding
chipseq_peak_12598	chr8	7718859	7720001	+	0	NA	Intergenic	Intergenic	941343	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_7364	chr2	4719251	4719559	+	0	NA	intron (NM_001190400, intron 1 of 8)	intron (NM_001190400, intron 1 of 8)	1574	NM_001190400	209645	Mm.149539	NM_178663	ENSMUSG00000048186	Bend7	1110017O21Rik|E130319B15Rik	BEN domain containing 7	protein-coding
chipseq_peak_8870	chr3	71955287	71955931	+	0	NA	Intergenic	B4|SINE|B4	1011257	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding
chipseq_peak_11046	chr5	133156285	133156962	+	0	NA	Intergenic	Intergenic	-614280	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
chipseq_peak_9049	chr3	104106047	104106367	+	0	NA	intron (NM_001159354, intron 1 of 20)	L2|LINE|L2	114199	NM_133853	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
chipseq_peak_9443	chr4	4771656	4772165	+	0	NA	intron (NM_177730, intron 3 of 4)	B3A|SINE|B2	21396	NM_177730	242291	Mm.218889	NM_177730		Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding
chipseq_peak_6558	chr18	4298451	4298800	+	0	NA	Intergenic	Lx8b|LINE|L1	54328	NM_007746	26410	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
chipseq_peak_12794	chr8	44206154	44207495	+	0	NA	Intergenic	Intergenic	-507333	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding
chipseq_peak_8080	chr2	110476475	110477214	+	0	NA	Intergenic	Intergenic	-113851	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding
chipseq_peak_4749	chr14	122957278	122958518	+	0	NA	intron (NM_028651, intron 5 of 17)	intron (NM_028651, intron 5 of 17)	25363	NM_028651	70551	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding
chipseq_peak_1315	chr10	18181966	18182833	+	0	NA	intron (NM_001195036, intron 3 of 20)	MER127|DNA|TcMar-Tigger	28491	NM_001195036	100045792	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|ENSMUSG00000071392|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding
chipseq_peak_10660	chr5	72698327	72698834	+	0	NA	intron (NM_001289495, intron 14 of 14)	intron (NM_001289495, intron 14 of 14)	38022	NM_013698	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding
chipseq_peak_2315	chr11	42178316	42178704	+	0	NA	intron (NM_010250, intron 2 of 9)	intron (NM_010250, intron 2 of 9)	4420	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding
chipseq_peak_10222	chr4	150347306	150347590	+	0	NA	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	65532	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding
chipseq_peak_776	chr1	127954660	127955033	+	0	NA	3' UTR (NM_027678, exon 21 of 21)	3' UTR (NM_027678, exon 21 of 21)	86073	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding
chipseq_peak_525	chr1	75342955	75343234	+	0	NA	Intergenic	Intergenic	-17198	NM_010043	13346	Mm.6712	NM_010043	ENSMUSG00000026208	Des	-	desmin	protein-coding
chipseq_peak_1940	chr10	106957946	106958629	+	0	NA	intron (NM_001142804, intron 11 of 15)	intron (NM_001142804, intron 11 of 15)	165377	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding
chipseq_peak_7403	chr2	7438800	7439214	+	0	NA	Intergenic	Intergenic	-42809	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_2181	chr11	23007560	23008302	+	0	NA	Intergenic	Intergenic	-5456	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding
chipseq_peak_13748	chr9	90681712	90682266	+	0	NA	Intergenic	Intergenic	-411220	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding
chipseq_peak_10288	chr5	13428790	13429130	+	0	NA	intron (NM_009152, intron 1 of 16)	intron (NM_009152, intron 1 of 16)	29651	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
chipseq_peak_13609	chr9	59559668	59560135	+	0	NA	intron (NM_010421, intron 7 of 13)	B3|SINE|B2	-18436	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding
chipseq_peak_464	chr1	66655258	66656278	+	0	NA	intron (NM_175510, intron 51 of 64)	(TG)n|Simple_repeat|Simple_repeat	-45063	NM_001310643	66646	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding
chipseq_peak_5531	chr16	22802685	22803109	+	0	NA	Intergenic	Intergenic	8513	NM_009967	12970	Mm.6253	NM_009967	ENSMUSG00000033501	Crygs	AI327013|Opj|rncat	crystallin, gamma S	protein-coding
chipseq_peak_11671	chr6	95198657	95199251	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	81074	NM_001008785	243574	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding
chipseq_peak_12005	chr6	145590963	145591218	+	0	NA	Intergenic	Intergenic	-24873	NM_009449	22147	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding
chipseq_peak_3930	chr13	97633497	97634783	+	0	NA	Intergenic	Intergenic	74140	NR_046157	328314	Mm.138047	NR_046157		Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA
chipseq_peak_8937	chr3	80543704	80544184	+	0	NA	Intergenic	Intergenic	258847	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_4672	chr14	113656864	113657375	+	0	NA	Intergenic	Intergenic	-1174846	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_3947	chr13	99237965	99238561	+	0	NA	intron (NM_001004149, intron 3 of 4)	intron (NM_001004149, intron 3 of 4)	53440	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding
chipseq_peak_10733	chr5	82897767	82899727	+	0	NA	Intergenic	Intergenic	-99682	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
chipseq_peak_10029	chr4	89532541	89532849	+	0	NA	Intergenic	Intergenic	-155503	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding
chipseq_peak_12782	chr8	42423771	42424156	+	0	NA	Intergenic	Intergenic	596696	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA
chipseq_peak_936	chr1	152750230	152750931	+	0	NA	promoter-TSS (NM_001081197)	promoter-TSS (NM_001081197)	29	NM_001081197	71281	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding
chipseq_peak_3532	chr13	36265416	36265801	+	0	NA	intron (NM_024274, intron 4 of 6)	intron (NM_024274, intron 4 of 6)	147965	NM_024274	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding
chipseq_peak_2870	chr12	38554851	38556019	+	0	NA	intron (NR_045943, intron 8 of 8)	intron (NR_045943, intron 8 of 8)	59086	NR_045943	73867	Mm.78933	NR_045943		4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA
chipseq_peak_12597	chr8	7665309	7666585	+	0	NA	Intergenic	Intergenic	994826	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_973	chr1	160101075	160101517	+	0	NA	intron (NM_177839, intron 18 of 21)	intron (NM_177839, intron 18 of 21)	-23311	NR_038031	75255	Mm.414845	NR_038030	ENSMUSG00000026729	4930562F07Rik	-	RIKEN cDNA 4930562F07 gene	ncRNA
chipseq_peak_10025	chr4	88195626	88196766	+	0	NA	intron (NM_001081184, intron 10 of 43)	intron (NM_001081184, intron 10 of 43)	74156	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA
chipseq_peak_12426	chr7	109318263	109319099	+	0	NA	intron (NM_054103, intron 12 of 13)	intron (NM_054103, intron 12 of 13)	120372	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding
chipseq_peak_13347	chr9	23576133	23576676	+	0	NA	Intergenic	Intergenic	353328	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding
chipseq_peak_13869	chr9	108440519	108442187	+	0	NA	intron (NM_001004192, intron 2 of 3)	B1_Mur2|SINE|Alu	4871	NM_001004192	434439	Mm.78372	NM_001004192	ENSMUSG00000050641	BC048562	-	cDNA sequence BC048562	protein-coding
chipseq_peak_8884	chr3	75597372	75598419	+	0	NA	intron (NM_009250, intron 1 of 8)	intron (NM_009250, intron 1 of 8)	40362	NM_009250	20713	Mm.41560	NM_009250		Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding
chipseq_peak_5662	chr16	41905044	41905663	+	0	NA	intron (NM_175548, intron 2 of 5)	MLT1A0|LTR|ERVL-MaLR	372011	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_7685	chr2	49830298	49830685	+	0	NA	intron (NM_027990, intron 1 of 9)	intron (NM_027990, intron 1 of 9)	42805	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding
chipseq_peak_7128	chr19	21479403	21480328	+	0	NA	Intergenic	Intergenic	-7204	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581	guanine deaminase	protein-coding
chipseq_peak_6496	chr17	88274812	88275289	+	0	NA	Intergenic	Intergenic	149538	NM_001190356	225058	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding
chipseq_peak_11311	chr6	27622299	27623305	+	0	NA	intron (NM_008174, intron 6 of 10)	intron (NM_008174, intron 6 of 10)	313948	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA
chipseq_peak_7064	chr18	90198708	90199848	+	0	NA	Intergenic	Intergenic	-310876	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding
chipseq_peak_1869	chr10	99857825	99858286	+	0	NA	Intergenic	Intergenic	-98397	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding
chipseq_peak_12645	chr8	14815111	14815482	+	0	NA	intron (NM_001145965, intron 8 of 14)	intron (NM_001145965, intron 8 of 14)	-73240	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding
chipseq_peak_615	chr1	94263186	94263724	+	0	NA	Intergenic	Intergenic	-210902	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding
chipseq_peak_5065	chr15	44768628	44769185	+	0	NA	intron (NM_176998, intron 1 of 7)	intron (NM_176998, intron 1 of 7)	-16448	NM_178765	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_13160	chr8	106069518	106070149	+	0	NA	intron (NM_010901, intron 1 of 9)	intron (NM_010901, intron 1 of 9)	10230	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding
chipseq_peak_1175	chr1	188456921	188457856	+	0	NA	intron (NM_021408, intron 19 of 70)	intron (NM_021408, intron 19 of 70)	194550	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin	Usher syndrome 2A (autosomal recessive, mild)	protein-coding
chipseq_peak_9741	chr4	38784937	38785712	+	0	NA	Intergenic	Intergenic	-664969	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
chipseq_peak_8084	chr2	110906424	110906775	+	0	NA	intron (NM_001128103, intron 1 of 26)	MIRb|SINE|MIR	43645	NM_001128103	228432	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding
chipseq_peak_1179	chr1	189046487	189046867	+	0	NA	Intergenic	Intergenic	-38837	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
chipseq_peak_5021	chr15	41408168	41408948	+	0	NA	Intergenic	Intergenic	-38924	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
chipseq_peak_4445	chr14	78941320	78942628	+	0	NA	intron (NM_173758, intron 9 of 25)	intron (NM_173758, intron 9 of 25)	92796	NM_173758	219189	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding
chipseq_peak_6846	chr18	54221978	54222349	+	0	NA	Intergenic	Intergenic	-200132	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA
chipseq_peak_591	chr1	88277216	88277944	+	0	NA	promoter-TSS (NM_172505)	promoter-TSS (NM_172505)	-1	NM_198652	381280	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding
chipseq_peak_10562	chr5	62087666	62088029	+	0	NA	Intergenic	Intergenic	279004	NM_019468	14380	Mm.347430	NM_019468		G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding
chipseq_peak_3807	chr13	83707613	83708163	+	0	NA	Intergenic	Intergenic	-20218	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA
chipseq_peak_5273	chr15	67985292	67985832	+	0	NA	Intergenic	Intergenic	273294	NM_198644	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
chipseq_peak_13458	chr9	37814694	37815123	+	0	NA	Intergenic	Intergenic	11019	NM_146883	258883	Mm.377734	NM_146883	ENSMUSG00000066750	Olfr876	MOR161-1	olfactory receptor 876	protein-coding
chipseq_peak_2949	chr12	49905614	49906286	+	0	NA	Intergenic	Intergenic	-425088	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_5120	chr15	51897310	51897679	+	0	NA	Intergenic	Intergenic	20053	NM_030132	78581	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23, small subunit (SSU) processome component, homolog (yeast)	protein-coding
chipseq_peak_2993	chr12	52835874	52836280	+	0	NA	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	136694	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding
chipseq_peak_12218	chr7	73893164	73893500	+	0	NA	Intergenic	Intergenic	67408	NR_102375	100861851		NR_102375		Gm21269	-	predicted gene, 21269	ncRNA
chipseq_peak_349	chr1	54707616	54708298	+	0	NA	intron (NM_001081433, intron 16 of 27)	intron (NM_001081433, intron 16 of 27)	-150273	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding
chipseq_peak_10872	chr5	106560621	106561118	+	0	NA	Intergenic	Intergenic	-102703	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding
chipseq_peak_706	chr1	110372938	110373170	+	0	NA	Intergenic	Intergenic	389331	NM_172853	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding
chipseq_peak_6358	chr17	63520744	63521060	+	0	NA	Intergenic	MLTR18D_MM|LTR|ERVK	-20322	NM_015794	50758	Mm.136366	NM_015794		Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
chipseq_peak_2931	chr12	48371385	48372147	+	0	NA	Intergenic	Intergenic	-70304	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA
chipseq_peak_1663	chr10	68167780	68168448	+	0	NA	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	110612	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding
chipseq_peak_4603	chr14	103718603	103719194	+	0	NA	Intergenic	Intergenic	-19466	NR_045148	70898	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA
chipseq_peak_5087	chr15	47724563	47725145	+	0	NA	intron (NM_001081391, intron 38 of 70)	MamTip2|DNA|hAT-Tip100	1067135	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
chipseq_peak_10821	chr5	97644737	97645533	+	0	NA	Intergenic	Intergenic	-188127	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding
chipseq_peak_7394	chr2	7235297	7235810	+	0	NA	intron (NM_001110231, intron 2 of 15)	intron (NM_001110231, intron 2 of 15)	-154251	NM_001110230	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_10922	chr5	113195498	113196173	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-31074	NM_001033428	333048	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding
chipseq_peak_11062	chr5	136410780	136411314	+	0	NA	intron (NM_198602, intron 2 of 22)	intron (NM_198602, intron 2 of 22)	-35244	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA
chipseq_peak_11831	chr6	108880328	108880775	+	0	NA	Intergenic	Intergenic	51910	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
chipseq_peak_11991	chr6	144367124	144368225	+	0	NA	Intergenic	Intergenic	-158106	NM_001243163	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
chipseq_peak_12851	chr8	51298437	51299545	+	0	NA	Intergenic	Intergenic	930879	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
chipseq_peak_8401	chr2	170807971	170809123	+	0	NA	intron (NM_001163686, intron 2 of 7)	intron (NM_001163686, intron 2 of 7)	76740	NM_029761	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding
chipseq_peak_6191	chr17	11573016	11574277	+	0	NA	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	309543	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA
chipseq_peak_13477	chr9	41402893	41403563	+	0	NA	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	26702	NR_131928	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA
chipseq_peak_8468	chr3	13865796	13866609	+	0	NA	intron (NM_178631, intron 3 of 9)	intron (NM_178631, intron 3 of 9)	-80170	NM_001163330	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding
chipseq_peak_1327	chr10	20380533	20381154	+	0	NA	Intergenic	Intergenic	33024	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding
chipseq_peak_12911	chr8	57962117	57963667	+	0	NA	intron (NM_175032, intron 4 of 11)	intron (NM_175032, intron 4 of 11)	-309837	NM_001167981	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
chipseq_peak_1291	chr10	14909020	14909452	+	0	NA	Intergenic	Intergenic	148947	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding
chipseq_peak_11891	chr6	119145021	119145359	+	0	NA	intron (NM_001255997, intron 1 of 46)	L3|LINE|CR1	-30063	NM_001033379	319618	Mm.250197	NM_001033379	ENSMUSG00000041477	Dcp1b	B930050E02Rik	DCP1 decapping enzyme homolog B (S. cerevisiae)	protein-coding
chipseq_peak_6512	chr17	89519322	89519841	+	0	NA	Intergenic	Intergenic	140340	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
chipseq_peak_12031	chr6	148751369	148751761	+	0	NA	Intergenic	Intergenic	-73565	NR_131024	75831	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA
chipseq_peak_10339	chr5	19546598	19547182	+	0	NA	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	319844	NM_001170746	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
chipseq_peak_6693	chr18	29515111	29516894	+	0	NA	Intergenic	(TAGA)n|Simple_repeat|Simple_repeat	-19586	NR_045391	78058	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA
chipseq_peak_8918	chr3	79867164	79868160	+	0	NA	Intergenic	Intergenic	-18268	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_186	chr1	32489650	32489988	+	0	NA	intron (NM_133235, intron 6 of 8)	intron (NM_133235, intron 6 of 8)	31180	NM_001199956	408192	Mm.485769	NM_001199956		Gm9839	ENSMUSG00000049830|Senp15	predicted gene 9839	protein-coding
chipseq_peak_9153	chr3	118940161	118940619	+	0	NA	intron (NM_170778, intron 11 of 22)	intron (NM_170778, intron 11 of 22)	378212	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding
chipseq_peak_11184	chr6	12759036	12760232	+	0	NA	Intergenic	Intergenic	-10381	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
chipseq_peak_10049	chr4	94147615	94148752	+	0	NA	Intergenic	Intergenic	408613	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
chipseq_peak_10061	chr4	97575554	97575905	+	0	NA	intron (NR_015513, intron 1 of 2)	intron (NR_015513, intron 1 of 2)	-6214	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
chipseq_peak_5218	chr15	63526759	63527620	+	0	NA	Intergenic	Intergenic	-47581	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA
chipseq_peak_8653	chr3	43839924	43840145	+	0	NA	Intergenic	Intergenic	1538226	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA
chipseq_peak_11727	chr6	99602235	99602904	+	0	NA	Intergenic	Intergenic	64202	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding
chipseq_peak_6087	chr16	86838080	86839131	+	0	NA	Intergenic	Intergenic	-515580	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
chipseq_peak_5182	chr15	60088508	60090271	+	0	NA	Intergenic	Intergenic	-72771	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding
chipseq_peak_9800	chr4	52518818	52519646	+	0	NA	Intergenic	Intergenic	-77042	NM_026652	68274	Mm.85045	NM_026652	ENSMUSG00000028314	Toporsl	4930547C10Rik	topoisomerase I binding, arginine/serine-rich like	protein-coding
chipseq_peak_7738	chr2	56455033	56455377	+	0	NA	Intergenic	Intergenic	-330606	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
chipseq_peak_13738	chr9	86619634	86620140	+	0	NA	intron (NM_008615, intron 6 of 13)	intron (NM_008615, intron 6 of 13)	47834	NM_027100	69519	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding
chipseq_peak_2426	chr11	76911119	76912402	+	0	NA	intron (NM_025655, intron 3 of 5)	intron (NM_025655, intron 3 of 5)	7215	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding
chipseq_peak_13676	chr9	72235041	72235327	+	0	NA	Intergenic	MER121|DNA|TcMar?	-39704	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding
chipseq_peak_927	chr1	151171835	151172877	+	0	NA	Intergenic	Intergenic	34322	NR_038011	402734	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA
chipseq_peak_5788	chr16	55203792	55204891	+	0	NA	Intergenic	Intergenic	78896	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
chipseq_peak_10428	chr5	40714184	40715156	+	0	NA	Intergenic	Intergenic	993021	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding
chipseq_peak_11314	chr6	28300033	28300380	+	0	NA	Intergenic	L1MB7|LINE|L1	-38605	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding
chipseq_peak_7579	chr2	41906745	41907533	+	0	NA	intron (NM_053011, intron 3 of 90)	intron (NM_053011, intron 3 of 90)	540429	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
chipseq_peak_5777	chr16	53683953	53684458	+	0	NA	Intergenic	Intergenic	-868461	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA
chipseq_peak_9133	chr3	117900068	117901757	+	0	NA	Intergenic	L1M4|LINE|L1	-31976	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_2239	chr11	32709601	32709909	+	0	NA	intron (NM_001271348, intron 2 of 12)	intron (NM_001271348, intron 2 of 12)	67200	NM_001271347	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding
chipseq_peak_12306	chr7	90004267	90004744	+	0	NA	Intergenic	L1MA5|LINE|L1	-23529	NM_021876	13626	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	ENSMUSG00000039373|l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding
chipseq_peak_980	chr1	160350148	160350792	+	0	NA	intron (NM_013862, intron 18 of 20)	intron (NM_013862, intron 18 of 20)	1101	NM_001038621	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding
chipseq_peak_13569	chr9	52773173	52773408	+	0	NA	intron (NR_045333, intron 2 of 4)	intron (NR_045333, intron 2 of 4)	93427	NR_045333	382139	Mm.335162	NR_045333		Gm1715	-	predicted gene 1715	ncRNA
chipseq_peak_10537	chr5	57791125	57791432	+	0	NA	intron (NM_001310608, intron 1 of 3)	intron (NM_001310608, intron 1 of 3)	73197	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding
chipseq_peak_2626	chr12	3887621	3888085	+	0	NA	intron (NM_001271753, intron 6 of 22)	intron (NM_001271753, intron 6 of 22)	-3891	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding
chipseq_peak_12375	chr7	94650385	94651019	+	0	NA	Intergenic	Intergenic	-1520542	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
chipseq_peak_8304	chr2	144599936	144601323	+	0	NA	intron (NM_025314, intron 1 of 5)	intron (NM_025314, intron 1 of 5)	676	NM_025314	66044	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding
chipseq_peak_5153	chr15	55652109	55652381	+	0	NA	intron (NM_016667, intron 4 of 6)	MLT1B|LTR|ERVL-MaLR	94837	NM_134092	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding
chipseq_peak_6829	chr18	52478453	52478945	+	0	NA	intron (NM_026040, intron 3 of 7)	intron (NM_026040, intron 3 of 7)	13006	NM_026040	67222	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding
chipseq_peak_5102	chr15	50285846	50286693	+	0	NA	Intergenic	Intergenic	602780	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_1877	chr10	100670830	100671378	+	0	NA	Intergenic	Intergenic	78718	NM_001081246	66605	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding
chipseq_peak_10619	chr5	67947784	67948577	+	0	NA	intron (NM_001256184, intron 2 of 3)	intron (NM_001256184, intron 2 of 3)	-5099	NR_038182	73865	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA
chipseq_peak_7523	chr2	29415142	29415470	+	0	NA	intron (NM_029615, intron 3 of 4)	intron (NM_029615, intron 3 of 4)	36792	NM_001290489	68975	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding
chipseq_peak_1893	chr10	102417893	102418350	+	0	NA	Intergenic	Intergenic	43684	NM_026243	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
chipseq_peak_6595	chr18	14993034	14993521	+	0	NA	intron (NR_045372, intron 3 of 4)	intron (NR_045372, intron 3 of 4)	4282	NR_045372	74456	Mm.391075	NR_045372		4933424G05Rik	-	RIKEN cDNA 4933424G05 gene	ncRNA
chipseq_peak_3951	chr13	99638960	99639667	+	0	NA	Intergenic	L1M4a1|LINE|L1	-122711	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding
chipseq_peak_12041	chr7	25001439	25001747	+	0	NA	intron (NM_001290469, intron 1 of 22)	(TTA)n|Simple_repeat|Simple_repeat	4344	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding
chipseq_peak_1589	chr10	55303712	55304087	+	0	NA	Intergenic	Intergenic	-803018	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding
chipseq_peak_3186	chr12	75758493	75758738	+	0	NA	Intergenic	Intergenic	-22886	NM_030750	81535	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding
chipseq_peak_9538	chr4	14621577	14624351	+	0	NA	Intergenic	Intergenic	-1186	NM_145947	208890	Mm.483839	NM_145947	ENSMUSG00000040569	Slc26a7	-	solute carrier family 26, member 7	protein-coding
chipseq_peak_10787	chr5	89814491	89814963	+	0	NA	intron (NM_177872, intron 3 of 21)	intron (NM_177872, intron 3 of 21)	68607	NM_001081401	330119	Mm.133062	NM_177872		Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding
chipseq_peak_1677	chr10	69153706	69154013	+	0	NA	Intergenic	Intergenic	-54693	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding
chipseq_peak_834	chr1	137846500	137848098	+	0	NA	Intergenic	Intergenic	-119156	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA
chipseq_peak_12474	chr7	117672295	117672951	+	0	NA	Intergenic	Intergenic	291644	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_2630	chr12	4835592	4836140	+	0	NA	intron (NM_016863, intron 2 of 3)	intron (NM_016863, intron 2 of 3)	5729	NM_016863	14226	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding
chipseq_peak_7120	chr19	20240212	20241622	+	0	NA	Intergenic	Intergenic	149754	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding
chipseq_peak_11564	chr6	63465924	63467213	+	0	NA	intron (NM_008167, intron 1 of 15)	intron (NM_008167, intron 1 of 15)	209711	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
chipseq_peak_1868	chr10	99824550	99825156	+	0	NA	Intergenic	L1MD|LINE|L1	-65195	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding
chipseq_peak_669	chr1	103498407	103499563	+	0	NA	Intergenic	Intergenic	-1269834	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_13308	chr9	11602928	11603317	+	0	NA	Intergenic	Intergenic	-698347	NM_001170787	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding
chipseq_peak_6655	chr18	23442659	23444567	+	0	NA	intron (NM_207650, intron 1 of 20)	intron (NM_207650, intron 1 of 20)	28204	NM_001285807	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding
chipseq_peak_6427	chr17	75087507	75087882	+	0	NA	intron (NM_019919, intron 3 of 33)	intron (NM_019919, intron 3 of 33)	82165	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding
chipseq_peak_13447	chr9	34799610	34799918	+	0	NA	intron (NM_001190912, intron 1 of 15)	L1MC3|LINE|L1	311033	NM_001190912	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding
chipseq_peak_1527	chr10	46483382	46484065	+	0	NA	Intergenic	Intergenic	238974	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA
chipseq_peak_6301	chr17	52701892	52702666	+	0	NA	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	99570	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
chipseq_peak_12737	chr8	36326325	36327111	+	0	NA	Intergenic	Intergenic	-77202	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding
chipseq_peak_11663	chr6	93699411	93699825	+	0	NA	exon (NM_001083320, exon 16 of 23)	exon (NM_001083320, exon 16 of 23)	213345	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
chipseq_peak_1266	chr10	10949157	10949618	+	0	NA	intron (NM_016976, intron 2 of 8)	intron (NM_016976, intron 2 of 8)	132944	NM_001114333	14816	Mm.391904	NM_016976	ENSMUSG00000019828	Grm1	4930455H15Rik|ENSMUSG00000075319|Gm10828|Gprc1a|mGluR1|nmf373|rcw|wobl	glutamate receptor, metabotropic 1	protein-coding
chipseq_peak_10599	chr5	66387614	66388010	+	0	NA	intron (NM_001310626, intron 8 of 15)	intron (NM_001310626, intron 8 of 15)	-50147	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
chipseq_peak_2965	chr12	50709123	50709897	+	0	NA	Intergenic	Intergenic	-60287	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_3432	chr13	15113303	15113602	+	0	NA	Intergenic	Intergenic	-350271	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding
chipseq_peak_11802	chr6	106200962	106201370	+	0	NA	intron (NM_173004, intron 5 of 19)	intron (NM_173004, intron 5 of 19)	82401	NM_001109751	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding
chipseq_peak_9556	chr4	16609169	16609708	+	0	NA	Intergenic	Intergenic	445328	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA
chipseq_peak_2247	chr11	35915880	35916877	+	0	NA	intron (NM_170779, intron 1 of 22)	intron (NM_170779, intron 1 of 22)	63711	NM_170779	211652	Mm.31267	NM_170779		Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding
chipseq_peak_2296	chr11	40715656	40716066	+	0	NA	intron (NM_013552, intron 8 of 17)	intron (NM_013552, intron 8 of 17)	17576	NM_013552	15366	Mm.116997	NM_013552	ENSMUSG00000020330	Hmmr	AA386826|CD168|Rhamm	hyaluronan mediated motility receptor (RHAMM)	protein-coding
chipseq_peak_4116	chr13	117970130	117970594	+	0	NA	intron (NM_010408, intron 6 of 7)	intron (NM_010408, intron 6 of 7)	-250351	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
chipseq_peak_5118	chr15	51805273	51805735	+	0	NA	intron (NM_080635, intron 2 of 7)	intron (NM_080635, intron 2 of 7)	59957	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
chipseq_peak_367	chr1	55977163	55978643	+	0	NA	Intergenic	Intergenic	-41075	NR_126076	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_9920	chr4	76699112	76699598	+	0	NA	intron (NM_011211, intron 9 of 39)	Lx8b|LINE|L1	-1421069	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_114	chr1	24171383	24171859	+	0	NA	Intergenic	Intergenic	-5989	NM_007740	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding
chipseq_peak_9930	chr4	77698047	77698827	+	0	NA	intron (NM_011211, intron 2 of 39)	intron (NM_011211, intron 2 of 39)	513458	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_9468	chr4	7172872	7173340	+	0	NA	Intergenic	Intergenic	-182383	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_264	chr1	41506409	41506973	+	0	NA	Intergenic	Intergenic	-325439	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_1856	chr10	99323255	99323914	+	0	NA	Intergenic	Intergenic	60353	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chipseq_peak_2355	chr11	52771408	52771814	+	0	NA	intron (NM_177059, intron 1 of 15)	RCHARR1|DNA|hAT-Charlie	6905	NM_177059	320027	Mm.44518	NM_177059		Fstl4	B230374F23Rik|SPIG1|mKIAA1061	follistatin-like 4	protein-coding
chipseq_peak_8228	chr2	138379292	138379694	+	0	NA	Intergenic	Intergenic	101000	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
chipseq_peak_4843	chr15	17802746	17804174	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	566167	NR_045711	70886	Mm.399021	NR_045711		4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA
chipseq_peak_2585	chr11	110706990	110707870	+	0	NA	Intergenic	Intergenic	-260603	NM_010604	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
chipseq_peak_5795	chr16	56229970	56230243	+	0	NA	intron (NM_174876, intron 7 of 19)	Charlie1a|DNA|hAT-Charlie	25793	NM_174876	224224	Mm.151998	NM_174876	ENSMUSG00000035270	Impg2	IPM200|PG10.2|Rsbp|Spacrcan	interphotoreceptor matrix proteoglycan 2	protein-coding
chipseq_peak_11299	chr6	25183368	25184896	+	0	NA	Intergenic	Intergenic	-228007	NM_177013	319832	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding
chipseq_peak_10106	chr4	104620347	104621291	+	0	NA	intron (NR_104385, intron 4 of 15)	intron (NR_104385, intron 4 of 15)	-145498	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding
chipseq_peak_9459	chr4	6344964	6346239	+	0	NA	Intergenic	Intergenic	-20079	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding
chipseq_peak_1203	chr1	193575841	193576385	+	0	NA	Intergenic	Intergenic	-68583	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA
chipseq_peak_10405	chr5	38911785	38912141	+	0	NA	Intergenic	L1MD1|LINE|L1	-35270	NM_013748	27278	Mm.440845	NM_013748	ENSMUSG00000039315	Clnk	MIST	cytokine-dependent hematopoietic cell linker	protein-coding
chipseq_peak_6474	chr17	83035258	83035897	+	0	NA	intron (NR_045094, intron 3 of 3)	Zaphod|DNA|hAT-Tip100	42648	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
chipseq_peak_408	chr1	57263973	57265832	+	0	NA	Intergenic	Intergenic	-49906	NR_037990	407809	Mm.134505	NR_037990	ENSMUSG00000101429	BC055402	-	cDNA sequence BC055402	ncRNA
chipseq_peak_7479	chr2	15702784	15703933	+	0	NA	intron (NM_001310455, intron 17 of 38)	intron (NM_001310455, intron 17 of 38)	176879	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding
chipseq_peak_13258	chr8	127492148	127493049	+	0	NA	intron (NM_001309391, intron 22 of 24)	intron (NM_001309391, intron 22 of 24)	192946	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_5701	chr16	45943331	45943900	+	0	NA	Intergenic	Intergenic	66798	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding
chipseq_peak_335	chr1	52669929	52670425	+	0	NA	intron (NM_133829, intron 3 of 6)	intron (NM_133829, intron 3 of 6)	39472	NM_001142647	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Tmem194b	5330401P04Rik|9830163O08|Nemp2	transmembrane protein 194B	protein-coding
chipseq_peak_1265	chr10	10701208	10702196	+	0	NA	intron (NM_001114333, intron 8 of 9)	intron (NM_001114333, intron 8 of 9)	-49344	NR_046010	78056	Mm.271285	NR_046010		4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA
chipseq_peak_14031	chrX	69234484	69234726	+	0	NA	Intergenic	Intergenic	-125726	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding
chipseq_peak_7925	chr2	78451760	78452930	+	0	NA	Intergenic	Intergenic	214798	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding
chipseq_peak_13469	chr9	40678788	40679143	+	0	NA	Intergenic	Intergenic	-6999	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding
chipseq_peak_9002	chr3	85789342	85790637	+	0	NA	Intergenic	Intergenic	-43780	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding
chipseq_peak_8229	chr2	138476503	138476927	+	0	NA	Intergenic	Intergenic	198222	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
chipseq_peak_4965	chr15	32232056	32232495	+	0	NA	Intergenic	Intergenic	9657	NR_028575	66835		NR_028575	ENSMUSG00000089317	Snord123	-	small nucleolar RNA, C/D box 123	snoRNA
chipseq_peak_7803	chr2	62337455	62339953	+	0	NA	intron (NM_010074, intron 23 of 25)	intron (NM_010074, intron 23 of 25)	73527	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding
chipseq_peak_6392	chr17	68852038	68852939	+	0	NA	Intergenic	Intergenic	15352	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding
chipseq_peak_1754	chr10	87209489	87210107	+	0	NA	intron (NM_029685, intron 4 of 5)	intron (NM_029685, intron 4 of 5)	151752	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding
chipseq_peak_798	chr1	131467685	131468286	+	0	NA	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	59376	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding
chipseq_peak_13890	chr9	112398377	112399398	+	0	NA	Intergenic	L1MCa|LINE|L1	142313	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_2400	chr11	68648895	68650318	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-42309	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding
chipseq_peak_5	chr1	5022595	5023029	+	0	NA	intron (NM_001177795, intron 1 of 5)	intron (NM_001177795, intron 1 of 5)	-3273	NM_021374	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding
chipseq_peak_9039	chr3	101382628	101383029	+	0	NA	intron (NM_207205, intron 2 of 10)	MIRb|SINE|MIR	5703	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding
chipseq_peak_6102	chr16	89757395	89757881	+	0	NA	Intergenic	Intergenic	60714	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding
chipseq_peak_10915	chr5	112101852	112102414	+	0	NA	Intergenic	Intergenic	-104630	NR_045378	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA
chipseq_peak_10520	chr5	56060174	56060452	+	0	NA	Intergenic	Intergenic	1657606	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_7199	chr19	28590985	28591551	+	0	NA	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-86956	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_3713	chr13	76464940	76466106	+	0	NA	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	80562	NM_030174	78771	Mm.316249	NM_030174		Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding
chipseq_peak_4224	chr14	29062892	29063446	+	0	NA	intron (NM_009785, intron 20 of 37)	intron (NM_009785, intron 20 of 37)	44961	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding
chipseq_peak_5042	chr15	43782114	43782640	+	0	NA	Intergenic	Intergenic	87652	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
chipseq_peak_4577	chr14	97165679	97166155	+	0	NA	Intergenic	Intergenic	-646883	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
chipseq_peak_10344	chr5	20140124	20141106	+	0	NA	intron (NM_001170745, intron 2 of 20)	intron (NM_001170745, intron 2 of 20)	233097	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
chipseq_peak_1608	chr10	58991824	58992371	+	0	NA	intron (NM_172788, intron 2 of 9)	intron (NM_172788, intron 2 of 9)	178738	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding
chipseq_peak_7695	chr2	50555312	50555569	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	258630	NR_040361	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA
chipseq_peak_10342	chr5	19981781	19982487	+	0	NA	intron (NM_001170745, intron 1 of 20)	intron (NM_001170745, intron 1 of 20)	74616	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
chipseq_peak_2764	chr12	26795915	26796231	+	0	NA	Intergenic	Intergenic	318922	NR_045052	100504347	Mm.130500	NR_045052		Gm20187	-	predicted gene, 20187	ncRNA
chipseq_peak_12554	chr7	133812788	133814128	+	0	NA	intron (NM_025850, intron 1 of 10)	intron (NM_025850, intron 1 of 10)	-30673	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding
chipseq_peak_397	chr1	56738412	56739712	+	0	NA	Intergenic	Intergenic	-101611	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_6576	chr18	10739360	10739703	+	0	NA	intron (NM_144860, intron 1 of 20)	intron (NM_144860, intron 1 of 20)	13906	NM_144860	225164	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb homolog 1 (Drosophila)	protein-coding
chipseq_peak_511	chr1	72188125	72188698	+	0	NA	intron (NM_001005423, intron 2 of 4)	intron (NM_001005423, intron 2 of 4)	23896	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding
chipseq_peak_711	chr1	111660170	111660650	+	0	NA	Intergenic	Intergenic	204508	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
chipseq_peak_8838	chr3	68246899	68247495	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	182395	NM_001113421	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_1973	chr10	110309393	110310275	+	0	NA	Intergenic	Intergenic	-290816	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
chipseq_peak_1054	chr1	171993059	171993350	+	0	NA	Intergenic	Intergenic	34091	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding
chipseq_peak_6357	chr17	63467820	63468362	+	0	NA	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	32489	NM_015794	50758	Mm.136366	NM_015794		Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
chipseq_peak_7878	chr2	70851969	70853345	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-27177	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding
chipseq_peak_11435	chr6	43774834	43776971	+	0	NA	Intergenic	L1MB1|LINE|L1	-109624	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
chipseq_peak_9679	chr4	31328290	31329622	+	0	NA	Intergenic	Intergenic	-635151	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_10187	chr4	131304076	131304945	+	0	NA	Intergenic	Intergenic	-294036	NR_130167	77835	Mm.348412	NR_130167	ENSMUSG00000086262	A930031H19Rik	A930004I12Rik	RIKEN cDNA A930031H19 gene	ncRNA
chipseq_peak_10545	chr5	58098758	58099169	+	0	NA	intron (NM_001310608, intron 3 of 3)	intron (NM_001310608, intron 3 of 3)	354035	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA
chipseq_peak_647	chr1	98121246	98121841	+	0	NA	Intergenic	L1MD|LINE|L1	-9924	NR_040439	69030	Mm.402692	NR_040439	ENSMUSG00000100182	1810006J02Rik	-	RIKEN cDNA 1810006J02 gene	ncRNA
chipseq_peak_13212	chr8	114076621	114077067	+	0	NA	Intergenic	Intergenic	-56730	NM_024437	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding
chipseq_peak_4387	chr14	68784140	68784808	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-128632	NR_102399	13522	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding
chipseq_peak_2515	chr11	94042692	94044463	+	0	NA	promoter-TSS (NM_001199205)	promoter-TSS (NM_001199205)	-628	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding
chipseq_peak_1151	chr1	183183110	183183980	+	0	NA	intron (NM_001278218, intron 1 of 8)	intron (NM_001278218, intron 1 of 8)	-35988	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched homolog 1 (Drosophila)	protein-coding
chipseq_peak_11989	chr6	144207064	144209118	+	0	NA	intron (NM_001113559, intron 1 of 13)	intron (NM_001113559, intron 1 of 13)	1477	NM_011444	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
chipseq_peak_13041	chr8	84104779	84105206	+	0	NA	promoter-TSS (NM_172502)	promoter-TSS (NM_172502)	-230	NM_172502	212123	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding
chipseq_peak_12955	chr8	65393952	65394465	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-223832	NM_001293784	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
chipseq_peak_5090	chr15	48252561	48253959	+	0	NA	intron (NM_001081391, intron 10 of 70)	intron (NM_001081391, intron 10 of 70)	538729	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
chipseq_peak_5347	chr15	83780999	83782577	+	0	NA	intron (NM_172610, intron 1 of 6)	intron (NM_172610, intron 1 of 6)	1765	NM_172610	223726	Mm.36395	NM_172610	ENSMUSG00000041708	Mpped1	6230403M19|AW456965|D15Bwg0669e	metallophosphoesterase domain containing 1	protein-coding
chipseq_peak_3925	chr13	97401627	97402783	+	0	NA	Intergenic	Intergenic	-32765	NR_110432	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA
chipseq_peak_12544	chr7	132503497	132503883	+	0	NA	Intergenic	L1MC|LINE|L1	72708	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874	ornithine aminotransferase	protein-coding
chipseq_peak_11749	chr6	101937540	101939115	+	0	NA	Intergenic	Intergenic	164078	NR_027989	207157	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157|ENSMUSG00000052236	predicted gene 9871	ncRNA
chipseq_peak_11436	chr6	44079362	44079894	+	0	NA	Intergenic	Intergenic	-413350	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
chipseq_peak_3988	chr13	104776212	104776655	+	0	NA	intron (NM_026072, intron 10 of 13)	Charlie1|DNA|hAT-Charlie	40520	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
chipseq_peak_3837	chr13	85164737	85165204	+	0	NA	Intergenic	Intergenic	-24507	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
chipseq_peak_13239	chr8	122954706	122955367	+	0	NA	intron (NR_037865, intron 2 of 13)	B3|SINE|B2	87248	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding
chipseq_peak_9395	chr3	152843082	152843525	+	0	NA	intron (NM_012028, intron 3 of 4)	intron (NM_012028, intron 3 of 4)	129203	NM_178016	329777	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding
chipseq_peak_9028	chr3	98067449	98068463	+	0	NA	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	54418	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding
chipseq_peak_3398	chr13	6260531	6260879	+	0	NA	Intergenic	Intergenic	-287452	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding
chipseq_peak_10214	chr4	145104915	145105903	+	0	NA	intron (NM_001276465, intron 39 of 69)	intron (NM_001276465, intron 39 of 69)	85257	NM_001276502	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13 D (yeast)	protein-coding
chipseq_peak_2174	chr11	21027130	21027575	+	0	NA	Intergenic	Intergenic	-63972	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding
chipseq_peak_10684	chr5	76618475	76619086	+	0	NA	intron (NM_199032, intron 12 of 24)	intron (NM_199032, intron 12 of 24)	27066	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding
chipseq_peak_2096	chr10	126531274	126531627	+	0	NA	Intergenic	Intergenic	178941	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA
chipseq_peak_1406	chr10	29374103	29374583	+	0	NA	Intergenic	Intergenic	-11901	NM_001110198	68031	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding
chipseq_peak_4376	chr14	66925951	66926408	+	0	NA	Intergenic	Intergenic	14971	NM_175498	239157	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding
chipseq_peak_6933	chr18	66549948	66550331	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	45961	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA
chipseq_peak_10593	chr5	65145419	65145929	+	0	NA	intron (NM_175174, intron 4 of 10)	intron (NM_175174, intron 4 of 10)	14443	NM_175174	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding
chipseq_peak_6818	chr18	51223295	51224588	+	0	NA	intron (NM_001081224, intron 1 of 1)	intron (NM_001081224, intron 1 of 1)	106043	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding
chipseq_peak_12465	chr7	117139592	117140090	+	0	NA	Intergenic	Intergenic	-241138	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_9260	chr3	136963136	136963777	+	0	NA	Intergenic	L1MC5|LINE|L1	293390	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding
chipseq_peak_8102	chr2	113776358	113777136	+	0	NA	3' UTR (NM_009162, exon 6 of 6)	3' UTR (NM_009162, exon 6 of 6)	-18099	NM_011824	23892	Mm.166318	NM_011824		Grem1	Cktsf1b1|Drm|Grem|ld	gremlin 1	protein-coding
chipseq_peak_8958	chr3	81963856	81964900	+	0	NA	intron (NM_019911, intron 7 of 11)	intron (NM_019911, intron 7 of 11)	11350	NM_019911	56720	Mm.258622	NM_019911		Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding
chipseq_peak_872	chr1	141857195	141857726	+	0	NA	Intergenic	Intergenic	-1201058	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_1849	chr10	98886179	98886590	+	0	NA	Intergenic	Intergenic	-28768	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding
chipseq_peak_10678	chr5	74994510	74995244	+	0	NA	Intergenic	Intergenic	45683	NR_045866	619945	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA
chipseq_peak_3359	chr12	117530320	117531562	+	0	NA	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	14462	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chipseq_peak_1471	chr10	38668581	38668999	+	0	NA	Intergenic	L1MC3|LINE|L1	152989	NM_001177783	215919	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding
chipseq_peak_7951	chr2	81136089	81136888	+	0	NA	Intergenic	Intergenic	497224	NM_001190179	69482	Mm.29200	NM_027091		Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding
chipseq_peak_2104	chr10	126962671	126963016	+	0	NA	Intergenic	Intergenic	-15874	NM_001113470	52468	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding
chipseq_peak_5909	chr16	70289718	70290621	+	0	NA	Intergenic	Intergenic	-23780	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding
chipseq_peak_5562	chr16	26639870	26640312	+	0	NA	intron (NM_134103, intron 2 of 7)	intron (NM_134103, intron 2 of 7)	58386	NM_008364	16180	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding
chipseq_peak_12728	chr8	34442577	34443092	+	0	NA	Intergenic	Intergenic	197482	NR_040706	330734	Mm.149998	NR_040706		B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA
chipseq_peak_4443	chr14	78287398	78288169	+	0	NA	intron (NM_011613, intron 2 of 4)	(CA)n|Simple_repeat|Simple_repeat	20260	NM_011613	21943	Mm.249221	NM_011613	ENSMUSG00000022015	Tnfsf11	Ly109l|ODF|OPG|OPGL|RANKL|Trance	tumor necrosis factor (ligand) superfamily, member 11	protein-coding
chipseq_peak_12657	chr8	16223842	16224568	+	0	NA	intron (NM_053171, intron 16 of 69)	intron (NM_053171, intron 16 of 69)	-55367	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_3550	chr13	42603099	42603924	+	0	NA	Intergenic	Intergenic	-77288	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_52	chr1	15991165	15991510	+	0	NA	Intergenic	Intergenic	-98615	NM_001033288	226866	Mm.131665	NM_001033288	ENSMUSG00000032719	Sbspon	Gm106|Rpesp	somatomedin B and thrombospondin, type 1 domain containing	protein-coding
chipseq_peak_6276	chr17	49709070	49709818	+	0	NA	intron (NM_177052, intron 7 of 22)	intron (NM_177052, intron 7 of 22)	94272	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding
chipseq_peak_13156	chr8	104093338	104093737	+	0	NA	intron (NR_131138, intron 1 of 2)	L1MB7|LINE|L1	-8088	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding
chipseq_peak_5906	chr16	70179013	70179463	+	0	NA	Intergenic	Intergenic	-134711	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding
chipseq_peak_246	chr1	40600570	40602074	+	0	NA	intron (NM_177084, intron 3 of 11)	intron (NM_177084, intron 3 of 11)	21095	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding
chipseq_peak_1248	chr10	9294642	9294956	+	0	NA	Intergenic	Intergenic	380409	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
chipseq_peak_212	chr1	35137842	35138313	+	0	NA	Intergenic	Intergenic	288118	NM_175421	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding
chipseq_peak_3052	chr12	61812178	61814065	+	0	NA	intron (NM_001310586, intron 2 of 5)	ORR1A1|LTR|ERVL-MaLR	289954	NM_178714	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
chipseq_peak_9130	chr3	117839784	117841348	+	0	NA	intron (NM_001190156, intron 2 of 7)	intron (NM_001190156, intron 2 of 7)	28370	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_7144	chr19	23022927	23023276	+	0	NA	Intergenic	Intergenic	-118125	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding
chipseq_peak_642	chr1	98002686	98003793	+	0	NA	intron (NM_013626, intron 1 of 25)	intron (NM_013626, intron 1 of 25)	44554	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA
chipseq_peak_1385	chr10	27382727	27383374	+	0	NA	intron (NM_008481, intron 4 of 63)	intron (NM_008481, intron 4 of 63)	-6816	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_1285	chr10	14195674	14196282	+	0	NA	Intergenic	Intergenic	229599	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chipseq_peak_6586	chr18	12917154	12918465	+	0	NA	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	24032	NM_207530	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding
chipseq_peak_2863	chr12	37971502	37972289	+	0	NA	intron (NM_178681, intron 1 of 24)	intron (NM_178681, intron 1 of 24)	91190	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding
chipseq_peak_4011	chr13	107900193	107900559	+	0	NA	Intergenic	Intergenic	-10312	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding
chipseq_peak_3494	chr13	27656530	27657084	+	0	NA	Intergenic	Intergenic	11229	NM_011168	19114	Mm.153999	NM_011168	ENSMUSG00000046899	Prl7a2	Ghd18|PLP-F|Prlpf	prolactin family 7, subfamily a, member 2	protein-coding
chipseq_peak_13950	chr9	120869263	120870319	+	0	NA	Intergenic	Intergenic	45459	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA
chipseq_peak_13582	chr9	56237225	56237620	+	0	NA	intron (NM_172924, intron 5 of 6)	intron (NM_172924, intron 5 of 6)	-76352	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding
chipseq_peak_2061	chr10	123488390	123488770	+	0	NA	intron (NM_182807, intron 2 of 5)	intron (NM_182807, intron 2 of 5)	224504	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_593	chr1	88500738	88501267	+	0	NA	3' UTR (NM_008132, exon 3 of 3)	3' UTR (NM_008132, exon 3 of 3)	9064	NM_008132	14659	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding
chipseq_peak_5455	chr15	102686659	102687389	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-15158	NR_030460	751542		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA
chipseq_peak_14107	chrX	158153776	158155719	+	0	NA	Intergenic	Intergenic	-111550	NM_001310719	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding
chipseq_peak_2631	chr12	4991261	4991717	+	0	NA	intron (NM_001099628, intron 21 of 30)	intron (NM_001099628, intron 21 of 30)	74136	NM_001099628	320817	Mm.210966	NM_001099628		Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding
chipseq_peak_6711	chr18	30797134	30797637	+	0	NA	Intergenic	L1MA9|LINE|L1	519743	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_5054	chr15	44637933	44638445	+	0	NA	intron (NM_019480, intron 6 of 6)	intron (NM_019480, intron 6 of 6)	18548	NM_019480	55960	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding
chipseq_peak_8222	chr2	137616690	137616996	+	0	NA	Intergenic	Intergenic	-500323	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding
chipseq_peak_3472	chr13	21160689	21161581	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-18080	NM_146534	258527	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding
chipseq_peak_7589	chr2	43060335	43061891	+	0	NA	Intergenic	Intergenic	-407515	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding
chipseq_peak_1607	chr10	58935665	58936919	+	0	NA	intron (NM_172788, intron 1 of 9)	intron (NM_172788, intron 1 of 9)	122933	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding
chipseq_peak_788	chr1	129357286	129357690	+	0	NA	intron (NM_172485, intron 1 of 27)	intron (NM_172485, intron 1 of 27)	84184	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding
chipseq_peak_4356	chr14	64414910	64418449	+	0	NA	intron (NM_001253712, intron 1 of 5)	intron (NM_001253712, intron 1 of 5)	277	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_11262	chr6	20769878	20771318	+	0	NA	Intergenic	Intergenic	-445511	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding
chipseq_peak_7699	chr2	50974947	50975527	+	0	NA	Intergenic	Intergenic	65553	NR_033595	227885	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	OTTMUSG00000012426	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo
chipseq_peak_5256	chr15	66680181	66681104	+	0	NA	intron (NM_009375, intron 8 of 47)	intron (NM_009375, intron 8 of 47)	9872	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding
chipseq_peak_7298	chr19	52069817	52070474	+	0	NA	Intergenic	Intergenic	-194152	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding
chipseq_peak_1550	chr10	50136179	50136964	+	0	NA	Intergenic	Intergenic	-347817	NM_010349	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding
chipseq_peak_6484	chr17	84890914	84891516	+	0	NA	Intergenic	Intergenic	-65526	NM_001159497	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding
chipseq_peak_7868	chr2	67850682	67851181	+	0	NA	Intergenic	Intergenic	69888	NR_105752	102466627		NR_105752	ENSMUSG00000098734	Mir6335	Gm27836|mmu-mir-6335	microRNA 6335	ncRNA
chipseq_peak_5575	chr16	28463413	28463865	+	0	NA	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	-17564	NM_183064	14167	Mm.7996	NM_010199		Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding
chipseq_peak_113	chr1	24134754	24135435	+	0	NA	Intergenic	Intergenic	-34753	NM_026604	68187	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding
chipseq_peak_12062	chr7	36522782	36523471	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	-174992	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding
chipseq_peak_1275	chr10	13225607	13226203	+	0	NA	intron (NM_001195065, intron 11 of 12)	intron (NM_001195065, intron 11 of 12)	-32768	NM_181470	353258	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 homolog (S. cerevisiae)	protein-coding
chipseq_peak_4794	chr15	11607539	11607905	+	0	NA	Intergenic	Intergenic	-208064	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding
chipseq_peak_6525	chr17	90627616	90629020	+	0	NA	intron (NM_020252, intron 10 of 22)	intron (NM_020252, intron 10 of 22)	-232851	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_9128	chr3	117819470	117819987	+	0	NA	intron (NM_029655, intron 7 of 8)	intron (NM_029655, intron 7 of 8)	49208	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_2056	chr10	123377366	123377804	+	0	NA	intron (NR_045514, intron 1 of 5)	intron (NR_045514, intron 1 of 5)	113509	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_11615	chr6	77847397	77848075	+	0	NA	intron (NM_009819, intron 1 of 18)	intron (NM_009819, intron 1 of 18)	131931	NM_001109764	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding
chipseq_peak_5896	chr16	68229372	68230225	+	0	NA	Intergenic	Intergenic	-608890	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_10113	chr4	105015600	105017033	+	0	NA	non-coding (NR_104376, exon 21 of 21)	non-coding (NR_104376, exon 21 of 21)	93582	NM_178143	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding
chipseq_peak_10595	chr5	65191516	65192050	+	0	NA	Intergenic	Intergenic	-7913	NM_153391	213081	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding
chipseq_peak_7623	chr2	44223145	44223981	+	0	NA	intron (NM_001301832, intron 12 of 14)	intron (NM_001301832, intron 12 of 14)	-158239	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_10091	chr4	103636173	103637273	+	0	NA	Intergenic	Intergenic	254223	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA
chipseq_peak_7338	chr19	59043399	59045018	+	0	NA	intron (NM_175172, intron 3 of 14)	intron (NM_175172, intron 3 of 14)	31861	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding
chipseq_peak_12330	chr7	91431879	91432230	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	341268	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_9546	chr4	15301558	15302014	+	0	NA	Intergenic	Intergenic	35966	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding
chipseq_peak_10173	chr4	127020730	127021173	+	0	NA	promoter-TSS (NM_023603)	promoter-TSS (NM_023603)	-350	NR_045010	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding
chipseq_peak_10614	chr5	66980038	66981985	+	0	NA	intron (NM_001256122, intron 3 of 20)	intron (NM_001256122, intron 3 of 20)	12595	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding
chipseq_peak_9632	chr4	25460171	25460597	+	0	NA	Intergenic	Intergenic	-178563	NM_026194	67490	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding
chipseq_peak_4464	chr14	80374158	80374697	+	0	NA	Intergenic	Intergenic	374125	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_10095	chr4	104023804	104024272	+	0	NA	Intergenic	MIRc|SINE|MIR	-343500	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
chipseq_peak_869	chr1	141786562	141787500	+	0	NA	Intergenic	L1M2|LINE|L1	-1130629	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_6924	chr18	66081683	66082667	+	0	NA	intron (NM_178793, intron 5 of 10)	intron (NM_178793, intron 5 of 10)	-79540	NM_027400	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding
chipseq_peak_5191	chr15	61102437	61102749	+	0	NA	Intergenic	Intergenic	-181323	NM_001081067	117586	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding
chipseq_peak_5176	chr15	59036352	59037889	+	0	NA	intron (NM_001146180, intron 3 of 13)	B3|SINE|B2	44906	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding
chipseq_peak_611	chr1	94001001	94001457	+	0	NA	intron (NM_001039219, intron 5 of 7)	intron (NM_001039219, intron 5 of 7)	10720	NM_001039219	619597	Mm.417228	NM_001039219		Gm6086	EG619597|Gm219	predicted gene 6086	protein-coding
chipseq_peak_9186	chr3	123093067	123093461	+	0	NA	intron (NM_080451, intron 4 of 4)	intron (NM_080451, intron 4 of 4)	-58277	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding
chipseq_peak_5252	chr15	66514477	66515071	+	0	NA	Intergenic	Intergenic	-13864	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding
chipseq_peak_4689	chr14	114981027	114981529	+	0	NA	Intergenic	Intergenic	-35330	NR_126551	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA
chipseq_peak_3132	chr12	71371979	71372351	+	0	NA	Intergenic	Intergenic	62281	NM_021532	59036	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dapper homolog 1, antagonist of beta-catenin (xenopus)	protein-coding
chipseq_peak_12165	chr7	61982204	61982633	+	0	NA	promoter-TSS (NR_037287)	promoter-TSS (NR_037287)	-59	NR_037287	100526507		NR_037287	ENSMUSG00000092850	Mir344g	mir-344g|mmu-mir-344g	microRNA 344g	ncRNA
chipseq_peak_3610	chr13	46634128	46635023	+	0	NA	intron (NM_026056, intron 7 of 12)	intron (NM_026056, intron 7 of 12)	-34947	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding
chipseq_peak_5075	chr15	45178080	45178595	+	0	NA	Intergenic	Intergenic	-63403	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding
chipseq_peak_3535	chr13	36704425	36704916	+	0	NA	Intergenic	Intergenic	29807	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding
chipseq_peak_3982	chr13	103921630	103922100	+	0	NA	Intergenic	Intergenic	-1279	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbb2ip	1700028E05Rik|Erbin|mKIAA1225	Erbb2 interacting protein	protein-coding
chipseq_peak_8609	chr3	38198606	38199128	+	0	NA	Intergenic	Intergenic	9252	NR_040541	71342	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA
chipseq_peak_5244	chr15	66343101	66344004	+	0	NA	Intergenic	Intergenic	-57328	NM_152923	110862	Mm.255585	NM_152923		Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding
chipseq_peak_5343	chr15	81336805	81337474	+	0	NA	intron (NM_011399, intron 4 of 8)	L1MB2|LINE|L1	23626	NM_011399	20524	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding
chipseq_peak_7837	chr2	65826224	65827234	+	0	NA	Intergenic	Intergenic	-19038	NM_153409	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding
chipseq_peak_13783	chr9	96822521	96823980	+	0	NA	TTS (NM_153420)	TTS (NM_153420)	57688	NR_102295	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA
chipseq_peak_13396	chr9	28396707	28398247	+	0	NA	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	606208	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_13662	chr9	68116445	68116797	+	0	NA	Intergenic	Intergenic	-90907	NR_045745	434412	Mm.490707	NR_045745		Gm20745	-	predicted gene, 20745	ncRNA
chipseq_peak_7135	chr19	22337362	22337827	+	0	NA	intron (NM_001035239, intron 1 of 24)	intron (NM_001035239, intron 1 of 24)	-110614	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding
chipseq_peak_6939	chr18	66868436	66869212	+	0	NA	Intergenic	Intergenic	-8337	NM_016977	17202	Mm.229447	NM_016977	ENSMUSG00000047259	Mc4r	Mc4-r	melanocortin 4 receptor	protein-coding
chipseq_peak_3061	chr12	62982555	62983421	+	0	NA	Intergenic	Intergenic	295201	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA
chipseq_peak_2916	chr12	44409707	44411244	+	0	NA	intron (NM_176930, intron 2 of 30)	intron (NM_176930, intron 2 of 30)	81590	NM_176930	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding
chipseq_peak_5236	chr15	65784357	65784717	+	0	NA	Intergenic	Intergenic	-2504	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
chipseq_peak_7461	chr2	12400645	12401768	+	0	NA	intron (NM_024185, intron 4 of 14)	intron (NM_024185, intron 4 of 14)	18254	NM_024185	66960	Mm.34059	NM_024185	ENSMUSG00000026767	Fam188a	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958	family with sequence similarity 188, member A	protein-coding
chipseq_peak_3152	chr12	74055565	74056043	+	0	NA	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	58043	NM_172804	238266	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding
chipseq_peak_2228	chr11	27089696	27090708	+	0	NA	Intergenic	Intergenic	305094	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_5281	chr15	68949809	68950431	+	0	NA	intron (NM_010158, intron 1 of 8)	C-rich|Low_complexity|Low_complexity	21700	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
chipseq_peak_8746	chr3	55315540	55316470	+	0	NA	intron (NM_019978, intron 3 of 16)	intron (NM_019978, intron 3 of 16)	73479	NM_001111053	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
chipseq_peak_6413	chr17	72015327	72015847	+	0	NA	intron (NM_007439, intron 5 of 28)	intron (NM_007439, intron 5 of 28)	233640	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding
chipseq_peak_10610	chr5	66889176	66889770	+	0	NA	intron (NM_001001980, intron 3 of 25)	intron (NM_001001980, intron 3 of 25)	-78943	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding
chipseq_peak_12827	chr8	48458366	48458675	+	0	NA	intron (NM_011857, intron 2 of 28)	intron (NM_011857, intron 2 of 28)	216170	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_13690	chr9	76762111	76762465	+	0	NA	Intergenic	Intergenic	-216484	NM_001045518	208994	Mm.256929	NM_001045518	ENSMUSG00000032358	Fam83b	C530008M07Rik|Gm516	family with sequence similarity 83, member B	protein-coding
chipseq_peak_5524	chr16	21333445	21334390	+	0	NA	promoter-TSS (NR_131983)	promoter-TSS (NR_131983)	-561	NR_131983	76222	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo
chipseq_peak_4899	chr15	22857641	22858007	+	0	NA	Intergenic	Intergenic	-142840	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding
chipseq_peak_12920	chr8	59084130	59084608	+	0	NA	Intergenic	Intergenic	172614	NM_173411	234290	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding
chipseq_peak_13442	chr9	34019539	34020102	+	0	NA	Intergenic	Intergenic	-22551	NR_040744	77119	Mm.367930	NR_040744	ENSMUSG00000098758	7630403G23Rik	-	RIKEN cDNA 7630403G23 gene	ncRNA
chipseq_peak_13793	chr9	97598274	97599660	+	0	NA	intron (NM_022319, intron 2 of 17)	(CA)n|Simple_repeat|Simple_repeat	-229009	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
chipseq_peak_12585	chr8	6645444	6646111	+	0	NA	Intergenic	Intergenic	-1540545	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_11537	chr6	58545882	58547142	+	0	NA	Intergenic	B3|SINE|B2	-50160	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding
chipseq_peak_6887	chr18	57452032	57452624	+	0	NA	Intergenic	Intergenic	-16158	NM_001134697	629147	Mm.57415	NM_001134697	ENSMUSG00000069372	Ctxn3	ENSMUSG00000069372	cortexin 3	protein-coding
chipseq_peak_3408	chr13	7923187	7923567	+	0	NA	Intergenic	Intergenic	-279489	NM_052977	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
chipseq_peak_2738	chr12	25097034	25098205	+	0	NA	Intergenic	Intergenic	-1527	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding
chipseq_peak_12133	chr7	55171713	55172444	+	0	NA	intron (NM_178705, intron 6 of 11)	intron (NM_178705, intron 6 of 11)	336833	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_5051	chr15	44423379	44423968	+	0	NA	intron (NM_001113554, intron 1 of 9)	intron (NM_001113554, intron 1 of 9)	-4438	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding
chipseq_peak_6480	chr17	83859276	83860087	+	0	NA	Intergenic	Charlie21a|DNA|hAT-Charlie	-12891	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
chipseq_peak_10422	chr5	40308391	40309293	+	0	NA	Intergenic	Intergenic	-664211	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_804	chr1	131881347	131881766	+	0	NA	Intergenic	Lx8|LINE|L1	14279	NM_144875	226422	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding
chipseq_peak_3136	chr12	71743289	71743890	+	0	NA	Intergenic	Intergenic	-87479	NM_026102	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding
chipseq_peak_5664	chr16	41997245	41997837	+	0	NA	intron (NM_175548, intron 3 of 5)	intron (NM_175548, intron 3 of 5)	305928	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
chipseq_peak_10665	chr5	72882275	72882679	+	0	NA	Intergenic	Intergenic	-14029	NM_001113464	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding
chipseq_peak_1881	chr10	101015408	101015815	+	0	NA	Intergenic	B3|SINE|B2	423225	NM_001081246	66605	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding
chipseq_peak_10563	chr5	62160420	62160958	+	0	NA	Intergenic	Intergenic	351846	NM_019468	14380	Mm.347430	NM_019468		G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding
chipseq_peak_11161	chr6	11353643	11354054	+	0	NA	Intergenic	Intergenic	-379470	NR_033776	57866	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA
chipseq_peak_6284	chr17	50640989	50642090	+	0	NA	intron (NM_013880, intron 4 of 5)	intron (NM_013880, intron 4 of 5)	-57142	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding
chipseq_peak_2462	chr11	83723901	83724231	+	0	NA	Intergenic	RLTR15|LTR|ERVK	15062	NM_007969	14038	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding
chipseq_peak_289	chr1	43347153	43347579	+	0	NA	Intergenic	Intergenic	-98385	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding
chipseq_peak_5025	chr15	42150339	42150913	+	0	NA	Intergenic	Intergenic	-280906	NM_175456	223513	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding
chipseq_peak_12771	chr8	40418054	40418366	+	0	NA	Intergenic	Intergenic	-5605	NM_178395	70546	Mm.34326	NM_178395		Zdhhc2	5730415P04Rik|6430583A19Rik	zinc finger, DHHC domain containing 2	protein-coding
chipseq_peak_7228	chr19	34832200	34832420	+	0	NA	intron (NM_023792, intron 2 of 6)	RCHARR1|DNA|hAT-Charlie	-11537	NR_029783	723826		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA
chipseq_peak_13297	chr9	9768880	9770887	+	0	NA	intron (NM_001170787, intron 16 of 24)	intron (NM_001170787, intron 16 of 24)	-124548	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_5443	chr15	98698178	98700369	+	0	NA	Intergenic	Intergenic	-8954	NM_153518	105833	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding
chipseq_peak_12209	chr7	72906202	72906678	+	0	NA	Intergenic	Intergenic	195628	NR_046024	625243	Mm.261798	NR_046024		Gm6567	-	predicted gene 6567	ncRNA
chipseq_peak_6248	chr17	42968090	42968745	+	0	NA	Intergenic	Intergenic	-48138	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding
chipseq_peak_8868	chr3	71605450	71606249	+	0	NA	Intergenic	Intergenic	-798558	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
chipseq_peak_100	chr1	22262445	22263507	+	0	NA	Intergenic	Intergenic	169867	NM_053270	116837	Mm.60061	NM_053270		Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding
chipseq_peak_6199	chr17	14747037	14747912	+	0	NA	Intergenic	L1MB4|LINE|L1	-53212	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding
chipseq_peak_1573	chr10	53464611	53464969	+	0	NA	Intergenic	Intergenic	54199	NR_037973	100502868	Mm.297722	NR_037973		Gm20597	B230314j19	predicted gene, 20597	ncRNA
chipseq_peak_12112	chr7	53017328	53018117	+	0	NA	Intergenic	Intergenic	874167	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
chipseq_peak_7368	chr2	5241422	5241964	+	0	NA	Intergenic	Intergenic	103917	NM_028804	74186	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding
chipseq_peak_10413	chr5	39771516	39772267	+	0	NA	Intergenic	Intergenic	-127260	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_9709	chr4	33520772	33521338	+	0	NA	Intergenic	Intergenic	82974	NR_106198	102465904		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA
chipseq_peak_12704	chr8	29073554	29074928	+	0	NA	intron (NM_153135, intron 1 of 17)	intron (NM_153135, intron 1 of 17)	145395	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_13553	chr9	51598662	51599841	+	0	NA	Intergenic	Intergenic	-166101	NM_175535	244867	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding
chipseq_peak_12974	chr8	67705946	67707840	+	0	NA	intron (NM_177698, intron 14 of 14)	intron (NM_177698, intron 14 of 14)	111402	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding
chipseq_peak_2090	chr10	125740602	125741515	+	0	NA	Intergenic	Intergenic	-225161	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
chipseq_peak_2837	chr12	35401258	35402254	+	0	NA	Intergenic	Intergenic	133233	NM_013464	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding
chipseq_peak_3371	chr12	119838940	119839677	+	0	NA	Intergenic	Intergenic	-106654	NM_001160385	217951	Mm.387395	NM_001160385		Tmem196	Gm528	transmembrane protein 196	protein-coding
chipseq_peak_13830	chr9	103700010	103700588	+	0	NA	intron (NM_178638, intron 2 of 5)	L1ME3Cz|LINE|L1	61538	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding
chipseq_peak_703	chr1	109512655	109513521	+	0	NA	Intergenic	Intergenic	-469812	NM_001316743	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding
chipseq_peak_9880	chr4	71553384	71554227	+	0	NA	Intergenic	Intergenic	647088	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_4713	chr14	117246157	117247139	+	0	NA	intron (NM_011821, intron 2 of 8)	intron (NM_011821, intron 2 of 8)	321351	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_12232	chr7	75208070	75209709	+	0	NA	intron (NM_153579, intron 1 of 12)	Lx|LINE|L1	99497	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding
chipseq_peak_10573	chr5	62812659	62814457	+	0	NA	promoter-TSS (NM_001170705)	promoter-TSS (NM_001170705)	-265	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding
chipseq_peak_1168	chr1	187795784	187797130	+	0	NA	intron (NM_001243792, intron 2 of 7)	intron (NM_001243792, intron 2 of 7)	187451	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding
chipseq_peak_6376	chr17	66943374	66943754	+	0	NA	intron (NM_008984, intron 10 of 30)	intron (NM_008984, intron 10 of 30)	82671	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA
chipseq_peak_4154	chr14	13593483	13593956	+	0	NA	intron (NM_001163032, intron 3 of 4)	intron (NM_001163032, intron 3 of 4)	-77157	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding
chipseq_peak_12620	chr8	9929712	9930702	+	0	NA	Intergenic	Intergenic	46116	NM_176953	319583	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding
chipseq_peak_3235	chr12	83372313	83372966	+	0	NA	intron (NM_001267625, intron 1 of 10)	L1MB3|LINE|L1	115097	NM_001267625	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding
chipseq_peak_5319	chr15	73438013	73438858	+	0	NA	Intergenic	Intergenic	-15244	NM_007982	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding
chipseq_peak_13836	chr9	103848750	103849614	+	0	NA	Intergenic	Intergenic	-87345	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding
chipseq_peak_11862	chr6	113848340	113849150	+	0	NA	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	42631	NM_001036684	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding
chipseq_peak_4817	chr15	13655036	13655490	+	0	NA	Intergenic	Intergenic	-481588	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_13760	chr9	92770887	92771642	+	0	NA	intron (NR_040770, intron 1 of 4)	intron (NR_040770, intron 1 of 4)	52548	NR_040770	331003	Mm.50805	NR_040770	ENSMUSG00000101734	4933400C23Rik	4933400C23	RIKEN cDNA 4933400C23 gene	ncRNA
chipseq_peak_11513	chr6	54757902	54758609	+	0	NA	Intergenic	Intergenic	-58661	NM_199143	387524	Mm.286149	NM_199143		Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding
chipseq_peak_5326	chr15	77153768	77154197	+	0	NA	promoter-TSS (NM_001110828)	promoter-TSS (NM_001110828)	-170	NM_001286419	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding
chipseq_peak_2608	chr11	113205991	113206347	+	0	NA	intron (NR_040276, intron 3 of 3)	intron (NR_040276, intron 3 of 3)	3500	NR_040276	319871	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA
chipseq_peak_6122	chr16	95092663	95093195	+	0	NA	Intergenic	Intergenic	-95233	NM_001025585	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
chipseq_peak_1267	chr10	11005651	11006160	+	0	NA	intron (NM_016976, intron 2 of 8)	intron (NM_016976, intron 2 of 8)	76426	NM_001114333	14816	Mm.391904	NM_016976	ENSMUSG00000019828	Grm1	4930455H15Rik|ENSMUSG00000075319|Gm10828|Gprc1a|mGluR1|nmf373|rcw|wobl	glutamate receptor, metabotropic 1	protein-coding
chipseq_peak_12419	chr7	101515158	101516240	+	0	NA	Intergenic	B1F|SINE|Alu	40103	NM_007490	11871	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding
chipseq_peak_7169	chr19	26447503	26448065	+	0	NA	Intergenic	Intergenic	-157376	NM_011416	67155	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
chipseq_peak_11823	chr6	108149087	108149675	+	0	NA	intron (NM_145937, intron 6 of 8)	intron (NM_145937, intron 6 of 8)	36202	NM_145937	58911	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding
chipseq_peak_9006	chr3	86085611	86086561	+	0	NA	intron (NM_001082414, intron 1 of 14)	intron (NM_001082414, intron 1 of 14)	1652	NM_001082414	27059	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding
chipseq_peak_11036	chr5	132202372	132202759	+	0	NA	intron (NM_177047, intron 2 of 18)	intron (NM_177047, intron 2 of 18)	322296	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_14053	chrX	92590369	92590762	+	0	NA	intron (NM_173783, intron 1 of 4)	intron (NM_173783, intron 1 of 4)	9007	NM_173783	215641	Mm.327999	NM_173783	ENSMUSG00000067649	Mageb18	B430216B18Rik	melanoma antigen family B, 18	protein-coding
chipseq_peak_3609	chr13	46574538	46575424	+	0	NA	intron (NM_026056, intron 4 of 12)	intron (NM_026056, intron 4 of 12)	73078	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding
chipseq_peak_6188	chr17	11162726	11163123	+	0	NA	intron (NM_016694, intron 2 of 11)	intron (NM_016694, intron 2 of 11)	322540	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding
chipseq_peak_9241	chr3	133751501	133752050	+	0	NA	Intergenic	Intergenic	-207385	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding
chipseq_peak_2717	chr12	14811064	14811557	+	0	NA	Intergenic	Intergenic	239079	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
chipseq_peak_541	chr1	77567372	77569111	+	0	NA	Intergenic	Intergenic	-53153	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding
chipseq_peak_12207	chr7	72793105	72793703	+	0	NA	Intergenic	Intergenic	308664	NR_046024	625243	Mm.261798	NR_046024		Gm6567	-	predicted gene 6567	ncRNA
chipseq_peak_2486	chr11	87422388	87423426	+	0	NA	intron (NM_031386, intron 1 of 30)	U1|snRNA|snRNA	-4684	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding
chipseq_peak_8881	chr3	75179907	75180384	+	0	NA	Intergenic	Intergenic	-36373	NM_001310529	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding
chipseq_peak_226	chr1	38294929	38296327	+	0	NA	intron (NM_001290814, intron 8 of 21)	intron (NM_001290814, intron 8 of 21)	-165966	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1 homolog (S. cerevisiae)	protein-coding
chipseq_peak_5175	chr15	58769945	58770293	+	0	NA	Intergenic	Intergenic	53308	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding
chipseq_peak_484	chr1	70350990	70351908	+	0	NA	intron (NM_029160, intron 13 of 16)	intron (NM_029160, intron 13 of 16)	-374266	NM_177164	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_13490	chr9	42173789	42174070	+	0	NA	Intergenic	Intergenic	35302	NR_040754	78194	Mm.251457	NR_040754		4930546K05Rik	-	RIKEN cDNA 4930546K05 gene	ncRNA
chipseq_peak_8548	chr3	27593162	27593945	+	0	NA	intron (NM_173182, intron 3 of 25)	intron (NM_173182, intron 3 of 25)	-8558	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA
chipseq_peak_3646	chr13	56697409	56699041	+	0	NA	Intergenic	MIR|SINE|MIR	-4785	NM_008541	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding
chipseq_peak_5109	chr15	50973742	50974416	+	0	NA	Intergenic	Intergenic	-84038	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_4701	chr14	115821062	115822126	+	0	NA	intron (NM_175500, intron 7 of 7)	intron (NM_175500, intron 7 of 7)	-412042	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA
chipseq_peak_1453	chr10	36554748	36555244	+	0	NA	intron (NM_001253355, intron 2 of 5)	intron (NM_001253355, intron 2 of 5)	48189	NM_001081208	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chipseq_peak_13592	chr9	57918545	57919132	+	0	NA	intron (NM_027086, intron 3 of 10)	L1ME4c|LINE|L1	7852	NM_027086	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding
chipseq_peak_8276	chr2	142221994	142222799	+	0	NA	intron (NM_001013802, intron 11 of 18)	intron (NM_001013802, intron 11 of 18)	679068	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_12007	chr6	146281309	146282528	+	0	NA	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	220305	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding
chipseq_peak_4649	chr14	109708709	109709168	+	0	NA	Intergenic	Intergenic	248708	NR_039542	100628607		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA
chipseq_peak_1533	chr10	47278903	47279311	+	0	NA	Intergenic	Intergenic	1034358	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA
chipseq_peak_13342	chr9	22636765	22637373	+	0	NA	intron (NM_181316, intron 11 of 21)	intron (NM_181316, intron 11 of 21)	161354	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding
chipseq_peak_11201	chr6	13839316	13840174	+	0	NA	5' UTR (NM_145066, exon 1 of 4)	5' UTR (NM_145066, exon 1 of 4)	103	NM_145066	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding
chipseq_peak_2786	chr12	29639562	29639920	+	0	NA	intron (NM_008666, intron 2 of 24)	intron (NM_008666, intron 2 of 24)	46704	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA
chipseq_peak_9233	chr3	130955943	130956428	+	0	NA	Intergenic	Intergenic	-154112	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding
chipseq_peak_726	chr1	115851358	115852793	+	0	NA	intron (NM_001077425, intron 1 of 23)	intron (NM_001077425, intron 1 of 23)	166938	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_8748	chr3	55373484	55374320	+	0	NA	intron (NM_019978, intron 3 of 16)	intron (NM_019978, intron 3 of 16)	-87856	NM_001111051	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
chipseq_peak_2669	chr12	7505710	7506084	+	0	NA	Intergenic	Intergenic	-125567	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_3296	chr12	96872708	96873031	+	0	NA	Intergenic	Intergenic	-825647	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo
chipseq_peak_13395	chr9	28386244	28387201	+	0	NA	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	595453	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_10474	chr5	47820781	47821318	+	0	NA	Intergenic	X3_LINE|LINE|RTE-BovB	-162106	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
chipseq_peak_5894	chr16	67968343	67969368	+	0	NA	Intergenic	Intergenic	-347947	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_4374	chr14	66402065	66402671	+	0	NA	Intergenic	Intergenic	58072	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding
chipseq_peak_7872	chr2	69135867	69136528	+	0	NA	intron (NM_181547, intron 1 of 15)	intron (NM_181547, intron 1 of 15)	397	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding
chipseq_peak_10131	chr4	110249321	110249853	+	0	NA	intron (NM_001163399, intron 2 of 6)	intron (NM_001163399, intron 2 of 6)	37247	NM_001163399	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding
chipseq_peak_13217	chr8	115428888	115429313	+	0	NA	Intergenic	Intergenic	277794	NM_001025577	17132	Mm.275549	NM_001025577		Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog	protein-coding
chipseq_peak_12793	chr8	43956388	43957116	+	0	NA	Intergenic	Intergenic	-257261	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding
chipseq_peak_9184	chr3	122814597	122814890	+	0	NA	intron (NM_153422, intron 11 of 20)	intron (NM_153422, intron 11 of 20)	-12763	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA
chipseq_peak_1390	chr10	27508515	27509475	+	0	NA	intron (NM_008481, intron 1 of 63)	intron (NM_008481, intron 1 of 63)	107947	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding
chipseq_peak_12810	chr8	45635207	45635784	+	0	NA	intron (NM_001310707, intron 1 of 23)	intron (NM_001310707, intron 1 of 23)	7744	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777	sorbin and SH3 domain containing 2	protein-coding
chipseq_peak_9038	chr3	101343633	101345210	+	0	NA	Intergenic	Intergenic	-32704	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding
chipseq_peak_3116	chr12	70038461	70041339	+	0	NA	intron (NM_001286080, intron 20 of 29)	intron (NM_001286080, intron 20 of 29)	-52898	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador homolog 1 (Drosophila)	protein-coding
chipseq_peak_2353	chr11	52591788	52592087	+	0	NA	Intergenic	Intergenic	-172769	NM_177059	320027	Mm.44518	NM_177059		Fstl4	B230374F23Rik|SPIG1|mKIAA1061	follistatin-like 4	protein-coding
chipseq_peak_13246	chr8	125218274	125219078	+	0	NA	intron (NM_174853, intron 9 of 11)	intron (NM_174853, intron 9 of 11)	164481	NM_174853	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding
chipseq_peak_4977	chr15	32946952	32947435	+	0	NA	intron (NM_008304, intron 1 of 4)	intron (NM_008304, intron 1 of 4)	26470	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding
chipseq_peak_4835	chr15	16923035	16924582	+	0	NA	Intergenic	Intergenic	145707	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_3477	chr13	23526148	23527219	+	0	NA	Intergenic	Intergenic	-4361	NM_153173	69386	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding
chipseq_peak_3182	chr12	75596353	75598326	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-1139	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding
chipseq_peak_1882	chr10	101288082	101288566	+	0	NA	Intergenic	Intergenic	-393163	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
chipseq_peak_515	chr1	72306655	72307164	+	0	NA	promoter-TSS (NM_009533)	promoter-TSS (NM_009533)	-512	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding
chipseq_peak_12461	chr7	115966134	115966536	+	0	NA	intron (NM_001025559, intron 1 of 15)	intron (NM_001025559, intron 1 of 15)	28751	NM_011445	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding
chipseq_peak_2673	chr12	7870009	7870436	+	0	NA	Intergenic	Intergenic	-107455	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding
chipseq_peak_13556	chr9	51985577	51986163	+	0	NA	Intergenic	Intergenic	-22268	NM_001301728	14148	Mm.1061	NM_007996		Fdx1	-	ferredoxin 1	protein-coding
chipseq_peak_12587	chr8	6707911	6710242	+	0	NA	Intergenic	L2a|LINE|L2	-1603844	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_4711	chr14	117155978	117156519	+	0	NA	intron (NM_011821, intron 1 of 8)	intron (NM_011821, intron 1 of 8)	230951	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_10481	chr5	49304508	49304917	+	0	NA	Intergenic	Intergenic	-19053	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
chipseq_peak_10391	chr5	35170282	35170802	+	0	NA	Intergenic	Intergenic	-64845	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
chipseq_peak_9560	chr4	17258985	17259653	+	0	NA	Intergenic	Intergenic	-594163	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_610	chr1	93656267	93656635	+	0	NA	Intergenic	Intergenic	-20724	NM_021537	59041	Mm.28761	NM_021537		Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding
chipseq_peak_368	chr1	55983504	55984248	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-35102	NR_126076	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_8376	chr2	165656559	165657184	+	0	NA	intron (NM_010165, intron 1 of 15)	intron (NM_010165, intron 1 of 15)	1573	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	eyes absent 2 homolog (Drosophila)	protein-coding
chipseq_peak_2605	chr11	112121165	112122279	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	589634	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA
chipseq_peak_10273	chr5	10648201	10648633	+	0	NA	Intergenic	Intergenic	-216612	NR_003596	623849	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo
chipseq_peak_995	chr1	163255796	163256370	+	0	NA	3' UTR (NM_001025570, exon 3 of 3)	3' UTR (NM_001025570, exon 3 of 3)	57567	NM_001025570	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding
chipseq_peak_4241	chr14	33531313	33531768	+	0	NA	Intergenic	Charlie20a|DNA|hAT-Charlie	-57730	NM_008978	19256	Mm.8019	NM_008978	ENSMUSG00000021940	Ptpn20	typ	protein tyrosine phosphatase, non-receptor type 20	protein-coding
chipseq_peak_9993	chr4	85260861	85262506	+	0	NA	intron (NM_019535, intron 1 of 8)	intron (NM_019535, intron 1 of 8)	56227	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding
chipseq_peak_6438	chr17	76327349	76327782	+	0	NA	Intergenic	Intergenic	466542	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
chipseq_peak_4549	chr14	93621111	93621760	+	0	NA	intron (NM_001081377, intron 1 of 3)	intron (NM_001081377, intron 1 of 3)	267453	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_8547	chr3	26874737	26875094	+	0	NA	intron (NM_029150, intron 5 of 10)	intron (NM_029150, intron 5 of 10)	237284	NM_029150	70862	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding
chipseq_peak_13681	chr9	73520920	73521210	+	0	NA	intron (NM_001081153, intron 27 of 30)	intron (NM_001081153, intron 27 of 30)	407596	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding
chipseq_peak_7205	chr19	29608142	29608441	+	0	NA	Intergenic	L1M4|LINE|L1	40129	NM_001081213	226090	Mm.267131	NM_146098		Ermp1	D19Ertd410e|D19Wsu12e|Fxna|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding
chipseq_peak_12667	chr8	17015110	17015801	+	0	NA	intron (NM_053171, intron 3 of 69)	intron (NM_053171, intron 3 of 69)	519930	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
chipseq_peak_10336	chr5	19186244	19186579	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	40144	NR_102342	70832	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA
chipseq_peak_5083	chr15	46838195	46838771	+	0	NA	Intergenic	Intergenic	215178	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA
chipseq_peak_5440	chr15	97606348	97607998	+	0	NA	Intergenic	Intergenic	98649	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding
chipseq_peak_7895	chr2	74134939	74135546	+	0	NA	Intergenic	Intergenic	172475	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA
chipseq_peak_2992	chr12	52771772	52772276	+	0	NA	intron (NM_198111, intron 1 of 13)	Zaphod3|DNA|hAT-Tip100	72641	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding
chipseq_peak_7308	chr19	54838243	54838982	+	0	NA	Intergenic	Intergenic	260835	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
chipseq_peak_7823	chr2	63212343	63213437	+	0	NA	Intergenic	Intergenic	-28603	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
chipseq_peak_210	chr1	34779393	34780001	+	0	NA	Intergenic	RMER5|LTR|ERV1	-22025	NM_183019	226970	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef|ENSMUSG00000070955	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding
chipseq_peak_8963	chr3	82114199	82114626	+	0	NA	intron (NM_021896, intron 2 of 8)	intron (NM_021896, intron 2 of 8)	-8103	NR_105977	102466991		NR_105977	ENSMUSG00000098712	Mir7010	Gm28029|mmu-mir-7010	microRNA 7010	ncRNA
chipseq_peak_5445	chr15	98969045	98971483	+	0	NA	Intergenic	Intergenic	-15701	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA
chipseq_peak_12376	chr7	94687997	94688207	+	0	NA	Intergenic	Intergenic	-1483142	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
chipseq_peak_10496	chr5	51811806	51812075	+	0	NA	Intergenic	Intergenic	-244215	NR_132764	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding
chipseq_peak_13269	chr8	128296685	128297677	+	0	NA	Intergenic	Intergenic	-18956	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA
chipseq_peak_11153	chr6	8430595	8431099	+	0	NA	Intergenic	Intergenic	78314	NR_040452	320312	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA
chipseq_peak_12516	chr7	127470862	127471605	+	0	NA	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-381	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding
chipseq_peak_12865	chr8	54503034	54503594	+	0	NA	Intergenic	L1_Mur3|LINE|L1	26684	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding
chipseq_peak_48	chr1	15578370	15578724	+	0	NA	intron (NM_001098528, intron 1 of 1)	intron (NM_001098528, intron 1 of 1)	-227099	NM_001286628	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding
chipseq_peak_11103	chr5	146625734	146626380	+	0	NA	Intergenic	Intergenic	-40818	NM_001010941	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding
chipseq_peak_1010	chr1	165559004	165559450	+	0	NA	exon (NM_173029, exon 25 of 34)	exon (NM_173029, exon 25 of 34)	74044	NM_173029	271639	Mm.66952	NM_173029	ENSMUSG00000026567	Adcy10	4930431D04Rik|4931412F17|Sacy|sAC	adenylate cyclase 10	protein-coding
chipseq_peak_905	chr1	147143806	147144331	+	0	NA	Intergenic	Intergenic	646381	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_1871	chr10	100096690	100098402	+	0	NA	3' UTR (NM_013598, exon 10 of 10)	3' UTR (NM_013598, exon 10 of 10)	81722	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding
chipseq_peak_6641	chr18	22248258	22249193	+	0	NA	Intergenic	Intergenic	-77329	NM_027616	70950	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding
chipseq_peak_3564	chr13	42996209	42996665	+	0	NA	intron (NM_001302635, intron 4 of 13)	intron (NM_001302635, intron 4 of 13)	-126402	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_7157	chr19	24058694	24059159	+	0	NA	Intergenic	Intergenic	-27907	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding
chipseq_peak_13454	chr9	37623849	37626071	+	0	NA	intron (NM_011734, intron 3 of 9)	intron (NM_011734, intron 3 of 9)	11113	NM_011734	22619	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding
chipseq_peak_12329	chr7	91412125	91413136	+	0	NA	intron (NM_011807, intron 1 of 22)	(AAATG)n|Simple_repeat|Simple_repeat	321844	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_6575	chr18	10591270	10591773	+	0	NA	intron (NM_001081222, intron 3 of 10)	L1ME3B|LINE|L1	18831	NM_001081222	77805	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of cohesion 1 homolog 1 (S. cerevisiae)	protein-coding
chipseq_peak_12621	chr8	9936242	9936835	+	0	NA	Intergenic	Intergenic	39785	NM_176953	319583	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding
chipseq_peak_7697	chr2	50667020	50667598	+	0	NA	Intergenic	Intergenic	-242375	NR_033595	227885	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	OTTMUSG00000012426	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo
chipseq_peak_5073	chr15	45101791	45102440	+	0	NA	Intergenic	Intergenic	12819	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding
chipseq_peak_2306	chr11	41652414	41652929	+	0	NA	Intergenic	MER70A|LTR|ERVL	348043	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding
chipseq_peak_1588	chr10	55112186	55112954	+	0	NA	Intergenic	Intergenic	-994347	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding
chipseq_peak_3919	chr13	96855261	96855548	+	0	NA	Intergenic	B3|SINE|B2	-69285	NM_001166065	218476	Mm.483490	NM_001166065	ENSMUSG00000091387	Gcnt4	C2gnt3|Gm279|Gm73	glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	protein-coding
chipseq_peak_1395	chr10	28000968	28001693	+	0	NA	Intergenic	Intergenic	-73490	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding
chipseq_peak_8518	chr3	21564219	21564821	+	0	NA	Intergenic	Intergenic	-512132	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
chipseq_peak_12755	chr8	38620546	38620878	+	0	NA	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	40796	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding
chipseq_peak_12762	chr8	39290367	39290685	+	0	NA	Intergenic	Intergenic	-7454	NR_044988	621335	Mm.208080	NR_044988		Gm6213	EG621335	predicted gene 6213	ncRNA
chipseq_peak_5846	chr16	63873670	63874154	+	0	NA	Intergenic	Intergenic	-9755	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_11552	chr6	61540633	61541186	+	0	NA	intron (NM_001164316, intron 5 of 10)	intron (NM_001164316, intron 5 of 10)	-360099	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
chipseq_peak_364	chr1	55947537	55948382	+	0	NA	intron (NR_045837, intron 2 of 5)	intron (NR_045837, intron 2 of 5)	16718	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
chipseq_peak_12283	chr7	87110600	87110968	+	0	NA	Intergenic	Intergenic	114319	NM_001105190	621430	Mm.469903	NM_001105190	ENSMUSG00000090362	Vmn2r79	EG621430	vomeronasal 2, receptor 79	protein-coding
chipseq_peak_11293	chr6	24468935	24470706	+	0	NA	intron (NM_172535, intron 8 of 12)	intron (NM_172535, intron 8 of 12)	45247	NM_172535	214704	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding
chipseq_peak_1317	chr10	18529768	18530654	+	0	NA	intron (NM_001163592, intron 7 of 7)	intron (NM_001163592, intron 7 of 7)	15865	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding
chipseq_peak_6378	chr17	67136568	67136925	+	0	NA	intron (NM_008984, intron 2 of 30)	intron (NM_008984, intron 2 of 30)	-110511	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA
chipseq_peak_4638	chr14	108323522	108323915	+	0	NA	Intergenic	Intergenic	590521	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_4690	chr14	115070531	115070973	+	0	NA	Intergenic	Intergenic	-21463	NM_175500	103978	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding
chipseq_peak_8972	chr3	82405929	82407227	+	0	NA	Intergenic	Intergenic	48506	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding
chipseq_peak_2861	chr12	37821226	37821825	+	0	NA	Intergenic	Intergenic	-59180	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding
chipseq_peak_7018	chr18	78428880	78429464	+	0	NA	intron (NM_207651, intron 2 of 21)	intron (NM_207651, intron 2 of 21)	167778	NM_030683	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
chipseq_peak_6690	chr18	29321413	29321906	+	0	NA	Intergenic	Intergenic	-120541	NR_045395	78199	Mm.243850	NR_045395		4930527G23Rik	-	RIKEN cDNA 4930527G23 gene	ncRNA
chipseq_peak_1989	chr10	111108711	111109080	+	0	NA	Intergenic	Intergenic	-55907	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding
chipseq_peak_10080	chr4	102238580	102241145	+	0	NA	Intergenic	Intergenic	-14880	NM_001177983	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding
chipseq_peak_14023	chrX	66864787	66865546	+	0	NA	Intergenic	Intergenic	-26041	NR_030149	723888		NR_030149	ENSMUSG00000070071	Mir465	Mirn465|mir-465a|mmu-mir-465	microRNA 465	ncRNA
chipseq_peak_13403	chr9	28736449	28736794	+	0	NA	intron (NM_177906, intron 3 of 7)	intron (NM_177906, intron 3 of 7)	945352	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_3612	chr13	46654577	46655008	+	0	NA	Intergenic	Intergenic	-14730	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding
chipseq_peak_7171	chr19	26588590	26589090	+	0	NA	Intergenic	Intergenic	-16320	NM_011416	67155	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
chipseq_peak_10209	chr4	141949469	141949979	+	0	NA	intron (NM_177868, intron 13 of 31)	intron (NM_177868, intron 13 of 31)	-33268	NR_040672	545691	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037|OTTMUSG00000010113	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA
chipseq_peak_10008	chr4	87024583	87024976	+	0	NA	intron (NM_172426, intron 7 of 10)	intron (NM_172426, intron 7 of 10)	150365	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding
chipseq_peak_5867	chr16	65575621	65576181	+	0	NA	Intergenic	Intergenic	-13204	NM_026879	68942	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding
chipseq_peak_5883	chr16	67457913	67458703	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	162600	NM_001145977	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_9954	chr4	79669851	79671520	+	0	NA	Intergenic	Intergenic	1076638	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_11193	chr6	13523713	13524357	+	0	NA	Intergenic	Intergenic	84028	NM_028990	101118	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding
chipseq_peak_5486	chr16	6664052	6664470	+	0	NA	intron (NM_021477, intron 4 of 16)	intron (NM_021477, intron 4 of 16)	-405574	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_3892	chr13	93006338	93007814	+	0	NA	Intergenic	B3|SINE|B2	-66228	NR_036451	100502942	Mm.441946	NM_177623		Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA
chipseq_peak_8520	chr3	21935466	21936325	+	0	NA	Intergenic	Intergenic	-140757	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
chipseq_peak_4004	chr13	107221615	107222042	+	0	NA	Intergenic	Intergenic	199258	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA
chipseq_peak_6614	chr18	19549791	19550466	+	0	NA	Intergenic	Intergenic	451969	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_13547	chr9	51360269	51361596	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-32015	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding
chipseq_peak_14017	chrX	65285697	65286446	+	0	NA	Intergenic	L1M3|LINE|L1	238427	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding
chipseq_peak_13583	chr9	56308470	56309764	+	0	NA	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	108933	NM_172924	244895	Mm.490331	NM_172924		Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding
chipseq_peak_1597	chr10	57322808	57323315	+	0	NA	Intergenic	Intergenic	163292	NR_045353	74928	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA
chipseq_peak_3819	chr13	84221423	84222877	+	0	NA	promoter-TSS (NM_175187)	promoter-TSS (NM_175187)	-146	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
chipseq_peak_2217	chr11	26591306	26591856	+	0	NA	intron (NM_001252447, intron 2 of 11)	intron (NM_001252447, intron 2 of 11)	2339	NM_001252447	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding
chipseq_peak_11876	chr6	116054713	116055229	+	0	NA	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-59966	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding
chipseq_peak_4282	chr14	47668121	47668541	+	0	NA	intron (NM_001293635, intron 3 of 40)	intron (NM_001293635, intron 3 of 40)	4575	NM_008477	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding
chipseq_peak_9674	chr4	31076309	31076632	+	0	NA	Intergenic	Intergenic	411874	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
chipseq_peak_2299	chr11	40865732	40866327	+	0	NA	Intergenic	Intergenic	-110743	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding
chipseq_peak_8909	chr3	79023824	79024320	+	0	NA	Intergenic	Intergenic	120815	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_5928	chr16	72285585	72286368	+	0	NA	Intergenic	Intergenic	-51649	NR_131115	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA
chipseq_peak_13515	chr9	47923799	47924335	+	0	NA	Intergenic	Intergenic	-105859	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA
chipseq_peak_12979	chr8	68152148	68153871	+	0	NA	Intergenic	L1MC2|LINE|L1	-123519	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding
chipseq_peak_11563	chr6	63380994	63381378	+	0	NA	intron (NM_008167, intron 1 of 15)	intron (NM_008167, intron 1 of 15)	124329	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
chipseq_peak_11591	chr6	74877725	74878183	+	0	NA	Intergenic	L1_Rod|LINE|L1	-1406933	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA
chipseq_peak_4669	chr14	112464914	112466973	+	0	NA	Intergenic	MER89-int|LTR|ERV1	444513	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
chipseq_peak_5946	chr16	72967254	72968161	+	0	NA	intron (NM_019413, intron 8 of 28)	intron (NM_019413, intron 8 of 28)	304558	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_1273	chr10	12468786	12469411	+	0	NA	intron (NM_011682, intron 57 of 73)	intron (NM_011682, intron 57 of 73)	392637	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding
chipseq_peak_4056	chr13	110266050	110266607	+	0	NA	intron (NM_023852, intron 1 of 4)	Lx|LINE|L1	13878	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding
chipseq_peak_5416	chr15	94930629	94931121	+	0	NA	intron (NM_178789, intron 4 of 7)	intron (NM_178789, intron 4 of 7)	218443	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_3253	chr12	89382873	89383526	+	0	NA	intron (NM_172544, intron 8 of 19)	intron (NM_172544, intron 8 of 19)	-429284	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
chipseq_peak_8167	chr2	129987540	129988202	+	0	NA	Intergenic	L1M2|LINE|L1	-24469	NM_009374	21818	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3	transglutaminase 3, E polypeptide	protein-coding
chipseq_peak_10365	chr5	23899297	23900556	+	0	NA	intron (NR_037304, intron 2 of 4)	L1M5|LINE|L1	47693	NR_028536	100217436		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA
chipseq_peak_7718	chr2	53803596	53804165	+	0	NA	Intergenic	L1_Mur2|LINE|L1	281672	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
chipseq_peak_10114	chr4	105029482	105032196	+	0	NA	3' UTR (NM_178143, exon 9 of 9)	3' UTR (NM_178143, exon 9 of 9)	79059	NM_178143	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding
chipseq_peak_7900	chr2	75407506	75407988	+	0	NA	Intergenic	B4A|SINE|B4	36432	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA
chipseq_peak_1271	chr10	11890252	11890976	+	0	NA	Intergenic	L1M5|LINE|L1	281390	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding
chipseq_peak_5914	chr16	70834832	70835784	+	0	NA	Intergenic	Intergenic	218883	NR_040474	52645	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA
chipseq_peak_7098	chr19	17785573	17786050	+	0	NA	intron (NM_001190483, intron 2 of 37)	intron (NM_001190483, intron 2 of 37)	51821	NM_001163144	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding
chipseq_peak_1029	chr1	169027119	169029033	+	0	NA	Intergenic	Intergenic	503388	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
chipseq_peak_6972	chr18	69387190	69387775	+	0	NA	intron (NM_001083967, intron 3 of 19)	intron (NM_001083967, intron 3 of 19)	41761	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
chipseq_peak_1012	chr1	165966928	165967305	+	0	NA	intron (NM_011137, intron 1 of 16)	intron (NM_011137, intron 1 of 16)	-32168	NM_198933	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding
chipseq_peak_3849	chr13	89007744	89008399	+	0	NA	intron (NM_001037987, intron 3 of 10)	intron (NM_001037987, intron 3 of 10)	186599	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding
chipseq_peak_9259	chr3	136828513	136829005	+	0	NA	intron (NM_001293622, intron 2 of 12)	intron (NM_001293622, intron 2 of 12)	158693	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding
chipseq_peak_10685	chr5	76669981	76670568	+	0	NA	Intergenic	Intergenic	78560	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding
chipseq_peak_4178	chr14	19949116	19950048	+	0	NA	intron (NM_001285909, intron 3 of 5)	intron (NM_001285909, intron 3 of 5)	27111	NM_001285911	14702	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding
chipseq_peak_12662	chr8	16353381	16354009	+	0	NA	intron (NM_053171, intron 9 of 69)	intron (NM_053171, intron 9 of 69)	-184857	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_4627	chr14	106581813	106582208	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	-95490	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
chipseq_peak_787	chr1	129180276	129180931	+	0	NA	Intergenic	Intergenic	-92701	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding
chipseq_peak_7480	chr2	15715092	15715613	+	0	NA	intron (NM_001310455, intron 17 of 38)	intron (NM_001310455, intron 17 of 38)	188873	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding
chipseq_peak_4475	chr14	82148774	82149527	+	0	NA	Intergenic	Intergenic	2148848	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_2187	chr11	24161657	24162504	+	0	NA	intron (NM_016707, intron 3 of 4)	intron (NM_016707, intron 3 of 4)	81385	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding
chipseq_peak_6351	chr17	63208933	63211595	+	0	NA	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	102709	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA
chipseq_peak_13151	chr8	103339068	103339388	+	0	NA	Intergenic	Intergenic	8306	NR_036588	69794	Mm.396139	NR_036588		1600027J07Rik	-	RIKEN cDNA 1600027J07 gene	ncRNA
chipseq_peak_20	chr1	8582759	8583849	+	0	NA	exon (NM_027671, exon 14 of 21)	exon (NM_027671, exon 14 of 21)	716573	NM_001290393	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
chipseq_peak_12056	chr7	35590598	35591250	+	0	NA	intron (NM_145633, intron 1 of 28)	L1M5|LINE|L1	4677	NM_145633	245886	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding
chipseq_peak_2852	chr12	37057139	37057942	+	0	NA	Intergenic	Intergenic	-51006	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding
chipseq_peak_5541	chr16	24958805	24959244	+	0	NA	intron (NM_001145952, intron 9 of 11)	L3|LINE|CR1	-100615	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA
chipseq_peak_12307	chr7	90028938	90029912	+	0	NA	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	266	NR_110364	319711	Mm.31753	NR_015614		E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA
chipseq_peak_14091	chrX	141848410	141848736	+	0	NA	Intergenic	Intergenic	-123356	NM_010572	16370	Mm.261591	NM_010572	ENSMUSG00000054667	Irs4	IRS-4	insulin receptor substrate 4	protein-coding
chipseq_peak_2481	chr11	86472853	86473423	+	0	NA	intron (NR_030571, intron 1 of 2)	intron (NR_030571, intron 1 of 2)	-11519	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding
chipseq_peak_482	chr1	70133220	70133803	+	0	NA	intron (NM_029160, intron 11 of 16)	intron (NM_029160, intron 11 of 16)	181896	NM_025728	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding
chipseq_peak_5377	chr15	90770585	90771490	+	0	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	-91649	NM_001033851	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
chipseq_peak_728	chr1	116035770	116036680	+	0	NA	intron (NM_001077425, intron 3 of 23)	intron (NM_001077425, intron 3 of 23)	351088	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_7870	chr2	68285791	68286612	+	0	NA	intron (NM_016866, intron 14 of 17)	intron (NM_016866, intron 14 of 17)	181529	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding
chipseq_peak_3026	chr12	58632165	58633353	+	0	NA	Intergenic	Intergenic	-363501	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
chipseq_peak_11546	chr6	60717629	60718112	+	0	NA	Intergenic	Intergenic	111134	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding
chipseq_peak_9630	chr4	25414009	25415105	+	0	NA	Intergenic	Intergenic	-132736	NM_026194	67490	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding
chipseq_peak_8510	chr3	21020548	21021489	+	0	NA	Intergenic	Intergenic	-653841	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
chipseq_peak_2840	chr12	35846842	35847681	+	0	NA	Intergenic	Intergenic	-78360	NM_207531	403205	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding
chipseq_peak_13045	chr8	86024624	86025897	+	0	NA	intron (NM_199446, intron 25 of 31)	intron (NM_199446, intron 25 of 31)	184258	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding
chipseq_peak_13028	chr8	81776836	81777388	+	0	NA	intron (NM_001024617, intron 7 of 24)	intron (NM_001024617, intron 7 of 24)	434550	NM_001024617	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding
chipseq_peak_10507	chr5	53972949	53973271	+	0	NA	Intergenic	Intergenic	-25413	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding
chipseq_peak_3803	chr13	83553465	83554233	+	0	NA	intron (NM_001170537, intron 2 of 10)	intron (NM_001170537, intron 2 of 10)	49815	NM_001170537	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_12646	chr8	15221628	15222063	+	0	NA	Intergenic	Intergenic	164192	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding
chipseq_peak_10980	chr5	124334117	124334794	+	0	NA	intron (NM_028310, intron 1 of 1)	intron (NM_028310, intron 1 of 1)	6366	NM_028310	72650	Mm.121658	NM_028310	ENSMUSG00000047635	2810006K23Rik	-	RIKEN cDNA 2810006K23 gene	protein-coding
chipseq_peak_3683	chr13	68867928	68868363	+	0	NA	intron (NM_153534, intron 3 of 24)	intron (NM_153534, intron 3 of 24)	131396	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding
chipseq_peak_10319	chr5	16242590	16243627	+	0	NA	intron (NM_009784, intron 6 of 37)	intron (NM_009784, intron 6 of 37)	308417	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_1794	chr10	92445608	92446265	+	0	NA	Intergenic	Intergenic	-70563	NR_046027	627800	Mm.391417	NR_046027	ENSMUSG00000098040	Gm20757	-	predicted gene, 20757	ncRNA
chipseq_peak_14117	chrX	159827597	159828093	+	0	NA	intron (NM_021389, intron 4 of 16)	intron (NM_021389, intron 4 of 16)	-12623	NM_001135728	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding
chipseq_peak_5686	chr16	43466316	43467048	+	0	NA	intron (NM_019778, intron 3 of 8)	intron (NM_019778, intron 3 of 8)	-46486	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA
chipseq_peak_3487	chr13	24687136	24687575	+	0	NA	intron (NM_001286100, intron 8 of 22)	intron (NM_001286100, intron 8 of 22)	48707	NM_029679	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding
chipseq_peak_695	chr1	107899278	107899779	+	0	NA	Intergenic	Intergenic	-17731	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
chipseq_peak_2906	chr12	43826717	43827363	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	383028	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
chipseq_peak_4924	chr15	26012517	26013560	+	0	NA	Intergenic	LTR16A|LTR|ERVL	28672	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding
chipseq_peak_5677	chr16	42615089	42616226	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	259930	NR_040521	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA
chipseq_peak_11001	chr5	129049340	129049731	+	0	NA	Intergenic	Intergenic	29379	NM_009391	19384	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding
chipseq_peak_6185	chr17	10641679	10642094	+	0	NA	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	185670	NR_077238	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA
chipseq_peak_11000	chr5	128815229	128815991	+	0	NA	intron (NM_001310733, intron 4 of 20)	intron (NM_001310733, intron 4 of 20)	79364	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding
chipseq_peak_11117	chr5	149406733	149407334	+	0	NA	Intergenic	Intergenic	-4773	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding
chipseq_peak_5566	chr16	26848891	26849592	+	0	NA	Intergenic	Intergenic	-93739	NR_105063	100504628	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA
chipseq_peak_8650	chr3	42895421	42896268	+	0	NA	Intergenic	Intergenic	1153226	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
chipseq_peak_2225	chr11	26881133	26882782	+	0	NA	Intergenic	Intergenic	96849	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_5663	chr16	41937653	41938572	+	0	NA	intron (NM_175548, intron 2 of 5)	intron (NM_175548, intron 2 of 5)	365357	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
chipseq_peak_11288	chr6	23987371	23987987	+	0	NA	Intergenic	Intergenic	-17619	NM_207022	387347	Mm.377909	NM_207022	ENSMUSG00000043865	Tas2r118	Gm465|T2R18|Tas2r16|Tas2r18|mGR18|mt2r40	taste receptor, type 2, member 118	protein-coding
chipseq_peak_8750	chr3	55419373	55419823	+	0	NA	intron (NM_019978, intron 4 of 16)	intron (NM_019978, intron 4 of 16)	-42160	NM_001111051	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
chipseq_peak_11814	chr6	107350539	107351102	+	0	NA	Intergenic	L2|LINE|L2	-178906	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding
chipseq_peak_5472	chr16	5787151	5787620	+	0	NA	Intergenic	Intergenic	-97408	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_4403	chr14	74205064	74205818	+	0	NA	Intergenic	Intergenic	-150086	NR_046059	74425	Mm.399498	NR_046059		4933402J15Rik	-	RIKEN cDNA 4933402J15 gene	ncRNA
chipseq_peak_11808	chr6	106498949	106499655	+	0	NA	intron (NM_173004, intron 9 of 19)	intron (NM_173004, intron 9 of 19)	249735	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding
chipseq_peak_7100	chr19	17932552	17932943	+	0	NA	Intergenic	Intergenic	-95115	NM_001190483	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding
chipseq_peak_3841	chr13	85444135	85444537	+	0	NA	Intergenic	Intergenic	-154850	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding
chipseq_peak_8348	chr2	158324972	158325471	+	0	NA	intron (NM_008489, intron 10 of 14)	LTR33A_|LTR|ERVL	18728	NM_008489	16803	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding
chipseq_peak_2843	chr12	35954231	35954960	+	0	NA	Intergenic	Intergenic	28974	NM_207531	403205	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding
chipseq_peak_1008	chr1	164745254	164745883	+	0	NA	Intergenic	Intergenic	-51164	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding
chipseq_peak_9383	chr3	151411602	151412315	+	0	NA	Intergenic	Intergenic	-25924	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_9478	chr4	7580579	7581738	+	0	NA	Intergenic	Intergenic	20470	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA
chipseq_peak_8053	chr2	106745927	106746627	+	0	NA	intron (NM_029837, intron 3 of 6)	intron (NM_029837, intron 3 of 6)	50676	NM_029837	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding
chipseq_peak_11454	chr6	46668725	46669558	+	0	NA	intron (NM_001004357, intron 13 of 23)	intron (NM_001004357, intron 13 of 23)	-575255	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_10333	chr5	18086939	18089160	+	0	NA	Intergenic	Intergenic	125479	NM_001081143	242851	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding
chipseq_peak_752	chr1	123896789	123897271	+	0	NA	intron (NM_199021, intron 2 of 25)	intron (NM_199021, intron 2 of 25)	148529	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding
chipseq_peak_5208	chr15	62792082	62792611	+	0	NA	Intergenic	MLT1B-int|LTR|ERVL-MaLR	-572895	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_3993	chr13	105193289	105194026	+	0	NA	intron (NM_027934, intron 5 of 7)	intron (NM_027934, intron 5 of 7)	99357	NM_027934	71816	Mm.317015	NM_027934		Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding
chipseq_peak_8415	chr2	179390622	179391377	+	0	NA	Intergenic	Intergenic	-23937	NM_026596	68175	Mm.158187	NM_026596		4930591A17Rik	-	RIKEN cDNA 4930591A17 gene	protein-coding
chipseq_peak_158	chr1	30584838	30585475	+	0	NA	Intergenic	Intergenic	278100	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
chipseq_peak_6482	chr17	84258770	84259181	+	0	NA	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-71028	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding
chipseq_peak_9776	chr4	48679203	48679537	+	0	NA	Intergenic	Intergenic	15856	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding
chipseq_peak_4626	chr14	106518456	106518942	+	0	NA	Intergenic	Intergenic	-32179	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
chipseq_peak_8476	chr3	17460480	17461401	+	0	NA	Intergenic	Intergenic	-328981	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	2610100L16Rik	100040120|Gm2612	RIKEN cDNA 2610100L16 gene	ncRNA
chipseq_peak_12981	chr8	68205499	68205851	+	0	NA	Intergenic	Intergenic	-70853	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding
chipseq_peak_9418	chr3	155968304	155968729	+	0	NA	Intergenic	Intergenic	-7838	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
chipseq_peak_10721	chr5	81475378	81476099	+	0	NA	intron (NM_198702, intron 7 of 27)	intron (NM_198702, intron 7 of 27)	454145	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_4660	chr14	111821966	111822955	+	0	NA	Intergenic	Intergenic	147345	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding
chipseq_peak_1740	chr10	84564449	84564752	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-11262	NR_040658	442847	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA
chipseq_peak_11587	chr6	74033502	74034353	+	0	NA	Intergenic	Intergenic	-562906	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA
chipseq_peak_1232	chr10	5847038	5847440	+	0	NA	intron (NM_001161822, intron 3 of 5)	intron (NM_001161822, intron 3 of 5)	-23296	NM_175374	108853	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding
chipseq_peak_4060	chr13	110628224	110629225	+	0	NA	Intergenic	Intergenic	233680	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding
chipseq_peak_12083	chr7	49189375	49189725	+	0	NA	intron (NM_001111016, intron 2 of 38)	L1ME2|LINE|L1	-56639	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
chipseq_peak_8073	chr2	108669295	108669716	+	0	NA	Intergenic	L1_Mur3|LINE|L1	608785	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding
chipseq_peak_3621	chr13	48464201	48464969	+	0	NA	Intergenic	Intergenic	48825	NM_001164575	67911	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding
chipseq_peak_5125	chr15	52536359	52536851	+	0	NA	Intergenic	Intergenic	-175840	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
chipseq_peak_3079	chr12	66156625	66157760	+	0	NA	Intergenic	RSINE1|SINE|B4	127209	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding
chipseq_peak_10567	chr5	62545401	62546959	+	0	NA	Intergenic	Intergenic	219997	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
chipseq_peak_11755	chr6	102597815	102598103	+	0	NA	Intergenic	MTE-int|LTR|ERVL-MaLR	-133292	NM_008779	18488	Mm.435479	NM_008779	ENSMUSG00000030075	Cntn3	Pang	contactin 3	protein-coding
chipseq_peak_7155	chr19	23866061	23866449	+	0	NA	intron (NM_177034, intron 1 of 12)	MamRep434|DNA|TcMar-Tigger	107379	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding
chipseq_peak_6126	chr16	95701712	95702295	+	0	NA	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	-404	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding
chipseq_peak_9004	chr3	86017336	86017973	+	0	NA	Intergenic	Intergenic	-15163	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding
chipseq_peak_12984	chr8	68443874	68444347	+	0	NA	intron (NM_001252623, intron 5 of 10)	L1ME4c|LINE|L1	75651	NR_038181	73609	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA
chipseq_peak_2120	chr11	6078231	6079279	+	0	NA	Intergenic	L1MEg|LINE|L1	-13007	NM_001174053	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	-	calcium/calmodulin-dependent protein kinase II, beta	protein-coding
chipseq_peak_2568	chr11	108273076	108273456	+	0	NA	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	70622	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding
chipseq_peak_10683	chr5	76615235	76616797	+	0	NA	intron (NM_199032, intron 11 of 24)	intron (NM_199032, intron 11 of 24)	24302	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding
chipseq_peak_9052	chr3	104341970	104342720	+	0	NA	Intergenic	L1MC5a|LINE|L1	-121939	NM_001159354	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
chipseq_peak_12436	chr7	111528430	111528837	+	0	NA	intron (NM_173739, intron 6 of 10)	L1ME3E|LINE|L1	251344	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
chipseq_peak_9660	chr4	28850524	28851213	+	0	NA	intron (NM_010141, intron 3 of 16)	intron (NM_010141, intron 3 of 16)	37723	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_4253	chr14	37168053	37168464	+	0	NA	Intergenic	Intergenic	-32936	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
chipseq_peak_172	chr1	31352318	31352896	+	0	NA	Intergenic	Intergenic	87760	NR_015347	226957	Mm.25966	NR_015347		Gm4850	EG226957	THO complex 4 pseudogene	pseudo
chipseq_peak_1884	chr10	101327502	101328082	+	0	NA	Intergenic	Intergenic	-353695	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
chipseq_peak_7406	chr2	7555247	7556119	+	0	NA	Intergenic	Intergenic	-159485	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_2959	chr12	50117037	50122696	+	0	NA	Intergenic	Intergenic	529357	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_2613	chr11	114121771	114122642	+	0	NA	Intergenic	Intergenic	-56255	NM_172800	237979	Mm.130504	NM_172800	ENSMUSG00000041592	Sdk2	4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514	sidekick homolog 2 (chicken)	protein-coding
chipseq_peak_9814	chr4	54351336	54352067	+	0	NA	Intergenic	L1MA8|LINE|L1	525656	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding
chipseq_peak_221	chr1	36980305	36980907	+	0	NA	Intergenic	Intergenic	-41079	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding
chipseq_peak_3300	chr12	97646947	97647392	+	0	NA	Intergenic	Intergenic	612290	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding
chipseq_peak_13905	chr9	112860407	112861366	+	0	NA	Intergenic	Intergenic	604312	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_600	chr1	89550008	89550571	+	0	NA	intron (NM_178119, intron 1 of 17)	intron (NM_178119, intron 1 of 17)	95478	NM_178119	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding
chipseq_peak_10411	chr5	39557245	39557674	+	0	NA	intron (NR_045416, intron 1 of 5)	intron (NR_045416, intron 1 of 5)	46115	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA
chipseq_peak_1598	chr10	57447892	57448459	+	0	NA	Intergenic	Intergenic	38178	NR_045353	74928	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA
chipseq_peak_5911	chr16	70586023	70586411	+	0	NA	Intergenic	Intergenic	-30208	NR_040474	52645	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA
chipseq_peak_5004	chr15	38950593	38951245	+	0	NA	3' UTR (NM_080640, exon 2 of 2)	3' UTR (NM_080640, exon 2 of 2)	17010	NM_080640	118452	Mm.233837	NM_080640		Baalc	2810457D07Rik	brain and acute leukemia, cytoplasmic	protein-coding
chipseq_peak_946	chr1	155307019	155307417	+	0	NA	intron (NM_011273, intron 11 of 14)	intron (NM_011273, intron 11 of 14)	110226	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding
chipseq_peak_2476	chr11	86429414	86430080	+	0	NA	intron (NR_030571, intron 1 of 2)	intron (NR_030571, intron 1 of 2)	13903	NR_030571	100124487		NR_030571	ENSMUSG00000077049	Mir467c	Mirn467c	microRNA 467c	ncRNA
chipseq_peak_965	chr1	159570566	159571082	+	0	NA	intron (NM_022312, intron 1 of 22)	intron (NM_022312, intron 1 of 22)	47055	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding
chipseq_peak_8887	chr3	76238609	76239220	+	0	NA	intron (NM_178673, intron 3 of 15)	intron (NM_178673, intron 3 of 15)	163331	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding
chipseq_peak_3710	chr13	76305769	76307801	+	0	NA	Intergenic	L2b|LINE|L2	-78176	NM_030174	78771	Mm.316249	NM_030174		Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding
chipseq_peak_9749	chr4	39905173	39905405	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-237976	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding
chipseq_peak_8961	chr3	82051263	82053124	+	0	NA	intron (NM_017469, intron 4 of 13)	intron (NM_017469, intron 4 of 13)	22518	NM_017469	54195	Mm.9445	NM_017469	ENSMUSG00000028005	Gucy1b3	GC-S-beta-1|GCbeta1	guanylate cyclase 1, soluble, beta 3	protein-coding
chipseq_peak_850	chr1	139342178	139342625	+	0	NA	intron (NM_133239, intron 1 of 11)	intron (NM_133239, intron 1 of 11)	34675	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding
chipseq_peak_2937	chr12	49409904	49411096	+	0	NA	Intergenic	Intergenic	20848	NR_026733	67293	Mm.185800	NR_026733	ENSMUSG00000104861	3110039M20Rik	-	RIKEN cDNA 3110039M20 gene	ncRNA
chipseq_peak_8692	chr3	50816561	50817188	+	0	NA	Intergenic	Intergenic	-373261	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
chipseq_peak_1958	chr10	109188078	109189525	+	0	NA	Intergenic	Intergenic	-177826	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding
chipseq_peak_1804	chr10	93218820	93219379	+	0	NA	intron (NM_146239, intron 5 of 16)	intron (NM_146239, intron 5 of 16)	56314	NR_035452	100316689		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA
chipseq_peak_10451	chr5	44733981	44734631	+	0	NA	intron (NM_001077398, intron 1 of 8)	intron (NM_001077398, intron 1 of 8)	65440	NM_001077398	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding
chipseq_peak_344	chr1	54065491	54065791	+	0	NA	intron (NM_001001883, intron 1 of 28)	intron (NM_001001883, intron 1 of 28)	129393	NM_172655	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
chipseq_peak_5269	chr15	67888463	67888864	+	0	NA	Intergenic	Intergenic	370193	NM_198644	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
chipseq_peak_5383	chr15	91439805	91441034	+	0	NA	intron (NM_001033633, intron 3 of 9)	intron (NM_001033633, intron 3 of 9)	132842	NM_001033633	239606	Mm.360596	NM_001033633	ENSMUSG00000036298	Slc2a13	6530403A04|A630029G22Rik|AI505012|Gm308	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding
chipseq_peak_6694	chr18	29519705	29520223	+	0	NA	Intergenic	Intergenic	-23548	NR_045391	78058	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA
chipseq_peak_8691	chr3	50694529	50695565	+	0	NA	Intergenic	Intergenic	-251434	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
chipseq_peak_467	chr1	67181309	67181541	+	0	NA	intron (NM_001080809, intron 21 of 37)	intron (NM_001080809, intron 21 of 37)	58398	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding
chipseq_peak_4026	chr13	109047079	109047525	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-277442	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_10851	chr5	102417562	102417953	+	0	NA	Intergenic	Intergenic	-63634	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
chipseq_peak_6985	chr18	69834216	69835065	+	0	NA	Intergenic	Intergenic	-90919	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding
chipseq_peak_12938	chr8	61421157	61421947	+	0	NA	Intergenic	Intergenic	-66182	NM_145595	234309	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding
chipseq_peak_7187	chr19	28044689	28046553	+	0	NA	Intergenic	Intergenic	-34455	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding
chipseq_peak_839	chr1	138135975	138137102	+	0	NA	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	38588	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding
chipseq_peak_655	chr1	99069253	99069983	+	0	NA	Intergenic	Intergenic	648494	NM_027584	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding
chipseq_peak_4100	chr13	116056965	116057664	+	0	NA	Intergenic	Intergenic	252374	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding
chipseq_peak_1969	chr10	109963690	109964362	+	0	NA	intron (NM_001081035, intron 1 of 38)	intron (NM_001081035, intron 1 of 38)	36193	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding
chipseq_peak_764	chr1	126167711	126168676	+	0	NA	intron (NM_176957, intron 7 of 12)	intron (NM_176957, intron 7 of 12)	-255265	NM_001311089	72585	Mm.490405	NM_145100		Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding
chipseq_peak_6264	chr17	45904321	45904620	+	0	NA	Intergenic	Tigger19a|DNA|TcMar-Tigger	120693	NM_001110266	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding
chipseq_peak_493	chr1	70845311	70845751	+	0	NA	intron (NM_177164, intron 3 of 3)	L2a|LINE|L2	119816	NM_001310658	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_7996	chr2	96064060	96064779	+	0	NA	Intergenic	L2a|LINE|L2	-253750	NM_001289743	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_2783	chr12	29015255	29015927	+	0	NA	Intergenic	Intergenic	263763	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e	tumor suppressing subtransferable candidate 1	protein-coding
chipseq_peak_1418	chr10	30242129	30243165	+	0	NA	Intergenic	Intergenic	-42107	NM_001109747	66311	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding
chipseq_peak_1345	chr10	23611962	23612502	+	0	NA	Intergenic	Intergenic	173219	NR_037680	100529074	Mm.371846	NR_037680	ENSMUSG00000070063	Snora33	ACA33|MBI-42	small nucleolar RNA, H/ACA box 33	snoRNA
chipseq_peak_8733	chr3	54344081	54344634	+	0	NA	Intergenic	Intergenic	-16750	NM_001313898	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding
chipseq_peak_3658	chr13	58679660	58680885	+	0	NA	Intergenic	Intergenic	-69395	NM_022317	114304	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding
chipseq_peak_3164	chr12	74301608	74302026	+	0	NA	Intergenic	Intergenic	4343	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding
chipseq_peak_9714	chr4	33964277	33964679	+	0	NA	Intergenic	Intergenic	39846	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding
chipseq_peak_2540	chr11	101732527	101733438	+	0	NA	promoter-TSS (NM_144831)	promoter-TSS (NM_144831)	26	NM_144831	217207	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding
chipseq_peak_5869	chr16	65868015	65869193	+	0	NA	Intergenic	Intergenic	52971	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like 3 (Drosophila)	protein-coding
chipseq_peak_12624	chr8	10230830	10231488	+	0	NA	intron (NM_001081397, intron 1 of 35)	intron (NM_001081397, intron 1 of 35)	77236	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
chipseq_peak_1245	chr10	9112862	9114382	+	0	NA	Intergenic	Intergenic	-227552	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding
chipseq_peak_3770	chr13	82508194	82508886	+	0	NA	Intergenic	Intergenic	189793	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_8097	chr2	113335543	113336597	+	0	NA	intron (NM_001285458, intron 1 of 16)	intron (NM_001285458, intron 1 of 16)	8334	NM_001285458	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|ld	formin 1	protein-coding
chipseq_peak_10662	chr5	72759489	72759876	+	0	NA	intron (NM_013689, intron 15 of 17)	intron (NM_013689, intron 15 of 17)	-6905	NM_001122754	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding
chipseq_peak_3259	chr12	91510120	91512904	+	0	NA	intron (NM_001113404, intron 6 of 8)	(TAA)n|Simple_repeat|Simple_repeat	78137	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding
chipseq_peak_12003	chr6	145187050	145187605	+	0	NA	intron (NM_177222, intron 9 of 15)	intron (NM_177222, intron 9 of 15)	23643	NM_177222	320662	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding
chipseq_peak_8244	chr2	140255395	140256079	+	0	NA	intron (NM_001033296, intron 11 of 19)	intron (NM_001033296, intron 11 of 19)	85091	NM_027093	69487	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding
chipseq_peak_5936	chr16	72699079	72699721	+	0	NA	intron (NM_019413, intron 1 of 28)	intron (NM_019413, intron 1 of 28)	36251	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_5041	chr15	43772847	43774237	+	0	NA	Intergenic	Intergenic	96487	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
chipseq_peak_11220	chr6	14924573	14926323	+	0	NA	intron (NM_053242, intron 1 of 18)	intron (NM_053242, intron 1 of 18)	24099	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding
chipseq_peak_9942	chr4	78580992	78582155	+	0	NA	Intergenic	MIRc|SINE|MIR	-12474	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_10157	chr4	124206384	124206939	+	0	NA	Intergenic	Intergenic	279298	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA
chipseq_peak_2135	chr11	12340611	12341123	+	0	NA	intron (NM_001282993, intron 6 of 13)	intron (NM_001282993, intron 6 of 13)	71273	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
chipseq_peak_6066	chr16	81879636	81879990	+	0	NA	Intergenic	L1M5|LINE|L1	679116	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
chipseq_peak_10490	chr5	50074246	50074622	+	0	NA	Intergenic	Intergenic	-15438	NM_133911	70693	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding
chipseq_peak_9074	chr3	109327079	109327765	+	0	NA	Intergenic	Intergenic	-13261	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding
chipseq_peak_1472	chr10	38848985	38849796	+	0	NA	Intergenic	Intergenic	-27611	NM_001177783	215919	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding
chipseq_peak_8233	chr2	139102292	139103094	+	0	NA	Intergenic	Intergenic	282764	NR_035477	100316816		NR_035477	ENSMUSG00000088983	Mir1952	mmu-mir-1952	microRNA 1952	ncRNA
chipseq_peak_8179	chr2	132134653	132135337	+	0	NA	intron (NM_018824, intron 1 of 15)	L1M4|LINE|L1	10113	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding
chipseq_peak_5605	chr16	34279827	34280363	+	0	NA	intron (NM_001164268, intron 10 of 33)	intron (NM_001164268, intron 10 of 33)	233932	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding
chipseq_peak_11549	chr6	61119636	61120431	+	0	NA	Intergenic	Intergenic	-60292	NM_183310	232035	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding
chipseq_peak_13162	chr8	106322228	106323193	+	0	NA	intron (NM_021491, intron 1 of 8)	L1MC|LINE|L1	15278	NM_021491	58994	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding
chipseq_peak_8959	chr3	82014482	82015241	+	0	NA	intron (NM_021370, intron 8 of 9)	MIRc|SINE|MIR	17939	NM_021370	58170	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding
chipseq_peak_4098	chr13	115131661	115131970	+	0	NA	Intergenic	Intergenic	-29851	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding
chipseq_peak_10197	chr4	134436426	134436798	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	13559	NR_045800	69409	Mm.226215	NR_045800	ENSMUSG00000087343	1700021N21Rik	-	RIKEN cDNA 1700021N21 gene	ncRNA
chipseq_peak_12765	chr8	39781587	39782667	+	0	NA	intron (NR_035426, intron 3 of 5)	intron (NR_035426, intron 3 of 5)	-139449	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding
chipseq_peak_8136	chr2	120496503	120496839	+	0	NA	intron (NM_007601, intron 13 of 23)	intron (NM_007601, intron 13 of 23)	19762	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding
chipseq_peak_9876	chr4	70912588	70913137	+	0	NA	Intergenic	Looper|DNA|PiggyBac	-377934	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
chipseq_peak_10773	chr5	86911296	86911955	+	0	NA	Intergenic	Intergenic	-4688	NM_153598	100727	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding
chipseq_peak_9310	chr3	143053395	143053903	+	0	NA	Intergenic	Intergenic	-171645	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding
chipseq_peak_10192	chr4	133508907	133509347	+	0	NA	Intergenic	Intergenic	-9836	NM_133707	69073	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding
chipseq_peak_4174	chr14	18913344	18913662	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	-19876	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding
chipseq_peak_11526	chr6	55791544	55793179	+	0	NA	Intergenic	Intergenic	-44657	NM_001081665	232016	Mm.333084	NM_001081665	ENSMUSG00000037973	Ccdc129	D530004J12Rik|Gm458	coiled-coil domain containing 129	protein-coding
chipseq_peak_6439	chr17	76605085	76605698	+	0	NA	Intergenic	Intergenic	744368	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
chipseq_peak_2578	chr11	110096050	110096386	+	0	NA	promoter-TSS (NM_153145)	promoter-TSS (NM_153145)	-281	NM_153145	217258	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding
chipseq_peak_10528	chr5	57102440	57102977	+	0	NA	Intergenic	Intergenic	615211	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_3806	chr13	83660054	83662238	+	0	NA	intron (NM_025282, intron 10 of 10)	intron (NM_025282, intron 10 of 10)	-66960	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA
chipseq_peak_6108	chr16	91541693	91542238	+	0	NA	Intergenic	Intergenic	-5129	NM_008338	15980	Mm.249364	NM_008338		Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding
chipseq_peak_2745	chr12	25919741	25920275	+	0	NA	Intergenic	Intergenic	290497	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
chipseq_peak_13772	chr9	94404044	94404457	+	0	NA	Intergenic	Intergenic	133831	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
chipseq_peak_2789	chr12	29723333	29724310	+	0	NA	intron (NM_008666, intron 3 of 24)	intron (NM_008666, intron 3 of 24)	-37376	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA
chipseq_peak_2623	chr11	118940634	118941888	+	0	NA	Intergenic	HAL1|LINE|L1	-29664	NM_001285437	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding
chipseq_peak_7287	chr19	50468726	50469182	+	0	NA	intron (NM_001252501, intron 2 of 25)	intron (NM_001252501, intron 2 of 25)	209692	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_3751	chr13	81767023	81767516	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-16023	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_10096	chr4	104056157	104056613	+	0	NA	Intergenic	L1MA5|LINE|L1	-311153	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
chipseq_peak_12421	chr7	107455108	107455458	+	0	NA	intron (NM_021889, intron 3 of 6)	L5|LINE|RTE-X	84493	NM_021889	60510	Mm.302793	NM_021889	ENSMUSG00000062542	Syt9	-	synaptotagmin IX	protein-coding
chipseq_peak_4285	chr14	48247002	48247454	+	0	NA	intron (NM_033602, intron 3 of 5)	intron (NM_033602, intron 3 of 5)	48512	NR_003630	624367	Mm.445185	NM_001037921	ENSMUSG00000063885	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_11779	chr6	103958993	103959473	+	0	NA	Intergenic	Intergenic	448357	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_8217	chr2	136670485	136671684	+	0	NA	Intergenic	Intergenic	-42366	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding
chipseq_peak_1050	chr1	171478963	171479262	+	0	NA	Intergenic	Intergenic	-24366	NM_019484	56009	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding
chipseq_peak_8903	chr3	78358104	78358610	+	0	NA	Intergenic	Intergenic	786530	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_2196	chr11	25247329	25247983	+	0	NA	Intergenic	Intergenic	-78451	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_2567	chr11	108263066	108263443	+	0	NA	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	80634	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding
chipseq_peak_13759	chr9	92767608	92768815	+	0	NA	intron (NR_040770, intron 1 of 4)	intron (NR_040770, intron 1 of 4)	49495	NR_040770	331003	Mm.50805	NR_040770	ENSMUSG00000101734	4933400C23Rik	4933400C23	RIKEN cDNA 4933400C23 gene	ncRNA
chipseq_peak_6224	chr17	30457203	30458056	+	0	NA	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	-61449	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo
chipseq_peak_13488	chr9	42055036	42055654	+	0	NA	intron (NM_011436, intron 12 of 47)	intron (NM_011436, intron 12 of 47)	68944	NM_011436	20660	Mm.121920	NM_011436		Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding
chipseq_peak_5401	chr15	94049747	94050281	+	0	NA	Intergenic	Intergenic	-122903	NR_045737	77248	Mm.410768	NR_045737		9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA
chipseq_peak_13360	chr9	25021114	25021452	+	0	NA	Intergenic	Intergenic	130498	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding
chipseq_peak_2253	chr11	36677218	36678744	+	0	NA	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	266260	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
chipseq_peak_6316	chr17	55155934	55156802	+	0	NA	Intergenic	RMER1C|Other|Other	-289349	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding
chipseq_peak_151	chr1	28970358	28971519	+	0	NA	Intergenic	Intergenic	-190686	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding
chipseq_peak_8915	chr3	79474811	79475562	+	0	NA	intron (NM_001162999, intron 14 of 16)	intron (NM_001162999, intron 14 of 16)	92493	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding
chipseq_peak_10906	chr5	111752314	111752794	+	0	NA	intron (NR_045833, intron 1 of 4)	intron (NR_045833, intron 1 of 4)	9174	NR_045833	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA
chipseq_peak_2709	chr12	13769080	13769472	+	0	NA	Intergenic	Intergenic	382762	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding
chipseq_peak_678	chr1	104808639	104809020	+	0	NA	intron (NM_011800, intron 1 of 11)	MER58B|DNA|hAT-Charlie	40010	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_1224	chr1	194586651	194587422	+	0	NA	Intergenic	Intergenic	-32793	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding
chipseq_peak_11754	chr6	102556045	102557001	+	0	NA	Intergenic	Intergenic	-91856	NM_008779	18488	Mm.435479	NM_008779	ENSMUSG00000030075	Cntn3	Pang	contactin 3	protein-coding
chipseq_peak_7712	chr2	53437048	53437872	+	0	NA	Intergenic	Intergenic	245376	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding
chipseq_peak_3909	chr13	94677355	94677688	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-111422	NM_009321	21371	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding
chipseq_peak_10823	chr5	97880998	97884427	+	0	NA	Intergenic	Intergenic	148250	NM_133738	71914	Mm.24842	NM_133738		Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding
chipseq_peak_11265	chr6	20840203	20840605	+	0	NA	Intergenic	Intergenic	-375705	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding
chipseq_peak_6172	chr17	8864697	8865139	+	0	NA	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	63173	NM_011866	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding
chipseq_peak_10383	chr5	31749687	31751213	+	0	NA	intron (NM_181279, intron 5 of 13)	intron (NM_181279, intron 5 of 13)	52400	NM_181281	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding
chipseq_peak_1067	chr1	175447974	175448486	+	0	NA	intron (NM_001199003, intron 2 of 17)	intron (NM_001199003, intron 2 of 17)	44315	NM_011880	24012	Mm.7956	NM_011880	ENSMUSG00000026527	Rgs7	-	regulator of G protein signaling 7	protein-coding
chipseq_peak_2482	chr11	86483843	86485557	+	0	NA	promoter-TSS (NM_029788)	promoter-TSS (NM_029788)	43	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding
chipseq_peak_6560	chr18	6136487	6138060	+	0	NA	Intergenic	Intergenic	-1175	NM_001039692	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding
chipseq_peak_7096	chr19	17603422	17603698	+	0	NA	intron (NM_001190483, intron 10 of 37)	intron (NM_001190483, intron 10 of 37)	209517	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding
chipseq_peak_13593	chr9	58096247	58097214	+	0	NA	intron (NM_001311085, intron 2 of 18)	intron (NM_001311085, intron 2 of 18)	5495	NM_029212	382077	Mm.335193	NM_029212	ENSMUSG00000037716	Ccdc33	4930535E21Rik|Gm1117|Tzip1	coiled-coil domain containing 33	protein-coding
chipseq_peak_13153	chr8	103894507	103895010	+	0	NA	Intergenic	Intergenic	-206867	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding
chipseq_peak_9451	chr4	5994991	5995545	+	0	NA	Intergenic	Intergenic	-195837	NM_026534	68053	Mm.404043	NM_026534		Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding
chipseq_peak_9442	chr3	159049634	159050148	+	0	NA	Intergenic	MER34A|LTR|ERV1	-26473	NR_040750	624759	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA
chipseq_peak_2244	chr11	35011306	35012219	+	0	NA	Intergenic	Intergenic	-109694	NM_011412	20564	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit homolog 3 (Drosophila)	protein-coding
chipseq_peak_3303	chr12	98212657	98212910	+	0	NA	intron (NM_008079, intron 14 of 16)	intron (NM_008079, intron 14 of 16)	46676	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding
chipseq_peak_1326	chr10	19514410	19515794	+	0	NA	Intergenic	Intergenic	-76856	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding
chipseq_peak_2920	chr12	45442221	45442595	+	0	NA	Intergenic	Intergenic	-367925	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
chipseq_peak_296	chr1	44596711	44597234	+	0	NA	intron (NM_028450, intron 1 of 10)	intron (NM_028450, intron 1 of 10)	45301	NM_028450	70676	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding
chipseq_peak_2382	chr11	65905477	65905878	+	0	NA	intron (NM_001099633, intron 54 of 68)	MER91B|DNA|hAT-Tip100	98502	NM_001302375	52712	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding
chipseq_peak_11055	chr5	133926727	133927386	+	0	NA	Intergenic	Lx8|LINE|L1	-172692	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
chipseq_peak_13399	chr9	28488559	28489664	+	0	NA	intron (NM_177906, intron 2 of 7)	Charlie4|DNA|hAT-Charlie	697842	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_4275	chr14	45474573	45474797	+	0	NA	intron (NM_146054, intron 6 of 14)	intron (NM_146054, intron 6 of 14)	55380	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family homolog 2 (Drosophila)	protein-coding
chipseq_peak_13105	chr8	97431431	97431884	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-885684	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_12336	chr7	91486719	91487267	+	0	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	396207	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_1308	chr10	17395536	17395961	+	0	NA	Intergenic	Intergenic	-299966	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA
chipseq_peak_1552	chr10	50843112	50845440	+	0	NA	intron (NM_198007, intron 39 of 41)	intron (NM_198007, intron 39 of 41)	-51375	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding
chipseq_peak_5599	chr16	33732627	33733558	+	0	NA	intron (NM_175256, intron 6 of 14)	MIRc|SINE|MIR	48626	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	HEG homolog 1 (zebrafish)	protein-coding
chipseq_peak_9094	chr3	114343428	114344880	+	0	NA	Intergenic	Intergenic	313614	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding
chipseq_peak_1405	chr10	28856187	28856545	+	0	NA	intron (NM_001305663, intron 5 of 5)	intron (NM_001305663, intron 5 of 5)	67141	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo
chipseq_peak_3797	chr13	83372919	83373722	+	0	NA	Intergenic	Intergenic	-130714	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_11697	chr6	98046622	98049416	+	0	NA	Intergenic	Intergenic	56236	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding
chipseq_peak_12301	chr7	89508727	89509106	+	0	NA	3' UTR (NM_029614, exon 2 of 2)	3' UTR (NM_029614, exon 2 of 2)	8670	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding
chipseq_peak_6637	chr18	21961586	21963239	+	0	NA	intron (NM_027616, intron 20 of 22)	intron (NM_027616, intron 20 of 22)	208984	NM_027616	70950	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding
chipseq_peak_10532	chr5	57335641	57336027	+	0	NA	Intergenic	Intergenic	382085	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_7381	chr2	6869709	6871546	+	0	NA	intron (NM_001110229, intron 2 of 14)	intron (NM_001110229, intron 2 of 14)	14369	NM_001110228	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_2581	chr11	110537534	110538093	+	0	NA	Intergenic	Intergenic	138691	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
chipseq_peak_8739	chr3	54815140	54815576	+	0	NA	Intergenic	Intergenic	-7567	NM_133231	170767	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding
chipseq_peak_7800	chr2	62293760	62294956	+	0	NA	intron (NM_033552, intron 18 of 25)	intron (NM_033552, intron 18 of 25)	117873	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding
chipseq_peak_14025	chrX	68251310	68252436	+	0	NA	Intergenic	Intergenic	-241694	NR_030575	100124449		NR_030575	ENSMUSG00000106233	Mir509	Mirn509|mmu-mir-509	microRNA 509	ncRNA
chipseq_peak_11421	chr6	41759219	41760041	+	0	NA	Intergenic	Intergenic	12667	NM_146576	258569	Mm.377571	NM_146576	ENSMUSG00000045479	Olfr459	MOR120-1	olfactory receptor 459	protein-coding
chipseq_peak_5394	chr15	92596569	92599475	+	0	NA	intron (NM_001164594, intron 1 of 7)	polypurine|Low_complexity|Low_complexity	913	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
chipseq_peak_9989	chr4	83827284	83827815	+	0	NA	intron (NM_001081012, intron 25 of 25)	intron (NM_001081012, intron 25 of 25)	217330	NR_130998	78238	Mm.243903	NR_130998		6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA
chipseq_peak_3664	chr13	59180571	59181419	+	0	NA	Intergenic	L1M4a2|LINE|L1	363456	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding
chipseq_peak_11396	chr6	37752881	37753289	+	0	NA	Intergenic	Intergenic	-117726	NM_001272064	21848	Mm.41063	NM_145076		Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding
chipseq_peak_14056	chrX	101486553	101486880	+	0	NA	Intergenic	Intergenic	37607	NM_013712	26549	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding
chipseq_peak_9731	chr4	36262346	36263325	+	0	NA	intron (NM_001165999, intron 3 of 7)	intron (NM_001165999, intron 3 of 7)	382618	NR_030545	100124458		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA
chipseq_peak_1645	chr10	67004209	67005257	+	0	NA	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-342	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA
chipseq_peak_2957	chr12	50079751	50086269	+	0	NA	Intergenic	Intergenic	566213	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_13701	chr9	78527221	78528292	+	0	NA	Intergenic	Intergenic	-46032	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding
chipseq_peak_3879	chr13	91387833	91389732	+	0	NA	promoter-TSS (NR_045161)	promoter-TSS (NR_045161)	-697	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA
chipseq_peak_12343	chr7	91778624	91779193	+	0	NA	intron (NM_011807, intron 3 of 22)	intron (NM_011807, intron 3 of 22)	-283486	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_6225	chr17	30458727	30460530	+	0	NA	intron (NM_172618, intron 6 of 11)	B2_Mm1a|SINE|B2	-63448	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo
chipseq_peak_7280	chr19	49558032	49559978	+	0	NA	Intergenic	Intergenic	1119641	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_11813	chr6	107243674	107244305	+	0	NA	Intergenic	Intergenic	-285737	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding
chipseq_peak_6568	chr18	8327933	8328800	+	0	NA	Intergenic	Intergenic	459169	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chipseq_peak_3695	chr13	70156665	70157257	+	0	NA	Intergenic	Intergenic	-75861	NR_036596	75086	Mm.390616	NR_036596		4930520P13Rik	-	RIKEN cDNA 4930520P13 gene	ncRNA
chipseq_peak_8886	chr3	76068054	76068489	+	0	NA	Intergenic	Intergenic	-6290	NM_178673	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding
chipseq_peak_206	chr1	33960500	33960768	+	0	NA	intron (NM_001276764, intron 2 of 102)	LTR78|LTR|ERV1	-51191	NM_134448	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding
chipseq_peak_11224	chr6	16487069	16487657	+	0	NA	Intergenic	Lx9|LINE|L1	411078	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding
chipseq_peak_11542	chr6	59358828	59359155	+	0	NA	intron (NM_183183, intron 1 of 1)	intron (NM_183183, intron 1 of 1)	67299	NM_183183	243385	Mm.138080	NM_183183		Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding
chipseq_peak_10021	chr4	88086326	88087361	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-7787	NM_001081184	230393	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	Kiaa1797|mKIAA1797	focadhesin	protein-coding
chipseq_peak_2979	chr12	51185499	51186726	+	0	NA	Intergenic	Intergenic	-162118	NM_001167964	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding
chipseq_peak_3396	chr13	6203848	6204188	+	0	NA	Intergenic	Intergenic	342529	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding
chipseq_peak_188	chr1	32564515	32566248	+	0	NA	intron (NM_133235, intron 6 of 8)	intron (NM_133235, intron 6 of 8)	-18088	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding
chipseq_peak_3887	chr13	92247647	92248302	+	0	NA	intron (NM_010829, intron 19 of 23)	AT_rich|Low_complexity|Low_complexity	-106809	NM_010049	13361	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding
chipseq_peak_7922	chr2	78214341	78214950	+	0	NA	Intergenic	Intergenic	-22902	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding
chipseq_peak_11251	chr6	18664516	18665217	+	0	NA	Intergenic	Intergenic	-150041	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_7859	chr2	67464324	67464817	+	0	NA	intron (NM_001024618, intron 1 of 8)	intron (NM_001024618, intron 1 of 8)	18568	NM_001024618	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding
chipseq_peak_13501	chr9	43882069	43882356	+	0	NA	Intergenic	MER34A|LTR|ERV1	137636	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Pvrl1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|nectin-1	poliovirus receptor-related 1	protein-coding
chipseq_peak_4564	chr14	95356804	95358189	+	0	NA	Intergenic	Intergenic	-523770	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding
chipseq_peak_1971	chr10	110191219	110193739	+	0	NA	Intergenic	Intergenic	-192260	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding
chipseq_peak_12080	chr7	48779113	48779492	+	0	NA	Intergenic	Intergenic	-9701	NM_028031	243983	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding
chipseq_peak_2653	chr12	6814395	6817121	+	0	NA	Intergenic	Intergenic	564572	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_13977	chrX	39390481	39390992	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	44470	NM_001177380	78631	Mm.243738	NM_001177380	ENSMUSG00000079619	Cypt15	1700085A12Rik	cysteine-rich perinuclear theca 15	protein-coding
chipseq_peak_829	chr1	137473528	137474455	+	0	NA	Intergenic	Intergenic	-492464	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA
chipseq_peak_2273	chr11	38715046	38716202	+	0	NA	Intergenic	Intergenic	-195579	NR_040295	100502917	Mm.61144	NR_040295		Gm12130	OTTMUSG00000005424	predicted gene 12130	ncRNA
chipseq_peak_13896	chr9	112525346	112525891	+	0	NA	Intergenic	Intergenic	269044	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_5410	chr15	94776165	94776406	+	0	NA	intron (NM_178789, intron 3 of 7)	intron (NM_178789, intron 3 of 7)	147100	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding
chipseq_peak_8330	chr2	156233360	156234243	+	0	NA	intron (NM_172674, intron 2 of 17)	intron (NM_172674, intron 2 of 17)	37154	NM_172674	228829	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding
chipseq_peak_1216	chr1	194160339	194162026	+	0	NA	Intergenic	Intergenic	61577	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_4742	chr14	120815857	120816384	+	0	NA	Intergenic	L1MD|LINE|L1	-95074	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding
chipseq_peak_4934	chr15	27449697	27451337	+	0	NA	Intergenic	Intergenic	-16160	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding
chipseq_peak_1839	chr10	97807821	97808536	+	0	NA	intron (NR_033537, intron 2 of 4)	intron (NR_033537, intron 2 of 4)	93406	NR_130992	78127	Mm.376175	NR_130992		4930525C09Rik	-	RIKEN cDNA 4930525C09 gene	ncRNA
chipseq_peak_237	chr1	38929589	38929992	+	0	NA	Intergenic	MER34A|LTR|ERV1	-9359	NM_001311788	433292	Mm.333709	NM_001011684	ENSMUSG00000067604	Nms	AB164466	neuromedin S	protein-coding
chipseq_peak_13790	chr9	97524378	97525185	+	0	NA	intron (NM_022319, intron 8 of 17)	intron (NM_022319, intron 8 of 17)	-154823	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
chipseq_peak_5762	chr16	52303328	52304081	+	0	NA	intron (NM_009655, intron 3 of 15)	intron (NM_009655, intron 3 of 15)	149293	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
chipseq_peak_520	chr1	73113120	73113546	+	0	NA	Intergenic	Intergenic	88747	NR_038002	69449	Mm.250447	NR_038001	ENSMUSG00000101968	1700027A15Rik	-	RIKEN cDNA 1700027A15 gene	ncRNA
chipseq_peak_11456	chr6	46887911	46888295	+	0	NA	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-356293	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_10655	chr5	72068551	72069151	+	0	NA	intron (NM_008069, intron 5 of 8)	intron (NM_008069, intron 5 of 8)	99332	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding
chipseq_peak_8562	chr3	28745993	28746337	+	0	NA	Intergenic	Intergenic	-35146	NM_177586	208691	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding
chipseq_peak_2004	chr10	113615054	113616962	+	0	NA	Intergenic	Intergenic	29430	NR_035418	100316831		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA
chipseq_peak_13482	chr9	41664986	41665836	+	0	NA	Intergenic	Intergenic	83485	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA
chipseq_peak_7525	chr2	29439201	29440446	+	0	NA	intron (NM_029615, intron 3 of 4)	intron (NM_029615, intron 3 of 4)	35471	NR_105753	102465170		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA
chipseq_peak_6032	chr16	77593901	77594715	+	0	NA	Intergenic	Intergenic	-4628	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA
chipseq_peak_2264	chr11	37773162	37773714	+	0	NA	Intergenic	Intergenic	114449	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	OTTMUSG00000005422	predicted gene 12128	ncRNA
chipseq_peak_5919	chr16	71256196	71256651	+	0	NA	intron (NR_040576, intron 1 of 2)	intron (NR_040576, intron 1 of 2)	6519	NR_040576	78221	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA
chipseq_peak_12361	chr7	92386693	92387951	+	0	NA	intron (NM_011807, intron 16 of 22)	intron (NM_011807, intron 16 of 22)	152352	NM_001243047	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_7507	chr2	23669163	23669427	+	0	NA	Intergenic	RMER17C-int|LTR|ERVK	-97191	NM_001165998	76857	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding
chipseq_peak_10524	chr5	56266087	56266682	+	0	NA	Intergenic	Intergenic	1451535	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_5516	chr16	13565402	13565811	+	0	NA	intron (NM_028761, intron 22 of 23)	L1ME2|LINE|L1	-45187	NR_037997	70100	Mm.158330	NR_037997	ENSMUSG00000099411	2310015D24Rik	-	RIKEN cDNA 2310015D24 gene	ncRNA
chipseq_peak_11105	chr5	146832269	146832834	+	0	NA	promoter-TSS (NM_019647)	promoter-TSS (NM_019647)	-339	NM_019647	19933	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding
chipseq_peak_6059	chr16	79969872	79972710	+	0	NA	Intergenic	Intergenic	-880194	NM_178855	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
chipseq_peak_9302	chr3	141618349	141619101	+	0	NA	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	153161	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 homolog C (C. elegans)	protein-coding
chipseq_peak_11488	chr6	50815194	50815688	+	0	NA	TTS (NR_045984)	TTS (NR_045984)	39326	NR_045984	319981	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA
chipseq_peak_12316	chr7	90941007	90941632	+	0	NA	Intergenic	Intergenic	-149467	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_12962	chr8	65987312	65988396	+	0	NA	intron (NM_175188, intron 3 of 7)	intron (NM_175188, intron 3 of 7)	369329	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
chipseq_peak_7148	chr19	23316887	23317603	+	0	NA	intron (NM_174857, intron 11 of 13)	intron (NM_174857, intron 11 of 13)	-43348	NM_153808	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding
chipseq_peak_7126	chr19	20918205	20918796	+	0	NA	intron (NM_028953, intron 2 of 20)	MER126|DNA|DNA	35702	NM_028953	13409	Mm.219585	NM_028953	ENSMUSG00000024749	Tmc1	4933416G09Rik|Beethoven|Bth|CWEA1|dn	transmembrane channel-like gene family 1	protein-coding
chipseq_peak_3711	chr13	76308924	76309146	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	-75926	NM_030174	78771	Mm.316249	NM_030174		Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding
chipseq_peak_5940	chr16	72862125	72863225	+	0	NA	intron (NM_019413, intron 2 of 28)	intron (NM_019413, intron 2 of 28)	199526	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_10178	chr4	127810833	127811394	+	0	NA	Intergenic	L1MDa|LINE|L1	159728	NM_001134733	635169	Mm.346755	NM_001134733	ENSMUSG00000028813	CK137956	-	cDNA sequence CK137956	protein-coding
chipseq_peak_7883	chr2	71227065	71227674	+	0	NA	intron (NM_001198872, intron 4 of 18)	intron (NM_001198872, intron 4 of 18)	15423	NM_010064	13427	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding
chipseq_peak_13120	chr8	99284929	99285759	+	0	NA	intron (NR_133570, intron 2 of 10)	intron (NR_133570, intron 2 of 10)	131127	NM_001285913	12564	Mm.441131	NM_007667	ENSMUSG00000036510	Cdh8	AI851472|cad8	cadherin 8	protein-coding
chipseq_peak_10345	chr5	20153382	20154003	+	0	NA	intron (NM_001170745, intron 2 of 20)	intron (NM_001170745, intron 2 of 20)	246174	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
chipseq_peak_7190	chr19	28369346	28369927	+	0	NA	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-308588	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_7600	chr2	43763779	43765152	+	0	NA	intron (NM_001301832, intron 1 of 14)	intron (NM_001301832, intron 1 of 14)	15641	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_10527	chr5	57084276	57084935	+	0	NA	Intergenic	L1M4|LINE|L1	633314	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_8057	chr2	107150102	107150833	+	0	NA	Intergenic	Intergenic	-90816	NM_008045	14308	Mm.249525	NM_008045	ENSMUSG00000027120	Fshb	FSH|FSH-B|FSH-beta|Fshbeta	follicle stimulating hormone beta	protein-coding
chipseq_peak_8458	chr3	11601345	11602047	+	0	NA	Intergenic	Intergenic	242663	NR_040751	100038545	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	ENSMUSG00000074696	predicted gene 10745	ncRNA
chipseq_peak_5437	chr15	96650240	96650977	+	0	NA	Intergenic	L2|LINE|L2	-7695	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding
chipseq_peak_10235	chr4	154499821	154500227	+	0	NA	intron (NM_001291029, intron 2 of 15)	intron (NM_001291029, intron 2 of 15)	136343	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA
chipseq_peak_2749	chr12	26102488	26102825	+	0	NA	intron (NR_131149, intron 3 of 4)	intron (NR_131149, intron 3 of 4)	107849	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
chipseq_peak_6372	chr17	65700189	65700482	+	0	NA	intron (NM_133685, intron 3 of 6)	UCON27|Unknown|Unknown	-58131	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding
chipseq_peak_13149	chr8	102753464	102755090	+	0	NA	intron (NM_009866, intron 1 of 12)	intron (NM_009866, intron 1 of 12)	30834	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_9513	chr4	13194793	13195685	+	0	NA	Intergenic	Intergenic	288402	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_10048	chr4	94052217	94053011	+	0	NA	Intergenic	Intergenic	504182	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
chipseq_peak_13588	chr9	57158169	57158694	+	0	NA	promoter-TSS (NM_025417)	promoter-TSS (NM_025417)	-132	NM_025417	66199	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding
chipseq_peak_5925	chr16	72218098	72218544	+	0	NA	Intergenic	Intergenic	16006	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA
chipseq_peak_1374	chr10	27077154	27077759	+	0	NA	intron (NM_008481, intron 40 of 63)	intron (NM_008481, intron 40 of 63)	304944	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
chipseq_peak_9014	chr3	89659834	89660875	+	0	NA	intron (NM_080466, intron 5 of 7)	intron (NM_080466, intron 5 of 7)	-54668	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding
chipseq_peak_5955	chr16	73309841	73310551	+	0	NA	Intergenic	Intergenic	647047	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_11070	chr5	138552286	138552927	+	0	NA	Intergenic	Intergenic	12088	NM_029693	76658	Mm.73235	NM_029693	ENSMUSG00000029526	1700123K08Rik	-	RIKEN cDNA 1700123K08 gene	protein-coding
chipseq_peak_8794	chr3	62397665	62398523	+	0	NA	intron (NM_001081295, intron 5 of 13)	MTEa|LTR|ERVL-MaLR	59317	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding
chipseq_peak_9480	chr4	7726371	7726847	+	0	NA	Intergenic	Intergenic	165921	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA
chipseq_peak_1083	chr1	176944039	176945206	+	0	NA	intron (NM_029756, intron 13 of 17)	intron (NM_029756, intron 13 of 17)	-108489	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_10772	chr5	86528473	86529169	+	0	NA	intron (NM_178730, intron 9 of 10)	intron (NM_178730, intron 9 of 10)	-10221	NM_177162	320454	Mm.184522	NM_177162	ENSMUSG00000079451	Tmprss11g	9930032O22Rik|Desc4	transmembrane protease, serine 11g	protein-coding
chipseq_peak_2766	chr12	26877389	26878251	+	0	NA	Intergenic	Intergenic	237175	NR_045052	100504347	Mm.130500	NR_045052		Gm20187	-	predicted gene, 20187	ncRNA
chipseq_peak_9075	chr3	109680088	109680811	+	0	NA	intron (NM_020505, intron 25 of 26)	intron (NM_020505, intron 25 of 26)	106442	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding
chipseq_peak_2219	chr11	26771596	26772229	+	0	NA	Intergenic	X5A_LINE|LINE|CR1	-13196	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_857	chr1	140492075	140492785	+	0	NA	intron (NM_001081027, intron 14 of 27)	intron (NM_001081027, intron 14 of 27)	163972	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_10551	chr5	60599644	60600652	+	0	NA	Intergenic	Intergenic	-614146	NR_040683	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA
chipseq_peak_14136	chrX	166088890	166089133	+	0	NA	Intergenic	Intergenic	-81443	NM_146238	237221	Mm.209490	NM_146238	ENSMUSG00000040621	Gemin8	B130034M20Rik|B930082C09Rik|BC023488|gemin-8	gem (nuclear organelle) associated protein 8	protein-coding
chipseq_peak_11324	chr6	31171786	31172584	+	0	NA	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	46289	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA
chipseq_peak_6822	chr18	51781860	51782886	+	0	NA	Intergenic	Intergenic	341173	NR_029788	723830		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA
chipseq_peak_3782	chr13	82937114	82939208	+	0	NA	Intergenic	Intergenic	-239828	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_6454	chr17	81010535	81011507	+	0	NA	Intergenic	Intergenic	54064	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding
chipseq_peak_13602	chr9	59182681	59182920	+	0	NA	Intergenic	LTR78|LTR|ERV1	-108772	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding
chipseq_peak_4910	chr15	23452032	23452494	+	0	NA	intron (NM_001081299, intron 10 of 11)	intron (NM_001081299, intron 10 of 11)	415800	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_2088	chr10	125550938	125551666	+	0	NA	Intergenic	Intergenic	-222767	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
chipseq_peak_8680	chr3	49672407	49672864	+	0	NA	Intergenic	Intergenic	84681	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding
chipseq_peak_1176	chr1	188616508	188617043	+	0	NA	intron (NM_021408, intron 31 of 70)	intron (NM_021408, intron 31 of 70)	353937	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin	Usher syndrome 2A (autosomal recessive, mild)	protein-coding
chipseq_peak_7137	chr19	22497943	22498474	+	0	NA	intron (NM_177341, intron 1 of 26)	intron (NM_177341, intron 1 of 26)	50000	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding
chipseq_peak_9511	chr4	13089667	13091321	+	0	NA	Intergenic	Intergenic	183657	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_11316	chr6	28546911	28547653	+	0	NA	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	66934	NM_019776	56463	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding
chipseq_peak_2288	chr11	39892594	39893057	+	0	NA	Intergenic	Intergenic	-502600	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_4118	chr13	118029011	118031618	+	0	NA	Intergenic	ORR1C1|LTR|ERVL-MaLR	-310303	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
chipseq_peak_5147	chr15	55142642	55143192	+	0	NA	intron (NM_001037937, intron 1 of 8)	intron (NM_001037937, intron 1 of 8)	9481	NM_001037937	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding
chipseq_peak_9057	chr3	104666899	104667320	+	0	NA	Intergenic	Intergenic	28445	NM_009196	20501	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding
chipseq_peak_4860	chr15	19154125	19154653	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	334060	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_5731	chr16	49379039	49379462	+	0	NA	Intergenic	Intergenic	-320044	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding
chipseq_peak_9779	chr4	48838950	48839659	+	0	NA	Intergenic	Intergenic	175790	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding
chipseq_peak_4894	chr15	22250897	22251495	+	0	NA	Intergenic	Intergenic	463788	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding
chipseq_peak_4395	chr14	70016532	70017321	+	0	NA	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-60519	NM_018781	13655	Mm.103737	NM_018781		Egr3	Pilot	early growth response 3	protein-coding
chipseq_peak_3809	chr13	83739657	83740300	+	0	NA	Intergenic	Intergenic	1164	NR_029545	723967		NR_029545	ENSMUSG00000065424	Mir9-2	Mirn9-2|mir-9-2|mmu-mir-9-2	microRNA 9-2	ncRNA
chipseq_peak_8924	chr3	80004551	80005265	+	0	NA	Intergenic	Intergenic	118978	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_10263	chr5	7899528	7899846	+	0	NA	Intergenic	Intergenic	-60785	NM_054098	117167	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding
chipseq_peak_9730	chr4	36183803	36184194	+	0	NA	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-338794	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_2925	chr12	46248298	46249083	+	0	NA	Intergenic	Intergenic	570085	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
chipseq_peak_7808	chr2	62480681	62481398	+	0	NA	intron (NM_008100, intron 1 of 5)	intron (NM_008100, intron 1 of 5)	2614	NM_008100	14526	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding
chipseq_peak_2051	chr10	122715860	122716441	+	0	NA	intron (NM_176919, intron 1 of 8)	intron (NM_176919, intron 1 of 8)	36835	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA
chipseq_peak_8142	chr2	122968333	122969726	+	0	NA	Intergenic	Intergenic	187030	NM_021507	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding
chipseq_peak_10189	chr4	132269031	132270479	+	0	NA	TTS (NR_002865)	TTS (NR_002865)	431	NR_002865	353373	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA
chipseq_peak_10480	chr5	49290669	49291074	+	0	NA	Intergenic	Lx9|LINE|L1	-5212	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
chipseq_peak_11574	chr6	66197923	66198350	+	0	NA	Intergenic	Intergenic	245565	NM_001161773	67653	Mm.389756	NM_001161773	ENSMUSG00000036463	4930544G11Rik	-	RIKEN cDNA 4930544G11 gene	protein-coding
chipseq_peak_9931	chr4	77769323	77769880	+	0	NA	intron (NM_011211, intron 2 of 39)	intron (NM_011211, intron 2 of 39)	442294	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_40	chr1	12092243	12092973	+	0	NA	Intergenic	Intergenic	-333378	NR_105759	102465961		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA
chipseq_peak_255	chr1	41054623	41055047	+	0	NA	Intergenic	Intergenic	126417	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_176	chr1	31660257	31660652	+	0	NA	Intergenic	L1MCa|LINE|L1	395607	NR_015347	226957	Mm.25966	NR_015347		Gm4850	EG226957	THO complex 4 pseudogene	pseudo
chipseq_peak_9371	chr3	150530843	150531540	+	0	NA	Intergenic	Intergenic	-906691	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_3035	chr12	59798047	59798520	+	0	NA	Intergenic	Intergenic	-578800	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_13538	chr9	50172031	50172456	+	0	NA	Intergenic	Intergenic	60939	NR_131161	71873		NR_131161		2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA
chipseq_peak_5888	chr16	67578690	67582620	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	40253	NM_001145977	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_1332	chr10	20944351	20945018	+	0	NA	Intergenic	L1M3|LINE|L1	-7863	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding
chipseq_peak_8576	chr3	29710700	29711370	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	74291	NR_105796	102466637		NR_105796	ENSMUSG00000098315	Mir21b	Gm27951|mmu-mir-21b	microRNA 21b	ncRNA
chipseq_peak_12886	chr8	54998964	55003429	+	0	NA	intron (NM_001253756, intron 1 of 5)	L1MA6|LINE|L1	46468	NM_153581	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_10746	chr5	83958187	83958790	+	0	NA	Intergenic	Intergenic	458894	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_12328	chr7	91350380	91350823	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	259815	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_12716	chr8	31864844	31865269	+	0	NA	intron (NM_178591, intron 1 of 8)	intron (NM_178591, intron 1 of 8)	53147	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding
chipseq_peak_4935	chr15	27460370	27462568	+	0	NA	Intergenic	L1MC5a|LINE|L1	-5208	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding
chipseq_peak_8243	chr2	140252305	140252971	+	0	NA	intron (NM_001033296, intron 12 of 19)	intron (NM_001033296, intron 12 of 19)	81992	NM_027093	69487	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding
chipseq_peak_8578	chr3	31092881	31093941	+	0	NA	Intergenic	Intergenic	-1647	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding
chipseq_peak_4482	chr14	84018739	84019035	+	0	NA	Intergenic	Intergenic	-424676	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
chipseq_peak_1174	chr1	188395163	188395661	+	0	NA	intron (NM_021408, intron 10 of 70)	intron (NM_021408, intron 10 of 70)	132574	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin	Usher syndrome 2A (autosomal recessive, mild)	protein-coding
chipseq_peak_4536	chr14	91728848	91729196	+	0	NA	Intergenic	Lx7|LINE|L1	1602131	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
chipseq_peak_4823	chr15	13989641	13990146	+	0	NA	Intergenic	Intergenic	-816218	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_13964	chrX	10063515	10064130	+	0	NA	intron (NM_016911, intron 4 of 9)	intron (NM_016911, intron 4 of 9)	53839	NM_016911	51795	Mm.1927	NM_016911	ENSMUSG00000090084	Srpx	drs|drs-1|drs-2|mDRS-1|mDRS-2	sushi-repeat-containing protein	protein-coding
chipseq_peak_4684	chr14	114768720	114769075	+	0	NA	Intergenic	Intergenic	-63068	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_9722	chr4	35401872	35402992	+	0	NA	Intergenic	Intergenic	-176552	NM_001081343	73205	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585	RIKEN cDNA 3110043O21 gene	protein-coding
chipseq_peak_4791	chr15	10696823	10697279	+	0	NA	intron (NM_001166408, intron 1 of 17)	intron (NM_001166408, intron 1 of 17)	16489	NM_030690	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding
chipseq_peak_1340	chr10	22746304	22746644	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-15027	NM_011603	237336	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding
chipseq_peak_12261	chr7	78753624	78754988	+	0	NA	Intergenic	L1ME4b|LINE|L1	28783	NM_023331	67308	Mm.193181	NM_023331	ENSMUSG00000030612	Mrpl46	3110052F15Rik|C15orf4|C80107|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding
chipseq_peak_1818	chr10	95542912	95543306	+	0	NA	3' UTR (NM_080560, exon 4 of 4)	3' UTR (NM_080560, exon 4 of 4)	16212	NR_037212	100526463		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA
chipseq_peak_7967	chr2	84217712	84218752	+	0	NA	Intergenic	Intergenic	207034	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding
chipseq_peak_5076	chr15	45273714	45274237	+	0	NA	Intergenic	Intergenic	-159041	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding
chipseq_peak_7535	chr2	33453159	33454252	+	0	NA	exon (NM_001025594, exon 3 of 3)	exon (NM_001025594, exon 3 of 3)	14827	NM_027947	71834	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding
chipseq_peak_11545	chr6	59488818	59489881	+	0	NA	Intergenic	Intergenic	-63059	NM_183183	243385	Mm.138080	NM_183183		Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding
chipseq_peak_12879	chr8	54866651	54867571	+	0	NA	intron (NM_001253754, intron 1 of 6)	intron (NM_001253754, intron 1 of 6)	-87617	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_5306	chr15	71276065	71276784	+	0	NA	Intergenic	Intergenic	451414	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
chipseq_peak_2489	chr11	87447985	87449575	+	0	NA	intron (NM_031386, intron 2 of 30)	U3|snRNA|snRNA	21189	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding
chipseq_peak_6543	chr17	91953821	91954289	+	0	NA	Intergenic	Intergenic	-861253	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
chipseq_peak_11199	chr6	13759140	13759956	+	0	NA	Intergenic	Intergenic	80300	NM_145066	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding
chipseq_peak_5781	chr16	54259193	54259725	+	0	NA	Intergenic	Intergenic	1023778	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
chipseq_peak_2368	chr11	58578561	58578897	+	0	NA	Intergenic	Intergenic	-2108	NM_207153	258261	Mm.303171	NM_207153	ENSMUSG00000060765	Olfr325	MOR275-5	olfactory receptor 325	protein-coding
chipseq_peak_276	chr1	41899825	41900925	+	0	NA	Intergenic	Intergenic	-719123	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_11733	chr6	101199177	101199544	+	0	NA	intron (NM_018884, intron 3 of 9)	intron (NM_018884, intron 3 of 9)	178537	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
chipseq_peak_2466	chr11	85328834	85329589	+	0	NA	intron (NM_016910, intron 2 of 5)	intron (NM_016910, intron 2 of 5)	17957	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding
chipseq_peak_13827	chr9	103642092	103642936	+	0	NA	intron (NM_178638, intron 2 of 5)	L4_C_Mam|LINE|RTE-X	85424	NR_040764	319215	Mm.425597	NR_040764	ENSMUSG00000099616	4932413F04Rik	-	RIKEN cDNA 4932413F04 gene	ncRNA
chipseq_peak_13935	chr9	116391918	116392494	+	0	NA	Intergenic	Intergenic	-216843	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding
chipseq_peak_9304	chr3	142120733	142121900	+	0	NA	intron (NM_001277216, intron 1 of 11)	intron (NM_001277216, intron 1 of 11)	47912	NM_001277217	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding
chipseq_peak_2913	chr12	44380754	44381350	+	0	NA	intron (NM_176930, intron 1 of 30)	intron (NM_176930, intron 1 of 30)	52167	NM_176930	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding
chipseq_peak_13197	chr8	112809250	112809908	+	0	NA	intron (NM_130457, intron 13 of 23)	intron (NM_130457, intron 13 of 23)	239536	NM_130457	170571	Mm.209232	NM_130457	ENSMUSG00000031772	Cntnap4	Caspr4|E130114F09Rik	contactin associated protein-like 4	protein-coding
chipseq_peak_9848	chr4	65019312	65019901	+	0	NA	Intergenic	Intergenic	-104568	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding
chipseq_peak_4369	chr14	65266084	65266840	+	0	NA	promoter-TSS (NM_015795)	promoter-TSS (NM_015795)	-239	NM_015795	50759	Mm.65308	NM_015795	ENSMUSG00000034532	Fbxo16	4932435C24Rik|Fbx16	F-box protein 16	protein-coding
chipseq_peak_10748	chr5	84025524	84026855	+	0	NA	Intergenic	Intergenic	391193	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_10817	chr5	97563638	97565993	+	0	NA	intron (NR_045981, intron 6 of 7)	B4|SINE|B4	-107807	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding
chipseq_peak_374	chr1	56149509	56150037	+	0	NA	Intergenic	Intergenic	130795	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_4087	chr13	113877543	113878044	+	0	NA	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	83285	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding
chipseq_peak_1123	chr1	177683594	177685378	+	0	NA	Intergenic	Intergenic	-41543	NR_037994	75589	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA
chipseq_peak_3233	chr12	82941855	82942376	+	0	NA	intron (NM_001310478, intron 2 of 17)	L1MB1|LINE|L1	-2960	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA
chipseq_peak_7578	chr2	41812967	41813390	+	0	NA	intron (NM_053011, intron 3 of 90)	Charlie5|DNA|hAT-Charlie	634390	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
chipseq_peak_2418	chr11	72564380	72564818	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	-14353	NM_029932	77577	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding
chipseq_peak_10330	chr5	17641333	17642036	+	0	NA	intron (NM_013657, intron 2 of 17)	intron (NM_013657, intron 2 of 17)	66868	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding
chipseq_peak_5404	chr15	94251964	94252645	+	0	NA	intron (NR_045629, intron 2 of 3)	intron (NR_045629, intron 2 of 3)	5102	NR_045629	328594	Mm.135523	NR_045629		D630010B17Rik	Gm811	RIKEN cDNA D630010B17 gene	ncRNA
chipseq_peak_7477	chr2	15468875	15470146	+	0	NA	Intergenic	Intergenic	-56969	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding
chipseq_peak_11914	chr6	134218346	134219819	+	0	NA	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-177247	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding
chipseq_peak_1131	chr1	179385280	179386162	+	0	NA	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	132282	NM_027188	69726	Mm.222338	NM_027188		Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding
chipseq_peak_7314	chr19	57137979	57138320	+	0	NA	intron (NM_001290813, intron 4 of 20)	intron (NM_001290813, intron 4 of 20)	-19125	NM_001103178	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding
chipseq_peak_4368	chr14	65185672	65186533	+	0	NA	Intergenic	Intergenic	76361	NM_021458	14365	Mm.214687	NM_021458		Fzd3	AU020229|D930050A07Rik|Fz3	frizzled homolog 3 (Drosophila)	protein-coding
chipseq_peak_8214	chr2	136578141	136578749	+	0	NA	Intergenic	Intergenic	46124	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding
chipseq_peak_4314	chr14	58202785	58203083	+	0	NA	Intergenic	Intergenic	130248	NM_013518	14180	Mm.8846	NM_013518		Fgf9	Eks	fibroblast growth factor 9	protein-coding
chipseq_peak_3089	chr12	67072603	67072895	+	0	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	149800	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_3884	chr13	92196703	92197535	+	0	NA	Intergenic	Intergenic	-157664	NM_010049	13361	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding
chipseq_peak_11954	chr6	139254886	139256010	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	67128	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA
chipseq_peak_2869	chr12	38450779	38452189	+	0	NA	intron (NM_178681, intron 22 of 24)	intron (NM_178681, intron 22 of 24)	163037	NR_045943	73867	Mm.78933	NR_045943		4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA
chipseq_peak_13594	chr9	58205961	58206478	+	0	NA	intron (NR_033522, intron 2 of 2)	intron (NR_033522, intron 2 of 2)	-1900	NM_001161541	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding
chipseq_peak_2505	chr11	91310234	91311204	+	0	NA	Intergenic	Intergenic	266836	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding
chipseq_peak_2330	chr11	44547947	44548406	+	0	NA	intron (NM_028862, intron 4 of 10)	intron (NM_028862, intron 4 of 10)	28799	NM_001166553	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding
chipseq_peak_4054	chr13	110175201	110176398	+	0	NA	intron (NM_023852, intron 3 of 4)	intron (NM_023852, intron 3 of 4)	104407	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding
chipseq_peak_2284	chr11	39479914	39480311	+	0	NA	Intergenic	Intergenic	-89887	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_6664	chr18	23851542	23852596	+	0	NA	intron (NM_001162942, intron 3 of 7)	intron (NM_001162942, intron 3 of 7)	48099	NM_153058	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding
chipseq_peak_8010	chr2	97849087	97849628	+	0	NA	Intergenic	Intergenic	381700	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_1635	chr10	65614039	65614662	+	0	NA	Intergenic	L1M5|LINE|L1	509714	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA
chipseq_peak_4170	chr14	17719751	17720182	+	0	NA	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	59006	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding
chipseq_peak_6879	chr18	55967084	55967428	+	0	NA	Intergenic	Intergenic	-464876	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
chipseq_peak_11038	chr5	132403513	132404196	+	0	NA	intron (NM_177047, intron 1 of 18)	intron (NM_177047, intron 1 of 18)	138489	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
chipseq_peak_8321	chr2	149666422	149666842	+	0	NA	Intergenic	Intergenic	-164151	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding
chipseq_peak_8575	chr3	29707065	29707899	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	70738	NR_105796	102466637		NR_105796	ENSMUSG00000098315	Mir21b	Gm27951|mmu-mir-21b	microRNA 21b	ncRNA
chipseq_peak_981	chr1	160366471	160366994	+	0	NA	intron (NM_013862, intron 18 of 20)	L1MA4|LINE|L1	-15161	NM_001038621	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding
chipseq_peak_13336	chr9	17484922	17486158	+	0	NA	Intergenic	Intergenic	-806727	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding
chipseq_peak_5170	chr15	58175748	58176526	+	0	NA	3' UTR (NM_026346, exon 9 of 9)	3' UTR (NM_026346, exon 9 of 9)	34701	NM_029734	76773	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding
chipseq_peak_8504	chr3	20739637	20739942	+	0	NA	Intergenic	L1MD|LINE|L1	-372612	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
chipseq_peak_6189	chr17	11513804	11514438	+	0	NA	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	369068	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA
chipseq_peak_13202	chr8	113114134	113114771	+	0	NA	Intergenic	Intergenic	47190	NR_033584	791378	Mm.350576	NR_033584		Gm10280	ENSMUSG00000069883	predicted gene 10280	ncRNA
chipseq_peak_11776	chr6	103923424	103925113	+	0	NA	Intergenic	Intergenic	413392	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_9975	chr4	81568078	81568838	+	0	NA	Intergenic	Intergenic	-81445	NR_030570	100124446		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA
chipseq_peak_3340	chr12	108378522	108379137	+	0	NA	intron (NM_001286346, intron 1 of 21)	intron (NM_001286346, intron 1 of 21)	7676	NM_001286346	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding
chipseq_peak_6429	chr17	75443208	75443937	+	0	NA	intron (NM_001166493, intron 1 of 16)	intron (NM_001166493, intron 1 of 16)	7667	NM_001166493	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding
chipseq_peak_3597	chr13	46096337	46096929	+	0	NA	Intergenic	UCON28a|Unknown|Unknown	-131642	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding
chipseq_peak_7723	chr2	54379251	54379672	+	0	NA	Intergenic	Intergenic	-56926	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
chipseq_peak_8071	chr2	108056790	108057982	+	0	NA	Intergenic	Intergenic	766797	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_12508	chr7	126236177	126236951	+	0	NA	intron (NR_131046, intron 2 of 4)	intron (NR_131046, intron 2 of 4)	1040	NR_131047	76728	Mm.76920	NR_131046		1700123J17Rik	-	RIKEN cDNA 1700123J17 gene	ncRNA
chipseq_peak_7024	chr18	78747941	78748399	+	0	NA	Intergenic	Intergenic	-151220	NM_207651	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
chipseq_peak_5012	chr15	40223534	40223798	+	0	NA	Intergenic	Intergenic	89301	NM_001256056	328531	Mm.60703	NM_001256056		9330182O14Rik	-	RIKEN cDNA 9330182O14 gene	protein-coding
chipseq_peak_4703	chr14	116185731	116187630	+	0	NA	intron (NM_175500, intron 7 of 7)	intron (NM_175500, intron 7 of 7)	-738617	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_9667	chr4	30268064	30268681	+	0	NA	Intergenic	Intergenic	-396224	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
chipseq_peak_11365	chr6	34153551	34154832	+	0	NA	Intergenic	Intergenic	22863	NM_021435	58246	Mm.245527	NM_021435		Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding
chipseq_peak_576	chr1	83117693	83118069	+	0	NA	exon (NM_001159738, exon 2 of 4)	exon (NM_001159738, exon 2 of 4)	1115	NM_016960	20297	Mm.116739	NM_016960	ENSMUSG00000026166	Ccl20	CKb4|LARC|MIP-3A|MIP-3[a]|MIP3A|ST38|Scya20|exodus-1	chemokine (C-C motif) ligand 20	protein-coding
chipseq_peak_13750	chr9	90973596	90974017	+	0	NA	Intergenic	Intergenic	391993	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding
chipseq_peak_13039	chr8	83899137	83899660	+	0	NA	promoter-TSS (NM_181039)	promoter-TSS (NM_181039)	-700	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding
chipseq_peak_3602	chr13	46355837	46356362	+	0	NA	Intergenic	Intergenic	-62201	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding
chipseq_peak_12685	chr8	23327305	23327665	+	0	NA	Intergenic	Intergenic	-70405	NM_020585	57437	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding
chipseq_peak_13584	chr9	56496664	56497266	+	0	NA	TTS (NM_025812)	TTS (NM_025812)	78119	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding
chipseq_peak_5752	chr16	51758929	51759645	+	0	NA	Intergenic	Intergenic	-272262	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
chipseq_peak_3006	chr12	55835915	55836322	+	0	NA	promoter-TSS (NM_001037756)	promoter-TSS (NM_001037756)	-248	NM_001037756	52592	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding
chipseq_peak_10245	chr5	4814423	4815038	+	0	NA	intron (NM_001310448, intron 13 of 13)	intron (NM_001310448, intron 13 of 13)	-56514	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled homolog 1 (Drosophila)	protein-coding
chipseq_peak_5938	chr16	72822657	72822916	+	0	NA	intron (NM_019413, intron 2 of 28)	intron (NM_019413, intron 2 of 28)	159637	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_13981	chrX	41425754	41426033	+	0	NA	intron (NR_104053, intron 2 of 16)	intron (NR_104053, intron 2 of 16)	24364	NM_001290451	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding
chipseq_peak_7992	chr2	95136287	95137055	+	0	NA	Intergenic	Intergenic	-698485	NM_001305258	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding
chipseq_peak_4816	chr15	13593894	13594450	+	0	NA	Intergenic	Intergenic	-420497	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_6097	chr16	88886777	88887481	+	0	NA	Intergenic	Intergenic	-2040	NM_130873	170654	Mm.196689	NM_130873	ENSMUSG00000043982	Krtap19-4	Krtap16-4	keratin associated protein 19-4	protein-coding
chipseq_peak_7826	chr2	63556738	63557408	+	0	NA	Intergenic	Intergenic	-372786	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
chipseq_peak_3336	chr12	106376842	106378113	+	0	NA	Intergenic	Intergenic	70189	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA
chipseq_peak_13154	chr8	103896665	103897156	+	0	NA	Intergenic	Intergenic	-204715	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding
chipseq_peak_4879	chr15	20711903	20712431	+	0	NA	Intergenic	Intergenic	-45417	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_12197	chr7	71471955	71473072	+	0	NA	Intergenic	Intergenic	-437182	NR_130995	78156	Mm.243818	NR_130995		4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA
chipseq_peak_6025	chr16	76937586	76939131	+	0	NA	Intergenic	Intergenic	72523	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA
chipseq_peak_2848	chr12	36584756	36585221	+	0	NA	intron (NM_178629, intron 9 of 9)	intron (NM_178629, intron 9 of 9)	169372	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA
chipseq_peak_1531	chr10	47026954	47029329	+	0	NA	Intergenic	Intergenic	783392	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA
chipseq_peak_1013	chr1	166692153	166692645	+	0	NA	Intergenic	Intergenic	-10554	NM_172844	240894	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding
chipseq_peak_11290	chr6	24212063	24212345	+	0	NA	Intergenic	Intergenic	-44112	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding
chipseq_peak_2733	chr12	17097751	17098367	+	0	NA	Intergenic	Intergenic	78829	NM_201531	382571	Mm.40173	NM_201531	ENSMUSG00000051726	Kcnf1	Gm1182|Kv5.1	potassium voltage-gated channel, subfamily F, member 1	protein-coding
chipseq_peak_3096	chr12	67341202	67341503	+	0	NA	Intergenic	Intergenic	-118803	NM_001193266	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_5533	chr16	23480137	23480562	+	0	NA	intron (NM_008555, intron 8 of 15)	intron (NM_008555, intron 8 of 15)	40241	NM_008555	17174	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding
chipseq_peak_6117	chr16	94313581	94314399	+	0	NA	Intergenic	Intergenic	-14432	NM_133229	170765	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply3 homolog (zebrafish)	protein-coding
chipseq_peak_1129	chr1	179231846	179232562	+	0	NA	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	285799	NM_027188	69726	Mm.222338	NM_027188		Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding
chipseq_peak_12775	chr8	41056855	41057257	+	0	NA	intron (NM_001286413, intron 3 of 13)	intron (NM_001286413, intron 3 of 13)	-2260	NM_001005864	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding
chipseq_peak_7094	chr19	16220013	16220291	+	0	NA	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	56054	NR_033228	595139	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo
chipseq_peak_7572	chr2	40431284	40431870	+	0	NA	Intergenic	Intergenic	-1205239	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding
chipseq_peak_11129	chr6	3496231	3496646	+	0	NA	Intergenic	Intergenic	-1940	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding
chipseq_peak_12515	chr7	127393454	127393916	+	0	NA	promoter-TSS (NM_198011)	promoter-TSS (NM_198011)	-64	NM_198011	101604	Mm.334241	NM_198011		E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding
chipseq_peak_2855	chr12	37271877	37272955	+	0	NA	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	30777	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding
chipseq_peak_12150	chr7	56779142	56779511	+	0	NA	intron (NM_008074, intron 5 of 9)	MLT1A|LTR|ERVL-MaLR	539555	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p	oculocutaneous albinism II	protein-coding
chipseq_peak_2705	chr12	13035201	13035907	+	0	NA	Intergenic	Intergenic	-93718	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	protein-coding
chipseq_peak_382	chr1	56249443	56250900	+	0	NA	Intergenic	Intergenic	231193	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_11925	chr6	136543061	136543848	+	0	NA	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	24603	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding
chipseq_peak_3707	chr13	76178743	76179065	+	0	NA	intron (NM_001081352, intron 40 of 43)	intron (NM_001081352, intron 40 of 43)	80170	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	mKIAA0372	tetratricopeptide repeat domain 37	protein-coding
chipseq_peak_12149	chr7	56730950	56731402	+	0	NA	intron (NM_008074, intron 7 of 9)	L1MDa|LINE|L1	491405	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p	oculocutaneous albinism II	protein-coding
chipseq_peak_10037	chr4	91299486	91299895	+	0	NA	intron (NM_010486, intron 2 of 6)	intron (NM_010486, intron 2 of 6)	72365	NM_207686	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding
chipseq_peak_2951	chr12	49947920	49953829	+	0	NA	Intergenic	Intergenic	-470012	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_10141	chr4	118945057	118945546	+	0	NA	Intergenic	Intergenic	-10461	NM_146399	258394	Mm.434316	NM_146399	ENSMUSG00000096368	Olfr1328	MOR259-1|MOR259-13|Olfr1519	olfactory receptor 1328	protein-coding
chipseq_peak_1339	chr10	22007674	22008022	+	0	NA	Intergenic	Intergenic	13182	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding
chipseq_peak_3288	chr12	95302364	95303391	+	0	NA	Intergenic	Intergenic	-389349	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chipseq_peak_12824	chr8	48367359	48368166	+	0	NA	intron (NM_011857, intron 4 of 28)	intron (NM_011857, intron 4 of 28)	257749	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding
chipseq_peak_4248	chr14	34712167	34712784	+	0	NA	intron (NM_001004436, intron 4 of 18)	intron (NM_001004436, intron 4 of 18)	38547	NM_001004436	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding
chipseq_peak_9206	chr3	124447639	124448332	+	0	NA	Intergenic	Intergenic	-21957	NM_027939	71824	Mm.331353	NM_027939	ENSMUSG00000027973	1700006A11Rik	-	RIKEN cDNA 1700006A11 gene	protein-coding
chipseq_peak_5644	chr16	40456449	40456922	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-1076657	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_11104	chr5	146629635	146632083	+	0	NA	Intergenic	Intergenic	-45620	NM_001010941	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding
chipseq_peak_175	chr1	31462040	31463367	+	0	NA	Intergenic	Intergenic	197856	NR_015347	226957	Mm.25966	NR_015347		Gm4850	EG226957	THO complex 4 pseudogene	pseudo
chipseq_peak_11	chr1	6857848	6859307	+	0	NA	exon (NM_001244693, exon 23 of 23)	exon (NM_001244693, exon 23 of 23)	128526	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
chipseq_peak_1524	chr10	46193800	46194890	+	0	NA	Intergenic	Intergenic	-50403	NR_028274	100302593		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA
chipseq_peak_7630	chr2	44379666	44380785	+	0	NA	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-314901	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_3241	chr12	85614120	85614414	+	0	NA	intron (NM_001205052, intron 2 of 3)	intron (NM_001205052, intron 2 of 3)	14249	NM_001205053	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding
chipseq_peak_10867	chr5	105440992	105441341	+	0	NA	intron (NM_001033550, intron 1 of 4)	intron (NM_001033550, intron 1 of 4)	25391	NM_001033550	433926	Mm.439781	NM_001033550		Lrrc8b	R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding
chipseq_peak_66	chr1	18535522	18536385	+	0	NA	Intergenic	Intergenic	-270815	NM_001040027	654464	Mm.99530	NM_001040027		Gm15386	BD-17|BD-41|Defb17|Defb41|OTTMUSG00000020946|OTTMUSG00000020948|mBD-41	predicted gene 15386	protein-coding
chipseq_peak_4872	chr15	20151198	20152711	+	0	NA	Intergenic	Intergenic	514796	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_8417	chr2	180488234	180489080	+	0	NA	Intergenic	Intergenic	-11319	NM_018766	18216	Mm.301712	NM_018766	ENSMUSG00000027568	Ntsr1	NT-1R|NTR-1|NTR1	neurotensin receptor 1	protein-coding
chipseq_peak_7582	chr2	42530502	42532004	+	0	NA	intron (NM_053011, intron 1 of 90)	intron (NM_053011, intron 1 of 90)	-83685	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
chipseq_peak_11512	chr6	54704742	54706557	+	0	NA	Intergenic	Intergenic	24025	NM_001289741	68235	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding
chipseq_peak_1921	chr10	106010047	106010686	+	0	NA	Intergenic	Intergenic	168887	NM_025602	52713	Mm.339224	NM_025602		Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding
chipseq_peak_4700	chr14	115753984	115754555	+	0	NA	intron (NM_175500, intron 6 of 7)	B3|SINE|B2	-344717	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA
chipseq_peak_9742	chr4	38854340	38854699	+	0	NA	Intergenic	L1M4|LINE|L1	-595774	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
chipseq_peak_4798	chr15	12024794	12025224	+	0	NA	Intergenic	Intergenic	-29002	NM_011294	20024	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding
chipseq_peak_5013	chr15	40393503	40393878	+	0	NA	Intergenic	Intergenic	133587	NR_046185	432945	Mm.321981	NR_046185	ENSMUSG00000056332	Gm16294	EG432945|OTTMUSG00000033304	predicted gene 16294	ncRNA
chipseq_peak_4869	chr15	20037879	20040051	+	0	NA	Intergenic	L1MEd|LINE|L1	627785	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_3146	chr12	72263218	72263543	+	0	NA	intron (NM_001286448, intron 1 of 6)	intron (NM_001286448, intron 1 of 6)	-26653	NM_001007596	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding
chipseq_peak_11158	chr6	8935627	8936038	+	0	NA	Intergenic	Intergenic	-14187	NM_008751	18231	Mm.46954	NM_008751		Nxph1	C130005L03Rik	neurexophilin 1	protein-coding
chipseq_peak_440	chr1	63190833	63191437	+	0	NA	intron (NM_146250, intron 2 of 2)	intron (NM_146250, intron 2 of 2)	-9223	NM_001285936	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding
chipseq_peak_7750	chr2	57614419	57615134	+	0	NA	Intergenic	Intergenic	376394	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding
chipseq_peak_8526	chr3	24325689	24326572	+	0	NA	Intergenic	Intergenic	1827177	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_2373	chr11	61175133	61175966	+	0	NA	promoter-TSS (NM_001004143)	promoter-TSS (NM_001004143)	-490	NM_001004143	216825	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding
chipseq_peak_10777	chr5	89056353	89056894	+	0	NA	intron (NM_018760, intron 6 of 25)	intron (NM_018760, intron 6 of 25)	169363	NM_001197147	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding
chipseq_peak_1451	chr10	36316141	36316801	+	0	NA	Intergenic	Intergenic	-190336	NM_001253355	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chipseq_peak_3931	chr13	97767978	97768789	+	0	NA	Intergenic	Intergenic	208383	NR_046157	328314	Mm.138047	NR_046157		Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA
chipseq_peak_13171	chr8	107684782	107685245	+	0	NA	Intergenic	Intergenic	-96531	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding
chipseq_peak_5721	chr16	47794191	47795040	+	0	NA	Intergenic	Intergenic	-489120	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_2349	chr11	50472041	50473328	+	0	NA	Intergenic	L1M7|LINE|L1	-41573	NM_172557	216724	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
chipseq_peak_12069	chr7	37873794	37874643	+	0	NA	Intergenic	Intergenic	-104466	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding
chipseq_peak_4717	chr14	117536492	117537223	+	0	NA	intron (NM_011821, intron 3 of 8)	intron (NM_011821, intron 3 of 8)	416990	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA
chipseq_peak_10378	chr5	30738158	30739014	+	0	NA	intron (NM_023047, intron 1 of 12)	intron (NM_023047, intron 1 of 12)	26691	NM_023047	65254	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding
chipseq_peak_1534	chr10	47475842	47476250	+	0	NA	Intergenic	RMER6A|LTR|ERVK	1231297	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA
chipseq_peak_12683	chr8	23270697	23271410	+	0	NA	Intergenic	Intergenic	-13973	NM_020585	57437	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding
chipseq_peak_8422	chr2	180860870	180861935	+	0	NA	Intergenic	Intergenic	-32638	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA
chipseq_peak_7875	chr2	69777693	69778927	+	0	NA	intron (NM_001077684, intron 4 of 8)	intron (NM_001077684, intron 4 of 8)	11176	NM_001077684	75051	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding
chipseq_peak_9692	chr4	31722572	31723541	+	0	NA	Intergenic	Intergenic	-241051	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_401	chr1	56907955	56910120	+	0	NA	intron (NM_139146, intron 3 of 10)	(CAAA)n|Simple_repeat|Simple_repeat	62297	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding
chipseq_peak_1684	chr10	69534681	69535878	+	0	NA	intron (NM_170730, intron 1 of 17)	intron (NM_170730, intron 1 of 17)	1571	NM_170688	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_3064	chr12	63791572	63794047	+	0	NA	Intergenic	Intergenic	682089	NM_001163271	623046	Mm.189552	NM_001163271	ENSMUSG00000043060	Fscb	EG623046	fibrous sheath CABYR binding protein	protein-coding
chipseq_peak_3009	chr12	57145780	57146123	+	0	NA	intron (NM_172577, intron 1 of 9)	intron (NM_172577, intron 1 of 9)	14692	NM_001167976	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding
chipseq_peak_954	chr1	157328291	157329338	+	0	NA	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-83538	NR_027984	69953	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA
chipseq_peak_5033	chr15	42822748	42823531	+	0	NA	Intergenic	Intergenic	-146162	NM_009640	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
chipseq_peak_1300	chr10	16171079	16171854	+	0	NA	Intergenic	Intergenic	379689	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA
chipseq_peak_10286	chr5	13398750	13401298	+	0	NA	exon (NM_001243072, exon 2 of 18)	exon (NM_001243072, exon 2 of 18)	715	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
chipseq_peak_3082	chr12	66724270	66725327	+	0	NA	intron (NM_207010, intron 3 of 15)	L1_Mus3|LINE|L1	-440397	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding
chipseq_peak_4335	chr14	61367264	61367893	+	0	NA	3' UTR (NM_008466, exon 17 of 17)	3' UTR (NM_008466, exon 17 of 17)	-7133	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding
chipseq_peak_8930	chr3	80255409	80257132	+	0	NA	Intergenic	Intergenic	370340	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_12024	chr6	148555821	148556839	+	0	NA	Intergenic	Intergenic	57979	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
chipseq_peak_2193	chr11	25155401	25158664	+	0	NA	Intergenic	Intergenic	-169075	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_3367	chr12	119440389	119441138	+	0	NA	Intergenic	Intergenic	-2647	NM_001163136	238455	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding
chipseq_peak_609	chr1	92386599	92387433	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	77526	NR_105865	102465542		NR_105865	ENSMUSG00000098288	Mir6900	Gm27708|mmu-mir-6900	microRNA 6900	ncRNA
chipseq_peak_1049	chr1	171383062	171383395	+	0	NA	intron (NM_001122680, intron 3 of 7)	intron (NM_001122680, intron 3 of 7)	-5732	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding
chipseq_peak_13195	chr8	112632185	112632551	+	0	NA	intron (NM_130457, intron 2 of 23)	L1M4|LINE|L1	62325	NM_130457	170571	Mm.209232	NM_130457	ENSMUSG00000031772	Cntnap4	Caspr4|E130114F09Rik	contactin associated protein-like 4	protein-coding
chipseq_peak_8952	chr3	81764456	81765686	+	0	NA	Intergenic	Intergenic	-167545	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
chipseq_peak_7975	chr2	92198184	92199312	+	0	NA	intron (NM_001109691, intron 2 of 18)	intron (NM_001109691, intron 2 of 18)	6771	NR_035480	100316756		NR_035480	ENSMUSG00000088639	Mir1955	mir-1955|mmu-mir-1955	microRNA 1955	ncRNA
chipseq_peak_2663	chr12	7291453	7291957	+	0	NA	Intergenic	Intergenic	88625	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_12987	chr8	68839060	68839754	+	0	NA	Intergenic	Intergenic	-41148	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding
chipseq_peak_6070	chr16	82943535	82943967	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-1427392	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
chipseq_peak_3657	chr13	58588621	58588998	+	0	NA	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	22068	NM_022317	114304	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding
chipseq_peak_5473	chr16	5836732	5837126	+	0	NA	Intergenic	Intergenic	-47864	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_7334	chr19	58625363	58625999	+	0	NA	intron (NR_038136, intron 1 of 2)	intron (NR_038136, intron 1 of 2)	19352	NR_038136	69055	Mm.396318	NR_038136	ENSMUSG00000100001	1810007D17Rik	-	RIKEN cDNA 1810007D17 gene	ncRNA
chipseq_peak_3466	chr13	20270052	20270850	+	0	NA	intron (NM_080288, intron 7 of 21)	intron (NM_080288, intron 7 of 21)	179944	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding
chipseq_peak_1462	chr10	37563666	37564067	+	0	NA	Intergenic	Intergenic	-424940	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
chipseq_peak_1811	chr10	95034962	95036033	+	0	NA	Intergenic	L1MB7|LINE|L1	-90919	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding
chipseq_peak_5852	chr16	64160888	64161958	+	0	NA	Intergenic	Intergenic	-297266	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_5436	chr15	96587934	96588351	+	0	NA	intron (NM_134086, intron 8 of 15)	intron (NM_134086, intron 8 of 15)	53820	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding
chipseq_peak_1661	chr10	68146841	68147118	+	0	NA	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	131747	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding
chipseq_peak_5948	chr16	73020816	73021639	+	0	NA	intron (NM_019413, intron 24 of 28)	intron (NM_019413, intron 24 of 28)	358078	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_8758	chr3	56180804	56181317	+	0	NA	intron (NM_030595, intron 1 of 57)	intron (NM_030595, intron 1 of 57)	2641	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_3176	chr12	74978784	74979422	+	0	NA	intron (NM_172805, intron 8 of 10)	intron (NM_172805, intron 8 of 10)	198229	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding
chipseq_peak_14134	chrX	164952375	164953014	+	0	NA	intron (NM_001290523, intron 7 of 14)	intron (NM_001290523, intron 7 of 14)	27681	NM_029730	76763	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding
chipseq_peak_4493	chr14	86683791	86685234	+	0	NA	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	438542	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
chipseq_peak_3002	chr12	54222795	54223668	+	0	NA	Intergenic	Intergenic	-10384	NR_108033	73592	Mm.416874	NR_108033		1700104L18Rik	-	RIKEN cDNA 1700104L18 gene	ncRNA
chipseq_peak_5671	chr16	42142778	42143138	+	0	NA	intron (NM_175548, intron 4 of 5)	T-rich|Low_complexity|Low_complexity	160511	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
chipseq_peak_4857	chr15	18994473	18995204	+	0	NA	intron (NM_009865, intron 8 of 11)	intron (NM_009865, intron 8 of 11)	174509	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_13066	chr8	89402519	89403036	+	0	NA	Intergenic	Intergenic	-358615	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding
chipseq_peak_5834	chr16	63127599	63127881	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	273433	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
chipseq_peak_304	chr1	47103303	47104327	+	0	NA	Intergenic	Intergenic	-250306	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding
chipseq_peak_13493	chr9	42206793	42207254	+	0	NA	intron (NR_040754, intron 1 of 6)	intron (NR_040754, intron 1 of 6)	2208	NR_040754	78194	Mm.251457	NR_040754		4930546K05Rik	-	RIKEN cDNA 4930546K05 gene	ncRNA
chipseq_peak_3490	chr13	26258700	26259849	+	0	NA	Intergenic	L1MC4|LINE|L1	53132	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA
chipseq_peak_8570	chr3	29580810	29583267	+	0	NA	intron (NM_001167748, intron 5 of 12)	intron (NM_001167748, intron 5 of 12)	-54706	NR_105796	102466637		NR_105796	ENSMUSG00000098315	Mir21b	Gm27951|mmu-mir-21b	microRNA 21b	ncRNA
chipseq_peak_10938	chr5	116313229	116314123	+	0	NA	intron (NR_110475, intron 1 of 2)	intron (NR_110475, intron 1 of 2)	1316	NR_110475	77846	Mm.404871	NR_110475	ENSMUSG00000086715	B230112J18Rik	-	RIKEN cDNA B230112J18 gene	ncRNA
chipseq_peak_3540	chr13	38407781	38408194	+	0	NA	intron (NM_007556, intron 1 of 6)	intron (NM_007556, intron 1 of 6)	53806	NR_131033	75854	Mm.417810	NR_131033		4930579J19Rik	-	RIKEN cDNA 4930579J19 gene	ncRNA
chipseq_peak_4244	chr14	33575727	33576260	+	0	NA	Intergenic	L1MD2|LINE|L1	-13277	NM_008978	19256	Mm.8019	NM_008978	ENSMUSG00000021940	Ptpn20	typ	protein tyrosine phosphatase, non-receptor type 20	protein-coding
chipseq_peak_7110	chr19	19343825	19345166	+	0	NA	Intergenic	Intergenic	-233299	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
chipseq_peak_9574	chr4	19056077	19056337	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	-224643	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding
chipseq_peak_13448	chr9	34913471	34913807	+	0	NA	intron (NM_001190914, intron 3 of 16)	intron (NM_001190914, intron 3 of 16)	-203089	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA
chipseq_peak_9297	chr3	141110723	141111573	+	0	NA	Intergenic	Intergenic	101207	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding
chipseq_peak_3209	chr12	79502657	79503559	+	0	NA	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	205757	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 homolog B	protein-coding
chipseq_peak_5304	chr15	71195069	71195873	+	0	NA	Intergenic	Intergenic	532367	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
chipseq_peak_8505	chr3	20776028	20777397	+	0	NA	Intergenic	X6A_LINE|LINE|CR1	-409535	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
chipseq_peak_7164	chr19	24621965	24622452	+	0	NA	Intergenic	T-rich|Low_complexity|Low_complexity	-51800	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding
chipseq_peak_5630	chr16	39675650	39676365	+	0	NA	Intergenic	Intergenic	773662	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_5995	chr16	75291163	75291605	+	0	NA	Intergenic	Intergenic	294677	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_12767	chr8	40210987	40211293	+	0	NA	intron (NR_035426, intron 1 of 5)	intron (NR_035426, intron 1 of 5)	16647	NR_035426	100316806		NR_035426	ENSMUSG00000080653	Mir669e	Mirn669e|mmu-mir-669e	microRNA 669e	ncRNA
chipseq_peak_50	chr1	15658070	15658780	+	0	NA	intron (NM_001098528, intron 1 of 1)	intron (NM_001098528, intron 1 of 1)	-147221	NM_001286628	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding
chipseq_peak_11870	chr6	115124707	115125536	+	0	NA	Intergenic	Intergenic	9714	NR_132436	100503783	Mm.102390	NR_132436	ENSMUSG00000097486	Gm17733	-	predicted gene, 17733	ncRNA
chipseq_peak_5916	chr16	70868180	70869622	+	0	NA	Intergenic	Intergenic	252476	NR_040474	52645	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA
chipseq_peak_4752	chr14	123219542	123220055	+	0	NA	Intergenic	Intergenic	50612	NR_045143	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
chipseq_peak_9416	chr3	155662271	155663617	+	0	NA	Intergenic	Intergenic	-313410	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
chipseq_peak_6582	chr18	12570033	12570512	+	0	NA	intron (NM_010680, intron 68 of 74)	intron (NM_010680, intron 68 of 74)	-73261	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding
chipseq_peak_4002	chr13	107207659	107208539	+	0	NA	Intergenic	Intergenic	185529	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA
chipseq_peak_2876	chr12	39587133	39588006	+	0	NA	Intergenic	T-rich|Low_complexity|Low_complexity	449807	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
chipseq_peak_13745	chr9	89277890	89278743	+	0	NA	Intergenic	Intergenic	67126	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding
chipseq_peak_6064	chr16	81201952	81202852	+	0	NA	intron (NM_010954, intron 1 of 15)	intron (NM_010954, intron 1 of 15)	1705	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
chipseq_peak_8264	chr2	141700597	141701125	+	0	NA	intron (NM_001013802, intron 6 of 18)	intron (NM_001013802, intron 6 of 18)	-1029385	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_1251	chr10	9457958	9458418	+	0	NA	Intergenic	Intergenic	217020	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
chipseq_peak_1939	chr10	106881161	106881780	+	0	NA	intron (NM_001205341, intron 21 of 31)	intron (NM_001205341, intron 21 of 31)	242194	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding
chipseq_peak_7839	chr2	65845064	65845829	+	0	NA	promoter-TSS (NM_001290666)	promoter-TSS (NM_001290666)	-321	NM_153409	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding
chipseq_peak_11921	chr6	136194362	136195027	+	0	NA	Intergenic	Intergenic	-21183	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding
chipseq_peak_2035	chr10	118973350	118973875	+	0	NA	Intergenic	Intergenic	-46469	NR_110482	216377	Mm.208936	NR_110482		Gm38403	C230029M16	predicted gene, 38403	ncRNA
chipseq_peak_9541	chr4	15012474	15012999	+	0	NA	intron (NM_178617, intron 5 of 12)	intron (NM_178617, intron 5 of 12)	82095	NM_001243100	100038514	Mm.331495	NM_001243100		Gm11837	OTTMUSG00000004551	predicted gene 11837	protein-coding
chipseq_peak_1389	chr10	27494042	27495638	+	0	NA	intron (NM_008481, intron 1 of 63)	intron (NM_008481, intron 1 of 63)	104974	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_12058	chr7	36331044	36331833	+	0	NA	Intergenic	Intergenic	-366680	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding
chipseq_peak_13694	chr9	77254511	77255239	+	0	NA	intron (NM_027150, intron 1 of 7)	Lx3C|LINE|L1	92995	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding
chipseq_peak_12642	chr8	12165652	12165998	+	0	NA	Intergenic	Intergenic	-219946	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Gm5607	EG434280	predicted gene 5607	ncRNA
chipseq_peak_3234	chr12	82961813	82962208	+	0	NA	intron (NM_001310478, intron 2 of 17)	MLT1J|LTR|ERVL-MaLR	-22855	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA
chipseq_peak_11822	chr6	108145279	108146350	+	0	NA	intron (NM_145937, intron 6 of 8)	intron (NM_145937, intron 6 of 8)	39769	NM_145937	58911	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding
chipseq_peak_1896	chr10	102594004	102594804	+	0	NA	Intergenic	Intergenic	82182	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding
chipseq_peak_3623	chr13	48992549	48993341	+	0	NA	Intergenic	Intergenic	24833	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA
chipseq_peak_4722	chr14	117981521	117981930	+	0	NA	Intergenic	RLTR34C_MM|LTR|ERVK	-27878	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA
chipseq_peak_6220	chr17	30287066	30287369	+	0	NA	intron (NM_172618, intron 8 of 11)	intron (NM_172618, intron 8 of 11)	-30682	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA
chipseq_peak_9457	chr4	6263395	6263654	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	12107	NM_007824	13122	Mm.57029	NM_007824	ENSMUSG00000028240	Cyp7a1	-	cytochrome P450, family 7, subfamily a, polypeptide 1	protein-coding
chipseq_peak_12945	chr8	64344941	64346777	+	0	NA	Intergenic	Intergenic	-139866	NM_009390	21892	Mm.418367	NM_009390	ENSMUSG00000053626	Tll1	Tll|Tll-1	tolloid-like	protein-coding
chipseq_peak_7567	chr2	39142314	39143295	+	0	NA	intron (NM_178778, intron 2 of 17)	ID_B1|SINE|B4	19431	NR_033526	100042584	Mm.451696	NR_033526	ENSMUSG00000082315	Gm16523	A130054J05Rik	mitochondrial ribosomal protein L40 pseudogene	pseudo
chipseq_peak_2539	chr11	101726731	101727083	+	0	NA	Intergenic	Intergenic	-6049	NM_144831	217207	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding
chipseq_peak_4407	chr14	74538179	74538654	+	0	NA	Intergenic	Intergenic	-102424	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding
chipseq_peak_8895	chr3	76881547	76881944	+	0	NA	Intergenic	Intergenic	806162	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding
chipseq_peak_10072	chr4	99022031	99022585	+	0	NA	intron (NM_001290636, intron 15 of 48)	intron (NM_001290636, intron 15 of 48)	-8646	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding
chipseq_peak_10598	chr5	66338226	66338609	+	0	NA	promoter-TSS (NM_001201416)	promoter-TSS (NM_001201416)	-752	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
chipseq_peak_3496	chr13	28464993	28465921	+	0	NA	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	245416	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA
chipseq_peak_8639	chr3	41233451	41233869	+	0	NA	Intergenic	Intergenic	-150614	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding
chipseq_peak_11717	chr6	98767765	98768580	+	0	NA	Intergenic	Intergenic	260126	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
chipseq_peak_9783	chr4	49212942	49214611	+	0	NA	intron (NM_178756, intron 2 of 7)	intron (NM_178756, intron 2 of 7)	154314	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding
chipseq_peak_6944	chr18	67006227	67006728	+	0	NA	Intergenic	Intergenic	-56516	NR_040461	100503582	Mm.329508	NR_040461		Gm19784	-	predicted gene, 19784	ncRNA
chipseq_peak_4950	chr15	29734295	29734637	+	0	NA	Intergenic	L1MA9|LINE|L1	-438127	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding
chipseq_peak_1170	chr1	187997227	187998016	+	0	NA	promoter-TSS (NM_011935)	promoter-TSS (NM_011935)	-206	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding
chipseq_peak_7306	chr19	54801130	54801578	+	0	NA	Intergenic	Intergenic	298093	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
chipseq_peak_1935	chr10	106625528	106626368	+	0	NA	intron (NM_001205341, intron 3 of 31)	intron (NM_001205341, intron 3 of 31)	-23468	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA
chipseq_peak_10460	chr5	45197962	45198593	+	0	NA	intron (NR_131933, intron 4 of 5)	intron (NR_131933, intron 4 of 5)	226123	NR_131933	52401	Mm.33854	NR_131933		D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA
chipseq_peak_12961	chr8	65922012	65923050	+	0	NA	intron (NM_001166372, intron 2 of 7)	Charlie24|DNA|hAT-Charlie	304006	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
chipseq_peak_1199	chr1	193255499	193255809	+	0	NA	intron (NM_008288, intron 1 of 6)	L1MA4|LINE|L1	8391	NM_008288	15483	Mm.28328	NM_008288	ENSMUSG00000016194	Hsd11b1	-	hydroxysteroid 11-beta dehydrogenase 1	protein-coding
chipseq_peak_1241	chr10	8577576	8578420	+	0	NA	Intergenic	Intergenic	-59173	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding
chipseq_peak_6934	chr18	66653704	66654141	+	0	NA	Intergenic	Intergenic	149744	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA
chipseq_peak_6061	chr16	80556862	80557571	+	0	NA	Intergenic	Intergenic	-643481	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
chipseq_peak_14111	chrX	158591088	158591836	+	0	NA	Intergenic	Intergenic	-548265	NM_001310719	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding
chipseq_peak_3565	chr13	43108850	43109271	+	0	NA	intron (NM_001302635, intron 9 of 13)	intron (NM_001302635, intron 9 of 13)	-13779	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_12006	chr6	145598785	145599194	+	0	NA	Intergenic	Intergenic	-16974	NM_009449	22147	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding
chipseq_peak_9617	chr4	24247744	24249921	+	0	NA	Intergenic	LFSINE_Vert|SINE|tRNA	-247630	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_8364	chr2	162082318	162083701	+	0	NA	intron (NM_001291150, intron 7 of 30)	intron (NM_001291150, intron 7 of 30)	-307804	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA
chipseq_peak_9856	chr4	67590024	67590640	+	0	NA	Intergenic	Intergenic	762781	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding
chipseq_peak_13634	chr9	61747537	61747886	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	166799	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding
chipseq_peak_13220	chr8	116665320	116665542	+	0	NA	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	67560	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding
chipseq_peak_1504	chr10	43395815	43396264	+	0	NA	intron (NM_027772, intron 6 of 7)	intron (NM_027772, intron 6 of 7)	-83101	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding
chipseq_peak_4856	chr15	18987590	18988137	+	0	NA	intron (NM_009865, intron 7 of 11)	intron (NM_009865, intron 7 of 11)	167534	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_6380	chr17	68078682	68079421	+	0	NA	Intergenic	Intergenic	-74943	NM_172964	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding
chipseq_peak_1714	chr10	73716898	73717420	+	0	NA	Intergenic	Intergenic	-104708	NM_001142747	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
chipseq_peak_8762	chr3	56393183	56393759	+	0	NA	Intergenic	RLTR26D_MM|LTR|ERVK	-209770	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_6532	chr17	90856866	90857239	+	0	NA	intron (NM_020252, intron 4 of 22)	intron (NM_020252, intron 4 of 22)	-4117	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_14036	chrX	70977801	70978358	+	0	NA	Intergenic	L1MC5|LINE|L1	-72177	NM_001256048	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding
chipseq_peak_10361	chr5	22921889	22922183	+	0	NA	intron (NM_001081231, intron 1 of 3)	intron (NM_001081231, intron 1 of 3)	-175152	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA
chipseq_peak_11519	chr6	55539298	55539677	+	0	NA	Intergenic	Intergenic	87509	NM_001025372	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding
chipseq_peak_3086	chr12	67011289	67011947	+	0	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	210931	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_12319	chr7	91089124	91089861	+	0	NA	Intergenic	Intergenic	-1294	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_4633	chr14	107121194	107122175	+	0	NA	Intergenic	Intergenic	-635164	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
chipseq_peak_12838	chr8	49129988	49130395	+	0	NA	Intergenic	Intergenic	-455501	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_9234	chr3	132131350	132132649	+	0	NA	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	46707	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf homolog 2 (Xenopus laevis)	protein-coding
chipseq_peak_5330	chr15	79243372	79243812	+	0	NA	intron (NM_001045558, intron 6 of 12)	intron (NM_001045558, intron 6 of 12)	11156	NM_020516	57274	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding
chipseq_peak_10385	chr5	32058697	32059491	+	0	NA	intron (NM_181279, intron 13 of 13)	intron (NM_181279, intron 13 of 13)	-77378	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding
chipseq_peak_565	chr1	81859299	81859782	+	0	NA	Intergenic	Intergenic	-272376	NR_105762	102466629		NR_105762	ENSMUSG00000098797	Mir6344	Gm27840|mmu-mir-6344	microRNA 6344	ncRNA
chipseq_peak_7830	chr2	65399561	65400448	+	0	NA	Intergenic	Intergenic	-35604	NR_105755	102466151		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA
chipseq_peak_12970	chr8	66948318	66948774	+	0	NA	Intergenic	Intergenic	88329	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 homolog (S. cerevisiae)	protein-coding
chipseq_peak_10649	chr5	71962738	71963778	+	0	NA	intron (NM_008069, intron 4 of 8)	intron (NM_008069, intron 4 of 8)	204925	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding
chipseq_peak_4499	chr14	86861171	86862065	+	0	NA	intron (NM_019670, intron 21 of 27)	intron (NM_019670, intron 21 of 27)	279496	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
chipseq_peak_5710	chr16	46848142	46848940	+	0	NA	Intergenic	Intergenic	-351574	NM_021496	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
chipseq_peak_9453	chr4	6027790	6028322	+	0	NA	Intergenic	Intergenic	-163049	NM_026534	68053	Mm.404043	NM_026534		Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding
chipseq_peak_7890	chr2	73734719	73735147	+	0	NA	intron (NM_001113246, intron 1 of 12)	intron (NM_001113246, intron 1 of 12)	40413	NM_001166603	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding
chipseq_peak_4409	chr14	74733167	74733412	+	0	NA	intron (NM_001285423, intron 1 of 8)	intron (NM_001285423, intron 1 of 8)	992	NM_001285423	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding
chipseq_peak_1796	chr10	92615857	92616223	+	0	NA	Intergenic	Intergenic	106378	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding
chipseq_peak_7631	chr2	44421222	44422019	+	0	NA	Intergenic	Intergenic	-356296	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_12424	chr7	109231650	109232188	+	0	NA	Intergenic	Intergenic	-56712	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding
chipseq_peak_6927	chr18	66125413	66127813	+	0	NA	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	92720	NR_030467	751558		NR_030467	ENSMUSG00000076147	Mir694	Mirn694|mir-694|mmu-mir-694	microRNA 694	ncRNA
chipseq_peak_12171	chr7	63164671	63165060	+	0	NA	intron (NM_007390, intron 2 of 9)	intron (NM_007390, intron 2 of 9)	47661	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding
chipseq_peak_13880	chr9	111774199	111774787	+	0	NA	Intergenic	L1_Rod|LINE|L1	-84277	NM_016853	20840	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding
chipseq_peak_12745	chr8	37291480	37291848	+	0	NA	Intergenic	Intergenic	-267426	NR_126063	414128	Mm.450976	NR_126063		G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA
chipseq_peak_8268	chr2	141854442	141854831	+	0	NA	intron (NM_001013802, intron 8 of 18)	Lx8|LINE|L1	1046828	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_7011	chr18	74913422	74914071	+	0	NA	Intergenic	L1M4|LINE|L1	47517	NM_010720	16891	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding
chipseq_peak_4599	chr14	102902854	102903436	+	0	NA	Intergenic	Intergenic	79487	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
chipseq_peak_7528	chr2	29468362	29469303	+	0	NA	intron (NM_029615, intron 3 of 4)	intron (NM_029615, intron 3 of 4)	6462	NR_105753	102465170		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA
chipseq_peak_6885	chr18	56324210	56324762	+	0	NA	Intergenic	LTR84a|LTR|ERVL	-107646	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
chipseq_peak_14122	chrX	160866590	160867330	+	0	NA	intron (NM_001024624, intron 4 of 18)	intron (NM_001024624, intron 4 of 18)	40092	NM_001001496	414089	Mm.123113	NM_001001496	ENSMUSG00000055691	Gja6	A530015O12Rik|Cnx33|Cx33|Gja-6	gap junction protein, alpha 6	protein-coding
chipseq_peak_3229	chr12	82670113	82670944	+	0	NA	intron (NM_001310478, intron 2 of 17)	MER58A|DNA|hAT-Charlie	53029	NM_001282061	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding
chipseq_peak_4017	chr13	108041388	108041761	+	0	NA	Intergenic	Intergenic	-2900	NM_001048250	75616	Mm.491164	NM_001048250		Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding
chipseq_peak_3507	chr13	29273663	29274636	+	0	NA	intron (NR_131896, intron 15 of 16)	intron (NR_131896, intron 15 of 16)	257894	NR_045073	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
chipseq_peak_13608	chr9	59277623	59278256	+	0	NA	Intergenic	L1ME3G|LINE|L1	-13633	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding
chipseq_peak_10832	chr5	98975988	98976854	+	0	NA	intron (NM_008926, intron 9 of 18)	intron (NM_008926, intron 9 of 18)	60658	NM_008926	19092	Mm.263002	NM_008926	ENSMUSG00000029334	Prkg2	AW212535|CGKII|Prkgr2|cGK-II	protein kinase, cGMP-dependent, type II	protein-coding
chipseq_peak_4913	chr15	24504024	24504320	+	0	NA	Intergenic	Intergenic	909592	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
chipseq_peak_10455	chr5	45111530	45112783	+	0	NA	intron (NR_131933, intron 5 of 5)	(CA)n|Simple_repeat|Simple_repeat	145955	NR_073013	75783	Mm.218472	NR_073013	ENSMUSG00000062496	4930431F12Rik	-	RIKEN cDNA 4930431F12 gene	ncRNA
chipseq_peak_6287	chr17	50814207	50814655	+	0	NA	intron (NM_028162, intron 15 of 21)	intron (NM_028162, intron 15 of 21)	115750	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding
chipseq_peak_13231	chr8	119084955	119085368	+	0	NA	intron (NM_019707, intron 6 of 13)	intron (NM_019707, intron 6 of 13)	-259377	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding
chipseq_peak_606	chr1	91752954	91753269	+	0	NA	Intergenic	L1MEc|LINE|L1	-48350	NM_007855	13345	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding
chipseq_peak_4551	chr14	93701140	93701684	+	0	NA	intron (NM_001081377, intron 1 of 3)	intron (NM_001081377, intron 1 of 3)	187476	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_12695	chr8	28655746	28656806	+	0	NA	intron (NM_153135, intron 17 of 17)	intron (NM_153135, intron 17 of 17)	563360	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_575	chr1	83066460	83067004	+	0	NA	Intergenic	Intergenic	5802	NM_027778	71386	Mm.389133	NM_027778	ENSMUSG00000101315	Krtap28-13	5530401N06Rik	keratin associated protein 28-13	protein-coding
chipseq_peak_2830	chr12	34500239	34500537	+	0	NA	intron (NM_024124, intron 2 of 11)	intron (NM_024124, intron 2 of 11)	28501	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
chipseq_peak_1821	chr10	95679939	95680597	+	0	NA	Intergenic	Intergenic	-116101	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding
chipseq_peak_352	chr1	54838220	54838706	+	0	NA	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	87924	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chipseq_peak_12455	chr7	114042752	114043830	+	0	NA	TTS (NM_145584)	TTS (NM_145584)	74490	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene homolog 2	protein-coding
chipseq_peak_10594	chr5	65178574	65178979	+	0	NA	Intergenic	Intergenic	-20920	NM_153391	213081	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding
chipseq_peak_4463	chr14	80263182	80263479	+	0	NA	Intergenic	Intergenic	263028	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_424	chr1	59468950	59469428	+	0	NA	Intergenic	MER31A|LTR|ERV1	-12958	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled homolog 7 (Drosophila)	protein-coding
chipseq_peak_601	chr1	89689675	89690334	+	0	NA	intron (NM_178119, intron 9 of 17)	intron (NM_178119, intron 9 of 17)	-6112	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA
chipseq_peak_11472	chr6	49534504	49535527	+	0	NA	Intergenic	Intergenic	139411	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding
chipseq_peak_13038	chr8	82984985	82986060	+	0	NA	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	122166	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding
chipseq_peak_9114	chr3	117183879	117184324	+	0	NA	Intergenic	L1MC3|LINE|L1	-106336	NR_038029	433646	Mm.158997	NR_038029	ENSMUSG00000028009	1700061I17Rik	-	RIKEN cDNA 1700061I17 gene	ncRNA
chipseq_peak_6636	chr18	21880347	21880893	+	0	NA	intron (NM_027616, intron 21 of 22)	intron (NM_027616, intron 21 of 22)	-228252	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding
chipseq_peak_1857	chr10	99347674	99348111	+	0	NA	Intergenic	Lx9|LINE|L1	84661	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chipseq_peak_4911	chr15	23842932	23843474	+	0	NA	Intergenic	Intergenic	806740	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_9183	chr3	122807367	122807842	+	0	NA	intron (NM_153422, intron 11 of 20)	intron (NM_153422, intron 11 of 20)	-5624	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA
chipseq_peak_9126	chr3	117785756	117786047	+	0	NA	intron (NM_001190156, intron 7 of 7)	intron (NM_001190156, intron 7 of 7)	83035	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_13842	chr9	104840977	104841709	+	0	NA	intron (NM_028719, intron 2 of 15)	L1MD1|LINE|L1	-211925	NM_053159	94062	Mm.29746	NM_053159		Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding
chipseq_peak_1211	chr1	194019331	194019783	+	0	NA	Intergenic	Intergenic	203202	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_9997	chr4	85486156	85486925	+	0	NA	Intergenic	Intergenic	281084	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding
chipseq_peak_4465	chr14	80377193	80377625	+	0	NA	Intergenic	Intergenic	377107	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_11650	chr6	87696061	87696929	+	0	NA	Intergenic	Intergenic	-5648	NR_045482	613264	Mm.480195	NR_045482	ENSMUSG00000089997	1810020O05Rik	-	Riken cDNA 1810020O05 gene	ncRNA
chipseq_peak_7086	chr19	14340656	14341210	+	0	NA	Intergenic	Intergenic	97573	NR_003027	19862		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA
chipseq_peak_1086	chr1	176961731	176962424	+	0	NA	intron (NM_029756, intron 16 of 17)	intron (NM_029756, intron 16 of 17)	-125944	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_12630	chr8	10450688	10451515	+	0	NA	intron (NM_001081397, intron 20 of 35)	intron (NM_001081397, intron 20 of 35)	297178	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
chipseq_peak_9608	chr4	23862205	23862875	+	0	NA	Intergenic	L1MC1|LINE|L1	-633922	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_8785	chr3	60644486	60646059	+	0	NA	Intergenic	Intergenic	144093	NM_001310514	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding
chipseq_peak_224	chr1	38185653	38186045	+	0	NA	intron (NM_001290814, intron 18 of 21)	intron (NM_001290814, intron 18 of 21)	-56187	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1 homolog (S. cerevisiae)	protein-coding
chipseq_peak_8394	chr2	170642404	170642988	+	0	NA	Intergenic	Intergenic	-40679	NR_027825	67637	Mm.158163	NM_026287	ENSMUSG00000043583	4930470P17Rik	-	RIKEN cDNA 4930470P17 gene	ncRNA
chipseq_peak_11911	chr6	128639439	128639665	+	0	NA	Intergenic	RLTR21|LTR|ERVK	-16618	NM_001159902	17057	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding
chipseq_peak_2140	chr11	13237232	13237614	+	0	NA	Intergenic	Intergenic	-772463	NM_001282993	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
chipseq_peak_4818	chr15	13667231	13667994	+	0	NA	Intergenic	B4|SINE|B4	-493937	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_10916	chr5	112174429	112174846	+	0	NA	Intergenic	Intergenic	-32126	NR_045378	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA
chipseq_peak_12910	chr8	57926852	57927763	+	0	NA	intron (NM_175032, intron 6 of 11)	intron (NM_175032, intron 6 of 11)	-274252	NM_001167981	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
chipseq_peak_4478	chr14	82898850	82899452	+	0	NA	Intergenic	L1MB8|LINE|L1	-1544412	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
chipseq_peak_3744	chr13	80612703	80614311	+	0	NA	Intergenic	Intergenic	-269915	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding
chipseq_peak_12445	chr7	112405589	112405994	+	0	NA	intron (NM_027587, intron 7 of 9)	L3|LINE|CR1	-21915	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding
chipseq_peak_11595	chr6	75576852	75577647	+	0	NA	Intergenic	Intergenic	-1665468	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_3420	chr13	10052943	10053791	+	0	NA	intron (NM_033269, intron 3 of 4)	PB1D10|SINE|Alu	-288053	NM_144516	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding
chipseq_peak_9520	chr4	13410916	13412310	+	0	NA	Intergenic	Intergenic	-331689	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_13305	chr9	10652061	10652384	+	0	NA	intron (NM_001170787, intron 1 of 24)	intron (NM_001170787, intron 1 of 24)	252504	NM_001033359	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding
chipseq_peak_8950	chr3	81751591	81752432	+	0	NA	Intergenic	Intergenic	-180605	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
chipseq_peak_377	chr1	56210086	56212203	+	0	NA	Intergenic	Intergenic	192166	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_13630	chr9	61370160	61371598	+	0	NA	Intergenic	CpG	-1487	NM_009389	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_3851	chr13	89246338	89246620	+	0	NA	intron (NM_010103, intron 8 of 9)	intron (NM_010103, intron 8 of 9)	-294157	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding
chipseq_peak_10257	chr5	6179213	6180243	+	0	NA	Intergenic	Intergenic	-430411	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding
chipseq_peak_13857	chr9	106476716	106477066	+	0	NA	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	58	NM_145619	235587	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding
chipseq_peak_13323	chr9	16021914	16022948	+	0	NA	intron (NM_001080814, intron 5 of 24)	intron (NM_001080814, intron 5 of 24)	-147875	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
chipseq_peak_11811	chr6	106805025	106805475	+	0	NA	Intergenic	Intergenic	-5163	NM_021449	58799	Mm.290085	NM_021449		Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding
chipseq_peak_10340	chr5	19745126	19746136	+	0	NA	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-161887	NM_001170745	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
chipseq_peak_6535	chr17	91085212	91087097	+	0	NA	intron (NM_020252, intron 2 of 22)	intron (NM_020252, intron 2 of 22)	6648	NM_020252	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
chipseq_peak_4226	chr14	29481700	29482383	+	0	NA	intron (NM_009785, intron 3 of 37)	intron (NM_009785, intron 3 of 37)	239823	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding
chipseq_peak_10677	chr5	74831873	74832503	+	0	NA	Intergenic	Intergenic	-117006	NR_045866	619945	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA
chipseq_peak_13451	chr9	35453260	35453699	+	0	NA	intron (NM_021339, intron 2 of 18)	intron (NM_021339, intron 2 of 18)	1403	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding
chipseq_peak_12223	chr7	74906653	74908069	+	0	NA	Intergenic	Intergenic	-122850	NR_131122	75205	Mm.399304	NR_131122		4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA
chipseq_peak_6476	chr17	83451746	83452192	+	0	NA	intron (NM_001286567, intron 14 of 23)	intron (NM_001286567, intron 14 of 23)	62364	NM_009187	20463	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding
chipseq_peak_13253	chr8	127059894	127060152	+	0	NA	Intergenic	Intergenic	-4033	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_12666	chr8	16965558	16966244	+	0	NA	intron (NM_053171, intron 3 of 69)	intron (NM_053171, intron 3 of 69)	569484	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
chipseq_peak_9902	chr4	75019935	75020403	+	0	NA	Intergenic	Intergenic	258117	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_2093	chr10	126116158	126117554	+	0	NA	Intergenic	Intergenic	150637	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
chipseq_peak_8822	chr3	66595248	66595923	+	0	NA	Intergenic	Intergenic	-298748	NM_145820	72789	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding
chipseq_peak_13824	chr9	103546999	103547923	+	0	NA	intron (NM_178638, intron 3 of 5)	intron (NM_178638, intron 3 of 5)	-9629	NR_040764	319215	Mm.425597	NR_040764	ENSMUSG00000099616	4932413F04Rik	-	RIKEN cDNA 4932413F04 gene	ncRNA
chipseq_peak_2455	chr11	81582214	81583264	+	0	NA	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	-9200	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding
chipseq_peak_13642	chr9	62924898	62925755	+	0	NA	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	55553	NM_019663	56469	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding
chipseq_peak_11417	chr6	41622245	41622797	+	0	NA	intron (NM_022413, intron 13 of 14)	intron (NM_022413, intron 13 of 14)	13884	NM_022413	64177	Mm.296889	NM_022413	ENSMUSG00000029868	Trpv6	CAT|CaT1|Cac|Ecac2|Otrpc3	transient receptor potential cation channel, subfamily V, member 6	protein-coding
chipseq_peak_8617	chr3	39424706	39425547	+	0	NA	Intergenic	Intergenic	538186	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT tumor suppressor homolog 4 (Drosophila)	protein-coding
chipseq_peak_8395	chr2	170652013	170652574	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-50276	NR_027825	67637	Mm.158163	NM_026287	ENSMUSG00000043583	4930470P17Rik	-	RIKEN cDNA 4930470P17 gene	ncRNA
chipseq_peak_11163	chr6	11512081	11512494	+	0	NA	Intergenic	Intergenic	395159	NM_010886	17992	Mm.415865	NM_010886	ENSMUSG00000029632	Ndufa4	MLRQ	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	protein-coding
chipseq_peak_4081	chr13	113655071	113656106	+	0	NA	Intergenic	Intergenic	8088	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding
chipseq_peak_4327	chr14	60456860	60457368	+	0	NA	Intergenic	Intergenic	78828	NM_028113	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding
chipseq_peak_7058	chr18	89533098	89533746	+	0	NA	intron (NM_001039173, intron 3 of 7)	intron (NM_001039173, intron 3 of 7)	235714	NM_001039173	623279	Mm.447164	NM_001039173		Dok6	Dok-6	docking protein 6	protein-coding
chipseq_peak_8554	chr3	28343576	28344095	+	0	NA	intron (NM_001163007, intron 1 of 31)	intron (NM_001163007, intron 1 of 31)	-76108	NR_130342	100628591		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA
chipseq_peak_8166	chr2	129851132	129852262	+	0	NA	Intergenic	Lx9|LINE|L1	-50238	NR_029452	654409	Mm.305555	NR_029452		4932416H05Rik	-	RIKEN cDNA 4932416H05 gene	ncRNA
chipseq_peak_12575	chr8	4165903	4166521	+	0	NA	promoter-TSS (NM_001039578)	promoter-TSS (NM_001039578)	-355	NM_001039578	213027	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding
chipseq_peak_8763	chr3	56437228	56438219	+	0	NA	Intergenic	Intergenic	-254022	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_7048	chr18	86789698	86790890	+	0	NA	Intergenic	Intergenic	78229	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding
chipseq_peak_7390	chr2	7144781	7145861	+	0	NA	intron (NM_001110231, intron 3 of 15)	intron (NM_001110231, intron 3 of 15)	-64019	NM_001110230	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_625	chr1	95826559	95826818	+	0	NA	Intergenic	Intergenic	-110170	NR_040479	75381	Mm.417807	NR_040479	ENSMUSG00000100777	4930598F16Rik	-	RIKEN cDNA 4930598F16 gene	ncRNA
chipseq_peak_1101	chr1	177135947	177136394	+	0	NA	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	112597	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_3467	chr13	20494510	20494785	+	0	NA	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	21657	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding
chipseq_peak_11658	chr6	92603411	92603872	+	0	NA	intron (NM_001081146, intron 2 of 8)	intron (NM_001081146, intron 2 of 8)	-36275	NM_001134461	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle homolog 2 (Drosophila)	protein-coding
chipseq_peak_3422	chr13	10239032	10239545	+	0	NA	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	121515	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding
chipseq_peak_2351	chr11	52085999	52086647	+	0	NA	Intergenic	Intergenic	-12501	NM_019411	19052	Mm.260288	NM_019411		Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding
chipseq_peak_2012	chr10	115776583	115776963	+	0	NA	Intergenic	Intergenic	-40511	NM_146010	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding
chipseq_peak_13695	chr9	77265031	77266407	+	0	NA	intron (NM_027150, intron 1 of 7)	intron (NM_027150, intron 1 of 7)	82151	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding
chipseq_peak_9628	chr4	25012255	25013066	+	0	NA	Intergenic	Intergenic	39241	NM_030733	81006	Mm.160412	NM_030733	ENSMUSG00000040372	Gpr63	PSP24beta|Psp24-2	G protein-coupled receptor 63	protein-coding
chipseq_peak_12488	chr7	121187414	121187758	+	0	NA	Intergenic	Intergenic	104148	NM_139310	246190	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding
chipseq_peak_2666	chr12	7431041	7431589	+	0	NA	Intergenic	Intergenic	-50985	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_2180	chr11	22499620	22499991	+	0	NA	Intergenic	L1MEg|LINE|L1	-12478	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding
chipseq_peak_1072	chr1	176223677	176223965	+	0	NA	intron (NM_176916, intron 1 of 9)	intron (NM_176916, intron 1 of 9)	-9879	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding
chipseq_peak_3075	chr12	65534162	65534639	+	0	NA	Intergenic	Intergenic	308883	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding
chipseq_peak_1353	chr10	25523949	25524342	+	0	NA	TTS (NM_001199265)	TTS (NM_001199265)	12127	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding
chipseq_peak_3785	chr13	83076535	83077427	+	0	NA	Intergenic	Intergenic	-378648	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_13228	chr8	118611533	118612068	+	0	NA	intron (NM_019707, intron 2 of 13)	intron (NM_019707, intron 2 of 13)	328189	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding
chipseq_peak_230	chr1	38446258	38446868	+	0	NA	intron (NM_001290814, intron 4 of 21)	intron (NM_001290814, intron 4 of 21)	180681	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding
chipseq_peak_14099	chrX	151674432	151675049	+	0	NA	Intergenic	L1M2|LINE|L1	-128542	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding
chipseq_peak_5673	chr16	42268951	42269654	+	0	NA	intron (NM_008083, intron 2 of 2)	intron (NM_008083, intron 2 of 2)	34167	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
chipseq_peak_3953	chr13	99966714	99967291	+	0	NA	intron (NM_030026, intron 10 of 16)	intron (NM_030026, intron 10 of 16)	48637	NM_030026	78038	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding
chipseq_peak_1369	chr10	26995439	26995821	+	0	NA	intron (NM_008481, intron 57 of 63)	intron (NM_008481, intron 57 of 63)	223118	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
chipseq_peak_4882	chr15	20843418	20843927	+	0	NA	Intergenic	Intergenic	-176922	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_2073	chr10	124419600	124420216	+	0	NA	Intergenic	Intergenic	-49166	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo
chipseq_peak_7566	chr2	39137745	39138532	+	0	NA	intron (NM_178778, intron 2 of 17)	L1M5|LINE|L1	24097	NR_033526	100042584	Mm.451696	NR_033526	ENSMUSG00000082315	Gm16523	A130054J05Rik	mitochondrial ribosomal protein L40 pseudogene	pseudo
chipseq_peak_2747	chr12	26022594	26022936	+	0	NA	Intergenic	Intergenic	187740	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
chipseq_peak_5749	chr16	51041310	51042129	+	0	NA	Intergenic	Intergenic	258310	NR_131005	78639	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA
chipseq_peak_7192	chr19	28381302	28382958	+	0	NA	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-296094	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_13165	chr8	106718138	106718577	+	0	NA	intron (NM_173037, intron 9 of 17)	intron (NM_173037, intron 9 of 17)	35289	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding
chipseq_peak_8408	chr2	171646387	171647028	+	0	NA	Intergenic	B3A|SINE|B2	316092	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA
chipseq_peak_7764	chr2	58270957	58273153	+	0	NA	3' UTR (NM_001111030, exon 9 of 9)	3' UTR (NM_001111030, exon 9 of 9)	-4724	NR_040365	100502932	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	OTTMUSG00000012672	predicted gene 13544	ncRNA
chipseq_peak_4598	chr14	102705932	102706348	+	0	NA	Intergenic	Intergenic	276492	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
chipseq_peak_11957	chr6	139751044	139751538	+	0	NA	intron (NM_207683, intron 6 of 23)	intron (NM_207683, intron 6 of 23)	35432	NM_207683	18705	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	protein-coding
chipseq_peak_13319	chr9	15650585	15650975	+	0	NA	Intergenic	Intergenic	-22847	NM_181816	234964	Mm.32237	NM_181816	ENSMUSG00000039977	Ccdc67	4933401K09Rik|Deup1	coiled-coil domain containing 67	protein-coding
chipseq_peak_8743	chr3	54964092	54966608	+	0	NA	Intergenic	Intergenic	-49463	NM_177854	329641	Mm.51187	NM_177854	ENSMUSG00000056306	Sertm1	6030405A18Rik	serine rich and transmembrane domain containing 1	protein-coding
chipseq_peak_5968	chr16	74055209	74056497	+	0	NA	intron (NM_175549, intron 2 of 27)	intron (NM_175549, intron 2 of 27)	286214	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_10387	chr5	32614376	32615382	+	0	NA	intron (NM_009535, intron 1 of 11)	intron (NM_009535, intron 1 of 11)	3708	NM_001205132	22612	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	protein-coding
chipseq_peak_12806	chr8	45438994	45439622	+	0	NA	Intergenic	Intergenic	-28769	NM_126166	142980	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding
chipseq_peak_3548	chr13	41231280	41231829	+	0	NA	Intergenic	Intergenic	-11151	NM_019423	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding
chipseq_peak_8500	chr3	18940872	18941858	+	0	NA	Intergenic	Intergenic	221700	NM_028840	74252	Mm.200383	NM_028840		Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding
chipseq_peak_4467	chr14	80901329	80902074	+	0	NA	Intergenic	Intergenic	901399	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_13215	chr8	114591212	114591597	+	0	NA	intron (NM_019573, intron 5 of 8)	intron (NM_019573, intron 5 of 8)	151752	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding
chipseq_peak_137	chr1	26256159	26256614	+	0	NA	Intergenic	Intergenic	-426679	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
chipseq_peak_12569	chr7	139666952	139667230	+	0	NA	intron (NM_001302546, intron 9 of 58)	intron (NM_001302546, intron 9 of 58)	16724	NM_001302546	212124	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding
chipseq_peak_7615	chr2	44013174	44014069	+	0	NA	intron (NM_001301832, intron 7 of 14)	intron (NM_001301832, intron 7 of 14)	51703	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_7429	chr2	8325375	8325841	+	0	NA	Intergenic	Intergenic	-863907	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_11939	chr6	137699007	137699942	+	0	NA	Intergenic	Intergenic	-35608	NM_011499	20901	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding
chipseq_peak_3388	chr13	5727996	5729367	+	0	NA	Intergenic	PB1D9|SINE|Alu	129411	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
chipseq_peak_6173	chr17	8986418	8986901	+	0	NA	TTS (NM_001290707)	TTS (NM_001290707)	-1674	NM_025851	66931	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding
chipseq_peak_7745	chr2	57138640	57139474	+	0	NA	intron (NR_040356, intron 1 of 2)	(TTA)n|Simple_repeat|Simple_repeat	-15054	NM_001139509	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding
chipseq_peak_1440	chr10	32925119	32925578	+	0	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-35433	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
chipseq_peak_2310	chr11	41931026	41931732	+	0	NA	intron (NM_177408, intron 6 of 8)	intron (NM_177408, intron 6 of 8)	69335	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding
chipseq_peak_11171	chr6	12145143	12145645	+	0	NA	Intergenic	Intergenic	-35814	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo
chipseq_peak_11503	chr6	53421107	53421389	+	0	NA	Intergenic	Intergenic	133953	NR_015553	320189	Mm.227444	NR_015553		9430076C15Rik	-	RIKEN cDNA 9430076C15 gene	ncRNA
chipseq_peak_11578	chr6	66942417	66943031	+	0	NA	intron (NM_001177557, intron 2 of 3)	intron (NM_001177557, intron 2 of 3)	45833	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
chipseq_peak_2901	chr12	42961560	42962173	+	0	NA	Intergenic	Intergenic	1248202	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
chipseq_peak_220	chr1	36813395	36814370	+	0	NA	intron (NM_018872, intron 25 of 40)	intron (NM_018872, intron 25 of 40)	34898	NM_001289612	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding
chipseq_peak_155	chr1	29691347	29692662	+	0	NA	Intergenic	Intergenic	270516	NR_105760	102465174		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA
chipseq_peak_13966	chrX	12791636	12792362	+	0	NA	intron (NR_045852, intron 2 of 4)	LTR16B|LTR|ERVL	29721	NR_045852	552913	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	OTTMUSG00000017535	predicted gene 14634	ncRNA
chipseq_peak_5580	chr16	29204421	29205325	+	0	NA	Intergenic	Intergenic	-4822	NM_013751	27281	Mm.103650	NM_013751	ENSMUSG00000022525	Hrasls	2810012B06Rik|A-C1|HRSL1|Hrasrs	HRAS-like suppressor	protein-coding
chipseq_peak_4375	chr14	66476564	66477637	+	0	NA	Intergenic	Intergenic	132804	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding
chipseq_peak_9070	chr3	108324853	108325286	+	0	NA	intron (NM_019972, intron 4 of 19)	MTE2a|LTR|ERVL-MaLR	-39842	NM_026831	68753	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding
chipseq_peak_7076	chr19	12096922	12097292	+	0	NA	intron (NR_030566, intron 2 of 3)	intron (NR_030566, intron 2 of 3)	2530	NM_146679	258674	Mm.377633	NM_146679	ENSMUSG00000067525	Olfr1427	MOR239-4	olfactory receptor 1427	protein-coding
chipseq_peak_13343	chr9	22754107	22754474	+	0	NA	intron (NM_181316, intron 18 of 21)	intron (NM_181316, intron 18 of 21)	278575	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding
chipseq_peak_1424	chr10	31051203	31051603	+	0	NA	Intergenic	Intergenic	-208620	NM_013904	15214	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding
chipseq_peak_295	chr1	44589521	44589876	+	0	NA	intron (NM_028450, intron 1 of 10)	intron (NM_028450, intron 1 of 10)	38027	NM_028450	70676	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding
chipseq_peak_4381	chr14	67620876	67621495	+	0	NA	Intergenic	Intergenic	94425	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding
chipseq_peak_13626	chr9	61227657	61228305	+	0	NA	Intergenic	Intergenic	65828	NR_045334	622037	Mm.126243	NR_045334		B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA
chipseq_peak_9364	chr3	149909773	149910828	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	635563	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_4785	chr15	9713636	9714085	+	0	NA	intron (NM_177123, intron 7 of 17)	intron (NM_177123, intron 7 of 17)	35008	NM_001305044	320277	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding
chipseq_peak_5808	chr16	58068618	58069039	+	0	NA	Intergenic	Intergenic	-314091	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding
chipseq_peak_6240	chr17	35917920	35919068	+	0	NA	TTS (NR_035445)	TTS (NR_035445)	605	NR_035445	100316810		NR_035445	ENSMUSG00000084751	Mir1894	Mirn1894|mmu-mir-1894	microRNA 1894	ncRNA
chipseq_peak_11479	chr6	49977228	49978741	+	0	NA	Intergenic	Intergenic	-132257	NM_001164734	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding
chipseq_peak_2250	chr11	36337122	36337471	+	0	NA	intron (NM_011856, intron 3 of 28)	intron (NM_011856, intron 3 of 28)	-357207	NM_170779	211652	Mm.31267	NM_170779		Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding
chipseq_peak_9327	chr3	144478195	144478681	+	0	NA	intron (NM_011828, intron 1 of 6)	intron (NM_011828, intron 1 of 6)	91778	NM_011828	23908	Mm.12863	NM_011828		Hs2st1	AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding
chipseq_peak_1510	chr10	43630408	43632783	+	0	NA	TTS (NR_033558)	TTS (NR_033558)	38168	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA
chipseq_peak_3732	chr13	78200485	78202388	+	0	NA	intron (NR_045195, intron 1 of 2)	GA-rich|Low_complexity|Low_complexity	-2454	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding
chipseq_peak_11254	chr6	18684826	18685119	+	0	NA	Intergenic	Intergenic	-163663	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
chipseq_peak_13257	chr8	127423128	127424839	+	0	NA	intron (NM_001309391, intron 19 of 24)	intron (NM_001309391, intron 19 of 24)	124331	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_5217	chr15	63360542	63361033	+	0	NA	Intergenic	Intergenic	118821	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA
chipseq_peak_12311	chr7	90697312	90697531	+	0	NA	Intergenic	Intergenic	-221426	NM_026734	68472	Mm.289791	NM_026734		Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding
chipseq_peak_4604	chr14	103865053	103865677	+	0	NA	Intergenic	Intergenic	-20889	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding
chipseq_peak_602	chr1	89848399	89850136	+	0	NA	intron (NM_178119, intron 16 of 17)	intron (NM_178119, intron 16 of 17)	81909	NM_010262	14472	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding
chipseq_peak_7066	chr19	5529970	5530518	+	0	NA	Intergenic	Intergenic	-19755	NM_001024560	225861	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding
chipseq_peak_6838	chr18	54055680	54056036	+	0	NA	Intergenic	Intergenic	193745	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
chipseq_peak_13412	chr9	29625508	29625902	+	0	NA	intron (NM_172290, intron 1 of 7)	L1M2|LINE|L1	337424	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_13848	chr9	105524220	105524568	+	0	NA	Intergenic	Intergenic	-3137	NM_001253831	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding
chipseq_peak_9328	chr3	144559095	144559367	+	0	NA	intron (NM_011828, intron 1 of 6)	L1MEc|LINE|L1	10985	NM_011828	23908	Mm.12863	NM_011828		Hs2st1	AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding
chipseq_peak_11772	chr6	103682781	103683472	+	0	NA	intron (NM_007697, intron 9 of 26)	intron (NM_007697, intron 9 of 26)	172250	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_10937	chr5	116278309	116279019	+	0	NA	intron (NM_177759, intron 1 of 13)	intron (NM_177759, intron 1 of 13)	10321	NM_177759	269693	Mm.10946	NM_177759		Ccdc60	AU018954|C130098D09	coiled-coil domain containing 60	protein-coding
chipseq_peak_1381	chr10	27176800	27177634	+	0	NA	intron (NM_008481, intron 28 of 63)	intron (NM_008481, intron 28 of 63)	-212649	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_5049	chr15	44331392	44332799	+	0	NA	Intergenic	Intergenic	-96016	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding
chipseq_peak_10000	chr4	85768126	85768591	+	0	NA	Intergenic	Intergenic	-285557	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding
chipseq_peak_2029	chr10	118648144	118648505	+	0	NA	Intergenic	Intergenic	-91799	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA
chipseq_peak_8635	chr3	41124951	41125591	+	0	NA	Intergenic	Intergenic	-42225	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding
chipseq_peak_1516	chr10	45888966	45889954	+	0	NA	Intergenic	Intergenic	81756	NR_040624	320363	Mm.123343	NR_040624		D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA
chipseq_peak_3240	chr12	85436083	85437302	+	0	NA	Intergenic	Intergenic	-37209	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding
chipseq_peak_8612	chr3	38882943	38885805	+	0	NA	Intergenic	Intergenic	-2566	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT tumor suppressor homolog 4 (Drosophila)	protein-coding
chipseq_peak_11510	chr6	54391689	54392414	+	0	NA	intron (NR_033635, intron 3 of 13)	(TAGA)n|Simple_repeat|Simple_repeat	38170	NR_033635	100042056	Mm.448157	NM_198118	ENSMUSG00000073067	9130019P16Rik	6430501H15Rik|OTTMUSG00000023151	RIKEN cDNA 9130019P16 gene	ncRNA
chipseq_peak_7785	chr2	60914784	60915303	+	0	NA	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-33605	NM_001141931	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
chipseq_peak_8359	chr2	161615059	161615924	+	0	NA	intron (NM_001291150, intron 16 of 30)	intron (NM_001291150, intron 16 of 30)	-506405	NM_173368	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
chipseq_peak_2693	chr12	12321074	12321438	+	0	NA	intron (NM_029758, intron 3 of 12)	intron (NM_029758, intron 3 of 12)	59117	NM_001146119	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding
chipseq_peak_8392	chr2	170618948	170619431	+	0	NA	Intergenic	Intergenic	-17172	NR_027825	67637	Mm.158163	NM_026287	ENSMUSG00000043583	4930470P17Rik	-	RIKEN cDNA 4930470P17 gene	ncRNA
chipseq_peak_3874	chr13	91128448	91129564	+	0	NA	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	94981	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding
chipseq_peak_3357	chr12	117501311	117501725	+	0	NA	Intergenic	Intergenic	-14961	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chipseq_peak_10379	chr5	30774837	30775437	+	0	NA	intron (NM_023047, intron 2 of 12)	intron (NM_023047, intron 2 of 12)	-39504	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding
chipseq_peak_5474	chr16	6006769	6007246	+	0	NA	intron (NM_021477, intron 1 of 16)	BC1_Mm|scRNA|scRNA	31420	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA
chipseq_peak_6205	chr17	16577343	16577804	+	0	NA	Intergenic	Intergenic	-486530	NM_001163919	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding
chipseq_peak_7355	chr2	4034201	4035023	+	0	NA	Intergenic	Intergenic	106529	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA
chipseq_peak_8808	chr3	65359932	65360563	+	0	NA	intron (NM_001289450, intron 12 of 14)	MIRc|SINE|MIR	-10818	NR_040390	319798	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA
chipseq_peak_4225	chr14	29435221	29435690	+	0	NA	intron (NM_009785, intron 4 of 37)	intron (NM_009785, intron 4 of 37)	286409	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding
chipseq_peak_9863	chr4	69346656	69347624	+	0	NA	Intergenic	L2c|LINE|L2	-392743	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding
chipseq_peak_4623	chr14	106050186	106050703	+	0	NA	Intergenic	Intergenic	-55754	NM_198601	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding
chipseq_peak_13866	chr9	107009889	107010926	+	0	NA	intron (NM_153413, intron 12 of 52)	intron (NM_153413, intron 12 of 52)	-118469	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding
chipseq_peak_3889	chr13	92751200	92752167	+	0	NA	TTS (NM_011582)	TTS (NM_011582)	43135	NM_011582	21828	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding
chipseq_peak_13580	chr9	54970327	54970796	+	0	NA	Intergenic	Intergenic	-10319	NM_176844	110835	Mm.103778	NM_176844	ENSMUSG00000035594	Chrna5	Acra-5|Acra5	cholinergic receptor, nicotinic, alpha polypeptide 5	protein-coding
chipseq_peak_8502	chr3	19405835	19406756	+	0	NA	Intergenic	MamRep1151|LTR?|LTR?	-94973	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding
chipseq_peak_7078	chr19	12133418	12134874	+	0	NA	intron (NR_030566, intron 2 of 3)	L1ME3Cz|LINE|L1	-13472	NM_146682	258677	Mm.261576	NM_146682	ENSMUSG00000067522	Olfr76	MOR215-3|V5	olfactory receptor 76	protein-coding
chipseq_peak_6176	chr17	9169402	9169814	+	0	NA	Intergenic	Intergenic	-1586	NR_027881	67791	Mm.158175	NR_027881	ENSMUSG00000097049	6530411M01Rik	-	RIKEN cDNA 6530411M01 gene	ncRNA
chipseq_peak_3816	chr13	83986891	83988386	+	0	NA	Intergenic	Intergenic	77136	NR_131220	553095	Mm.39702	NR_131220		Gm17750	-	predicted gene, 17750	ncRNA
chipseq_peak_4652	chr14	110114887	110116017	+	0	NA	Intergenic	Intergenic	639697	NM_175499	239250	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding
chipseq_peak_7372	chr2	5808488	5809162	+	0	NA	intron (NM_133837, intron 7 of 12)	intron (NM_133837, intron 7 of 12)	36135	NM_133837	98828	Mm.181490	NM_133837	ENSMUSG00000039128	Cdc123	AA959893|G431001I09Rik	cell division cycle 123	protein-coding
chipseq_peak_12084	chr7	49190440	49191862	+	0	NA	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-55038	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
chipseq_peak_2780	chr12	28202739	28203388	+	0	NA	Intergenic	Intergenic	345274	NM_001177964	68511	Mm.310284	NM_001177964	ENSMUSG00000020633	Dcdc2c	1110015M06Rik	doublecortin domain containing 2C	protein-coding
chipseq_peak_1254	chr10	9602351	9602886	+	0	NA	Intergenic	Intergenic	72590	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
chipseq_peak_11387	chr6	37072376	37072942	+	0	NA	intron (NM_001081206, intron 6 of 33)	intron (NM_001081206, intron 6 of 33)	227317	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding
chipseq_peak_2522	chr11	99644281	99644743	+	0	NA	promoter-TSS (NM_029613)	promoter-TSS (NM_029613)	-423	NM_029613	76444	Mm.348022	NM_029613	ENSMUSG00000045109	Krtap4-7	2310037K05Rik|KAP4.7|KRTAP4.7	keratin associated protein 4-7	protein-coding
chipseq_peak_664	chr1	101524199	101524994	+	0	NA	Intergenic	Intergenic	368828	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
chipseq_peak_12652	chr8	16051547	16051890	+	0	NA	intron (NM_053171, intron 37 of 69)	intron (NM_053171, intron 37 of 69)	117120	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_9771	chr4	47707918	47708571	+	0	NA	Intergenic	Intergenic	233583	NM_024171	66212	Mm.20188	NM_024171	ENSMUSG00000053317	Sec61b	1190006C12Rik|AI326121|AW122942	Sec61 beta subunit	protein-coding
chipseq_peak_12320	chr7	91126149	91127152	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	35864	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_11245	chr6	18465962	18466515	+	0	NA	intron (NM_080285, intron 2 of 22)	intron (NM_080285, intron 2 of 22)	48587	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_7897	chr2	74272704	74273804	+	0	NA	Intergenic	Intergenic	34463	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA
chipseq_peak_13191	chr8	112045813	112046387	+	0	NA	Intergenic	Intergenic	34741	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding
chipseq_peak_9916	chr4	76379855	76381104	+	0	NA	intron (NM_011211, intron 10 of 39)	intron (NM_011211, intron 10 of 39)	-1102193	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_5173	chr15	58554819	58555443	+	0	NA	Intergenic	Intergenic	139663	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	D15Ertd621e	AV220772|BC033609|Fam91a1|SKIN|mKIAA0493	DNA segment, Chr 15, ERATO Doi 621, expressed	protein-coding
chipseq_peak_9484	chr4	7894949	7895940	+	0	NA	Intergenic	Intergenic	334756	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA
chipseq_peak_8363	chr2	162080836	162081551	+	0	NA	intron (NM_001291150, intron 7 of 30)	intron (NM_001291150, intron 7 of 30)	-309620	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA
chipseq_peak_11555	chr6	61976593	61977235	+	0	NA	intron (NM_001164316, intron 10 of 10)	intron (NM_001164316, intron 10 of 10)	-796104	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
chipseq_peak_13716	chr9	83316041	83317859	+	0	NA	Intergenic	Intergenic	-114597	NR_102437	100039186	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA
chipseq_peak_2562	chr11	107995238	107995741	+	0	NA	intron (NM_011101, intron 8 of 16)	intron (NM_011101, intron 8 of 16)	-1359	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA
chipseq_peak_3114	chr12	69971820	69972326	+	0	NA	intron (NM_022028, intron 3 of 4)	intron (NM_022028, intron 3 of 4)	8664	NR_036607	100040999	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo
chipseq_peak_5047	chr15	43917547	43918470	+	0	NA	Intergenic	Intergenic	-47979	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
chipseq_peak_9938	chr4	78182202	78182465	+	0	NA	intron (NM_011211, intron 1 of 39)	intron (NM_011211, intron 1 of 39)	29562	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_4824	chr15	14226361	14226980	+	0	NA	Intergenic	Intergenic	-1052995	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_3039	chr12	60066362	60066727	+	0	NA	Intergenic	RMER6A|LTR|ERVK	-847061	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_6410	chr17	71131511	71131885	+	0	NA	Intergenic	Intergenic	-52280	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding
chipseq_peak_1310	chr10	17721882	17722549	+	0	NA	Intergenic	Intergenic	-1013	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding
chipseq_peak_10195	chr4	134405319	134405573	+	0	NA	intron (NM_001285872, intron 4 of 10)	RCHARR1|DNA|hAT-Charlie	2476	NM_001285877	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding
chipseq_peak_2411	chr11	70227046	70227510	+	0	NA	intron (NM_007528, intron 5 of 8)	intron (NM_007528, intron 5 of 8)	2520	NM_007528	12029	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding
chipseq_peak_4492	chr14	86506295	86507226	+	0	NA	Intergenic	Intergenic	260790	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
chipseq_peak_9821	chr4	55088223	55088676	+	0	NA	Intergenic	Intergenic	140504	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding
chipseq_peak_2249	chr11	36252065	36252409	+	0	NA	intron (NM_011856, intron 5 of 28)	intron (NM_011856, intron 5 of 28)	-272148	NM_170779	211652	Mm.31267	NM_170779		Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding
chipseq_peak_7431	chr2	8344420	8345172	+	0	NA	Intergenic	Intergenic	-844719	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_11327	chr6	32065993	32066381	+	0	NA	Intergenic	Intergenic	15899	NM_029587	76382	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding
chipseq_peak_13579	chr9	54840978	54841243	+	0	NA	Intergenic	Intergenic	-22645	NM_022655	64602	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding
chipseq_peak_1890	chr10	101808816	101809096	+	0	NA	intron (NM_001205098, intron 1 of 7)	intron (NM_001205098, intron 1 of 7)	36264	NR_037211	100526516		NR_037211	ENSMUSG00000092952	Mir3059	mir-3059|mmu-mir-3059	microRNA 3059	ncRNA
chipseq_peak_10800	chr5	91842919	91843491	+	0	NA	Intergenic	Intergenic	-75905	NR_045383	73452	Mm.396233	NR_045383	ENSMUSG00000101978	1700063O14Rik	-	RIKEN cDNA 1700063O14 gene	ncRNA
chipseq_peak_2352	chr11	52522125	52522782	+	0	NA	Intergenic	Intergenic	126025	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding
chipseq_peak_2500	chr11	90360456	90360820	+	0	NA	intron (NM_172563, intron 2 of 3)	intron (NM_172563, intron 2 of 3)	30279	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding
chipseq_peak_6932	chr18	66520250	66520803	+	0	NA	Intergenic	Intergenic	16348	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA
chipseq_peak_10147	chr4	119901658	119902444	+	0	NA	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	87373	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chipseq_peak_8965	chr3	82134986	82136344	+	0	NA	intron (NM_021896, intron 1 of 8)	intron (NM_021896, intron 1 of 8)	10212	NM_021896	60596	Mm.143831	NM_021896	ENSMUSG00000033910	Gucy1a3	1200016O07Rik|sGC-alpha1	guanylate cyclase 1, soluble, alpha 3	protein-coding
chipseq_peak_5751	chr16	51532582	51532896	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-498810	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
chipseq_peak_6607	chr18	17976484	17977093	+	0	NA	Intergenic	Intergenic	-395798	NR_045374	75162	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA
chipseq_peak_6682	chr18	26729016	26729673	+	0	NA	Intergenic	Intergenic	-975361	NM_001146294	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
chipseq_peak_11689	chr6	97589607	97590317	+	0	NA	intron (NM_145148, intron 1 of 23)	intron (NM_145148, intron 1 of 23)	27695	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013	FERM domain containing 4B	protein-coding
chipseq_peak_7061	chr18	89728384	89729903	+	0	NA	intron (NM_001039173, intron 1 of 7)	intron (NM_001039173, intron 1 of 7)	39993	NM_001039173	623279	Mm.447164	NM_001039173		Dok6	Dok-6	docking protein 6	protein-coding
chipseq_peak_5836	chr16	63224561	63224794	+	0	NA	Intergenic	Intergenic	370370	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
chipseq_peak_8478	chr3	17619766	17620996	+	0	NA	Intergenic	Intergenic	-169540	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	2610100L16Rik	100040120|Gm2612	RIKEN cDNA 2610100L16 gene	ncRNA
chipseq_peak_3370	chr12	119823580	119824131	+	0	NA	Intergenic	Intergenic	-122107	NM_001160385	217951	Mm.387395	NM_001160385		Tmem196	Gm528	transmembrane protein 196	protein-coding
chipseq_peak_13571	chr9	52841085	52841614	+	0	NA	Intergenic	Intergenic	161486	NR_045333	382139	Mm.335162	NR_045333		Gm1715	-	predicted gene 1715	ncRNA
chipseq_peak_8207	chr2	135619993	135620536	+	0	NA	Intergenic	Intergenic	-37044	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA
chipseq_peak_2600	chr11	111532240	111532917	+	0	NA	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	466414	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
chipseq_peak_9874	chr4	70742835	70743834	+	0	NA	Intergenic	Intergenic	-208406	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
chipseq_peak_6923	chr18	66078038	66078605	+	0	NA	intron (NM_178793, intron 5 of 10)	intron (NM_178793, intron 5 of 10)	-75686	NM_027400	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding
chipseq_peak_9705	chr4	33266626	33267058	+	0	NA	Intergenic	Intergenic	-18055	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding
chipseq_peak_3986	chr13	104560347	104561174	+	0	NA	Intergenic	Intergenic	256193	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
chipseq_peak_3804	chr13	83568327	83573064	+	0	NA	intron (NM_001170537, intron 2 of 10)	intron (NM_001170537, intron 2 of 10)	66661	NM_001170537	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_4931	chr15	27049682	27050210	+	0	NA	Intergenic	Intergenic	-154382	NM_176959	448987	Mm.253378	NM_176959		Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding
chipseq_peak_12326	chr7	91247291	91248412	+	0	NA	intron (NM_011807, intron 1 of 22)	MIRb|SINE|MIR	157065	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_12406	chr7	98418420	98418874	+	0	NA	Intergenic	Intergenic	-21769	NM_001130693	14918	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding
chipseq_peak_13548	chr9	51394195	51394877	+	0	NA	Intergenic	Mam_R4|LINE|Dong-R4	-65619	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding
chipseq_peak_5975	chr16	74281632	74283156	+	0	NA	intron (NM_175549, intron 2 of 27)	intron (NM_175549, intron 2 of 27)	59673	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_11416	chr6	41560188	41560679	+	0	NA	Intergenic	Intergenic	38657	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding
chipseq_peak_5942	chr16	72899704	72900124	+	0	NA	intron (NM_019413, intron 2 of 28)	intron (NM_019413, intron 2 of 28)	236765	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_3558	chr13	42744503	42745111	+	0	NA	intron (NM_001302635, intron 3 of 13)	intron (NM_001302635, intron 3 of 13)	35226	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_13079	chr8	91170932	91171315	+	0	NA	Intergenic	Intergenic	-35629	NM_010241	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding
chipseq_peak_3291	chr12	95675680	95675984	+	0	NA	Intergenic	Intergenic	-16394	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chipseq_peak_1617	chr10	63803821	63805168	+	0	NA	intron (NM_001164376, intron 5 of 17)	intron (NM_001164376, intron 5 of 17)	-16561	NM_001164519	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding
chipseq_peak_4982	chr15	34647650	34649110	+	0	NA	intron (NM_145469, intron 3 of 10)	B1_Mur4|SINE|Alu	-26693	NR_045883	71637	Mm.410827	NR_045883		4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA
chipseq_peak_8953	chr3	81782124	81783664	+	0	NA	Intergenic	LTR41B|LTR|ERVL	-149722	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
chipseq_peak_10443	chr5	44351970	44352801	+	0	NA	Intergenic	Intergenic	-125779	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding
chipseq_peak_4290	chr14	48942583	48943284	+	0	NA	Intergenic	Intergenic	64060	NR_033783	66770	Mm.136954	NR_033783		4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA
chipseq_peak_8358	chr2	161470598	161471308	+	0	NA	Intergenic	MIR|SINE|MIR	-361867	NM_173368	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
chipseq_peak_7217	chr19	31232519	31232788	+	0	NA	intron (NM_011160, intron 3 of 17)	intron (NM_011160, intron 3 of 17)	-16257	NR_002849	78103	Mm.445198	NR_002849		8430431K14Rik	-	RIKEN cDNA 8430431K14 gene	ncRNA
chipseq_peak_3831	chr13	84760093	84762885	+	0	NA	Intergenic	Intergenic	-427988	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
chipseq_peak_10082	chr4	102310318	102311029	+	0	NA	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	55734	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding
chipseq_peak_10356	chr5	21608599	21611024	+	0	NA	intron (NM_177076, intron 7 of 19)	B1_Mur1|SINE|Alu	35794	NM_177076	320118	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding
chipseq_peak_13673	chr9	72165719	72166262	+	0	NA	Intergenic	L1ME4c|LINE|L1	-54171	NM_001253865	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding
chipseq_peak_8035	chr2	102146134	102146594	+	0	NA	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	40096	NM_001290784	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding
chipseq_peak_6564	chr18	7124464	7126057	+	0	NA	intron (NM_001081393, intron 20 of 20)	intron (NM_001081393, intron 20 of 20)	-120481	NM_177595	210719	Mm.257186	NM_177595	ENSMUSG00000061013	Mkx	9430023B20Rik|Irxl1	mohawk homeobox	protein-coding
chipseq_peak_13672	chr9	72021586	72021889	+	0	NA	intron (NM_011544, intron 3 of 20)	L1MEf|LINE|L1	58296	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA
chipseq_peak_6319	chr17	55367419	55367921	+	0	NA	Intergenic	Intergenic	-78047	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding
chipseq_peak_5621	chr16	37958843	37959540	+	0	NA	intron (NM_153394, intron 3 of 9)	intron (NM_153394, intron 3 of 9)	42695	NM_153394	239845	Mm.228018	NM_153394	ENSMUSG00000046961	Gpr156	Gababl	G protein-coupled receptor 156	protein-coding
chipseq_peak_10307	chr5	15881502	15882432	+	0	NA	intron (NR_045974, intron 1 of 5)	L1MC4|LINE|L1	1799	NR_045974	75058	Mm.183467	NR_045974	ENSMUSG00000105185	4930519H02Rik	-	RIKEN cDNA 4930519H02 gene	ncRNA
chipseq_peak_4372	chr14	66229058	66230799	+	0	NA	intron (NM_172498, intron 1 of 29)	intron (NM_172498, intron 1 of 29)	-16376	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding
chipseq_peak_13187	chr8	111218068	111218589	+	0	NA	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	40874	NM_009149	20340	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding
chipseq_peak_3372	chr12	119889988	119890836	+	0	NA	Intergenic	Intergenic	-55550	NM_001160385	217951	Mm.387395	NM_001160385		Tmem196	Gm528	transmembrane protein 196	protein-coding
chipseq_peak_7181	chr19	27429993	27430283	+	0	NA	promoter-TSS (NR_131940)	promoter-TSS (NR_131940)	101	NR_027987	107372	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA
chipseq_peak_13974	chrX	23422211	23422633	+	0	NA	Intergenic	Intergenic	-57340	NM_026167	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding
chipseq_peak_11232	chr6	17164322	17164670	+	0	NA	Intergenic	Intergenic	-33255	NR_102305	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA
chipseq_peak_3384	chr13	5519386	5519961	+	0	NA	Intergenic	Intergenic	338419	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
chipseq_peak_2024	chr10	117110519	117110824	+	0	NA	intron (NM_177798, intron 1 of 9)	(TTAA)n|Simple_repeat|Simple_repeat	37803	NM_177798	327826	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding
chipseq_peak_5790	chr16	55418592	55419179	+	0	NA	Intergenic	Intergenic	-75846	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA
chipseq_peak_1065	chr1	175243591	175243909	+	0	NA	intron (NM_001199003, intron 3 of 17)	intron (NM_001199003, intron 3 of 17)	248795	NM_011880	24012	Mm.7956	NM_011880	ENSMUSG00000026527	Rgs7	-	regulator of G protein signaling 7	protein-coding
chipseq_peak_663	chr1	101122439	101122941	+	0	NA	Intergenic	Intergenic	-33078	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
chipseq_peak_1426	chr10	31465818	31466213	+	0	NA	Intergenic	Intergenic	-20094	NM_009413	21987	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding
chipseq_peak_13173	chr8	107980703	107981100	+	0	NA	Intergenic	Intergenic	-392419	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding
chipseq_peak_309	chr1	47339568	47340972	+	0	NA	Intergenic	Intergenic	126855	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_10364	chr5	23711626	23712009	+	0	NA	intron (NR_015554, intron 1 of 4)	B2_Mm2|SINE|B2	850	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA
chipseq_peak_2079	chr10	124970209	124970809	+	0	NA	Intergenic	HERVL74-int|LTR|ERVL	358026	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
chipseq_peak_9365	chr3	149918656	149919214	+	0	NA	Intergenic	Intergenic	644198	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_8203	chr2	135079999	135080977	+	0	NA	intron (NM_019677, intron 3 of 32)	intron (NM_019677, intron 3 of 32)	135128	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA
chipseq_peak_6786	chr18	43842034	43842565	+	0	NA	Intergenic	Intergenic	-49421	NM_001033280	225443	Mm.100304	NM_001033280	ENSMUSG00000071858	Gm94	-	predicted gene 94	protein-coding
chipseq_peak_8769	chr3	56702096	56702580	+	0	NA	Intergenic	Intergenic	-518637	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_2164	chr11	18318826	18319122	+	0	NA	Intergenic	Intergenic	222988	NR_131129	327872		NR_131129		Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA
chipseq_peak_6489	chr17	86320110	86320614	+	0	NA	intron (NM_011104, intron 1 of 14)	Lx8b|LINE|L1	-33184	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA
chipseq_peak_4211	chr14	27779002	27779321	+	0	NA	intron (NM_177814, intron 3 of 15)	intron (NM_177814, intron 3 of 15)	156719	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding
chipseq_peak_2303	chr11	41258530	41258904	+	0	NA	Intergenic	Intergenic	-503431	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding
chipseq_peak_13597	chr9	59096524	59097571	+	0	NA	Intergenic	Intergenic	-60606	NM_001042752	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding
chipseq_peak_4280	chr14	47197302	47197889	+	0	NA	Intergenic	Intergenic	-8193	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding
chipseq_peak_8714	chr3	53584371	53584890	+	0	NA	intron (NM_172862, intron 4 of 23)	intron (NM_172862, intron 4 of 23)	72725	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding
chipseq_peak_13606	chr9	59202326	59203329	+	0	NA	Intergenic	Tigger19a|DNA|TcMar-Tigger	-88745	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding
chipseq_peak_12532	chr7	131386095	131387056	+	0	NA	intron (NM_001039534, intron 5 of 5)	L1MB8|LINE|L1	15429	NM_001039534	214580	Mm.272948	NM_177609	ENSMUSG00000063179	Pstk	5430423O14Rik|5730458D16Rik|Gm1099|R75284	phosphoseryl-tRNA kinase	protein-coding
chipseq_peak_9277	chr3	139020154	139021372	+	0	NA	intron (NM_145544, intron 3 of 13)	intron (NM_145544, intron 3 of 13)	54438	NM_001286759	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding
chipseq_peak_4260	chr14	37795677	37796116	+	0	NA	Intergenic	Intergenic	-660574	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
chipseq_peak_5243	chr15	66314089	66314788	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-28214	NM_152923	110862	Mm.255585	NM_152923		Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding
chipseq_peak_13346	chr9	23548875	23549294	+	0	NA	Intergenic	Intergenic	326008	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding
chipseq_peak_430	chr1	60898278	60898614	+	0	NA	Intergenic	Intergenic	-10579	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding
chipseq_peak_9103	chr3	116100706	116101529	+	0	NA	Intergenic	Intergenic	28571	NM_011693	22329	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding
chipseq_peak_714	chr1	111984502	111984947	+	0	NA	Intergenic	Intergenic	-119806	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
chipseq_peak_12101	chr7	51036241	51036825	+	0	NA	Intergenic	Intergenic	437343	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding
chipseq_peak_6698	chr18	29989757	29990041	+	0	NA	Intergenic	Intergenic	-282997	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_8683	chr3	49983674	49984126	+	0	NA	Intergenic	Intergenic	-226584	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding
chipseq_peak_679	chr1	104912069	104912960	+	0	NA	intron (NM_011800, intron 1 of 11)	intron (NM_011800, intron 1 of 11)	143695	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_5079	chr15	46111279	46112273	+	0	NA	Intergenic	Intergenic	-212809	NR_045509	71120	Mm.158571	NR_045509	ENSMUSG00000099751	1700022A22Rik	4933413D07Rik	RIKEN cDNA 1700022A22 gene	ncRNA
chipseq_peak_3293	chr12	96167350	96168166	+	0	NA	Intergenic	Intergenic	-120536	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo
chipseq_peak_5615	chr16	37546411	37547182	+	0	NA	intron (NM_001042499, intron 2 of 7)	L1M5|LINE|L1	6902	NM_001042499	67657	Mm.28158	NM_026297	ENSMUSG00000022827	Rabl3	4930553C05Rik|AA958834	RAB, member RAS oncogene family-like 3	protein-coding
chipseq_peak_8771	chr3	56787527	56789972	+	0	NA	Intergenic	Intergenic	513170	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding
chipseq_peak_1114	chr1	177444273	177444712	+	0	NA	promoter-TSS (NM_001012330)	promoter-TSS (NM_001012330)	-169	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_2886	chr12	40842331	40843954	+	0	NA	intron (NM_172803, intron 52 of 52)	B4|SINE|B4	-180948	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
chipseq_peak_2641	chr12	6045990	6048166	+	0	NA	Intergenic	Intergenic	670576	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA
chipseq_peak_297	chr1	45215944	45216756	+	0	NA	Intergenic	Intergenic	-95188	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|MMS10-W|Ms10w|mKIAA4231	collagen, type III, alpha 1	protein-coding
chipseq_peak_10312	chr5	16094945	16095662	+	0	NA	intron (NM_009784, intron 3 of 37)	intron (NM_009784, intron 3 of 37)	160612	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_1019	chr1	167780182	167780599	+	0	NA	intron (NM_033652, intron 2 of 7)	intron (NM_033652, intron 2 of 7)	90832	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding
chipseq_peak_6103	chr16	90040929	90041415	+	0	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	-66473	NM_001145886	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding
chipseq_peak_13070	chr8	90239883	90240442	+	0	NA	Intergenic	Intergenic	108090	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
chipseq_peak_12388	chr7	96511976	96512316	+	0	NA	intron (NM_001310762, intron 4 of 32)	Eulor9A|DNA|DNA	-170182	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA
chipseq_peak_5211	chr15	62901714	62902294	+	0	NA	Intergenic	L1MA6|LINE|L1	577604	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA
chipseq_peak_9319	chr3	143508461	143509073	+	0	NA	Intergenic	Intergenic	203376	NR_040405	621809	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA
chipseq_peak_1096	chr1	177068828	177069712	+	0	NA	intron (NM_011785, intron 7 of 12)	intron (NM_011785, intron 7 of 12)	179497	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_6573	chr18	10257622	10258973	+	0	NA	Intergenic	HAL1|LINE|L1	-66882	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding
chipseq_peak_7142	chr19	22779998	22780956	+	0	NA	intron (NM_001035239, intron 7 of 24)	intron (NM_001035239, intron 7 of 24)	29872	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA
chipseq_peak_7056	chr18	89461955	89463225	+	0	NA	intron (NM_001039173, intron 5 of 7)	intron (NM_001039173, intron 5 of 7)	265163	NM_178687	225825	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding
chipseq_peak_4840	chr15	17323376	17324031	+	0	NA	Intergenic	Intergenic	545602	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_7004	chr18	72931677	72932645	+	0	NA	Intergenic	Intergenic	-581092	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
chipseq_peak_4284	chr14	48224161	48224933	+	0	NA	intron (NR_003630, intron 2 of 2)	intron (NR_003630, intron 2 of 2)	25831	NR_003630	624367	Mm.445185	NM_001037921	ENSMUSG00000063885	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_7235	chr19	36921867	36922291	+	0	NA	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-2480	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding
chipseq_peak_5285	chr15	69389134	69390204	+	0	NA	Intergenic	Intergenic	119136	NR_130983	75076		NR_130983		4930504C09Rik	-	RIKEN cDNA 4930504C09 gene	ncRNA
chipseq_peak_2325	chr11	42806850	42807408	+	0	NA	Intergenic	Intergenic	-342748	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding
chipseq_peak_7625	chr2	44302317	44305381	+	0	NA	intron (NM_001301832, intron 13 of 14)	intron (NM_001301832, intron 13 of 14)	-238525	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_2406	chr11	69041096	69042508	+	0	NA	Intergenic	Intergenic	-3835	NM_011496	20877	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding
chipseq_peak_11399	chr6	38857647	38858092	+	0	NA	intron (NM_010433, intron 1 of 14)	L1MB8|LINE|L1	18321	NM_010433	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding
chipseq_peak_12357	chr7	92333250	92333961	+	0	NA	intron (NM_011807, intron 14 of 22)	intron (NM_011807, intron 14 of 22)	98635	NM_001243047	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_3292	chr12	95690647	95691057	+	0	NA	Intergenic	Intergenic	-1374	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chipseq_peak_12693	chr8	28341262	28341766	+	0	NA	Intergenic	Intergenic	-256661	NR_033590	666422	Mm.484413	NR_033590		Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo
chipseq_peak_7520	chr2	29385318	29386017	+	0	NA	intron (NM_001290489, intron 1 of 6)	intron (NM_001290489, intron 1 of 6)	7153	NM_001290489	68975	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding
chipseq_peak_11356	chr6	33763154	33763743	+	0	NA	intron (NM_009148, intron 11 of 17)	intron (NM_009148, intron 11 of 17)	-266000	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding
chipseq_peak_2060	chr10	123469067	123470098	+	0	NA	intron (NM_182807, intron 2 of 5)	Ricksha_a|DNA|MULE-MuDR	205506	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_10768	chr5	85895735	85896932	+	0	NA	Intergenic	Intergenic	169250	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_7220	chr19	31680891	31681155	+	0	NA	intron (NM_001013833, intron 1 of 17)	intron (NM_001013833, intron 1 of 17)	-16653	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding
chipseq_peak_2802	chr12	31965752	31966154	+	0	NA	intron (NM_011158, intron 7 of 10)	MER102a|DNA|hAT-Charlie	-15418	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding
chipseq_peak_10149	chr4	121003079	121004190	+	0	NA	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	13613	NM_133716	69780	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding
chipseq_peak_665	chr1	102353091	102353617	+	0	NA	Intergenic	Intergenic	1197586	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
chipseq_peak_1301	chr10	16441395	16442371	+	0	NA	Intergenic	Intergenic	650106	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA
chipseq_peak_10287	chr5	13421062	13422160	+	0	NA	intron (NM_009152, intron 1 of 16)	intron (NM_009152, intron 1 of 16)	22302	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
chipseq_peak_1476	chr10	39121499	39121801	+	0	NA	intron (NM_183254, intron 3 of 4)	MER20|DNA|hAT-Charlie	12245	NM_183254	66337	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding
chipseq_peak_7268	chr19	46499536	46501005	+	0	NA	Intergenic	CpG	-1378	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding
chipseq_peak_4297	chr14	49766357	49766967	+	0	NA	intron (NM_026142, intron 4 of 7)	intron (NM_026142, intron 4 of 7)	16705	NM_026142	67419	Mm.318710	NM_026142	ENSMUSG00000036242	3632451O06Rik	AU067705	RIKEN cDNA 3632451O06 gene	protein-coding
chipseq_peak_12660	chr8	16288608	16289632	+	0	NA	intron (NM_053171, intron 10 of 69)	intron (NM_053171, intron 10 of 69)	-120282	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_896	chr1	144501525	144502760	+	0	NA	Intergenic	LTR40b|LTR|ERVL	65525	NM_001290269	624910	Mm.389199	NM_001290269		Rgs21	EG624910	regulator of G-protein signalling 21	protein-coding
chipseq_peak_2633	chr12	5125831	5126253	+	0	NA	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	208689	NM_001099628	320817	Mm.210966	NM_001099628		Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding
chipseq_peak_3965	chr13	101450657	101451246	+	0	NA	Intergenic	Intergenic	-53371	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA
chipseq_peak_10531	chr5	57310774	57311803	+	0	NA	Intergenic	Intergenic	406631	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_11183	chr6	12752235	12752693	+	0	NA	Intergenic	Intergenic	-3211	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
chipseq_peak_1525	chr10	46293984	46294477	+	0	NA	Intergenic	MARNA|DNA|TcMar-Mariner	49481	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA
chipseq_peak_12717	chr8	31931717	31932245	+	0	NA	Intergenic	Intergenic	-13778	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding
chipseq_peak_1397	chr10	28128099	28128688	+	0	NA	intron (NM_008983, intron 1 of 31)	intron (NM_008983, intron 1 of 31)	53573	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding
chipseq_peak_8045	chr2	104572388	104573312	+	0	NA	Intergenic	Intergenic	13391	NR_040323	74959	Mm.417819	NR_040322	ENSMUSG00000086454	Platr14	4930500J02Rik	pluripotency associated transcript 14	ncRNA
chipseq_peak_9807	chr4	53535731	53536113	+	0	NA	intron (NM_001159633, intron 5 of 12)	intron (NM_001159633, intron 5 of 12)	95509	NM_001159633	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding
chipseq_peak_4426	chr14	76626069	76626610	+	0	NA	Intergenic	Intergenic	-51229	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA
chipseq_peak_13281	chr9	5496705	5497689	+	0	NA	Intergenic	Intergenic	151721	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding
chipseq_peak_6541	chr17	91739031	91739464	+	0	NA	Intergenic	Intergenic	-646445	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
chipseq_peak_1161	chr1	186137968	186138506	+	0	NA	Intergenic	Intergenic	-20927	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding
chipseq_peak_5534	chr16	23518105	23520072	+	0	NA	intron (NM_008555, intron 1 of 15)	intron (NM_008555, intron 1 of 15)	1502	NM_008555	17174	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding
chipseq_peak_9635	chr4	25954859	25956136	+	0	NA	Intergenic	Intergenic	-155494	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding
chipseq_peak_12331	chr7	91442716	91443246	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	352195	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_4830	chr15	15543797	15544273	+	0	NA	Intergenic	Intergenic	-1234066	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_11666	chr6	94111090	94112382	+	0	NA	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	125706	NR_130996	78178	Mm.452749	NR_130996		4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA
chipseq_peak_1586	chr10	54839883	54840486	+	0	NA	Intergenic	Intergenic	764262	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA
chipseq_peak_2005	chr10	114041326	114043135	+	0	NA	Intergenic	Intergenic	455652	NR_035418	100316831		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA
chipseq_peak_638	chr1	97833723	97834430	+	0	NA	intron (NM_013626, intron 22 of 25)	A-rich|Low_complexity|Low_complexity	63904	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding
chipseq_peak_13335	chr9	17392877	17393598	+	0	NA	Intergenic	Intergenic	-899030	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding
chipseq_peak_10429	chr5	40733870	40734112	+	0	NA	Intergenic	Intergenic	973700	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding
chipseq_peak_7559	chr2	37981599	37982689	+	0	NA	intron (NM_146122, intron 11 of 21)	intron (NM_146122, intron 11 of 21)	205895	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding
chipseq_peak_10408	chr5	39325312	39326272	+	0	NA	Intergenic	Intergenic	277782	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA
chipseq_peak_10151	chr4	122886364	122887232	+	0	NA	promoter-TSS (NM_007598)	promoter-TSS (NM_007598)	-741	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding
chipseq_peak_1078	chr1	176921827	176924887	+	0	NA	intron (NM_029756, intron 13 of 17)	intron (NM_029756, intron 13 of 17)	-87224	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_8872	chr3	72229777	72230193	+	0	NA	Intergenic	(TATAA)n|Simple_repeat|Simple_repeat	736881	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding
chipseq_peak_768	chr1	126656297	126656658	+	0	NA	intron (NM_176957, intron 2 of 12)	intron (NM_176957, intron 2 of 12)	-163550	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding
chipseq_peak_10960	chr5	120656251	120656907	+	0	NA	intron (NM_013832, intron 5 of 21)	intron (NM_013832, intron 5 of 21)	7391	NM_001281999	19415	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding
chipseq_peak_1970	chr10	110154190	110155839	+	0	NA	Intergenic	Intergenic	-154795	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding
chipseq_peak_8278	chr2	142334322	142335247	+	0	NA	intron (NM_001013802, intron 16 of 18)	intron (NM_001013802, intron 16 of 18)	566680	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_9466	chr4	6839948	6840810	+	0	NA	intron (NM_145711, intron 2 of 8)	intron (NM_145711, intron 2 of 8)	150344	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_3526	chr13	31248743	31250010	+	0	NA	Intergenic	Intergenic	-8290	NR_045957	73924	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA
chipseq_peak_7533	chr2	33086126	33087365	+	0	NA	intron (NM_178888, intron 1 of 28)	intron (NM_178888, intron 1 of 28)	459	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding
chipseq_peak_4129	chr14	8692322	8692758	+	0	NA	Intergenic	Intergenic	26150	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA
chipseq_peak_5363	chr15	85464554	85465272	+	0	NA	Intergenic	Intergenic	38314	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding
chipseq_peak_5917	chr16	71108465	71109737	+	0	NA	Intergenic	Intergenic	-21975	NR_040561	70972	Mm.399391	NR_040561		4931420L22Rik	-	RIKEN cDNA 4931420L22 gene	ncRNA
chipseq_peak_354	chr1	54944755	54945077	+	0	NA	Intergenic	MER121|DNA|TcMar?	-18529	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chipseq_peak_2357	chr11	52924291	52924883	+	0	NA	intron (NM_177059, intron 3 of 15)	intron (NM_177059, intron 3 of 15)	159881	NM_177059	320027	Mm.44518	NM_177059		Fstl4	B230374F23Rik|SPIG1|mKIAA1061	follistatin-like 4	protein-coding
chipseq_peak_3121	chr12	70192062	70192649	+	0	NA	intron (NM_133198, intron 19 of 19)	intron (NM_133198, intron 19 of 19)	35328	NM_133198	110095	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding
chipseq_peak_9994	chr4	85301123	85301489	+	0	NA	intron (NM_019535, intron 1 of 8)	L1MCc|LINE|L1	95850	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding
chipseq_peak_6183	chr17	10474855	10475437	+	0	NA	intron (NR_077237, intron 1 of 1)	intron (NR_077237, intron 1 of 1)	18930	NR_077238	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA
chipseq_peak_10910	chr5	111923146	111923606	+	0	NA	Intergenic	Intergenic	-161648	NR_045832	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA
chipseq_peak_12029	chr6	148626113	148626857	+	0	NA	Intergenic	Intergenic	-12176	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
chipseq_peak_2930	chr12	48011960	48012726	+	0	NA	Intergenic	Intergenic	289119	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA
chipseq_peak_5005	chr15	39078439	39078800	+	0	NA	intron (NM_026778, intron 1 of 3)	intron (NM_026778, intron 1 of 3)	1687	NM_026778	68588	Mm.41556	NM_026778	ENSMUSG00000054196	Cthrc1	1110014B07Rik	collagen triple helix repeat containing 1	protein-coding
chipseq_peak_7392	chr2	7172914	7174152	+	0	NA	intron (NM_001110231, intron 3 of 15)	intron (NM_001110231, intron 3 of 15)	-92231	NM_001110230	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_12613	chr8	9028989	9029396	+	0	NA	Intergenic	Intergenic	103096	NR_045854	71249	Mm.158635	NR_045854		4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA
chipseq_peak_13017	chr8	77714246	77714868	+	0	NA	intron (NM_010332, intron 2 of 7)	intron (NM_010332, intron 2 of 7)	9895	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding
chipseq_peak_11430	chr6	42860136	42860471	+	0	NA	Intergenic	Intergenic	22420	NM_147064	259067	Mm.451673	NM_147064	ENSMUSG00000049168	Olfr449	MOR103-1	olfactory receptor 449	protein-coding
chipseq_peak_1024	chr1	168309091	168309557	+	0	NA	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	122845	NM_008783	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding
chipseq_peak_9640	chr4	26695548	26696996	+	0	NA	intron (NR_040656, intron 1 of 2)	intron (NR_040656, intron 1 of 2)	9177	NR_040656	75360	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA
chipseq_peak_10956	chr5	120050525	120051210	+	0	NA	Intergenic	Intergenic	-65646	NM_028762	74111	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding
chipseq_peak_5607	chr16	34628301	34628715	+	0	NA	Intergenic	MTE2b-int|LTR|ERVL-MaLR	-22703	NM_030744	76378	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding
chipseq_peak_105	chr1	23097962	23099033	+	0	NA	Intergenic	Intergenic	3756	NM_025746	66755	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding
chipseq_peak_7989	chr2	94772789	94773140	+	0	NA	Intergenic	Intergenic	-334778	NM_001305258	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding
chipseq_peak_6898	chr18	58323814	58325304	+	0	NA	Intergenic	Intergenic	-114633	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding
chipseq_peak_1138	chr1	180464405	180465304	+	0	NA	intron (NM_001081227, intron 1 of 3)	intron (NM_001081227, intron 1 of 3)	18650	NM_001081227	381310	Mm.44791	NM_001081227	ENSMUSG00000053963	6330403A02Rik	ENSMUSG00000056615|Gm10001|R75555	RIKEN cDNA 6330403A02 gene	protein-coding
chipseq_peak_6150	chr17	3570984	3571554	+	0	NA	Intergenic	Intergenic	13445	NR_045303	68230	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA
chipseq_peak_5643	chr16	40369578	40369953	+	0	NA	Intergenic	Intergenic	-1163577	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_8133	chr2	118743409	118743666	+	0	NA	Intergenic	Intergenic	-2221	NM_001301269	100043272	Mm.398072	NM_001301269		Inafm2	5430417L22Rik|ENSMUSG00000074918	InaF motif containing 2	protein-coding
chipseq_peak_7865	chr2	67657094	67658468	+	0	NA	Intergenic	Intergenic	-17676	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA
chipseq_peak_3488	chr13	25899729	25900872	+	0	NA	Intergenic	Intergenic	66016	NR_045062	100503530	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	OTTMUSG00000000620	predicted gene 11351	ncRNA
chipseq_peak_9162	chr3	120439533	120440254	+	0	NA	Intergenic	Intergenic	446839	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_8219	chr2	136801084	136801483	+	0	NA	Intergenic	Intergenic	87833	NM_011428	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding
chipseq_peak_3755	chr13	81828315	81828977	+	0	NA	Intergenic	Intergenic	45354	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_8812	chr3	65656997	65658596	+	0	NA	Intergenic	Intergenic	-1492	NR_106200	102465905		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA
chipseq_peak_9113	chr3	117169797	117170166	+	0	NA	Intergenic	Intergenic	-92216	NR_038029	433646	Mm.158997	NR_038029	ENSMUSG00000028009	1700061I17Rik	-	RIKEN cDNA 1700061I17 gene	ncRNA
chipseq_peak_6983	chr18	69796239	69796609	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	-129135	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding
chipseq_peak_10612	chr5	66949309	66949599	+	0	NA	intron (NM_001001980, intron 3 of 25)	intron (NM_001001980, intron 3 of 25)	-18962	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding
chipseq_peak_8525	chr3	24316408	24316719	+	0	NA	Intergenic	Intergenic	1836744	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_13861	chr9	106612273	106612700	+	0	NA	Intergenic	L1MEc|LINE|L1	-14096	NM_001101628	100041096	Mm.477435	NM_001101628	ENSMUSG00000091129	Iqcf6	-	IQ motif containing F6	protein-coding
chipseq_peak_6971	chr18	69384814	69385557	+	0	NA	intron (NM_001083967, intron 3 of 19)	intron (NM_001083967, intron 3 of 19)	39464	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
chipseq_peak_1873	chr10	100295985	100296579	+	0	NA	Intergenic	Intergenic	-39394	NM_001166637	100043224	Mm.478257	NM_001166637	ENSMUSG00000094314	Gm4301	-	predicted gene 4301	protein-coding
chipseq_peak_10522	chr5	56208005	56208285	+	0	NA	Intergenic	Intergenic	1509774	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_6485	chr17	85279654	85280337	+	0	NA	intron (NM_028576, intron 3 of 10)	intron (NM_028576, intron 3 of 10)	189295	NM_028576	73582	Mm.260753	NM_028576		Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding
chipseq_peak_1571	chr10	53397851	53398298	+	0	NA	Intergenic	Charlie23a|DNA|hAT-Charlie	-18223	NM_001204983	100038725	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	ENSMUSG00000038594|Gm9766	centrosomal protein 85-like	protein-coding
chipseq_peak_3838	chr13	85207583	85207896	+	0	NA	intron (NM_023243, intron 6 of 8)	intron (NM_023243, intron 6 of 8)	18262	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
chipseq_peak_2507	chr11	91426721	91427213	+	0	NA	Intergenic	MER130|Unknown|Unknown	150588	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding
chipseq_peak_11782	chr6	104080205	104080824	+	0	NA	Intergenic	Intergenic	-412530	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_13683	chr9	73969417	73969937	+	0	NA	Intergenic	Intergenic	-36110	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding
chipseq_peak_5346	chr15	83149614	83150009	+	0	NA	promoter-TSS (NM_178627)	promoter-TSS (NM_178627)	166	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA
chipseq_peak_1130	chr1	179286788	179287142	+	0	NA	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	231038	NM_027188	69726	Mm.222338	NM_027188		Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding
chipseq_peak_5503	chr16	11632225	11632581	+	0	NA	intron (NM_001290148, intron 9 of 13)	intron (NM_001290148, intron 9 of 13)	-147299	NR_126430	73761	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA
chipseq_peak_2063	chr10	123577902	123579352	+	0	NA	intron (NM_182807, intron 2 of 5)	intron (NM_182807, intron 2 of 5)	314551	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_12008	chr6	146857452	146857852	+	0	NA	intron (NM_027059, intron 3 of 9)	L1MC5a|LINE|L1	7542	NM_027059	69371	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding
chipseq_peak_3846	chr13	88363577	88364509	+	0	NA	Intergenic	Intergenic	-457429	NM_010103	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding
chipseq_peak_8246	chr2	140325432	140326369	+	0	NA	intron (NM_001033296, intron 2 of 19)	intron (NM_001033296, intron 2 of 19)	63810	NM_001033296	228684	Mm.486585	NM_001033296	ENSMUSG00000074764	Sel1l2	Gm118	sel-1 suppressor of lin-12-like 2 (C. elegans)	protein-coding
chipseq_peak_8227	chr2	138315607	138316025	+	0	NA	Intergenic	Intergenic	37323	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
chipseq_peak_6210	chr17	27922314	27922774	+	0	NA	intron (NM_001286040, intron 1 of 24)	intron (NM_001286040, intron 1 of 24)	13238	NM_001286041	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding
chipseq_peak_5349	chr15	83847735	83848652	+	0	NA	intron (NM_172610, intron 4 of 6)	intron (NM_172610, intron 4 of 6)	68170	NM_172610	223726	Mm.36395	NM_172610	ENSMUSG00000041708	Mpped1	6230403M19|AW456965|D15Bwg0669e	metallophosphoesterase domain containing 1	protein-coding
chipseq_peak_6651	chr18	22935957	22936423	+	0	NA	intron (NM_001161483, intron 2 of 10)	intron (NM_001161483, intron 2 of 10)	102473	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding
chipseq_peak_4797	chr15	11745044	11745301	+	0	NA	Intergenic	Intergenic	160502	NM_001039181	18162	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding
chipseq_peak_9499	chr4	12353028	12353813	+	0	NA	Intergenic	Intergenic	-181405	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
chipseq_peak_6702	chr18	30365835	30366491	+	0	NA	Intergenic	Intergenic	93267	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_8540	chr3	26037511	26038463	+	0	NA	intron (NM_138666, intron 3 of 7)	intron (NM_138666, intron 3 of 7)	115320	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_7841	chr2	65885709	65886342	+	0	NA	intron (NM_153409, intron 3 of 6)	intron (NM_153409, intron 3 of 6)	40258	NM_001290666	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding
chipseq_peak_167	chr1	30948159	30948726	+	0	NA	intron (NM_011200, intron 1 of 5)	intron (NM_011200, intron 1 of 5)	1268	NR_002688	433406	Mm.389003	NR_002688		Gm13363	OTTMUSG00000011595	predicted gene 13363	pseudo
chipseq_peak_2210	chr11	26008028	26010556	+	0	NA	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-192948	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
chipseq_peak_8324	chr2	152471047	152471440	+	0	NA	Intergenic	RLTR18-int|LTR|ERVK	-5820	NM_176950	319579	Mm.190454	NM_176950	ENSMUSG00000049560	Defb20	9230107O10Rik|BD-20|mBD-20	defensin beta 20	protein-coding
chipseq_peak_4318	chr14	59715854	59716559	+	0	NA	intron (NM_015803, intron 32 of 35)	intron (NM_015803, intron 32 of 35)	90925	NM_145463	219134	Mm.275409	NM_145463	ENSMUSG00000044461	Shisa2	9430059P22Rik|MAd2|Tmem46|mShisa|shisa	shisa family member 2	protein-coding
chipseq_peak_7538	chr2	33935843	33936214	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-48082	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding
chipseq_peak_2948	chr12	49897656	49898337	+	0	NA	Intergenic	Intergenic	-417134	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_6299	chr17	52347993	52349386	+	0	NA	Intergenic	Intergenic	-254020	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
chipseq_peak_13643	chr9	62960176	62960822	+	0	NA	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	20380	NM_019663	56469	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding
chipseq_peak_8141	chr2	122753732	122754066	+	0	NA	Intergenic	Intergenic	-11460	NM_001162503	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding
chipseq_peak_8670	chr3	47958218	47958557	+	0	NA	Intergenic	Intergenic	68372	NR_040408	666202	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo
chipseq_peak_5110	chr15	50991741	50992068	+	0	NA	Intergenic	Intergenic	-101863	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_1519	chr10	46012023	46012275	+	0	NA	Intergenic	Intergenic	204445	NR_040624	320363	Mm.123343	NR_040624		D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA
chipseq_peak_7007	chr18	73318614	73318873	+	0	NA	Intergenic	Intergenic	-253962	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 homolog C (C. elegans)	protein-coding
chipseq_peak_6720	chr18	31191383	31192004	+	0	NA	intron (NM_009065, intron 3 of 4)	Tigger13a|DNA|TcMar-Tigger	125435	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_12966	chr8	66714346	66715062	+	0	NA	Intergenic	Intergenic	17282	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding
chipseq_peak_6725	chr18	31662561	31663097	+	0	NA	intron (NM_172965, intron 7 of 20)	intron (NM_172965, intron 7 of 20)	28446	NM_172965	269003	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding
chipseq_peak_10486	chr5	49638346	49638821	+	0	NA	Intergenic	Intergenic	-352924	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
chipseq_peak_2632	chr12	5119176	5119769	+	0	NA	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	202119	NM_001099628	320817	Mm.210966	NM_001099628		Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding
chipseq_peak_3206	chr12	78829651	78829975	+	0	NA	exon (NM_019579, exon 12 of 15)	exon (NM_019579, exon 12 of 15)	31825	NM_023721	73834	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding
chipseq_peak_3712	chr13	76388736	76389359	+	0	NA	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	4086	NM_030174	78771	Mm.316249	NM_030174		Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding
chipseq_peak_11306	chr6	26930947	26932325	+	0	NA	Intergenic	Intergenic	1000210	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA
chipseq_peak_13317	chr9	13693766	13694695	+	0	NA	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	31770	NM_173776	270118	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like 2 (Drosophila)	protein-coding
chipseq_peak_13122	chr8	99493403	99494070	+	0	NA	intron (NR_132435, intron 1 of 4)	intron (NR_132435, intron 1 of 4)	77062	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_12225	chr7	74944238	74945822	+	0	NA	Intergenic	L1MEd|LINE|L1	-85181	NR_131122	75205	Mm.399304	NR_131122		4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA
chipseq_peak_8213	chr2	136504699	136505344	+	0	NA	Intergenic	Intergenic	-27300	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding
chipseq_peak_971	chr1	159867400	159867790	+	0	NA	intron (NM_022312, intron 7 of 22)	intron (NM_022312, intron 7 of 22)	-176785	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding
chipseq_peak_14139	chrX	166749072	166749873	+	0	NA	Intergenic	Intergenic	87447	NR_046015	382255	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA
chipseq_peak_1765	chr10	89731876	89732623	+	0	NA	promoter-TSS (NM_025914)	promoter-TSS (NM_025914)	46	NM_025914	67019	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding
chipseq_peak_818	chr1	134899886	134900097	+	0	NA	intron (NM_001081307, intron 2 of 23)	intron (NM_001081307, intron 2 of 23)	55949	NM_001081307	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding
chipseq_peak_3527	chr13	31472455	31472738	+	0	NA	Intergenic	L1M5|LINE|L1	-85574	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding
chipseq_peak_2821	chr12	33582772	33583341	+	0	NA	Intergenic	Intergenic	153432	NM_172253	28071	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding
chipseq_peak_5433	chr15	96178433	96178782	+	0	NA	Intergenic	Intergenic	-4193	NR_028311	100043335	Mm.247464	NR_028311		Gm4371	EG667874|Gm8854	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo
chipseq_peak_9390	chr3	151653090	151654623	+	0	NA	Intergenic	Intergenic	96103	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding
chipseq_peak_275	chr1	41889371	41892319	+	0	NA	Intergenic	Intergenic	-709593	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_12843	chr8	49543189	49544091	+	0	NA	Intergenic	Intergenic	-824472	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
chipseq_peak_9884	chr4	72013715	72014645	+	0	NA	Intergenic	Intergenic	186713	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_5873	chr16	66634901	66636100	+	0	NA	Intergenic	Intergenic	-21618	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA
chipseq_peak_10844	chr5	102086439	102087435	+	0	NA	Intergenic	B3|SINE|B2	-17016	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding
chipseq_peak_2465	chr11	85312867	85313157	+	0	NA	intron (NM_016910, intron 1 of 5)	intron (NM_016910, intron 1 of 5)	1758	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding
chipseq_peak_11344	chr6	33256992	33257413	+	0	NA	intron (NM_009148, intron 1 of 17)	intron (NM_009148, intron 1 of 17)	8052	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
chipseq_peak_1487	chr10	40406530	40407099	+	0	NA	intron (NM_001291817, intron 2 of 11)	intron (NM_001291817, intron 2 of 11)	57506	NM_198164	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding
chipseq_peak_8788	chr3	61255388	61256174	+	0	NA	Intergenic	Intergenic	-108726	NM_028712	74012	Mm.422674	NM_028712		Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding
chipseq_peak_4566	chr14	95775615	95776062	+	0	NA	Intergenic	Intergenic	-105428	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding
chipseq_peak_12935	chr8	60953684	60955126	+	0	NA	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	394	NM_173876	12725	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding
chipseq_peak_8630	chr3	40157809	40158998	+	0	NA	Intergenic	(TAGA)n|Simple_repeat|Simple_repeat	364509	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_2988	chr12	52353381	52354356	+	0	NA	Intergenic	Intergenic	-162209	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding
chipseq_peak_9883	chr4	71840113	71840628	+	0	NA	Intergenic	Intergenic	360523	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_6600	chr18	15725268	15726055	+	0	NA	Intergenic	Intergenic	-7615	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
chipseq_peak_8014	chr2	98392657	98393151	+	0	NA	Intergenic	Intergenic	925247	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_8557	chr3	28466799	28467461	+	0	NA	intron (NM_001163007, intron 2 of 31)	intron (NM_001163007, intron 2 of 31)	47187	NR_130342	100628591		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA
chipseq_peak_1908	chr10	105034787	105035733	+	0	NA	Intergenic	Intergenic	539219	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
chipseq_peak_3746	chr13	80827238	80827807	+	0	NA	Intergenic	Intergenic	-55900	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding
chipseq_peak_3689	chr13	69972204	69972689	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-49513	NR_131156	100042291	Mm.412604	NR_131156		Gm3772	-	predicted gene 3772	ncRNA
chipseq_peak_12017	chr6	148385431	148385733	+	0	NA	intron (NM_198967, intron 5 of 19)	Charlie1a|DNA|hAT-Charlie	30926	NR_003634	66184	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo
chipseq_peak_8700	chr3	52686076	52686391	+	0	NA	Intergenic	Intergenic	-53491	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA
chipseq_peak_7999	chr2	96287550	96287870	+	0	NA	Intergenic	Intergenic	-30459	NM_001289743	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_13301	chr9	10179830	10180369	+	0	NA	intron (NM_001170787, intron 3 of 24)	intron (NM_001170787, intron 3 of 24)	285668	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_7214	chr19	31114549	31116024	+	0	NA	intron (NM_011160, intron 3 of 17)	intron (NM_011160, intron 3 of 17)	32445	NM_031249	83410	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding
chipseq_peak_7657	chr2	45486374	45486869	+	0	NA	Intergenic	Intergenic	-209984	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
chipseq_peak_9023	chr3	96058430	96058939	+	0	NA	promoter-TSS (NM_013841)	promoter-TSS (NM_013841)	-229	NM_013841	22365	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45 (yeast)	protein-coding
chipseq_peak_7045	chr18	86284237	86285078	+	0	NA	Intergenic	Intergenic	-110295	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chipseq_peak_10992	chr5	126531101	126531626	+	0	NA	Intergenic	Charlie1|DNA|hAT-Charlie	-499426	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA
chipseq_peak_8715	chr3	53623293	53623728	+	0	NA	intron (NM_172862, intron 2 of 23)	intron (NM_172862, intron 2 of 23)	33845	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding
chipseq_peak_5356	chr15	83997013	83999319	+	0	NA	intron (NM_029946, intron 6 of 31)	intron (NM_029946, intron 6 of 31)	-62071	NM_001161628	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding
chipseq_peak_8284	chr2	142548656	142549309	+	0	NA	Intergenic	Intergenic	352482	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_14152	chrY	90797073	90798262	+	0	NA	intron (NM_133362, intron 2 of 2)	L1_Mm|LINE|L1	12225	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding
chipseq_peak_701	chr1	108572825	108574091	+	0	NA	Intergenic	Intergenic	656199	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
chipseq_peak_12581	chr8	6111127	6111810	+	0	NA	Intergenic	Intergenic	-1006236	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_5785	chr16	54622981	54623617	+	0	NA	Intergenic	Intergenic	659938	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
chipseq_peak_6851	chr18	54580491	54581061	+	0	NA	Intergenic	Intergenic	-30968	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA
chipseq_peak_12067	chr7	37600267	37601257	+	0	NA	intron (NM_172385, intron 3 of 5)	intron (NM_172385, intron 3 of 5)	168990	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding
chipseq_peak_7168	chr19	26381608	26384481	+	0	NA	Intergenic	Intergenic	-222116	NM_011416	67155	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
chipseq_peak_12491	chr7	121450933	121451447	+	0	NA	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	58894	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chipseq_peak_5201	chr15	62565596	62566391	+	0	NA	Intergenic	Intergenic	-346542	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_1565	chr10	52819581	52820502	+	0	NA	intron (NM_178675, intron 1 of 7)	intron (NM_178675, intron 1 of 7)	129540	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
chipseq_peak_1246	chr10	9204163	9204489	+	0	NA	Intergenic	Intergenic	-318256	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding
chipseq_peak_3633	chr13	52817974	52818858	+	0	NA	Intergenic	Intergenic	-61211	NR_027893	105404	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA
chipseq_peak_3795	chr13	83345839	83346883	+	0	NA	Intergenic	Intergenic	-157673	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_4243	chr14	33545074	33546293	+	0	NA	Intergenic	Intergenic	-43587	NM_008978	19256	Mm.8019	NM_008978	ENSMUSG00000021940	Ptpn20	typ	protein tyrosine phosphatase, non-receptor type 20	protein-coding
chipseq_peak_8099	chr2	113419317	113420337	+	0	NA	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-21237	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|ld	formin 1	protein-coding
chipseq_peak_8442	chr3	9200014	9200587	+	0	NA	Intergenic	Intergenic	-50267	NM_177660	229055	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding
chipseq_peak_5941	chr16	72887791	72888649	+	0	NA	intron (NM_019413, intron 2 of 28)	intron (NM_019413, intron 2 of 28)	225071	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_7744	chr2	57060423	57061126	+	0	NA	Intergenic	Intergenic	54264	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding
chipseq_peak_3949	chr13	99303478	99304371	+	0	NA	Intergenic	Intergenic	40754	NM_026873	68927	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding
chipseq_peak_2604	chr11	112071583	112072060	+	0	NA	Intergenic	Intergenic	639535	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA
chipseq_peak_3294	chr12	96488496	96489747	+	0	NA	Intergenic	Intergenic	-441899	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo
chipseq_peak_5708	chr16	46804730	46805246	+	0	NA	Intergenic	Intergenic	-308021	NM_021496	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
chipseq_peak_2820	chr12	33578113	33578412	+	0	NA	Intergenic	Intergenic	148638	NM_172253	28071	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding
chipseq_peak_2644	chr12	6117401	6117690	+	0	NA	Intergenic	Intergenic	741043	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA
chipseq_peak_4130	chr14	8789280	8789641	+	0	NA	Intergenic	L1MB2|LINE|L1	123070	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA
chipseq_peak_11420	chr6	41754509	41755392	+	0	NA	Intergenic	Intergenic	17347	NM_146576	258569	Mm.377571	NM_146576	ENSMUSG00000045479	Olfr459	MOR120-1	olfactory receptor 459	protein-coding
chipseq_peak_8721	chr3	53705754	53706489	+	0	NA	Intergenic	Intergenic	-48766	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding
chipseq_peak_3534	chr13	36493635	36493997	+	0	NA	intron (NM_024274, intron 6 of 6)	intron (NM_024274, intron 6 of 6)	240661	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding
chipseq_peak_2401	chr11	68657466	68658143	+	0	NA	Intergenic	Intergenic	-34111	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding
chipseq_peak_13254	chr8	127107861	127108405	+	0	NA	intron (NM_001309391, intron 1 of 24)	intron (NM_001309391, intron 1 of 24)	44077	NM_033620	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_11189	chr6	13215484	13216306	+	0	NA	intron (NM_001013757, intron 2 of 11)	intron (NM_001013757, intron 2 of 11)	9070	NM_001013757	232585	Mm.389082	NM_001013757	ENSMUSG00000079679	Vwde	Gm467	von Willebrand factor D and EGF domains	protein-coding
chipseq_peak_1966	chr10	109779112	109780698	+	0	NA	intron (NM_001081035, intron 12 of 38)	intron (NM_001081035, intron 12 of 38)	220314	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding
chipseq_peak_7790	chr2	61497673	61498516	+	0	NA	Intergenic	Intergenic	-80492	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding
chipseq_peak_110	chr1	24074497	24074743	+	0	NA	intron (NM_026604, intron 3 of 20)	MLT1H|LTR|ERVL-MaLR	25721	NM_026604	68187	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding
chipseq_peak_6398	chr17	69625675	69626273	+	0	NA	Intergenic	Intergenic	186648	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
chipseq_peak_1318	chr10	18661055	18661285	+	0	NA	intron (NM_001033258, intron 7 of 33)	intron (NM_001033258, intron 7 of 33)	82588	NM_001033258	215821	Mm.40491	NM_001033258	ENSMUSG00000019852	Arfgef3	9630004D11|B930094H20Rik|BIG3|D10Bwg1379e|mKIAA1244	ARFGEF family member 3	protein-coding
chipseq_peak_12055	chr7	34778311	34778755	+	0	NA	intron (NM_175140, intron 1 of 3)	intron (NM_175140, intron 1 of 3)	34178	NM_175140	68947	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chipseq_peak_11088	chr5	143598756	143599245	+	0	NA	Intergenic	Intergenic	-23447	NM_011182	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding
chipseq_peak_7286	chr19	50448888	50449337	+	0	NA	intron (NM_001252501, intron 2 of 25)	L1MC2|LINE|L1	229534	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_5778	chr16	54091091	54091652	+	0	NA	Intergenic	Intergenic	1191866	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
chipseq_peak_5862	chr16	64551887	64552169	+	0	NA	Intergenic	RMER6A|LTR|ERVK	-72894	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding
chipseq_peak_9531	chr4	14060998	14061429	+	0	NA	Intergenic	Intergenic	230096	NR_131155	100040030	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA
chipseq_peak_4836	chr15	16925453	16926995	+	0	NA	Intergenic	Intergenic	148123	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_6139	chr17	3248412	3249361	+	0	NA	Intergenic	Intergenic	-77687	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
chipseq_peak_2052	chr10	122771365	122772082	+	0	NA	intron (NM_176919, intron 1 of 8)	L1M1|LINE|L1	92408	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA
chipseq_peak_6729	chr18	33063141	33064469	+	0	NA	intron (NM_009793, intron 1 of 10)	intron (NM_009793, intron 1 of 10)	124764	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding
chipseq_peak_862	chr1	140915588	140915890	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-259337	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_11218	chr6	14720076	14721470	+	0	NA	intron (NM_080464, intron 3 of 3)	intron (NM_080464, intron 3 of 3)	34501	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding
chipseq_peak_6612	chr18	19112171	19112567	+	0	NA	Intergenic	Intergenic	889728	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_8846	chr3	68545849	68546506	+	0	NA	intron (NM_001282045, intron 2 of 7)	MIRb|SINE|MIR	-26191	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_5594	chr16	31962409	31963626	+	0	NA	3' UTR (NM_177103, exon 10 of 10)	3' UTR (NM_177103, exon 10 of 10)	14471	NM_026554	68092	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding
chipseq_peak_3812	chr13	83865294	83868259	+	0	NA	Intergenic	Intergenic	-24432	NR_036594	72677	Mm.245636	NR_036594	ENSMUSG00000100891	2810049E08Rik	-	RIKEN cDNA 2810049E08 gene	ncRNA
chipseq_peak_8710	chr3	53377152	53377759	+	0	NA	Intergenic	Intergenic	85803	NM_172501	212114	Mm.85744	NM_172501		Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding
chipseq_peak_7399	chr2	7348839	7349210	+	0	NA	intron (NM_001110231, intron 2 of 15)	intron (NM_001110231, intron 2 of 15)	46976	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_26	chr1	9696802	9697130	+	0	NA	intron (NM_008651, intron 1 of 15)	intron (NM_008651, intron 1 of 15)	3243	NM_008651	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding
chipseq_peak_5688	chr16	43577094	43577609	+	0	NA	intron (NM_019778, intron 6 of 8)	intron (NM_019778, intron 6 of 8)	-63304	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA
chipseq_peak_298	chr1	45766183	45766459	+	0	NA	Intergenic	Intergenic	-29180	NM_028599	73674	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding
chipseq_peak_1710	chr10	72951661	72952152	+	0	NA	Intergenic	Intergenic	134799	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA
chipseq_peak_6634	chr18	21654698	21655228	+	0	NA	intron (NM_001271580, intron 3 of 3)	intron (NM_001271580, intron 3 of 3)	-2595	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding
chipseq_peak_7787	chr2	60949371	60950426	+	0	NA	intron (NM_020296, intron 1 of 13)	L1ME3|LINE|L1	13306	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
chipseq_peak_2750	chr12	26129491	26129949	+	0	NA	intron (NR_131149, intron 3 of 4)	intron (NR_131149, intron 3 of 4)	80785	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
chipseq_peak_13241	chr8	123724302	123725811	+	0	NA	Intergenic	Intergenic	-8902	NR_040702	234863	Mm.246601	NR_040702		6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA
chipseq_peak_2050	chr10	122711334	122711731	+	0	NA	intron (NM_176919, intron 1 of 8)	intron (NM_176919, intron 1 of 8)	32217	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA
chipseq_peak_11318	chr6	28753276	28754372	+	0	NA	intron (NM_019776, intron 15 of 23)	intron (NM_019776, intron 15 of 23)	77923	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding
chipseq_peak_7127	chr19	21446139	21446410	+	0	NA	intron (NM_010266, intron 1 of 13)	intron (NM_010266, intron 1 of 13)	26387	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581	guanine deaminase	protein-coding
chipseq_peak_4557	chr14	94098793	94099213	+	0	NA	Intergenic	Intergenic	-208334	NM_001271798	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_1427	chr10	31491666	31492628	+	0	NA	Intergenic	Intergenic	-46226	NM_009413	21987	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding
chipseq_peak_190	chr1	32700850	32701742	+	0	NA	Intergenic	Intergenic	-154003	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding
chipseq_peak_12395	chr7	96819411	96819824	+	0	NA	intron (NM_001310760, intron 17 of 32)	intron (NM_001310760, intron 17 of 32)	-18068	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA
chipseq_peak_2134	chr11	12168162	12168885	+	0	NA	Intergenic	Intergenic	-131103	NM_010345	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding
chipseq_peak_12233	chr7	75220663	75221955	+	0	NA	intron (NM_153579, intron 1 of 12)	ORR1D1|LTR|ERVL-MaLR	87077	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding
chipseq_peak_1259	chr10	10085989	10086951	+	0	NA	Intergenic	Intergenic	-185430	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding
chipseq_peak_10854	chr5	102714896	102715980	+	0	NA	intron (NM_029270, intron 3 of 9)	MIR3|SINE|MIR	-53372	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
chipseq_peak_9943	chr4	78606706	78607669	+	0	NA	Intergenic	Intergenic	13140	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_6099	chr16	89537374	89537786	+	0	NA	Intergenic	Intergenic	-29257	NM_027771	71363	Mm.158680	NM_027771	ENSMUSG00000056706	Krtap7-1	5430433J05Rik	keratin associated protein 7-1	protein-coding
chipseq_peak_7805	chr2	62431211	62432159	+	0	NA	Intergenic	Intergenic	-19454	NM_001159543	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding
chipseq_peak_11824	chr6	108236307	108238031	+	0	NA	intron (NM_010585, intron 3 of 61)	intron (NM_010585, intron 3 of 61)	24073	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding
chipseq_peak_2564	chr11	108204418	108205373	+	0	NA	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	138993	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding
chipseq_peak_12023	chr6	148553482	148554136	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	60500	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
chipseq_peak_10525	chr5	56642806	56643803	+	0	NA	Intergenic	Intergenic	1074615	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_7409	chr2	7588028	7588832	+	0	NA	Intergenic	Intergenic	-192232	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_10229	chr4	152405186	152405636	+	0	NA	intron (NM_001252656, intron 6 of 15)	intron (NM_001252656, intron 6 of 15)	43444	NM_001252655	16498	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding
chipseq_peak_6986	chr18	69865602	69866172	+	0	NA	Intergenic	Intergenic	-59672	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding
chipseq_peak_3269	chr12	92644973	92645603	+	0	NA	Intergenic	Intergenic	-796131	NM_001039089	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chipseq_peak_13972	chrX	20332852	20333226	+	0	NA	Intergenic	Intergenic	-31442	NR_110966	19889	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog (human)	protein-coding
chipseq_peak_11282	chr6	23003348	23004272	+	0	NA	intron (NM_001081306, intron 12 of 29)	intron (NM_001081306, intron 12 of 29)	128308	NM_001311064	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding
chipseq_peak_11740	chr6	101425888	101426841	+	0	NA	Intergenic	Intergenic	-48467	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
chipseq_peak_10204	chr4	139177264	139177698	+	0	NA	intron (NR_033543, intron 2 of 2)	intron (NR_033543, intron 2 of 2)	3174	NR_033543	100038595	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	ENSMUSG00000073739|OTTMUSG00000009902|OTTMUSG00000033208	predicted gene 16287	ncRNA
chipseq_peak_11221	chr6	14977159	14977409	+	0	NA	intron (NM_053242, intron 1 of 18)	intron (NM_053242, intron 1 of 18)	75935	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding
chipseq_peak_1756	chr10	87333249	87333657	+	0	NA	Intergenic	Intergenic	160207	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute complex homolog 1 (Drosophila)	protein-coding
chipseq_peak_4640	chr14	108402802	108403185	+	0	NA	Intergenic	Intergenic	511246	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_10393	chr5	35879260	35879716	+	0	NA	intron (NM_001177696, intron 21 of 21)	intron (NM_001177696, intron 21 of 21)	-13831	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding
chipseq_peak_3088	chr12	67045105	67045744	+	0	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	177125	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_2137	chr11	12579327	12579787	+	0	NA	Intergenic	Intergenic	-114597	NM_001282993	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
chipseq_peak_2177	chr11	21544796	21546577	+	0	NA	Intergenic	Intergenic	26248	NM_001316675	17449	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding
chipseq_peak_6743	chr18	35214237	35215815	+	0	NA	promoter-TSS (NM_178005)	promoter-TSS (NM_178005)	-2	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding
chipseq_peak_13524	chr9	48736510	48736855	+	0	NA	intron (NM_001033324, intron 3 of 6)	intron (NM_001033324, intron 3 of 6)	99263	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding
chipseq_peak_12417	chr7	101263306	101263879	+	0	NA	intron (NM_199012, intron 14 of 20)	intron (NM_199012, intron 14 of 20)	38496	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding
chipseq_peak_13573	chr9	53829477	53829904	+	0	NA	Intergenic	Intergenic	-20561	NM_025540	66402	Mm.29132	NM_025540	ENSMUSG00000042045	Sln	2310045A07Rik	sarcolipin	protein-coding
chipseq_peak_4772	chr15	7126089	7127240	+	0	NA	Intergenic	Intergenic	-2908	NM_001113386	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding
chipseq_peak_6599	chr18	15621398	15622299	+	0	NA	intron (NM_199055, intron 1 of 3)	intron (NM_199055, intron 1 of 3)	96198	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
chipseq_peak_9681	chr4	31365992	31367012	+	0	NA	Intergenic	Intergenic	-597605	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_10568	chr5	62642188	62642880	+	0	NA	intron (NM_178407, intron 23 of 32)	intron (NM_178407, intron 23 of 32)	123643	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
chipseq_peak_10272	chr5	10633206	10633550	+	0	NA	Intergenic	Intergenic	-231651	NR_003596	623849	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo
chipseq_peak_8942	chr3	80774359	80774743	+	0	NA	intron (NM_001039195, intron 2 of 12)	intron (NM_001039195, intron 2 of 12)	28240	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_11164	chr6	11576140	11576467	+	0	NA	Intergenic	Intergenic	331143	NM_010886	17992	Mm.415865	NM_010886	ENSMUSG00000029632	Ndufa4	MLRQ	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	protein-coding
chipseq_peak_4423	chr14	76568107	76568529	+	0	NA	Intergenic	Intergenic	-11429	NR_027699	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding
chipseq_peak_9626	chr4	24920051	24920394	+	0	NA	Intergenic	Intergenic	22139	NM_026742	68493	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding
chipseq_peak_12125	chr7	54636193	54637220	+	0	NA	Intergenic	Intergenic	-198539	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_13607	chr9	59232455	59233555	+	0	NA	Intergenic	Intergenic	-58567	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding
chipseq_peak_7983	chr2	94071988	94072287	+	0	NA	intron (NM_019657, intron 4 of 10)	intron (NM_019657, intron 4 of 10)	-61407	NM_026944	69113	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB, alkylation repair homolog 3 (E. coli)	protein-coding
chipseq_peak_9637	chr4	26132172	26132438	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	214347	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding
chipseq_peak_5312	chr15	72382583	72383153	+	0	NA	Intergenic	Intergenic	163411	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding
chipseq_peak_4198	chr14	23194648	23195282	+	0	NA	Intergenic	Intergenic	-100394	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA
chipseq_peak_12612	chr8	8992634	8993206	+	0	NA	Intergenic	Intergenic	139368	NR_045854	71249	Mm.158635	NR_045854		4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA
chipseq_peak_13058	chr8	86581847	86582558	+	0	NA	Intergenic	Intergenic	-15612	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
chipseq_peak_3419	chr13	9904547	9904958	+	0	NA	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-139438	NM_144516	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding
chipseq_peak_9472	chr4	7215212	7215872	+	0	NA	Intergenic	Intergenic	-224819	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_11747	chr6	101890578	101891051	+	0	NA	Intergenic	Intergenic	116565	NR_027989	207157	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157|ENSMUSG00000052236	predicted gene 9871	ncRNA
chipseq_peak_13225	chr8	118418355	118418988	+	0	NA	intron (NM_019707, intron 1 of 13)	intron (NM_019707, intron 1 of 13)	135060	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding
chipseq_peak_9706	chr4	33390366	33391006	+	0	NA	intron (NM_011884, intron 12 of 15)	AT_rich|Low_complexity|Low_complexity	-47395	NR_106198	102465904		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA
chipseq_peak_803	chr1	131770616	131771007	+	0	NA	TTS (NM_177243)	TTS (NM_177243)	-26584	NM_178079	212933	Mm.23844	NM_178079	ENSMUSG00000042251	Pm20d1	4732466D17Rik|AI098026	peptidase M20 domain containing 1	protein-coding
chipseq_peak_4109	chr13	117334010	117334573	+	0	NA	Intergenic	Intergenic	113718	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding
chipseq_peak_1623	chr10	64243376	64243791	+	0	NA	intron (NM_001164376, intron 7 of 17)	intron (NM_001164376, intron 7 of 17)	-153328	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_5944	chr16	72912949	72914129	+	0	NA	intron (NM_019413, intron 3 of 28)	intron (NM_019413, intron 3 of 28)	250390	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_4946	chr15	29085771	29086396	+	0	NA	Intergenic	Intergenic	882317	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
chipseq_peak_5070	chr15	44915687	44916866	+	0	NA	Intergenic	Intergenic	34882	NR_033609	239410	Mm.352401	NR_033609		A930017M01Rik	Gm305	Smg-5 homolog, nonsense mediated mRNA decay factor pseudogene	pseudo
chipseq_peak_1017	chr1	166846430	166846965	+	0	NA	Intergenic	L1M7|LINE|L1	153033	NR_037988	100503962	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA
chipseq_peak_9281	chr3	139508808	139509753	+	0	NA	intron (NM_198659, intron 11 of 13)	intron (NM_198659, intron 11 of 13)	303387	NM_198659	381476	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding
chipseq_peak_6483	chr17	84582023	84582434	+	0	NA	intron (NM_177606, intron 15 of 29)	intron (NM_177606, intron 15 of 29)	-44271	NM_172256	213575	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding
chipseq_peak_215	chr1	35361481	35361961	+	0	NA	Intergenic	Intergenic	511762	NM_175421	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding
chipseq_peak_11310	chr6	27617843	27618683	+	0	NA	intron (NM_008174, intron 7 of 10)	intron (NM_008174, intron 7 of 10)	318487	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA
chipseq_peak_612	chr1	94126186	94126630	+	0	NA	Intergenic	Intergenic	-73855	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding
chipseq_peak_11289	chr6	24200795	24201833	+	0	NA	Intergenic	Intergenic	-33222	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding
chipseq_peak_9625	chr4	24752497	24753151	+	0	NA	intron (NM_001033531, intron 3 of 9)	intron (NM_001033531, intron 3 of 9)	98262	NM_001033531	212390	Mm.412074	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding
chipseq_peak_12470	chr7	117185848	117186378	+	0	NA	Intergenic	Intergenic	-194866	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_11789	chr6	104760481	104761910	+	0	NA	intron (NM_017383, intron 7 of 22)	intron (NM_017383, intron 7 of 22)	268151	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_9972	chr4	81172406	81172720	+	0	NA	Intergenic	Intergenic	261877	NM_026821	52829	Mm.273986	NM_026821		Lurap1l	1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1	leucine rich adaptor protein 1-like	protein-coding
chipseq_peak_5060	chr15	44705589	44706665	+	0	NA	intron (NM_001285843, intron 1 of 5)	intron (NM_001285843, intron 1 of 5)	361	NM_001285843	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_9518	chr4	13286211	13286896	+	0	NA	Intergenic	Intergenic	379716	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_2741	chr12	25690197	25690545	+	0	NA	Intergenic	Intergenic	520134	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
chipseq_peak_12818	chr8	47783598	47784207	+	0	NA	Intergenic	Intergenic	-38241	NM_001111318	100039801	Mm.471595	NM_001111318	ENSMUSG00000061974	Cldn24	ENSMUSG00000061974|Gm10107	claudin 24	protein-coding
chipseq_peak_13713	chr9	82113944	82115560	+	0	NA	Intergenic	Intergenic	251008	NM_175213	75033	Mm.335329	NM_175213	ENSMUSG00000043289	Mei4	4930486G11Rik	meiosis-specific, MEI4 homolog (S. cerevisiae)	protein-coding
chipseq_peak_8473	chr3	16816687	16818823	+	0	NA	Intergenic	Intergenic	634572	NR_027375	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding
chipseq_peak_10850	chr5	102333691	102334703	+	0	NA	Intergenic	Intergenic	-147194	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
chipseq_peak_3104	chr12	68774729	68775986	+	0	NA	Intergenic	Intergenic	383829	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding
chipseq_peak_4719	chr14	117813448	117813767	+	0	NA	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	140240	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA
chipseq_peak_5932	chr16	72500466	72501641	+	0	NA	Intergenic	Intergenic	-162096	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_10280	chr5	12332433	12333752	+	0	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	-50074	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
chipseq_peak_9697	chr4	32293580	32294064	+	0	NA	Intergenic	Intergenic	-123613	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology 2	protein-coding
chipseq_peak_6723	chr18	31438915	31439256	+	0	NA	3' UTR (NM_009308, exon 4 of 4)	3' UTR (NM_009308, exon 4 of 4)	8330	NM_009308	20983	Mm.233846	NM_009308	ENSMUSG00000024261	Syt4	SytIV	synaptotagmin IV	protein-coding
chipseq_peak_1858	chr10	99350002	99350946	+	0	NA	Intergenic	Intergenic	87243	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chipseq_peak_6539	chr17	91451394	91452116	+	0	NA	Intergenic	Intergenic	-358953	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
chipseq_peak_13330	chr9	16841652	16842114	+	0	NA	Intergenic	Intergenic	-463652	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT tumor suppressor homolog 3 (Drosophila)	protein-coding
chipseq_peak_2665	chr12	7327845	7329434	+	0	NA	Intergenic	Intergenic	51691	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_11346	chr6	33453846	33455591	+	0	NA	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	205568	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
chipseq_peak_11901	chr6	121154551	121155442	+	0	NA	Intergenic	Intergenic	-23974	NM_001270475	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
chipseq_peak_1738	chr10	84357954	84359344	+	0	NA	Intergenic	Intergenic	81822	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding
chipseq_peak_13494	chr9	42530044	42530986	+	0	NA	intron (NM_175481, intron 19 of 20)	L3b|LINE|CR1	-58289	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding
chipseq_peak_189	chr1	32632550	32633544	+	0	NA	intron (NM_133235, intron 7 of 8)	intron (NM_133235, intron 7 of 8)	-85754	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding
chipseq_peak_12281	chr7	84679000	84679707	+	0	NA	promoter-TSS (NM_022985)	promoter-TSS (NM_022985)	-2	NM_022985	65098	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding
chipseq_peak_2145	chr11	14258675	14259296	+	0	NA	Intergenic	Intergenic	-79944	NR_131011	75280	Mm.108492	NR_131011		4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA
chipseq_peak_3197	chr12	77997887	77998240	+	0	NA	Intergenic	Intergenic	-228592	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding
chipseq_peak_7445	chr2	8632628	8633958	+	0	NA	Intergenic	L1MCb|LINE|L1	-556222	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_7861	chr2	67486975	67487548	+	0	NA	intron (NM_001024618, intron 3 of 8)	intron (NM_001024618, intron 3 of 8)	41259	NM_001024618	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding
chipseq_peak_12773	chr8	40583531	40583780	+	0	NA	intron (NM_001040699, intron 6 of 13)	intron (NM_001040699, intron 6 of 13)	51137	NM_001040699	54384	Mm.294871	NM_019433		Mtmr7	-	myotubularin related protein 7	protein-coding
chipseq_peak_5255	chr15	66676292	66676988	+	0	NA	intron (NM_009375, intron 5 of 47)	intron (NM_009375, intron 5 of 47)	5870	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding
chipseq_peak_6546	chr17	93140993	93141628	+	0	NA	Intergenic	Intergenic	-57707	NM_001315503	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
chipseq_peak_2324	chr11	42785441	42786926	+	0	NA	Intergenic	MT2B1|LTR|ERVL	-363694	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding
chipseq_peak_5360	chr15	85179570	85179944	+	0	NA	Intergenic	Intergenic	-23625	NR_040360	100502602	Mm.390830	NR_040360		Gm19277	-	predicted gene, 19277	ncRNA
chipseq_peak_5695	chr16	44525470	44527541	+	0	NA	intron (NM_172506, intron 1 of 18)	intron (NM_172506, intron 1 of 18)	31624	NR_037242	100526478		NR_037242	ENSMUSG00000093046	Mir3081	mir-3081|mmu-mir-3081	microRNA 3081	ncRNA
chipseq_peak_12418	chr7	101267817	101268460	+	0	NA	intron (NM_199012, intron 14 of 20)	intron (NM_199012, intron 14 of 20)	33950	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding
chipseq_peak_5451	chr15	102583623	102588640	+	0	NA	intron (NM_001310070, intron 2 of 11)	intron (NM_001310070, intron 2 of 11)	39333	NM_001310070	223922	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding
chipseq_peak_5200	chr15	62511370	62511830	+	0	NA	Intergenic	Intergenic	-292149	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_3928	chr13	97554176	97555435	+	0	NA	Intergenic	Intergenic	-5195	NR_046157	328314	Mm.138047	NR_046157		Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA
chipseq_peak_12635	chr8	10722698	10723204	+	0	NA	Intergenic	Intergenic	159503	NR_040705	320014	Mm.403203	NR_040705		B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA
chipseq_peak_5210	chr15	62822883	62823254	+	0	NA	Intergenic	Intergenic	-603617	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_6349	chr17	63028494	63029722	+	0	NA	Intergenic	Intergenic	-147791	NM_207654	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_3520	chr13	29738019	29738432	+	0	NA	intron (NR_131896, intron 5 of 16)	intron (NR_131896, intron 5 of 16)	117448	NM_144536	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
chipseq_peak_5379	chr15	91054370	91054812	+	0	NA	Intergenic	Intergenic	-4640	NM_001109040	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding
chipseq_peak_11475	chr6	49633194	49633722	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-189252	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding
chipseq_peak_9836	chr4	59380551	59381312	+	0	NA	exon (NM_001163288, exon 7 of 17)	exon (NM_001163288, exon 7 of 17)	57702	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding
chipseq_peak_8262	chr2	141472344	141473369	+	0	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-801380	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_12625	chr8	10234357	10234859	+	0	NA	intron (NM_001081397, intron 1 of 35)	intron (NM_001081397, intron 1 of 35)	80685	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
chipseq_peak_7928	chr2	78655137	78657184	+	0	NA	Intergenic	Intergenic	-212887	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chipseq_peak_11620	chr6	79335051	79335525	+	0	NA	Intergenic	L1M4|LINE|L1	303246	NR_040302	100504701	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA
chipseq_peak_4966	chr15	32240165	32240463	+	0	NA	TTS (NR_038186)	TTS (NR_038186)	1618	NR_028575	66835		NR_028575	ENSMUSG00000089317	Snord123	-	small nucleolar RNA, C/D box 123	snoRNA
chipseq_peak_84	chr1	21597239	21598052	+	0	NA	intron (NM_001310477, intron 1 of 12)	intron (NM_001310477, intron 1 of 12)	214089	NM_001113187	98582	Mm.326336	NM_001113187	ENSMUSG00000085079	Khdc1b	AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c	KH domain containing 1B	protein-coding
chipseq_peak_11807	chr6	106497025	106497493	+	0	NA	intron (NM_173004, intron 9 of 19)	intron (NM_173004, intron 9 of 19)	251778	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding
chipseq_peak_4209	chr14	27338063	27338434	+	0	NA	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	2211	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding
chipseq_peak_29	chr1	10449748	10450005	+	0	NA	intron (NM_177834, intron 6 of 10)	L1MB7|LINE|L1	-217206	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding
chipseq_peak_9946	chr4	78999685	79000197	+	0	NA	Intergenic	Intergenic	405894	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_12677	chr8	18270339	18270692	+	0	NA	Intergenic	Intergenic	-324658	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding
chipseq_peak_13539	chr9	50889652	50890155	+	0	NA	intron (NM_001286553, intron 15 of 16)	intron (NM_001286553, intron 15 of 16)	32979	NM_001034085	73699	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding
chipseq_peak_2408	chr11	69123278	69125407	+	0	NA	Intergenic	Intergenic	-2035	NM_011786	23801	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding
chipseq_peak_5369	chr15	87827908	87828243	+	0	NA	Intergenic	L1MB2|LINE|L1	-32132	NR_105817	102465209		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA
chipseq_peak_7006	chr18	73165969	73166234	+	0	NA	Intergenic	Intergenic	-406604	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 homolog C (C. elegans)	protein-coding
chipseq_peak_9784	chr4	49834651	49835035	+	0	NA	intron (NM_001033351, intron 1 of 8)	MLT1D|LTR|ERVL-MaLR	10926	NM_001276355	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding
chipseq_peak_10002	chr4	86014917	86015668	+	0	NA	Intergenic	Intergenic	-38623	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding
chipseq_peak_59	chr1	18148057	18148850	+	0	NA	Intergenic	Intergenic	-11402	NM_030033	78081	Mm.319913	NM_030033	ENSMUSG00000025774	Crisp4	9230112K08Rik	cysteine-rich secretory protein 4	protein-coding
chipseq_peak_5783	chr16	54406615	54407064	+	0	NA	Intergenic	Intergenic	876398	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
chipseq_peak_1420	chr10	30383703	30384046	+	0	NA	Intergenic	Intergenic	-183334	NM_001109747	66311	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding
chipseq_peak_13528	chr9	49570427	49570925	+	0	NA	intron (NM_001113204, intron 1 of 18)	intron (NM_001113204, intron 1 of 18)	52388	NR_029465	100036537	Mm.437541	NR_029465		Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA
chipseq_peak_8046	chr2	105284791	105285292	+	0	NA	intron (NM_028747, intron 2 of 3)	intron (NM_028747, intron 2 of 3)	60699	NM_028747	74088	Mm.46188	NM_028747	ENSMUSG00000055312	Them7	0610012H03Rik	thioesterase superfamily member 7	protein-coding
chipseq_peak_5482	chr16	6310783	6312152	+	0	NA	intron (NM_021477, intron 2 of 16)	intron (NM_021477, intron 2 of 16)	335880	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA
chipseq_peak_1380	chr10	27150312	27150650	+	0	NA	intron (NM_008481, intron 32 of 63)	intron (NM_008481, intron 32 of 63)	-239385	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_3516	chr13	29550127	29551299	+	0	NA	intron (NR_131896, intron 10 of 16)	B3A|SINE|B2	304960	NM_144536	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
chipseq_peak_11418	chr6	41630522	41631959	+	0	NA	intron (NM_022413, intron 1 of 14)	intron (NM_022413, intron 1 of 14)	5165	NM_022413	64177	Mm.296889	NM_022413	ENSMUSG00000029868	Trpv6	CAT|CaT1|Cac|Ecac2|Otrpc3	transient receptor potential cation channel, subfamily V, member 6	protein-coding
chipseq_peak_13222	chr8	118147562	118148353	+	0	NA	Intergenic	Intergenic	-135654	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding
chipseq_peak_6594	chr18	14728198	14728526	+	0	NA	intron (NM_001163609, intron 3 of 6)	intron (NM_001163609, intron 3 of 6)	22211	NM_001163609	73677	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding
chipseq_peak_9465	chr4	6795575	6796363	+	0	NA	intron (NM_145711, intron 3 of 8)	intron (NM_145711, intron 3 of 8)	194754	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_13495	chr9	42544281	42545038	+	0	NA	intron (NM_175481, intron 16 of 20)	intron (NM_175481, intron 16 of 20)	-72433	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding
chipseq_peak_6177	chr17	9328832	9329562	+	0	NA	Intergenic	L1MEd|LINE|L1	-161175	NR_027881	67791	Mm.158175	NR_027881	ENSMUSG00000097049	6530411M01Rik	-	RIKEN cDNA 6530411M01 gene	ncRNA
chipseq_peak_12412	chr7	100558473	100558801	+	0	NA	intron (NM_198831, intron 5 of 7)	L1MB3|LINE|L1	21537	NM_183270	68185	Mm.228995	NM_183270		Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding
chipseq_peak_2917	chr12	44418840	44419613	+	0	NA	intron (NM_176930, intron 2 of 30)	L1ME2|LINE|L1	90341	NM_176930	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding
chipseq_peak_8139	chr2	121716752	121717595	+	0	NA	intron (NM_172673, intron 1 of 14)	intron (NM_172673, intron 1 of 14)	89884	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding
chipseq_peak_13379	chr9	27508972	27509734	+	0	NA	Intergenic	Intergenic	112141	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding
chipseq_peak_13327	chr9	16036075	16036820	+	0	NA	intron (NM_001080814, intron 3 of 24)	MIR|SINE|MIR	-161891	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
chipseq_peak_7932	chr2	78959313	78959955	+	0	NA	Intergenic	Intergenic	90587	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chipseq_peak_1798	chr10	92888416	92888740	+	0	NA	Intergenic	Intergenic	-166160	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding
chipseq_peak_5947	chr16	72994378	72996099	+	0	NA	intron (NM_019413, intron 19 of 28)	intron (NM_019413, intron 19 of 28)	332089	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_3074	chr12	65414229	65414727	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	188961	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding
chipseq_peak_2566	chr11	108259078	108259506	+	0	NA	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	84596	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding
chipseq_peak_11968	chr6	142669271	142669719	+	0	NA	intron (NM_001310143, intron 14 of 38)	intron (NM_001310143, intron 14 of 38)	32779	NM_001310143	20928	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding
chipseq_peak_5653	chr16	41524205	41525003	+	0	NA	Intergenic	Intergenic	-8738	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_11846	chr6	110981988	110982848	+	0	NA	intron (NM_177328, intron 2 of 9)	intron (NM_177328, intron 2 of 9)	336820	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_7378	chr2	6705617	6706981	+	0	NA	intron (NM_001310447, intron 1 of 11)	intron (NM_001310447, intron 1 of 11)	15363	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_13194	chr8	112569051	112570162	+	0	NA	promoter-TSS (NM_130457)	promoter-TSS (NM_130457)	-31	NR_132433	102640845	Mm.405615	NR_132433	ENSMUSG00000098075	Gm26994	-	predicted gene, 26994	ncRNA
chipseq_peak_3917	chr13	96423221	96423852	+	0	NA	intron (NM_001042714, intron 11 of 13)	intron (NM_001042714, intron 11 of 13)	35242	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein homolog (Chlamydomonas)	protein-coding
chipseq_peak_6605	chr18	17390742	17391452	+	0	NA	Intergenic	Intergenic	-155615	NR_033607	664619	Mm.250005	NR_033607		4921533I20Rik	-	PRP18 pre-mRNA processing factor 18 homolog pseudogene	pseudo
chipseq_peak_6356	chr17	63421203	63421629	+	0	NA	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	79164	NM_015794	50758	Mm.136366	NM_015794		Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
chipseq_peak_1149	chr1	181980223	181980875	+	0	NA	intron (NM_001083121, intron 1 of 13)	intron (NM_001083121, intron 1 of 13)	39431	NM_001083120	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding
chipseq_peak_6821	chr18	51355073	51355693	+	0	NA	Intergenic	Intergenic	237485	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding
chipseq_peak_6080	chr16	85330042	85330900	+	0	NA	Intergenic	Intergenic	-156764	NM_001198823	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding
chipseq_peak_9351	chr3	148976003	148978761	+	0	NA	Intergenic	Intergenic	-22747	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
chipseq_peak_2017	chr10	116404950	116405472	+	0	NA	Intergenic	MIRb|SINE|MIR	-12910	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA
chipseq_peak_13186	chr8	110697284	110698539	+	0	NA	intron (NM_146216, intron 14 of 18)	intron (NM_146216, intron 14 of 18)	-23565	NM_198625	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding
chipseq_peak_6902	chr18	59077842	59078277	+	0	NA	Intergenic	Intergenic	15678	NR_033765	225583	Mm.209711	NM_173759	ENSMUSG00000050875	A730017C20Rik	-	RIKEN cDNA A730017C20 gene	protein-coding
chipseq_peak_4104	chr13	116795841	116796448	+	0	NA	Intergenic	Intergenic	229372	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding
chipseq_peak_2388	chr11	67596165	67596592	+	0	NA	promoter-TSS (NM_001277080)	promoter-TSS (NM_001277080)	-177	NM_001277080	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding
chipseq_peak_7426	chr2	8067847	8068487	+	0	NA	Intergenic	Intergenic	-671969	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_9081	chr3	111380291	111381258	+	0	NA	Intergenic	Intergenic	-501129	NR_045362	625585	Mm.389497	NR_045362	ENSMUSG00000104543	Gm6602	-	predicted gene 6602	ncRNA
chipseq_peak_5931	chr16	72483320	72485357	+	0	NA	Intergenic	Intergenic	-178811	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_1583	chr10	54551546	54552196	+	0	NA	Intergenic	Intergenic	475949	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA
chipseq_peak_13139	chr8	101844189	101845754	+	0	NA	Intergenic	Intergenic	940140	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_5753	chr16	51794929	51795521	+	0	NA	Intergenic	Intergenic	-236324	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
chipseq_peak_3179	chr12	75090984	75091430	+	0	NA	intron (NM_172805, intron 6 of 10)	intron (NM_172805, intron 6 of 10)	86125	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding
chipseq_peak_12477	chr7	118589211	118589578	+	0	NA	Intergenic	(TTA)n|Simple_repeat|Simple_repeat	-4708	NM_172476	209760	Mm.69380	NM_172476	ENSMUSG00000042246	Tmc7	1700030H01Rik|C230064B05|C630024K23Rik	transmembrane channel-like gene family 7	protein-coding
chipseq_peak_2611	chr11	113781984	113782310	+	0	NA	intron (NM_172800, intron 44 of 44)	intron (NM_172800, intron 44 of 44)	-30332	NM_001163346	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
chipseq_peak_3725	chr13	77528969	77530493	+	0	NA	intron (NM_001145676, intron 19 of 19)	intron (NM_001145676, intron 19 of 19)	-178959	NM_001163419	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding
chipseq_peak_4534	chr14	91582199	91582863	+	0	NA	Intergenic	Intergenic	1455640	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
chipseq_peak_4811	chr15	13282410	13286121	+	0	NA	Intergenic	Intergenic	-110590	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_9924	chr4	77259241	77260109	+	0	NA	intron (NM_011211, intron 6 of 39)	intron (NM_011211, intron 6 of 39)	952220	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_4952	chr15	30035343	30035909	+	0	NA	Intergenic	Intergenic	-136967	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding
chipseq_peak_3937	chr13	98240229	98240561	+	0	NA	Intergenic	Intergenic	22597	NM_178918	105372	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)	protein-coding
chipseq_peak_8016	chr2	98683914	98684753	+	0	NA	Intergenic	Intergenic	1216676	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_10757	chr5	84751623	84752715	+	0	NA	Intergenic	Intergenic	-334787	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_10347	chr5	20584637	20585205	+	0	NA	intron (NM_001170745, intron 14 of 20)	intron (NM_001170745, intron 14 of 20)	297203	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding
chipseq_peak_2978	chr12	51117115	51118737	+	0	NA	Intergenic	Intergenic	112770	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
chipseq_peak_6035	chr16	77648308	77649478	+	0	NA	Intergenic	Intergenic	2620	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_531	chr1	76155687	76156878	+	0	NA	Intergenic	UCON11|Unknown|Unknown	-332851	NR_038013	620079	Mm.378379	NR_038012	ENSMUSG00000100553	Gm17751	-	predicted gene, 17751	ncRNA
chipseq_peak_11213	chr6	14190680	14192492	+	0	NA	Intergenic	Intergenic	320017	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
chipseq_peak_3395	chr13	6188267	6190042	+	0	NA	Intergenic	Intergenic	327665	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding
chipseq_peak_6581	chr18	12236383	12237345	+	0	NA	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-478	NM_008720	18145	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	Niemann-Pick type C1	protein-coding
chipseq_peak_7204	chr19	29372063	29372586	+	0	NA	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	4886	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding
chipseq_peak_6593	chr18	14232849	14233141	+	0	NA	intron (NR_045373, intron 1 of 3)	intron (NR_045373, intron 1 of 3)	689	NR_045373	74529	Mm.400519	NR_045373		8430422H06Rik	-	RIKEN cDNA 8430422H06 gene	ncRNA
chipseq_peak_3226	chr12	82457848	82458335	+	0	NA	Intergenic	Intergenic	146742	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding
chipseq_peak_721	chr1	114598420	114599208	+	0	NA	Intergenic	Intergenic	-1086323	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_8969	chr3	82289564	82290295	+	0	NA	Intergenic	Intergenic	-68143	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding
chipseq_peak_11958	chr6	139868492	139868780	+	0	NA	intron (NM_207683, intron 15 of 23)	L1MD1|LINE|L1	27191	NM_011084	18705	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	protein-coding
chipseq_peak_7881	chr2	71019595	71020989	+	0	NA	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	-1918	NM_001110512	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding
chipseq_peak_4972	chr15	32613820	32614146	+	0	NA	intron (NM_009154, intron 12 of 22)	intron (NM_009154, intron 12 of 22)	-306740	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding
chipseq_peak_11047	chr5	133264953	133265558	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-722912	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
chipseq_peak_7498	chr2	20523295	20523946	+	0	NA	intron (NM_178059, intron 2 of 18)	RCHARR1|DNA|hAT-Charlie	4107	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
chipseq_peak_6170	chr17	5629592	5630231	+	0	NA	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	137311	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding
chipseq_peak_13931	chr9	114913336	114913595	+	0	NA	intron (NM_175380, intron 4 of 7)	intron (NM_175380, intron 4 of 7)	20522	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding
chipseq_peak_6445	chr17	77963430	77963916	+	0	NA	Intergenic	Intergenic	-236575	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
chipseq_peak_13080	chr8	91282459	91283187	+	0	NA	intron (NM_173431, intron 9 of 25)	intron (NM_173431, intron 9 of 25)	30399	NM_173431	244585	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding
chipseq_peak_12242	chr7	76361178	76362371	+	0	NA	intron (NM_001199224, intron 5 of 22)	intron (NM_001199224, intron 5 of 22)	131887	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_7310	chr19	56604882	56605169	+	0	NA	Intergenic	Intergenic	56764	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding
chipseq_peak_13781	chr9	96320589	96321287	+	0	NA	3' UTR (NM_001184708, exon 10 of 10)	3' UTR (NM_001184708, exon 10 of 10)	43361	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding
chipseq_peak_13644	chr9	63135955	63136327	+	0	NA	Intergenic	Intergenic	10839	NM_172446	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding
chipseq_peak_465	chr1	67143969	67144294	+	0	NA	intron (NM_001080809, intron 4 of 37)	intron (NM_001080809, intron 4 of 37)	21104	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding
chipseq_peak_10031	chr4	89776273	89776779	+	0	NA	Intergenic	Intergenic	88328	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding
chipseq_peak_7202	chr19	28807247	28808325	+	0	NA	Intergenic	Intergenic	-27380	NM_009199	20510	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding
chipseq_peak_6802	chr18	47593766	47594026	+	0	NA	intron (NR_033454, intron 1 of 5)	intron (NR_033454, intron 1 of 5)	56161	NR_033454	328953	Mm.246768	NR_033454		Gm5095	A730092B10	predicted gene 5095	ncRNA
chipseq_peak_6104	chr16	90328122	90328486	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	-43879	NM_178923	224432	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding
chipseq_peak_7704	chr2	52720689	52721095	+	0	NA	exon (NM_019667, exon 2 of 14)	exon (NM_019667, exon 2 of 14)	21257	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding
chipseq_peak_3649	chr13	57642892	57643586	+	0	NA	intron (NM_001166464, intron 4 of 10)	intron (NM_001166464, intron 4 of 10)	265093	NM_001166464	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding
chipseq_peak_6988	chr18	69994491	69995692	+	0	NA	intron (NM_001302799, intron 2 of 5)	intron (NM_001302799, intron 2 of 5)	58497	NM_030554	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding
chipseq_peak_2928	chr12	47599108	47599620	+	0	NA	Intergenic	L3|LINE|CR1	702098	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA
chipseq_peak_12786	chr8	42690290	42690742	+	0	NA	Intergenic	Intergenic	450970	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding
chipseq_peak_12404	chr7	97872393	97872840	+	0	NA	intron (NM_011035, intron 5 of 14)	intron (NM_011035, intron 5 of 14)	29677	NM_011035	18479	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
chipseq_peak_12873	chr8	54828390	54830702	+	0	NA	intron (NM_001253754, intron 1 of 6)	intron (NM_001253754, intron 1 of 6)	50112	NM_001253754	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_5088	chr15	47869092	47869434	+	0	NA	intron (NM_001081391, intron 27 of 70)	intron (NM_001081391, intron 27 of 70)	922726	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
chipseq_peak_12931	chr8	60631456	60632919	+	0	NA	promoter-TSS (NM_027756)	promoter-TSS (NM_027756)	-638	NM_027756	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding
chipseq_peak_9306	chr3	142151333	142152292	+	0	NA	intron (NM_001277216, intron 1 of 11)	intron (NM_001277216, intron 1 of 11)	17416	NM_001277217	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding
chipseq_peak_5293	chr15	70339279	70339711	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	415262	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_1081	chr1	176935490	176936621	+	0	NA	intron (NM_029756, intron 13 of 17)	intron (NM_029756, intron 13 of 17)	-99922	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_11242	chr6	18445839	18447531	+	0	NA	intron (NM_080285, intron 3 of 22)	intron (NM_080285, intron 3 of 22)	68140	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_10855	chr5	102757214	102757845	+	0	NA	intron (NM_029270, intron 3 of 9)	(TG)n|Simple_repeat|Simple_repeat	-11281	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
chipseq_peak_823	chr1	136714161	136714655	+	0	NA	intron (NR_037986, intron 2 of 4)	intron (NR_037986, intron 2 of 4)	18197	NR_037986	100503474	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA
chipseq_peak_10857	chr5	103022984	103023314	+	0	NA	intron (NM_001310683, intron 4 of 13)	intron (NM_001310683, intron 4 of 13)	35161	NM_001310686	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
chipseq_peak_11013	chr5	131134605	131135397	+	0	NA	intron (NM_145218, intron 2 of 10)	intron (NM_145218, intron 2 of 10)	172521	NM_145218	212996	Mm.299204	NM_145218		Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding
chipseq_peak_4262	chr14	38122385	38123555	+	0	NA	Intergenic	Intergenic	-775332	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
chipseq_peak_8781	chr3	60305106	60306127	+	0	NA	Intergenic	Intergenic	-167214	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding
chipseq_peak_6084	chr16	85895936	85896281	+	0	NA	intron (NM_011782, intron 1 of 7)	intron (NM_011782, intron 1 of 7)	5017	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding
chipseq_peak_4593	chr14	101838203	101838608	+	0	NA	intron (NM_201529, intron 3 of 30)	intron (NM_201529, intron 3 of 30)	108477	NM_201529	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding
chipseq_peak_7453	chr2	10788456	10789207	+	0	NA	Intergenic	UCON29|DNA|PiggyBac?	271227	NR_035417	100316668		NR_035417	ENSMUSG00000080657	Mir669i	Mirn669i|mir-669i|mmu-mir-669i	microRNA 669i	ncRNA
chipseq_peak_1226	chr1	194929854	194930290	+	0	NA	Intergenic	Intergenic	-8749	NM_133654	12490	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding
chipseq_peak_9868	chr4	70058662	70059698	+	0	NA	Intergenic	Intergenic	351255	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding
chipseq_peak_13370	chr9	26649012	26649391	+	0	NA	Intergenic	L1MA4|LINE|L1	-84607	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding
chipseq_peak_7831	chr2	65413374	65414071	+	0	NA	Intergenic	Intergenic	-49322	NR_105755	102466151		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA
chipseq_peak_8493	chr3	18668640	18672761	+	0	NA	Intergenic	Intergenic	-190223	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
chipseq_peak_12370	chr7	93671745	93673726	+	0	NA	Intergenic	ID_B1|SINE|B4	592856	NM_021427	58238	Mm.113787	NM_021427		Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding
chipseq_peak_8584	chr3	32641574	32642808	+	0	NA	Intergenic	Intergenic	-25656	NM_013531	14696	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding
chipseq_peak_6677	chr18	26227582	26228370	+	0	NA	Intergenic	Intergenic	-473993	NM_001146294	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
chipseq_peak_2363	chr11	57506916	57507274	+	0	NA	intron (NM_001168667, intron 6 of 13)	intron (NM_001168667, intron 6 of 13)	11549	NM_001168668	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding
chipseq_peak_8941	chr3	80725239	80726206	+	0	NA	intron (NM_001039195, intron 5 of 12)	intron (NM_001039195, intron 5 of 12)	77069	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_6628	chr18	20105634	20105943	+	0	NA	intron (NM_013504, intron 5 of 16)	intron (NM_013504, intron 5 of 16)	8985	NM_001291804	13505	Mm.33740	NM_013504		Dsc1	1110020A10Rik|AI507491|Dsc1a|Dsc1b	desmocollin 1	protein-coding
chipseq_peak_8443	chr3	9203812	9204495	+	0	NA	Intergenic	Intergenic	-46414	NM_177660	229055	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding
chipseq_peak_11801	chr6	106185100	106185813	+	0	NA	intron (NM_173004, intron 5 of 19)	MIR3|SINE|MIR	66691	NM_001109751	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding
chipseq_peak_121	chr1	24904566	24905370	+	0	NA	Intergenic	Intergenic	226050	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding
chipseq_peak_5313	chr15	72603500	72603871	+	0	NA	intron (NM_180662, intron 20 of 21)	intron (NM_180662, intron 20 of 21)	-57406	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding
chipseq_peak_1093	chr1	177038685	177040327	+	0	NA	intron (NM_011785, intron 11 of 12)	intron (NM_011785, intron 11 of 12)	-203373	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_7492	chr2	18994350	18995388	+	0	NA	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	3252	NM_008845	18718	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding
chipseq_peak_7393	chr2	7178223	7179808	+	0	NA	intron (NM_001110231, intron 3 of 15)	intron (NM_001110231, intron 3 of 15)	-97713	NM_001110230	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_11132	chr6	4577753	4578224	+	0	NA	Intergenic	Intergenic	-23078	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1	CAS1 domain containing 1	protein-coding
chipseq_peak_1252	chr10	9480336	9481004	+	0	NA	Intergenic	Intergenic	194538	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
chipseq_peak_10959	chr5	120612292	120613827	+	0	NA	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-71	NM_028041	71990	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding
chipseq_peak_11123	chr5	149503495	149504146	+	0	NA	intron (NR_045423, intron 1 of 4)	intron (NR_045423, intron 1 of 4)	-24859	NM_029440	381693	Mm.136919	NM_029440	ENSMUSG00000029658	Wdr95	4930434E21Rik	WD40 repeat domain 95	protein-coding
chipseq_peak_11995	chr6	144543296	144543639	+	0	NA	Intergenic	Intergenic	-129401	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA
chipseq_peak_7605	chr2	43819658	43821120	+	0	NA	intron (NM_001301832, intron 2 of 14)	intron (NM_001301832, intron 2 of 14)	71565	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_5010	chr15	39409197	39410822	+	0	NA	intron (NM_001256382, intron 3 of 26)	B1_Mus2|SINE|Alu	211723	NM_053271	116838	Mm.309296	NM_053271		Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding
chipseq_peak_9063	chr3	107009403	107009669	+	0	NA	Intergenic	Intergenic	-26626	NM_008418	16491	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding
chipseq_peak_9249	chr3	134189453	134190197	+	0	NA	Intergenic	Intergenic	-46670	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding
chipseq_peak_10395	chr5	35925132	35925445	+	0	NA	intron (NM_027373, intron 1 of 16)	intron (NM_027373, intron 1 of 16)	31969	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding
chipseq_peak_1198	chr1	192982980	192983302	+	0	NA	intron (NM_001301370, intron 3 of 8)	B1F1|SINE|Alu	52634	NM_001301370	329324	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding
chipseq_peak_8065	chr2	107965459	107966046	+	0	NA	Intergenic	MIRb|SINE|MIR	675163	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_8328	chr2	154583864	154584471	+	0	NA	Intergenic	Intergenic	-14275	NM_007891	13555	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|mKIAA4009	E2F transcription factor 1	protein-coding
chipseq_peak_6787	chr18	44753865	44754223	+	0	NA	intron (NM_001085373, intron 2 of 18)	intron (NM_001085373, intron 2 of 18)	58138	NM_001085373	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding
chipseq_peak_1634	chr10	65318196	65318460	+	0	NA	Intergenic	L1MA6|LINE|L1	805736	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA
chipseq_peak_2736	chr12	17548643	17548974	+	0	NA	exon (NM_013614, exon 8 of 12)	exon (NM_013614, exon 8 of 12)	3935	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding
chipseq_peak_2312	chr11	41975330	41975829	+	0	NA	intron (NM_177408, intron 2 of 8)	intron (NM_177408, intron 2 of 8)	25135	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding
chipseq_peak_1080	chr1	176928588	176934610	+	0	NA	intron (NM_029756, intron 13 of 17)	intron (NM_029756, intron 13 of 17)	-95466	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_10931	chr5	115085575	115086275	+	0	NA	intron (NM_029012, intron 6 of 10)	RCHARR1|DNA|hAT-Charlie	22037	NM_001271591	100502825	Mm.361657	NM_001271590		Rpl37rt	Gm13826|OTTMUSG00000014624	ribosomal protein L37, retrotransposed	protein-coding
chipseq_peak_12941	chr8	62575733	62576347	+	0	NA	Intergenic	Intergenic	-375192	NM_001252621	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding
chipseq_peak_12919	chr8	58997962	58998522	+	0	NA	Intergenic	Intergenic	86487	NM_173411	234290	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding
chipseq_peak_5274	chr15	68160953	68161325	+	0	NA	intron (NM_001145888, intron 10 of 15)	intron (NM_001145888, intron 10 of 15)	97717	NM_198644	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
chipseq_peak_2943	chr12	49801557	49801991	+	0	NA	Intergenic	L1_Rod|LINE|L1	-320912	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_3059	chr12	62768205	62769248	+	0	NA	Intergenic	Intergenic	80939	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA
chipseq_peak_13845	chr9	105348505	105349570	+	0	NA	intron (NM_172461, intron 2 of 15)	intron (NM_172461, intron 2 of 15)	46250	NM_172461	208583	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding
chipseq_peak_7153	chr19	23645454	23645862	+	0	NA	intron (NM_026188, intron 1 of 5)	intron (NM_026188, intron 1 of 5)	7154	NM_026188	67483	Mm.443287	NM_026188	ENSMUSG00000033053	1700028P14Rik	AV209940	RIKEN cDNA 1700028P14 gene	protein-coding
chipseq_peak_427	chr1	59987557	59987922	+	0	NA	Intergenic	Intergenic	55383	NM_001316694	70375	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15	islet cell autoantigen 1-like	protein-coding
chipseq_peak_771	chr1	126801490	126802110	+	0	NA	intron (NM_176957, intron 1 of 12)	intron (NM_176957, intron 1 of 12)	28832	NM_176957	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding
chipseq_peak_7108	chr19	19305828	19307164	+	0	NA	Intergenic	Intergenic	-195300	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
chipseq_peak_676	chr1	104479450	104480175	+	0	NA	Intergenic	Intergenic	-289007	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_10124	chr4	107717769	107718975	+	0	NA	Intergenic	Intergenic	-34210	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding
chipseq_peak_2173	chr11	21016450	21017368	+	0	NA	Intergenic	Intergenic	-74415	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding
chipseq_peak_6916	chr18	64769529	64770301	+	0	NA	Intergenic	Intergenic	-108915	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding
chipseq_peak_9735	chr4	37545211	37546504	+	0	NA	Intergenic	Lx2A|LINE|L1	-594113	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_7885	chr2	72136054	72136374	+	0	NA	intron (NM_001204166, intron 1 of 27)	intron (NM_001204166, intron 1 of 27)	81597	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding
chipseq_peak_12379	chr7	94861548	94862110	+	0	NA	Intergenic	Intergenic	-1309415	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
chipseq_peak_9245	chr3	133965338	133965997	+	0	NA	Intergenic	Intergenic	-270828	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding
chipseq_peak_6171	chr17	6003924	6004595	+	0	NA	intron (NM_001113351, intron 5 of 24)	L1ME4a|LINE|L1	-3321	NM_001290698	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding
chipseq_peak_13143	chr8	102046389	102046807	+	0	NA	Intergenic	Intergenic	738513	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_13326	chr9	16028776	16029594	+	0	NA	intron (NM_001080814, intron 5 of 24)	intron (NM_001080814, intron 5 of 24)	-154629	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
chipseq_peak_9565	chr4	17927864	17928279	+	0	NA	intron (NM_019724, intron 1 of 9)	intron (NM_019724, intron 1 of 9)	74589	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_6946	chr18	67162467	67164719	+	0	NA	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	30033	NM_010307	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding
chipseq_peak_6585	chr18	12910308	12910975	+	0	NA	intron (NM_207530, intron 6 of 27)	intron (NM_207530, intron 6 of 27)	-30662	NM_001252489	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding
chipseq_peak_11010	chr5	130709300	130709703	+	0	NA	intron (NM_021371, intron 4 of 5)	intron (NM_021371, intron 4 of 5)	260709	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding
chipseq_peak_6524	chr17	90584523	90585269	+	0	NA	intron (NM_020252, intron 15 of 22)	intron (NM_020252, intron 15 of 22)	-276273	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_4661	chr14	111878047	111878467	+	0	NA	Intergenic	Intergenic	-143173	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
chipseq_peak_4259	chr14	37716020	37716886	+	0	NA	Intergenic	Intergenic	-581131	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
chipseq_peak_3839	chr13	85309945	85311426	+	0	NA	Intergenic	Intergenic	-21199	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding
chipseq_peak_9990	chr4	84282604	84283146	+	0	NA	intron (NM_172870, intron 5 of 5)	intron (NM_172870, intron 5 of 5)	-237996	NR_130998	78238	Mm.243903	NR_130998		6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA
chipseq_peak_8920	chr3	79887125	79887565	+	0	NA	intron (NM_133187, intron 1 of 3)	intron (NM_133187, intron 1 of 3)	1415	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_1927	chr10	106259728	106260110	+	0	NA	Intergenic	Intergenic	-210391	NM_001205341	327814	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding
chipseq_peak_5926	chr16	72221795	72222828	+	0	NA	Intergenic	Intergenic	12016	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA
chipseq_peak_5415	chr15	94927934	94928660	+	0	NA	intron (NM_178789, intron 4 of 7)	intron (NM_178789, intron 4 of 7)	221021	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_5525	chr16	21655987	21656317	+	0	NA	intron (NM_001001881, intron 1 of 1)	L1MA6|LINE|L1	38513	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding
chipseq_peak_5315	chr15	72851111	72852611	+	0	NA	TTS (NM_001164642)	TTS (NM_001164642)	-41537	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA
chipseq_peak_11912	chr6	128803113	128803732	+	0	NA	Intergenic	Intergenic	-14781	NM_008527	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding
chipseq_peak_14105	chrX	157829944	157830717	+	0	NA	intron (NM_001310719, intron 19 of 20)	intron (NM_001310719, intron 19 of 20)	11895	NM_001081667	245683	Mm.295846	NM_001081667		Klhl34	Gm388	kelch-like 34	protein-coding
chipseq_peak_1750	chr10	86774000	86774461	+	0	NA	intron (NM_001003910, intron 14 of 15)	RLTR22_Mus|LTR|ERVK	-4775	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding
chipseq_peak_11334	chr6	32873581	32875842	+	0	NA	intron (NM_025336, intron 5 of 7)	intron (NM_025336, intron 5 of 7)	185441	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
chipseq_peak_8259	chr2	141388599	141389004	+	0	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-717325	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_7636	chr2	44512417	44513612	+	0	NA	Intergenic	Intergenic	348608	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_12720	chr8	32663348	32663777	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	286464	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding
chipseq_peak_2331	chr11	44977894	44978256	+	0	NA	intron (NM_001290709, intron 11 of 15)	intron (NM_001290709, intron 11 of 15)	138853	NR_045100	100504255	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	OTTMUSG00000005475	predicted gene 12159	ncRNA
chipseq_peak_3020	chr12	58251626	58252693	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	17099	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
chipseq_peak_7977	chr2	92296461	92296919	+	0	NA	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	74367	NM_001290774	228366	Mm.31158	NM_172670	ENSMUSG00000040434	Gyltl1b	5730485C17Rik|AI891893|Large2|Largel|mKIAA4105	glycosyltransferase-like 1B	protein-coding
chipseq_peak_96	chr1	22183136	22183948	+	0	NA	Intergenic	Intergenic	-220892	NM_001310477	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding
chipseq_peak_13307	chr9	10789771	10790993	+	0	NA	intron (NM_001170787, intron 1 of 24)	intron (NM_001170787, intron 1 of 24)	114344	NM_001033359	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding
chipseq_peak_1097	chr1	177074186	177075389	+	0	NA	intron (NM_011785, intron 7 of 12)	intron (NM_011785, intron 7 of 12)	173980	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_12975	chr8	67714121	67715426	+	0	NA	intron (NM_177698, intron 13 of 14)	intron (NM_177698, intron 13 of 14)	103522	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding
chipseq_peak_7481	chr2	15739054	15739401	+	0	NA	intron (NM_001310455, intron 17 of 38)	intron (NM_001310455, intron 17 of 38)	212748	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding
chipseq_peak_12885	chr8	54991017	54993213	+	0	NA	intron (NM_001253756, intron 1 of 5)	intron (NM_001253756, intron 1 of 5)	37387	NM_153581	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_11395	chr6	37590233	37590860	+	0	NA	Intergenic	Intergenic	60373	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding
chipseq_peak_11441	chr6	44295991	44296499	+	0	NA	Intergenic	L1MA8|LINE|L1	-629967	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
chipseq_peak_7673	chr2	48123720	48124057	+	0	NA	Intergenic	Intergenic	-690221	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_12828	chr8	48511124	48511891	+	0	NA	intron (NM_011857, intron 2 of 28)	intron (NM_011857, intron 2 of 28)	163183	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_2416	chr11	72121742	72122106	+	0	NA	intron (NM_001024927, intron 1 of 19)	intron (NM_001024927, intron 1 of 19)	13965	NM_001081641	327958	Mm.351793	NM_001024927	ENSMUSG00000040543	Pitpnm3	A330068P14Rik|AI848332|Ackr6|Gm880	PITPNM family member 3	protein-coding
chipseq_peak_1169	chr1	187834391	187835091	+	0	NA	intron (NM_001243792, intron 2 of 7)	intron (NM_001243792, intron 2 of 7)	-163086	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding
chipseq_peak_10410	chr5	39373237	39373491	+	0	NA	Intergenic	Intergenic	230210	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA
chipseq_peak_10863	chr5	103497144	103497875	+	0	NA	intron (NM_011204, intron 6 of 47)	intron (NM_011204, intron 6 of 47)	72317	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding
chipseq_peak_1954	chr10	108773288	108773820	+	0	NA	intron (NM_001252342, intron 3 of 10)	intron (NM_001252342, intron 3 of 10)	-73394	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding
chipseq_peak_3546	chr13	40074859	40075776	+	0	NA	intron (NM_172143, intron 15 of 18)	intron (NM_172143, intron 15 of 18)	212694	NM_172143	218165	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding
chipseq_peak_12121	chr7	54482807	54483196	+	0	NA	Intergenic	Intergenic	-352244	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_1576	chr10	53673676	53674836	+	0	NA	intron (NM_001081428, intron 9 of 17)	intron (NM_001081428, intron 9 of 17)	-43817	NM_027830	71567	Mm.278221	NM_027830		Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance complex component 9	protein-coding
chipseq_peak_2929	chr12	47670425	47670967	+	0	NA	Intergenic	L1MC4|LINE|L1	630766	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA
chipseq_peak_4780	chr15	8717141	8717555	+	0	NA	Intergenic	Intergenic	-6541	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
chipseq_peak_988	chr1	162083598	162084390	+	0	NA	intron (NM_001038619, intron 16 of 20)	intron (NM_001038619, intron 16 of 20)	79025	NR_040562	72753	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA
chipseq_peak_1423	chr10	30825111	30825411	+	0	NA	Intergenic	Intergenic	17522	NM_013904	15214	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding
chipseq_peak_7114	chr19	19885975	19887170	+	0	NA	Intergenic	Intergenic	504099	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding
chipseq_peak_3787	chr13	83110618	83111814	+	0	NA	Intergenic	Intergenic	-392818	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_12270	chr7	82640560	82641618	+	0	NA	intron (NM_177894, intron 2 of 2)	intron (NM_177894, intron 2 of 2)	7439	NM_177894	330577	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stablizer of axonemal microtubules 2	protein-coding
chipseq_peak_11743	chr6	101650485	101650948	+	0	NA	Intergenic	Intergenic	-123533	NR_027989	207157	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157|ENSMUSG00000052236	predicted gene 9871	ncRNA
chipseq_peak_10775	chr5	88950391	88950937	+	0	NA	intron (NM_001197147, intron 2 of 25)	intron (NM_001197147, intron 2 of 25)	63404	NM_001197147	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding
chipseq_peak_1656	chr10	67927758	67928477	+	0	NA	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-15455	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding
chipseq_peak_9615	chr4	24216917	24220202	+	0	NA	Intergenic	Intergenic	-277903	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_10375	chr5	26945313	26945895	+	0	NA	intron (NM_001198886, intron 1 of 25)	intron (NM_001198886, intron 1 of 25)	40826	NM_001198886	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding
chipseq_peak_13467	chr9	40557901	40558422	+	0	NA	Intergenic	MIRb|SINE|MIR	-102397	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding
chipseq_peak_864	chr1	141307518	141308723	+	0	NA	Intergenic	Intergenic	-651718	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_8508	chr3	20892672	20894046	+	0	NA	Intergenic	Intergenic	-526182	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
chipseq_peak_10247	chr5	5057715	5058150	+	0	NA	intron (NM_001310448, intron 7 of 13)	intron (NM_001310448, intron 7 of 13)	208136	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding
chipseq_peak_12785	chr8	42670112	42670542	+	0	NA	Intergenic	Intergenic	471159	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding
chipseq_peak_4046	chr13	109822163	109822611	+	0	NA	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-81422	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
chipseq_peak_11167	chr6	11730585	11731841	+	0	NA	Intergenic	Intergenic	176233	NM_010886	17992	Mm.415865	NM_010886	ENSMUSG00000029632	Ndufa4	MLRQ	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	protein-coding
chipseq_peak_10030	chr4	89621338	89621628	+	0	NA	Intergenic	Intergenic	-66715	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding
chipseq_peak_8070	chr2	108044587	108045237	+	0	NA	Intergenic	Intergenic	754323	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_6334	chr17	61007160	61007496	+	0	NA	Intergenic	Intergenic	1873989	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_10948	chr5	117667428	117667899	+	0	NA	intron (NM_001312914, intron 5 of 19)	(G)n|Simple_repeat|Simple_repeat	-199176	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding
chipseq_peak_6028	chr16	77126994	77127699	+	0	NA	Intergenic	Intergenic	113277	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding
chipseq_peak_8890	chr3	76429810	76430077	+	0	NA	intron (NM_178673, intron 6 of 15)	intron (NM_178673, intron 6 of 15)	354360	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding
chipseq_peak_9873	chr4	70572903	70573537	+	0	NA	Intergenic	RLTR17|LTR|ERVK	-38292	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
chipseq_peak_13355	chr9	24282878	24283854	+	0	NA	intron (NM_175678, intron 4 of 9)	intron (NM_175678, intron 4 of 9)	185348	NM_175678	319239	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
chipseq_peak_11598	chr6	76529980	76530396	+	0	NA	Intergenic	Intergenic	-712529	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_6073	chr16	83420562	83421159	+	0	NA	Intergenic	X1_LINE|LINE|CR1	-950283	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
chipseq_peak_13285	chr9	5769499	5770451	+	0	NA	Intergenic	Intergenic	-398637	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding
chipseq_peak_6071	chr16	82997957	82998395	+	0	NA	Intergenic	Intergenic	-1372967	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
chipseq_peak_2935	chr12	49397994	49401298	+	0	NA	intron (NR_026733, intron 2 of 2)	intron (NR_026733, intron 2 of 2)	9994	NR_026733	67293	Mm.185800	NR_026733	ENSMUSG00000104861	3110039M20Rik	-	RIKEN cDNA 3110039M20 gene	ncRNA
chipseq_peak_9932	chr4	77777079	77777511	+	0	NA	intron (NM_011211, intron 2 of 39)	ORR1B1-int|LTR|ERVL-MaLR	434600	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_3194	chr12	77576667	77576969	+	0	NA	Intergenic	Intergenic	166677	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding
chipseq_peak_2550	chr11	104969394	104969727	+	0	NA	Intergenic	(TTA)n|Simple_repeat|Simple_repeat	-122659	NM_001081046	70894	Mm.87320	NM_001081046	ENSMUSG00000020690	Efcab3	4921510J17Rik	EF-hand calcium binding domain 3	protein-coding
chipseq_peak_9724	chr4	35885760	35886411	+	0	NA	intron (NM_001166000, intron 8 of 8)	intron (NM_001166000, intron 8 of 8)	-40881	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_13430	chr9	32087324	32088109	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-28420	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding
chipseq_peak_12077	chr7	44895332	44896349	+	0	NA	promoter-TSS (NM_027376)	promoter-TSS (NM_027376)	-239	NM_027376	70300	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy homolog (Drosophila)	protein-coding
chipseq_peak_6854	chr18	54600423	54600856	+	0	NA	Intergenic	Intergenic	-11105	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA
chipseq_peak_3066	chr12	64540847	64541674	+	0	NA	Intergenic	Intergenic	-66362	NM_001163271	623046	Mm.189552	NM_001163271	ENSMUSG00000043060	Fscb	EG623046	fibrous sheath CABYR binding protein	protein-coding
chipseq_peak_10861	chr5	103335634	103336537	+	0	NA	Intergenic	Intergenic	-37056	NR_040699	74624	Mm.389662	NR_040699	ENSMUSG00000104956	4930429D17Rik	-	RIKEN cDNA 4930429D17 gene	ncRNA
chipseq_peak_976	chr1	160278075	160279018	+	0	NA	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	17426	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA
chipseq_peak_6019	chr16	76685408	76686020	+	0	NA	Intergenic	Intergenic	-312665	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding
chipseq_peak_10079	chr4	102228981	102229581	+	0	NA	Intergenic	Intergenic	-25461	NM_001177983	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding
chipseq_peak_12198	chr7	71488156	71488842	+	0	NA	Intergenic	Intergenic	-421196	NR_130995	78156	Mm.243818	NR_130995		4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA
chipseq_peak_4384	chr14	68308171	68308549	+	0	NA	Intergenic	L1MA5|LINE|L1	-183356	NM_008691	18040	Mm.242832	NM_008691	ENSMUSG00000022054	Nefm	NF-M|NF160|NF165|Nef3|Nfm	neurofilament, medium polypeptide	protein-coding
chipseq_peak_7707	chr2	52774164	52774862	+	0	NA	Intergenic	Intergenic	-32364	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding
chipseq_peak_6399	chr17	69694672	69695718	+	0	NA	Intergenic	Intergenic	255869	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
chipseq_peak_12890	chr8	55056342	55056576	+	0	NA	intron (NM_001253754, intron 6 of 6)	(TTAA)n|Simple_repeat|Simple_repeat	101731	NM_153581	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_9425	chr3	156754129	156755417	+	0	NA	intron (NM_001039094, intron 1 of 6)	AT_rich|Low_complexity|Low_complexity	192979	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding
chipseq_peak_13806	chr9	100642850	100643627	+	0	NA	promoter-TSS (NM_009282)	promoter-TSS (NM_009282)	-385	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding
chipseq_peak_1513	chr10	45676700	45677127	+	0	NA	intron (NM_172473, intron 18 of 23)	intron (NM_172473, intron 18 of 23)	99084	NM_172473	209462	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding
chipseq_peak_13839	chr9	104688501	104689330	+	0	NA	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	119127	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding
chipseq_peak_11543	chr6	59407433	59407980	+	0	NA	intron (NM_183183, intron 1 of 1)	intron (NM_183183, intron 1 of 1)	18584	NM_183183	243385	Mm.138080	NM_183183		Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding
chipseq_peak_9181	chr3	122788220	122789100	+	0	NA	intron (NM_153422, intron 7 of 20)	intron (NM_153422, intron 7 of 20)	13320	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA
chipseq_peak_8888	chr3	76333953	76334432	+	0	NA	intron (NM_178673, intron 4 of 15)	intron (NM_178673, intron 4 of 15)	258609	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding
chipseq_peak_9381	chr3	151306587	151307138	+	0	NA	Intergenic	Intergenic	-131020	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_4447	chr14	79106915	79107189	+	0	NA	intron (NM_027906, intron 37 of 44)	intron (NM_027906, intron 37 of 44)	140315	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding
chipseq_peak_9981	chr4	82614119	82614471	+	0	NA	Intergenic	Intergenic	-108516	NM_008687	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding
chipseq_peak_1040	chr1	169900921	169901225	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-27866	NM_001033185	78465	Mm.291078	NM_001033185	ENSMUSG00000070532	Ccdc190	1700084C01Rik	coiled-coil domain containing 190	protein-coding
chipseq_peak_8354	chr2	160854394	160855347	+	0	NA	intron (NM_177263, intron 1 of 3)	L2a|LINE|L2	18120	NM_177263	320799	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding
chipseq_peak_8978	chr3	84252355	84253169	+	0	NA	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	7017	NM_001271727	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding
chipseq_peak_6987	chr18	69898741	69899316	+	0	NA	Intergenic	Intergenic	-26531	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding
chipseq_peak_3653	chr13	57937659	57938814	+	0	NA	Intergenic	Intergenic	-29904	NM_009262	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding
chipseq_peak_2078	chr10	124825072	124825668	+	0	NA	Intergenic	Intergenic	356296	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo
chipseq_peak_12653	chr8	16057447	16058231	+	0	NA	intron (NM_053171, intron 37 of 69)	intron (NM_053171, intron 37 of 69)	110999	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_10829	chr5	98166101	98166652	+	0	NA	Intergenic	Intergenic	-14493	NM_029947	77630	Mm.332511	NM_029947		Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding
chipseq_peak_356	chr1	55559514	55560272	+	0	NA	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	153947	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding
chipseq_peak_9361	chr3	149792226	149792594	+	0	NA	Intergenic	Intergenic	517673	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_662	chr1	100842791	100843603	+	0	NA	Intergenic	Intergenic	-312571	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
chipseq_peak_15	chr1	7505897	7506225	+	0	NA	Intergenic	MYSERV-int|LTR|ERVK	417141	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
chipseq_peak_6813	chr18	50400243	50400830	+	0	NA	Intergenic	Intergenic	122167	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding
chipseq_peak_2345	chr11	48859007	48859416	+	0	NA	Intergenic	Intergenic	12135	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding
chipseq_peak_4850	chr15	18685088	18685923	+	0	NA	Intergenic	Intergenic	-133442	NM_001316758	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_3668	chr13	59279112	59279373	+	0	NA	Intergenic	Intergenic	265209	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding
chipseq_peak_13047	chr8	86058895	86060587	+	0	NA	3' UTR (NM_199446, exon 32 of 32)	3' UTR (NM_199446, exon 32 of 32)	218739	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding
chipseq_peak_1163	chr1	187137526	187138614	+	0	NA	intron (NM_029067, intron 6 of 6)	intron (NM_029067, intron 6 of 6)	12932	NR_040554	69308	Mm.490882	NR_040554	ENSMUSG00000089730	1700007P06Rik	-	RIKEN cDNA 1700007P06 gene	ncRNA
chipseq_peak_1899	chr10	102877957	102878377	+	0	NA	Intergenic	Intergenic	150610	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding
chipseq_peak_14109	chrX	158533049	158533448	+	0	NA	Intergenic	L1MEf|LINE|L1	-490051	NM_001310719	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding
chipseq_peak_1826	chr10	96263643	96264008	+	0	NA	Intergenic	Intergenic	37618	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA
chipseq_peak_4855	chr15	18927665	18929094	+	0	NA	intron (NM_009865, intron 2 of 11)	intron (NM_009865, intron 2 of 11)	108050	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_13537	chr9	50119782	50121675	+	0	NA	Intergenic	Intergenic	112454	NR_131161	71873		NR_131161		2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA
chipseq_peak_7165	chr19	26308378	26309019	+	0	NA	Intergenic	Intergenic	-296462	NM_011416	67155	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
chipseq_peak_5413	chr15	94874757	94875718	+	0	NA	intron (NM_178789, intron 3 of 7)	intron (NM_178789, intron 3 of 7)	246052	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding
chipseq_peak_13081	chr8	91283828	91284356	+	0	NA	intron (NM_173431, intron 9 of 25)	intron (NM_173431, intron 9 of 25)	29130	NM_173431	244585	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding
chipseq_peak_10673	chr5	74129701	74129989	+	0	NA	Intergenic	MIR|SINE|MIR	36315	NR_031758	100313943	Mm.46547	NR_031758	ENSMUSG00000093355	Snora26	MBI-6	small nucleolar RNA, H/ACA box 26	snoRNA
chipseq_peak_1469	chr10	38572983	38574118	+	0	NA	Intergenic	Intergenic	248229	NM_001177783	215919	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding
chipseq_peak_2447	chr11	80601272	80603636	+	0	NA	intron (NM_177390, intron 16 of 21)	intron (NM_177390, intron 16 of 21)	-93348	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA
chipseq_peak_554	chr1	79393995	79394688	+	0	NA	Intergenic	Intergenic	45749	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding
chipseq_peak_7022	chr18	78653106	78653508	+	0	NA	Intergenic	Intergenic	-56357	NM_207651	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
chipseq_peak_5142	chr15	54403880	54404221	+	0	NA	Intergenic	Intergenic	-6724	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding
chipseq_peak_11412	chr6	40609736	40610708	+	0	NA	intron (NR_035473, intron 2 of 3)	intron (NR_035473, intron 2 of 3)	3088	NM_001001451	387513	Mm.377920	NM_001001451	ENSMUSG00000058250	Tas2r138	T2R138|Tas2r38|mt2r31	taste receptor, type 2, member 138	protein-coding
chipseq_peak_4739	chr14	120141002	120141465	+	0	NA	Intergenic	Intergenic	-98798	NM_001001490	239283	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding
chipseq_peak_3274	chr12	93221117	93221630	+	0	NA	Intergenic	Intergenic	223450	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA
chipseq_peak_982	chr1	160534090	160536128	+	0	NA	intron (NM_013862, intron 13 of 20)	intron (NM_013862, intron 13 of 20)	42644	NM_001146330	620246	Mm.478780	NM_001146330		Gpr52	EG620246	G protein-coupled receptor 52	protein-coding
chipseq_peak_8186	chr2	132927449	132927878	+	0	NA	intron (NM_198029, intron 6 of 14)	L1MB3|LINE|L1	18373	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family homolog 1 (Drosophila)	protein-coding
chipseq_peak_11090	chr5	143626204	143626570	+	0	NA	intron (NM_011182, intron 1 of 12)	LTR33A_|LTR|ERVL	3940	NM_011182	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding
chipseq_peak_8170	chr2	130469158	130470004	+	0	NA	intron (NM_008980, intron 1 of 21)	intron (NM_008980, intron 1 of 21)	19303	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding
chipseq_peak_11383	chr6	36903717	36904061	+	0	NA	intron (NM_001081206, intron 28 of 33)	intron (NM_001081206, intron 28 of 33)	-92528	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_10277	chr5	11968100	11968708	+	0	NA	Intergenic	Intergenic	50361	NM_001177510	545732	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding
chipseq_peak_10968	chr5	122327262	122327863	+	0	NA	intron (NM_144912, intron 10 of 10)	intron (NM_144912, intron 10 of 10)	26633	NM_144912	231724	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 homolog B	protein-coding
chipseq_peak_11277	chr6	22715790	22717591	+	0	NA	Intergenic	Intergenic	-158812	NM_001081306	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding
chipseq_peak_12476	chr7	117934782	117935422	+	0	NA	Intergenic	Intergenic	181045	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding
chipseq_peak_12199	chr7	71529633	71530066	+	0	NA	Intergenic	Intergenic	-379846	NR_130995	78156	Mm.243818	NR_130995		4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA
chipseq_peak_6522	chr17	90531166	90532565	+	0	NA	intron (NM_020252, intron 17 of 22)	intron (NM_020252, intron 17 of 22)	-329304	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_624	chr1	95521881	95522249	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	145529	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
chipseq_peak_6499	chr17	88336053	88336399	+	0	NA	Intergenic	Intergenic	-104486	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding
chipseq_peak_200	chr1	33645161	33646311	+	0	NA	intron (NM_008922, intron 5 of 13)	intron (NM_008922, intron 5 of 13)	24058	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding
chipseq_peak_10838	chr5	100156208	100156530	+	0	NA	intron (NM_182841, intron 1 of 7)	intron (NM_182841, intron 1 of 7)	3439	NM_182841	231503	Mm.99790	NM_182841	ENSMUSG00000050640	Tmem150c	-	transmembrane protein 150C	protein-coding
chipseq_peak_10802	chr5	93133353	93133712	+	0	NA	intron (NM_001310669, intron 1 of 10)	intron (NM_001310669, intron 1 of 10)	40116	NM_001009818	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding
chipseq_peak_3975	chr13	102886272	102887313	+	0	NA	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	126537	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA
chipseq_peak_9213	chr3	126209116	126209417	+	0	NA	Intergenic	L1M5|LINE|L1	-154586	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding
chipseq_peak_5251	chr15	66508676	66509391	+	0	NA	Intergenic	Intergenic	-8123	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding
chipseq_peak_4586	chr14	99954921	99955424	+	0	NA	intron (NM_010636, intron 4 of 6)	RCHARR1|DNA|hAT-Charlie	194624	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
chipseq_peak_7123	chr19	20536741	20537144	+	0	NA	non-coding (NR_045778, exon 3 of 3)	non-coding (NR_045778, exon 3 of 3)	15388	NR_045778	320155	Mm.447252	NR_045778		C730002L08Rik	-	RIKEN cDNA C730002L08 gene	ncRNA
chipseq_peak_6783	chr18	43402768	43403252	+	0	NA	intron (NM_001291455, intron 1 of 13)	intron (NM_001291455, intron 1 of 13)	-9633	NM_009468	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding
chipseq_peak_1233	chr10	6296353	6297072	+	0	NA	Intergenic	Intergenic	-374312	NM_019958	56533	Mm.44606	NM_019958	ENSMUSG00000019775	Rgs17	6430507P11Rik|Rgsz2	regulator of G-protein signaling 17	protein-coding
chipseq_peak_9368	chr3	150051333	150053272	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	777565	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_8622	chr3	39814879	39815245	+	0	NA	Intergenic	Intergenic	707850	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_10778	chr5	89088587	89089049	+	0	NA	intron (NM_001197147, intron 7 of 25)	intron (NM_001197147, intron 7 of 25)	201558	NM_001197147	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding
chipseq_peak_13561	chr9	52255852	52256092	+	0	NA	Intergenic	Intergenic	-87861	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding
chipseq_peak_11608	chr6	77473345	77473909	+	0	NA	intron (NM_145732, intron 8 of 18)	intron (NM_145732, intron 8 of 18)	-91152	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA
chipseq_peak_2998	chr12	53638115	53638919	+	0	NA	intron (NM_013780, intron 3 of 11)	intron (NM_013780, intron 3 of 11)	389840	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding
chipseq_peak_4343	chr14	62948948	62950144	+	0	NA	intron (NM_175546, intron 8 of 11)	(A)n|Simple_repeat|Simple_repeat	34964	NM_001037751	432867	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding
chipseq_peak_11516	chr6	54812902	54813362	+	0	NA	Intergenic	Intergenic	-3784	NM_199143	387524	Mm.286149	NM_199143		Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding
chipseq_peak_272	chr1	41819661	41821422	+	0	NA	Intergenic	Intergenic	-639289	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_10841	chr5	100886411	100886674	+	0	NA	intron (NM_172715, intron 7 of 12)	intron (NM_172715, intron 7 of 12)	40313	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
chipseq_peak_8891	chr3	76496007	76496928	+	0	NA	intron (NM_178673, intron 7 of 15)	intron (NM_178673, intron 7 of 15)	420884	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding
chipseq_peak_7251	chr19	43036238	43036991	+	0	NA	intron (NM_001081257, intron 3 of 11)	intron (NM_001081257, intron 3 of 11)	-256638	NM_019424	192236	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	Hermansky-Pudlak syndrome 1 homolog (human)	protein-coding
chipseq_peak_6263	chr17	45630024	45631067	+	0	NA	3' UTR (NM_001013767, exon 22 of 22)	3' UTR (NM_001013767, exon 22 of 22)	-28443	NM_001177469	653016	Mm.45676	NM_001177468	ENSMUSG00000079471	Gm7325	EG653016|Esgp	predicted gene 7325	protein-coding
chipseq_peak_9436	chr3	158663068	158663567	+	0	NA	Intergenic	Intergenic	-101096	NM_001081358	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding
chipseq_peak_11135	chr6	5678718	5679102	+	0	NA	Intergenic	L1ME2|LINE|L1	-46729	NM_001191025	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding
chipseq_peak_3431	chr13	14517120	14517984	+	0	NA	intron (NM_001081348, intron 1 of 28)	intron (NM_001081348, intron 1 of 28)	5674	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding
chipseq_peak_1121	chr1	177572918	177574854	+	0	NA	Intergenic	Intergenic	69057	NR_037994	75589	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA
chipseq_peak_11854	chr6	111822152	111823666	+	0	NA	Intergenic	Intergenic	-387799	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA
chipseq_peak_375	chr1	56163905	56164826	+	0	NA	Intergenic	Intergenic	145387	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_8752	chr3	55451077	55451431	+	0	NA	intron (NM_019978, intron 5 of 16)	intron (NM_019978, intron 5 of 16)	-10504	NM_001111051	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
chipseq_peak_6479	chr17	83782687	83783138	+	0	NA	intron (NM_001171052, intron 10 of 15)	Kanga2_a|DNA|TcMar-Tc2	63878	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding
chipseq_peak_5963	chr16	73784346	73785191	+	0	NA	Intergenic	Intergenic	557299	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_12549	chr7	133477278	133477900	+	0	NA	Intergenic	Intergenic	124526	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding
chipseq_peak_6567	chr18	8093208	8094051	+	0	NA	Intergenic	Intergenic	224432	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
chipseq_peak_13009	chr8	76781908	76782188	+	0	NA	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	118125	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
chipseq_peak_4595	chr14	101946855	101947413	+	0	NA	Intergenic	MIRb|SINE|MIR	217206	NM_201529	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding
chipseq_peak_8616	chr3	39209018	39209885	+	0	NA	Intergenic	Intergenic	322511	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT tumor suppressor homolog 4 (Drosophila)	protein-coding
chipseq_peak_13769	chr9	93999475	94000513	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	538087	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
chipseq_peak_10670	chr5	73977607	73977833	+	0	NA	Intergenic	Intergenic	90691	NM_177561	69727	Mm.48795	NM_177561		Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding
chipseq_peak_1685	chr10	69730384	69731161	+	0	NA	intron (NM_170730, intron 1 of 17)	intron (NM_170730, intron 1 of 17)	-194760	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_5303	chr15	71099010	71099459	+	0	NA	Intergenic	Intergenic	628604	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
chipseq_peak_13101	chr8	96991408	96991977	+	0	NA	Intergenic	MIRc|SINE|MIR	-445719	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_9174	chr3	121070568	121071166	+	0	NA	Intergenic	Intergenic	100828	NM_025637	66568	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding
chipseq_peak_7827	chr2	64067557	64068421	+	0	NA	intron (NM_001267847, intron 1 of 3)	intron (NM_001267847, intron 1 of 3)	30049	NM_021716	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding
chipseq_peak_5881	chr16	67124587	67125145	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	467748	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA
chipseq_peak_5712	chr16	47292822	47294028	+	0	NA	Intergenic	Intergenic	-796458	NM_021496	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
chipseq_peak_12339	chr7	91556409	91556980	+	0	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	465908	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_8885	chr3	75910287	75910634	+	0	NA	intron (NM_001291069, intron 2 of 15)	intron (NM_001291069, intron 2 of 15)	46489	NM_001291069	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding
chipseq_peak_3409	chr13	8207373	8207756	+	0	NA	intron (NM_001289530, intron 1 of 9)	intron (NM_001289530, intron 1 of 9)	4698	NM_001289530	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
chipseq_peak_7608	chr2	43862087	43863069	+	0	NA	intron (NM_001301832, intron 6 of 14)	intron (NM_001301832, intron 6 of 14)	113754	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_9154	chr3	119063475	119064788	+	0	NA	intron (NM_170778, intron 13 of 22)	intron (NM_170778, intron 13 of 22)	501953	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding
chipseq_peak_1240	chr10	8511713	8512657	+	0	NA	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	6640	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding
chipseq_peak_194	chr1	33124868	33125552	+	0	NA	Intergenic	Intergenic	544584	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding
chipseq_peak_2445	chr11	80577352	80578313	+	0	NA	intron (NM_177390, intron 20 of 21)	intron (NM_177390, intron 20 of 21)	-68726	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA
chipseq_peak_7791	chr2	61542847	61543634	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-35346	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding
chipseq_peak_6219	chr17	30187635	30189068	+	0	NA	intron (NM_148926, intron 3 of 4)	intron (NM_148926, intron 3 of 4)	68184	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA
chipseq_peak_4795	chr15	11626157	11626889	+	0	NA	Intergenic	Intergenic	-226865	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding
chipseq_peak_11115	chr5	149292891	149293503	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	28193	NM_001308462	11690	Mm.19844	NM_009663		Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding
chipseq_peak_11610	chr6	77631143	77631463	+	0	NA	intron (NM_145732, intron 7 of 18)	intron (NM_145732, intron 7 of 18)	-248828	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA
chipseq_peak_12078	chr7	45161847	45162372	+	0	NA	Intergenic	Intergenic	-1812	NM_182993	72961	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding
chipseq_peak_8318	chr2	148752196	148752654	+	0	NA	intron (NM_177655, intron 2 of 3)	intron (NM_177655, intron 2 of 3)	2064	NM_177655	228756	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding
chipseq_peak_483	chr1	70200449	70201389	+	0	NA	intron (NM_029160, intron 11 of 16)	intron (NM_029160, intron 11 of 16)	249304	NM_025728	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding
chipseq_peak_8061	chr2	107614747	107615418	+	0	NA	Intergenic	Intergenic	324493	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_9601	chr4	23601130	23603289	+	0	NA	Intergenic	Intergenic	-894253	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_2070	chr10	123918976	123919473	+	0	NA	Intergenic	Intergenic	-549850	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo
chipseq_peak_6446	chr17	78271149	78271566	+	0	NA	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	71109	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
chipseq_peak_8656	chr3	45560690	45561535	+	0	NA	Intergenic	Intergenic	-121803	NR_040594	72274	Mm.396202	NR_040594	ENSMUSG00000100799	1700027H10Rik	-	RIKEN cDNA 1700027H10 gene	ncRNA
chipseq_peak_12173	chr7	63654086	63654465	+	0	NA	intron (NM_130880, intron 4 of 13)	L1_Mur3|LINE|L1	209503	NM_130880	170711	Mm.156872	NM_130880	ENSMUSG00000033510	Otud7a	AJ430384|Otud7	OTU domain containing 7A	protein-coding
chipseq_peak_8767	chr3	56640708	56641329	+	0	NA	Intergenic	Intergenic	-457317	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_11686	chr6	97216200	97216781	+	0	NA	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	5698	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding
chipseq_peak_9782	chr4	48987831	48988449	+	0	NA	Intergenic	Intergenic	-71322	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding
chipseq_peak_1832	chr10	97122777	97123024	+	0	NA	Intergenic	Intergenic	87132	NR_045358	75301	Mm.108650	NR_045358		4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA
chipseq_peak_9780	chr4	48900489	48901771	+	0	NA	Intergenic	Intergenic	-158332	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding
chipseq_peak_13922	chr9	113468536	113468968	+	0	NA	Intergenic	L1MA5|LINE|L1	118400	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_2553	chr11	105473634	105474371	+	0	NA	Intergenic	Intergenic	-17267	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding
chipseq_peak_2286	chr11	39545550	39546245	+	0	NA	Intergenic	Intergenic	-155672	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_1479	chr10	39427016	39427393	+	0	NA	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	57405	NM_008054	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding
chipseq_peak_4321	chr14	59903789	59904504	+	0	NA	intron (NM_015803, intron 24 of 35)	intron (NM_015803, intron 24 of 35)	182688	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding
chipseq_peak_72	chr1	18857465	18857943	+	0	NA	Intergenic	Intergenic	-245318	NM_153154	226896	Mm.244858	NM_153154	ENSMUSG00000042596	Tfap2d	Tcfap2d	transcription factor AP-2, delta	protein-coding
chipseq_peak_10763	chr5	85403585	85404038	+	0	NA	Intergenic	Intergenic	661772	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_789	chr1	129484414	129484899	+	0	NA	intron (NM_172485, intron 2 of 27)	MIRb|SINE|MIR	211352	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding
chipseq_peak_4197	chr14	22323342	22323989	+	0	NA	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	219133	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA
chipseq_peak_13123	chr8	99532602	99533621	+	0	NA	intron (NR_132435, intron 1 of 4)	intron (NR_132435, intron 1 of 4)	116437	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_4808	chr15	13158987	13159350	+	0	NA	intron (NM_007666, intron 1 of 11)	L2c|LINE|L2	14507	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_13290	chr9	9476828	9478355	+	0	NA	Intergenic	Intergenic	-238578	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding
chipseq_peak_1002	chr1	164428950	164429322	+	0	NA	intron (NM_001293313, intron 13 of 13)	intron (NM_001293313, intron 13 of 13)	29219	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding
chipseq_peak_7116	chr19	20090646	20090951	+	0	NA	Intergenic	L1MA4|LINE|L1	299873	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding
chipseq_peak_4273	chr14	40816593	40817146	+	0	NA	intron (NM_177816, intron 7 of 7)	L1ME3G|LINE|L1	76096	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding
chipseq_peak_450	chr1	63995338	63995699	+	0	NA	Intergenic	Intergenic	-11035	NR_035484	100316708		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA
chipseq_peak_6477	chr17	83742518	83742891	+	0	NA	intron (NM_001171052, intron 4 of 15)	intron (NM_001171052, intron 4 of 15)	36541	NM_054082	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding
chipseq_peak_3113	chr12	69823581	69823976	+	0	NA	intron (NM_201519, intron 20 of 30)	L1MD3|LINE|L1	-19908	NR_038173	70934	Mm.440427	NR_038172		4931403G20Rik	-	RIKEN cDNA 4931403G20 gene	ncRNA
chipseq_peak_4166	chr14	17580860	17581328	+	0	NA	Intergenic	Intergenic	-79866	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding
chipseq_peak_8685	chr3	50014080	50015071	+	0	NA	Intergenic	Intergenic	-257259	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding
chipseq_peak_13955	chr9	122238926	122239467	+	0	NA	intron (NM_133979, intron 11 of 12)	B2_Mm2|SINE|B2	34832	NR_106185	102465896		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA
chipseq_peak_9185	chr3	123077428	123078258	+	0	NA	3' UTR (NM_080451, exon 5 of 5)	3' UTR (NM_080451, exon 5 of 5)	-42856	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding
chipseq_peak_1043	chr1	170571214	170571793	+	0	NA	intron (NM_001109985, intron 1 of 9)	HAL1M8|LINE|L1	-14393	NM_027528	70729	Mm.487078	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding
chipseq_peak_13864	chr9	106955534	106955751	+	0	NA	exon (NM_153413, exon 30 of 53)	exon (NM_153413, exon 30 of 53)	-63704	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding
chipseq_peak_2127	chr11	10046524	10047624	+	0	NA	Intergenic	Intergenic	855132	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
chipseq_peak_7133	chr19	22189755	22190046	+	0	NA	intron (NM_001035239, intron 1 of 24)	intron (NM_001035239, intron 1 of 24)	50783	NM_001035242	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding
chipseq_peak_10193	chr4	133729422	133730006	+	0	NA	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	-12606	NR_106086	102465707		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA
chipseq_peak_2350	chr11	51342599	51343103	+	0	NA	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	52931	NM_153393	237759	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding
chipseq_peak_92	chr1	21868342	21869606	+	0	NA	intron (NM_001310477, intron 1 of 12)	intron (NM_001310477, intron 1 of 12)	92968	NM_023872	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding
chipseq_peak_12937	chr8	61236774	61237437	+	0	NA	intron (NM_021506, intron 2 of 11)	intron (NM_021506, intron 2 of 11)	12934	NM_021506	59009	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding
chipseq_peak_11274	chr6	22548653	22549359	+	0	NA	Intergenic	Intergenic	-192925	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding
chipseq_peak_4435	chr14	77457045	77457681	+	0	NA	intron (NM_172813, intron 5 of 18)	A-rich|Low_complexity|Low_complexity	49505	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA
chipseq_peak_8533	chr3	25597459	25597885	+	0	NA	intron (NM_138666, intron 5 of 7)	intron (NM_138666, intron 5 of 7)	555635	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_258	chr1	41271171	41272209	+	0	NA	Intergenic	Intergenic	-90438	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_4012	chr13	107969701	107970740	+	0	NA	Intergenic	Intergenic	-74254	NM_001048250	75616	Mm.491164	NM_001048250		Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding
chipseq_peak_3994	chr13	105442489	105442856	+	0	NA	Intergenic	Intergenic	-1021	NM_008308	15550	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding
chipseq_peak_4481	chr14	83639642	83640814	+	0	NA	Intergenic	Intergenic	-803335	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
chipseq_peak_909	chr1	147411174	147412691	+	0	NA	Intergenic	Intergenic	914245	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_5192	chr15	61240262	61241455	+	0	NA	Intergenic	Intergenic	-319588	NM_001081067	117586	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding
chipseq_peak_3195	chr12	77796794	77797300	+	0	NA	Intergenic	Intergenic	386906	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding
chipseq_peak_6785	chr18	43726527	43727461	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	10243	NM_009258	20730	Mm.272	NM_009258	ENSMUSG00000024503	Spink1	Spink3|p12	serine peptidase inhibitor, Kazal type 1	protein-coding
chipseq_peak_8353	chr2	160653288	160653571	+	0	NA	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	7532	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding
chipseq_peak_5657	chr16	41764161	41764743	+	0	NA	intron (NM_175548, intron 1 of 5)	UCON26|Unknown|Unknown	231110	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_2483	chr11	86655725	86656044	+	0	NA	promoter-TSS (NR_106195)	promoter-TSS (NR_106195)	-187	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA
chipseq_peak_13277	chr9	5123816	5124071	+	0	NA	Intergenic	Intergenic	-174574	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding
chipseq_peak_5815	chr16	60584374	60584673	+	0	NA	intron (NM_007938, intron 1 of 17)	ORR1C2|LTR|ERVL-MaLR	21008	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding
chipseq_peak_5803	chr16	57438211	57438891	+	0	NA	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	85274	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding
chipseq_peak_867	chr1	141774978	141775436	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-1118805	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_12948	chr8	64659051	64659469	+	0	NA	intron (NM_013494, intron 1 of 8)	intron (NM_013494, intron 1 of 8)	33780	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding
chipseq_peak_3530	chr13	35649680	35650626	+	0	NA	Intergenic	L1MA9|LINE|L1	-9709	NM_009881	12593	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding
chipseq_peak_12730	chr8	34679723	34680172	+	0	NA	Intergenic	Intergenic	-39631	NR_040706	330734	Mm.149998	NR_040706		B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA
chipseq_peak_6746	chr18	35571510	35571945	+	0	NA	intron (NM_010771, intron 1 of 14)	intron (NM_010771, intron 1 of 14)	9569	NM_010771	17184	Mm.215034	NM_010771		Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding
chipseq_peak_4784	chr15	9070754	9071391	+	0	NA	promoter-TSS (NM_001085410)	promoter-TSS (NM_001085410)	-188	NM_001286253	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding
chipseq_peak_2377	chr11	63572574	63573654	+	0	NA	Intergenic	Intergenic	-187045	NR_105772	102466632		NR_105772	ENSMUSG00000098829	Mir6354	Gm27282|mmu-mir-6354	microRNA 6354	ncRNA
chipseq_peak_12234	chr7	75302474	75302982	+	0	NA	intron (NM_153579, intron 1 of 12)	intron (NM_153579, intron 1 of 12)	5658	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding
chipseq_peak_10033	chr4	90444951	90445771	+	0	NA	Intergenic	Intergenic	-84047	NR_033610	619842	Mm.484218	NR_033610	ENSMUSG00000080756	Gm12633	OTTMUSG00000007790	zinc finger protein 352 pseudogene	pseudo
chipseq_peak_8898	chr3	77993438	77994135	+	0	NA	Intergenic	Intergenic	1151101	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_1481	chr10	39834438	39835133	+	0	NA	intron (NM_011264, intron 16 of 31)	intron (NM_011264, intron 16 of 31)	64453	NR_033628	213332	Mm.484359	NR_033628		AA474331	-	expressed sequence AA474331	pseudo
chipseq_peak_4158	chr14	14951965	14952469	+	0	NA	intron (NM_001195229, intron 25 of 34)	intron (NM_001195229, intron 25 of 34)	131402	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding
chipseq_peak_1569	chr10	52979144	52979661	+	0	NA	intron (NM_178675, intron 2 of 7)	MamGypLTR1d|LTR|Gypsy	288901	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
chipseq_peak_7225	chr19	34273128	34273598	+	0	NA	Intergenic	Intergenic	-17296	NM_007987	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding
chipseq_peak_4132	chr14	9249441	9249911	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	583286	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA
chipseq_peak_2385	chr11	66043644	66044051	+	0	NA	intron (NM_001099633, intron 29 of 68)	L1ME4a|LINE|L1	124704	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding
chipseq_peak_12285	chr7	87186404	87187111	+	0	NA	Intergenic	Intergenic	-59892	NM_001285835	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding
chipseq_peak_13558	chr9	52072256	52072537	+	0	NA	intron (NM_001104616, intron 9 of 13)	intron (NM_001104616, intron 9 of 13)	-23691	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_5519	chr16	17055562	17056169	+	0	NA	Intergenic	Intergenic	-14274	NM_001291047	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding
chipseq_peak_8984	chr3	84745560	84746290	+	0	NA	Intergenic	Intergenic	-69652	NM_001177773	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding
chipseq_peak_3048	chr12	61394373	61395377	+	0	NA	Intergenic	Intergenic	126945	NR_045049	100504101	Mm.235026	NR_045049		Gm20063	-	predicted gene, 20063	ncRNA
chipseq_peak_8929	chr3	80211225	80211863	+	0	NA	Intergenic	Intergenic	325614	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_13991	chrX	49186202	49186824	+	0	NA	intron (NM_001271449, intron 2 of 15)	intron (NM_001271449, intron 2 of 15)	101729	NM_001271447	209224	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding
chipseq_peak_6703	chr18	30449920	30450661	+	0	NA	Intergenic	Intergenic	177394	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_4634	chr14	107687087	107687827	+	0	NA	Intergenic	LTR108a_Mam|LTR|ERVL	-1200937	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
chipseq_peak_1595	chr10	56499693	56499995	+	0	NA	Intergenic	Intergenic	122544	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding
chipseq_peak_7667	chr2	47776967	47777458	+	0	NA	Intergenic	Intergenic	-1036897	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_10762	chr5	85345969	85347381	+	0	NA	Intergenic	Intergenic	718908	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_8005	chr2	97414117	97415075	+	0	NA	intron (NM_001289742, intron 5 of 7)	intron (NM_001289742, intron 5 of 7)	-53061	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_7247	chr19	42394082	42394398	+	0	NA	intron (NM_145123, intron 2 of 14)	intron (NM_145123, intron 2 of 14)	37543	NM_145123	72832	Mm.313558	NM_145123	ENSMUSG00000042401	Crtac1	2810454P21Rik|AW047536|Crtac1B|Lotus	cartilage acidic protein 1	protein-coding
chipseq_peak_10098	chr4	104112586	104114764	+	0	NA	Intergenic	Intergenic	-253863	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
chipseq_peak_11304	chr6	26761433	26763036	+	0	NA	Intergenic	Intergenic	830808	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA
chipseq_peak_31	chr1	10510390	10510866	+	0	NA	intron (NM_177834, intron 2 of 10)	L1MA4|LINE|L1	209317	NM_001289497	329093	Mm.336423	NM_177834	ENSMUSG00000042501	Cpa6	9030616D13Rik	carboxypeptidase A6	protein-coding
chipseq_peak_9694	chr4	31818926	31820169	+	0	NA	Intergenic	Intergenic	-144560	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_13056	chr8	86464089	86465552	+	0	NA	Intergenic	Intergenic	101770	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
chipseq_peak_4951	chr15	29785857	29786313	+	0	NA	Intergenic	Intergenic	-386508	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding
chipseq_peak_12018	chr6	148406693	148407296	+	0	NA	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	37358	NM_198967	387314	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chipseq_peak_13659	chr9	66927638	66928116	+	0	NA	Intergenic	Intergenic	-8172	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding
chipseq_peak_13248	chr8	125897889	125899338	+	0	NA	promoter-TSS (NM_175561)	promoter-TSS (NM_175561)	-296	NM_175561	270109	Mm.145535	NM_175561	ENSMUSG00000060212	Pcnxl2	A830048P05|AU067631|E330039K12Rik|mKIAA0435	pecanex-like 2 (Drosophila)	protein-coding
chipseq_peak_10718	chr5	81359366	81360054	+	0	NA	intron (NM_198702, intron 5 of 27)	intron (NM_198702, intron 5 of 27)	338117	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_8026	chr2	101295293	101297539	+	0	NA	Intergenic	Intergenic	-328332	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
chipseq_peak_4769	chr15	3873713	3873960	+	0	NA	Intergenic	L2a|LINE|L2	105737	NM_134099	106052	Mm.234191	NM_134099		Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding
chipseq_peak_6945	chr18	67091021	67091580	+	0	NA	intron (NM_177137, intron 1 of 11)	intron (NM_177137, intron 1 of 11)	3002	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding
chipseq_peak_12284	chr7	87113651	87114123	+	0	NA	Intergenic	Intergenic	117422	NM_001105190	621430	Mm.469903	NM_001105190	ENSMUSG00000090362	Vmn2r79	EG621430	vomeronasal 2, receptor 79	protein-coding
chipseq_peak_9723	chr4	35746726	35747243	+	0	NA	intron (NM_001166000, intron 8 of 8)	intron (NM_001166000, intron 8 of 8)	98220	NM_175516	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_13882	chr9	112037454	112038364	+	0	NA	Intergenic	Intergenic	80802	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA
chipseq_peak_5002	chr15	37725671	37727252	+	0	NA	intron (NM_134094, intron 1 of 6)	intron (NM_134094, intron 1 of 6)	65539	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding
chipseq_peak_908	chr1	147343511	147344219	+	0	NA	Intergenic	RLTR34C_MM|LTR|ERVK	846178	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_10902	chr5	111581277	111582360	+	0	NA	non-coding (NR_015546, exon 1 of 4)	non-coding (NR_015546, exon 1 of 4)	257	NR_015546	330164	Mm.193276	NM_177875	ENSMUSG00000052848	C130026L21Rik	-	RIKEN cDNA C130026L21 gene	ncRNA
chipseq_peak_6002	chr16	75391849	75393605	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	193334	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_10249	chr5	5239976	5242834	+	0	NA	intron (NM_001310448, intron 2 of 13)	intron (NM_001310448, intron 2 of 13)	24663	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding
chipseq_peak_6803	chr18	47796979	47797626	+	0	NA	Intergenic	Intergenic	-125539	NR_045404	414127	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA
chipseq_peak_8418	chr2	180519075	180519440	+	0	NA	intron (NM_018766, intron 1 of 3)	B3A|SINE|B2	19281	NM_018766	18216	Mm.301712	NM_018766	ENSMUSG00000027568	Ntsr1	NT-1R|NTR-1|NTR1	neurotensin receptor 1	protein-coding
chipseq_peak_1348	chr10	24725251	24725554	+	0	NA	Intergenic	Intergenic	-13243	NM_001308327	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding
chipseq_peak_5741	chr16	49970209	49970682	+	0	NA	Intergenic	Intergenic	-10015	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA
chipseq_peak_6621	chr18	19781361	19782157	+	0	NA	Intergenic	Intergenic	220338	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_12247	chr7	76674733	76675384	+	0	NA	intron (NM_001199224, intron 18 of 22)	intron (NM_001199224, intron 18 of 22)	445171	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_5743	chr16	50057418	50059716	+	0	NA	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	14285	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA
chipseq_peak_1508	chr10	43574835	43575460	+	0	NA	Intergenic	Intergenic	-4022	NM_009846	12484	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding
chipseq_peak_456	chr1	65179393	65180275	+	0	NA	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-692	NM_010497	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding
chipseq_peak_11196	chr6	13696884	13697632	+	0	NA	Intergenic	Intergenic	-19292	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	B630005N14Rik	AI666701	RIKEN cDNA B630005N14 gene	protein-coding
chipseq_peak_3906	chr13	94330382	94331046	+	0	NA	Intergenic	Intergenic	28209	NR_045619	328309	Mm.174191	NM_183205		Gm9776	A530089L17|ENSMUSG00000042857	predicted gene 9776	ncRNA
chipseq_peak_8051	chr2	106720378	106721054	+	0	NA	intron (NM_029837, intron 2 of 6)	intron (NM_029837, intron 2 of 6)	25115	NM_029837	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding
chipseq_peak_3145	chr12	71991355	71991651	+	0	NA	3' UTR (NM_172464, exon 26 of 26)	3' UTR (NM_172464, exon 26 of 26)	79488	NM_181752	238252	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding
chipseq_peak_2958	chr12	50108415	50116129	+	0	NA	Intergenic	UCON31|Unknown|Unknown	536951	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_9689	chr4	31492971	31493548	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-470848	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_12206	chr7	72592010	72593884	+	0	NA	Intergenic	Intergenic	-286352	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding
chipseq_peak_12453	chr7	114020591	114021091	+	0	NA	intron (NM_145584, intron 7 of 15)	intron (NM_145584, intron 7 of 15)	96940	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene homolog 2	protein-coding
chipseq_peak_12389	chr7	96523457	96524076	+	0	NA	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-181802	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA
chipseq_peak_1701	chr10	71678586	71679194	+	0	NA	Intergenic	Intergenic	301800	NR_003644	108950	Mm.212793	NM_175390	ENSMUSG00000043859	1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo
chipseq_peak_6741	chr18	34462062	34462607	+	0	NA	intron (NM_146084, intron 10 of 20)	intron (NM_146084, intron 10 of 20)	44489	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding
chipseq_peak_8325	chr2	154459266	154460711	+	0	NA	intron (NM_001285446, intron 1 of 10)	(GGGAGA)n|Simple_repeat|Simple_repeat	23504	NM_009823	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding
chipseq_peak_683	chr1	105660084	105660375	+	0	NA	intron (NM_013784, intron 1 of 30)	intron (NM_013784, intron 1 of 30)	3447	NM_013784	27392	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding
chipseq_peak_4725	chr14	119235004	119235275	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	96874	NM_015820	50787	Mm.445777	NM_015820		Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
chipseq_peak_12749	chr8	37986744	37987337	+	0	NA	intron (NM_145841, intron 1 of 7)	L1ME1|LINE|L1	265162	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA
chipseq_peak_8596	chr3	35224728	35225943	+	0	NA	Intergenic	Intergenic	-302684	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA
chipseq_peak_12622	chr8	10053463	10053902	+	0	NA	Intergenic	Intergenic	47049	NM_033622	24099	Mm.28835	NM_033622		Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding
chipseq_peak_10743	chr5	83792207	83793117	+	0	NA	Intergenic	Intergenic	-437467	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding
chipseq_peak_3781	chr13	82933225	82935131	+	0	NA	Intergenic	Intergenic	-235845	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_6670	chr18	24733088	24733326	+	0	NA	intron (NM_175276, intron 1 of 26)	intron (NM_175276, intron 1 of 26)	24584	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding
chipseq_peak_9533	chr4	14087696	14088704	+	0	NA	Intergenic	Intergenic	203109	NR_131155	100040030	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA
chipseq_peak_7059	chr18	89575262	89575761	+	0	NA	intron (NM_001039173, intron 2 of 7)	intron (NM_001039173, intron 2 of 7)	193625	NM_001039173	623279	Mm.447164	NM_001039173		Dok6	Dok-6	docking protein 6	protein-coding
chipseq_peak_4612	chr14	105599184	105600118	+	0	NA	Intergenic	Intergenic	10102	NR_102319	380930	Mm.427836	NR_102319		9330188P03Rik	Gm1589|mgt-6	RIKEN cDNA 9330188P03 gene	ncRNA
chipseq_peak_10092	chr4	103802273	103802776	+	0	NA	Intergenic	Intergenic	420024	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA
chipseq_peak_4533	chr14	91569117	91569989	+	0	NA	Intergenic	Intergenic	1442662	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
chipseq_peak_1354	chr10	25539231	25539917	+	0	NA	Intergenic	Intergenic	-3302	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding
chipseq_peak_1305	chr10	16578566	16578922	+	0	NA	Intergenic	Intergenic	517038	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA
chipseq_peak_6197	chr17	13546429	13546952	+	0	NA	intron (NR_045436, intron 2 of 4)	L3|LINE|CR1	7404	NR_045436	72578	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA
chipseq_peak_11180	chr6	12699078	12699407	+	0	NA	intron (NM_001164805, intron 1 of 26)	ORR1C2-int|LTR|ERVL-MaLR	50011	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
chipseq_peak_4192	chr14	21533938	21534387	+	0	NA	intron (NM_001205241, intron 2 of 16)	intron (NM_001205241, intron 2 of 16)	34377	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chipseq_peak_5589	chr16	31592056	31592503	+	0	NA	Intergenic	Intergenic	-71164	NM_001252435	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding
chipseq_peak_4071	chr13	111834581	111835127	+	0	NA	Intergenic	Intergenic	-25871	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding
chipseq_peak_8489	chr3	18399194	18399461	+	0	NA	Intergenic	Intergenic	81150	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
chipseq_peak_5193	chr15	61416288	61417406	+	0	NA	Intergenic	Intergenic	357604	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA
chipseq_peak_8112	chr2	114486964	114487389	+	0	NA	Intergenic	Intergenic	167752	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
chipseq_peak_1155	chr1	184559267	184559828	+	0	NA	Intergenic	L1ME4a|LINE|L1	-1856	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA
chipseq_peak_7971	chr2	88422225	88422500	+	0	NA	TTS (NM_001011816)	TTS (NM_001011816)	1661	NM_001011816	258060	Mm.389282	NM_001011816	ENSMUSG00000075125	Olfr1181	MOR225-9P	olfactory receptor 1181	protein-coding
chipseq_peak_9710	chr4	33696849	33697383	+	0	NA	Intergenic	Intergenic	-227516	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding
chipseq_peak_3163	chr12	74278596	74279278	+	0	NA	Intergenic	Intergenic	-5339	NR_030735	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA
chipseq_peak_5672	chr16	42262897	42263358	+	0	NA	intron (NM_008083, intron 2 of 2)	intron (NM_008083, intron 2 of 2)	40342	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
chipseq_peak_9156	chr3	119301834	119302364	+	0	NA	intron (NM_170778, intron 19 of 22)	intron (NM_170778, intron 19 of 22)	481289	NM_019550	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
chipseq_peak_13349	chr9	23621021	23621531	+	0	NA	Intergenic	Intergenic	398200	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding
chipseq_peak_5908	chr16	70235174	70235486	+	0	NA	Intergenic	Intergenic	-78619	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding
chipseq_peak_5887	chr16	67575537	67576122	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	45079	NM_001145977	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_3897	chr13	93433889	93434959	+	0	NA	3' UTR (NM_021310, exon 11 of 11)	3' UTR (NM_021310, exon 11 of 11)	65384	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding
chipseq_peak_2923	chr12	45970404	45970761	+	0	NA	Intergenic	Intergenic	848193	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
chipseq_peak_7360	chr2	4406802	4407181	+	0	NA	intron (NM_001177843, intron 1 of 23)	intron (NM_001177843, intron 1 of 23)	6015	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding
chipseq_peak_5726	chr16	48516853	48517938	+	0	NA	intron (NM_010816, intron 14 of 26)	intron (NM_010816, intron 14 of 26)	86158	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding
chipseq_peak_7954	chr2	82579502	82580220	+	0	NA	Intergenic	Intergenic	526203	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding
chipseq_peak_10759	chr5	84872630	84872952	+	0	NA	Intergenic	Intergenic	-455409	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_10007	chr4	87020457	87020957	+	0	NA	intron (NM_172426, intron 7 of 10)	intron (NM_172426, intron 7 of 10)	146293	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding
chipseq_peak_7614	chr2	43986067	43991918	+	0	NA	intron (NM_001301832, intron 7 of 14)	intron (NM_001301832, intron 7 of 14)	76332	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_3040	chr12	60149311	60149740	+	0	NA	Intergenic	Lx8|LINE|L1	-930042	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_2233	chr11	29725139	29725629	+	0	NA	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	6821	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding
chipseq_peak_4567	chr14	95777415	95777709	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-103704	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding
chipseq_peak_10366	chr5	23911607	23911972	+	0	NA	intron (NR_037304, intron 2 of 4)	intron (NR_037304, intron 2 of 4)	59556	NR_028536	100217436		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA
chipseq_peak_13364	chr9	25570565	25571008	+	0	NA	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	89189	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chipseq_peak_9487	chr4	9416821	9417118	+	0	NA	intron (NM_028940, intron 3 of 5)	intron (NM_028940, intron 3 of 5)	147652	NM_028940	74438	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding
chipseq_peak_12983	chr8	68247512	68248340	+	0	NA	Intergenic	Intergenic	-28602	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding
chipseq_peak_8373	chr2	164126747	164127113	+	0	NA	intron (NM_021420, intron 10 of 10)	Charlie1a|DNA|hAT-Charlie	44183	NM_008435	16538	Mm.6217	NM_008435	ENSMUSG00000040164	Kcns1	Kv9.1	K+ voltage-gated channel, subfamily S, 1	protein-coding
chipseq_peak_2542	chr11	102787576	102788705	+	0	NA	Intergenic	B4|SINE|B4	16879	NM_008122	14615	Mm.390369	NM_008122	ENSMUSG00000034520	Gjc1	C130009G16Rik|Cnx45|Cx45|Gja-7|Gja7	gap junction protein, gamma 1	protein-coding
chipseq_peak_7293	chr19	50807688	50809044	+	0	NA	Intergenic	Intergenic	-129720	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_2710	chr12	13834695	13835102	+	0	NA	Intergenic	Intergenic	317140	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding
chipseq_peak_7057	chr18	89520689	89521534	+	0	NA	intron (NM_001039173, intron 3 of 7)	intron (NM_001039173, intron 3 of 7)	248025	NM_001039173	623279	Mm.447164	NM_001039173		Dok6	Dok-6	docking protein 6	protein-coding
chipseq_peak_10936	chr5	115744996	115745735	+	0	NA	Intergenic	Intergenic	-13806	NM_001080808	75665	Mm.233914	NM_001080808	ENSMUSG00000041609	Ccdc64	2210403N09Rik|BICDR-1	coiled-coil domain containing 64	protein-coding
chipseq_peak_390	chr1	56344027	56346005	+	0	NA	Intergenic	Intergenic	292435	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_10027	chr4	88237318	88238069	+	0	NA	intron (NM_001081184, intron 15 of 43)	intron (NM_001081184, intron 15 of 43)	115653	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA
chipseq_peak_5977	chr16	74412618	74413367	+	0	NA	Intergenic	Intergenic	-2080	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_4853	chr15	18819843	18821731	+	0	NA	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	458	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_13849	chr9	105544329	105544667	+	0	NA	Intergenic	Intergenic	-23241	NM_001253831	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding
chipseq_peak_9164	chr3	120531577	120532062	+	0	NA	intron (NR_130170, intron 12 of 18)	intron (NR_130170, intron 12 of 18)	354913	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_9838	chr4	59458474	59459842	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-20525	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding
chipseq_peak_7276	chr19	48142259	48142623	+	0	NA	Intergenic	Intergenic	-63584	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding
chipseq_peak_12321	chr7	91131412	91133319	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	41579	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_6533	chr17	90876510	90877052	+	0	NA	intron (NM_020252, intron 4 of 22)	intron (NM_020252, intron 4 of 22)	15612	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_9743	chr4	38922998	38923674	+	0	NA	Intergenic	Intergenic	-526957	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
chipseq_peak_11659	chr6	92609586	92611132	+	0	NA	intron (NM_001081146, intron 2 of 8)	intron (NM_001081146, intron 2 of 8)	-42993	NM_001134461	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle homolog 2 (Drosophila)	protein-coding
chipseq_peak_6412	chr17	71997694	71998002	+	0	NA	intron (NM_007439, intron 5 of 28)	intron (NM_007439, intron 5 of 28)	215901	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding
chipseq_peak_13270	chr8	128415671	128416601	+	0	NA	intron (NM_008737, intron 2 of 16)	intron (NM_008737, intron 2 of 16)	56895	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA
chipseq_peak_3542	chr13	38557282	38557764	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-28699	NM_001289598	105245	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding
chipseq_peak_11301	chr6	25808494	25809498	+	0	NA	intron (NM_133931, intron 1 of 17)	intron (NM_133931, intron 1 of 17)	230	NM_133931	101185	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding
chipseq_peak_11838	chr6	110538507	110538890	+	0	NA	Intergenic	Intergenic	-106900	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_715	chr1	113392952	113394136	+	0	NA	Intergenic	Intergenic	-1528626	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
chipseq_peak_11429	chr6	42413456	42413824	+	0	NA	Intergenic	L1ME4b|LINE|L1	8111	NM_199159	387512	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding
chipseq_peak_13567	chr9	52748103	52748737	+	0	NA	intron (NR_045333, intron 2 of 4)	intron (NR_045333, intron 2 of 4)	68557	NR_045333	382139	Mm.335162	NR_045333		Gm1715	-	predicted gene 1715	ncRNA
chipseq_peak_10990	chr5	126525958	126526312	+	0	NA	Intergenic	Intergenic	-504654	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA
chipseq_peak_8776	chr3	57204149	57204552	+	0	NA	Intergenic	Intergenic	97569	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding
chipseq_peak_7320	chr19	57352058	57352913	+	0	NA	intron (NR_040316, intron 1 of 2)	ERVL-B4-int|LTR|ERVL	8414	NR_040316	320879	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA
chipseq_peak_10071	chr4	98022016	98022326	+	0	NA	intron (NM_001122953, intron 6 of 9)	intron (NM_001122953, intron 6 of 9)	244545	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
chipseq_peak_2674	chr12	7918253	7918698	+	0	NA	Intergenic	Intergenic	-59202	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding
chipseq_peak_12644	chr8	14740621	14741496	+	0	NA	intron (NM_001145965, intron 5 of 14)	intron (NM_001145965, intron 5 of 14)	-147478	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding
chipseq_peak_2743	chr12	25870618	25871718	+	0	NA	Intergenic	Intergenic	339337	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
chipseq_peak_4413	chr14	75314500	75315218	+	0	NA	intron (NM_026083, intron 7 of 18)	intron (NM_026083, intron 7 of 18)	30486	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding
chipseq_peak_3866	chr13	90476636	90477394	+	0	NA	Intergenic	L1MA9|LINE|L1	387348	NM_025335	66074	Mm.241387	NM_025335		Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding
chipseq_peak_9789	chr4	50913492	50914600	+	0	NA	Intergenic	Intergenic	-302632	NM_001162865	74914	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding
chipseq_peak_5748	chr16	50717456	50717940	+	0	NA	Intergenic	Intergenic	-9434	NR_105782	102466634		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA
chipseq_peak_3379	chr13	5225373	5227219	+	0	NA	Intergenic	Intergenic	-617132	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding
chipseq_peak_11098	chr5	146274378	146274943	+	0	NA	intron (NM_153599, intron 4 of 12)	MLT2D|LTR|ERVL	42985	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding
chipseq_peak_8076	chr2	109768777	109769361	+	0	NA	Intergenic	Intergenic	46148	NM_001285422	12064	Mm.1442	NM_007540	ENSMUSG00000048482	Bdnf	-	brain derived neurotrophic factor	protein-coding
chipseq_peak_13604	chr9	59197515	59198319	+	0	NA	Intergenic	Intergenic	-93655	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding
chipseq_peak_10182	chr4	128399078	128399378	+	0	NA	intron (NM_001281955, intron 21 of 70)	intron (NM_001281955, intron 21 of 70)	138184	NR_130980	75242	Mm.488254	NR_130980		Hmgb4os	4930546G22Rik	high-mobility group box 4, opposite strand	ncRNA
chipseq_peak_11012	chr5	130938863	130939630	+	0	NA	intron (NM_145218, intron 6 of 10)	intron (NM_145218, intron 6 of 10)	368276	NM_145218	212996	Mm.299204	NM_145218		Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding
chipseq_peak_1514	chr10	45763274	45764305	+	0	NA	Intergenic	L1MB8|LINE|L1	-43915	NR_040624	320363	Mm.123343	NR_040624		D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA
chipseq_peak_5037	chr15	43364486	43365167	+	0	NA	Intergenic	Intergenic	-82090	NM_008388	16341	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding
chipseq_peak_6141	chr17	3259004	3259522	+	0	NA	Intergenic	Intergenic	-67310	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
chipseq_peak_12944	chr8	64320285	64320671	+	0	NA	Intergenic	Intergenic	-114485	NM_009390	21892	Mm.418367	NM_009390	ENSMUSG00000053626	Tll1	Tll|Tll-1	tolloid-like	protein-coding
chipseq_peak_5633	chr16	39819427	39820772	+	0	NA	Intergenic	Intergenic	917754	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_5638	chr16	40228456	40229264	+	0	NA	Intergenic	Intergenic	-1304482	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_12184	chr7	67390450	67390959	+	0	NA	Intergenic	L1ME4a|LINE|L1	-17846	NM_001291192	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding
chipseq_peak_1260	chr10	10106440	10107835	+	0	NA	Intergenic	Intergenic	-206097	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding
chipseq_peak_4930	chr15	27043712	27044314	+	0	NA	Intergenic	Intergenic	-148449	NM_176959	448987	Mm.253378	NM_176959		Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding
chipseq_peak_8852	chr3	69481906	69482278	+	0	NA	intron (NM_178726, intron 1 of 3)	intron (NM_178726, intron 1 of 3)	116868	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding
chipseq_peak_4746	chr14	121015368	121015673	+	0	NA	Intergenic	Intergenic	-20054	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding
chipseq_peak_12836	chr8	48765924	48766495	+	0	NA	Intergenic	Intergenic	-91519	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_2229	chr11	27730842	27731387	+	0	NA	Intergenic	Intergenic	853210	NM_181577	216613	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding
chipseq_peak_4556	chr14	93898454	93898807	+	0	NA	Intergenic	Intergenic	-7961	NM_001271798	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_5361	chr15	85402541	85403740	+	0	NA	intron (NM_016843, intron 9 of 11)	intron (NM_016843, intron 9 of 11)	66759	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding
chipseq_peak_13894	chr9	112454254	112455277	+	0	NA	Intergenic	Intergenic	198191	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_1861	chr10	99480605	99481013	+	0	NA	Intergenic	Intergenic	-128362	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA
chipseq_peak_10246	chr5	4993139	4993653	+	0	NA	intron (NM_001310448, intron 9 of 13)	intron (NM_001310448, intron 9 of 13)	-235180	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled homolog 1 (Drosophila)	protein-coding
chipseq_peak_6163	chr17	4907078	4907864	+	0	NA	Intergenic	Intergenic	-87603	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding
chipseq_peak_8323	chr2	152405908	152406347	+	0	NA	Intergenic	Intergenic	-8081	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding
chipseq_peak_9579	chr4	19731255	19731825	+	0	NA	Intergenic	Intergenic	-22536	NM_001276292	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
chipseq_peak_249	chr1	40896917	40898766	+	0	NA	Intergenic	Intergenic	92240	NM_001081198	381339	Mm.334678	NM_001081198		Tmem182	2310079P10Rik|AI414494	transmembrane protein 182	protein-coding
chipseq_peak_1358	chr10	25703731	25704435	+	0	NA	Intergenic	Intergenic	133354	NR_045349	73803	Mm.258921	NR_045349		4930401C15Rik	-	RIKEN cDNA 4930401C15 gene	ncRNA
chipseq_peak_11373	chr6	36590231	36591743	+	0	NA	Intergenic	Intergenic	169245	NR_030524	735279		NR_030524	ENSMUSG00000070075	Mir490	Mirn490|mir-490|mmu-mir-490	microRNA 490	ncRNA
chipseq_peak_9977	chr4	82392119	82392962	+	0	NA	intron (NM_001286131, intron 2 of 9)	intron (NM_001286131, intron 2 of 9)	113239	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding
chipseq_peak_11985	chr6	144076474	144077144	+	0	NA	intron (NM_001113559, intron 3 of 13)	intron (NM_001113559, intron 3 of 13)	132759	NM_011444	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
chipseq_peak_3750	chr13	81761781	81762296	+	0	NA	Intergenic	Intergenic	-21254	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_3978	chr13	103094230	103094523	+	0	NA	intron (NM_175171, intron 3 of 28)	intron (NM_175171, intron 3 of 28)	240116	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding
chipseq_peak_11250	chr6	18654260	18654628	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-139619	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_13468	chr9	40598381	40599119	+	0	NA	Intergenic	Intergenic	-87214	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding
chipseq_peak_7081	chr19	12154137	12155226	+	0	NA	intron (NR_030566, intron 2 of 3)	intron (NR_030566, intron 2 of 3)	-34007	NM_146682	258677	Mm.261576	NM_146682	ENSMUSG00000067522	Olfr76	MOR215-3|V5	olfactory receptor 76	protein-coding
chipseq_peak_9562	chr4	17535208	17535729	+	0	NA	Intergenic	Intergenic	-318014	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_6749	chr18	36222520	36223000	+	0	NA	Intergenic	Intergenic	-25600	NM_001167891	100042150	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding
chipseq_peak_12279	chr7	84282327	84282629	+	0	NA	intron (NM_007488, intron 10 of 18)	intron (NM_007488, intron 10 of 18)	127560	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding
chipseq_peak_7620	chr2	44179836	44180230	+	0	NA	intron (NM_001301832, intron 12 of 14)	intron (NM_001301832, intron 12 of 14)	-114709	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_6979	chr18	69592805	69593535	+	0	NA	intron (NM_001083967, intron 8 of 19)	(GA)n|Simple_repeat|Simple_repeat	247449	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
chipseq_peak_12531	chr7	130493285	130494024	+	0	NA	intron (NM_013799, intron 7 of 11)	intron (NM_013799, intron 7 of 11)	25926	NM_013799	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding
chipseq_peak_1352	chr10	25207492	25207964	+	0	NA	intron (NM_018747, intron 7 of 7)	PB1D7|SINE|Alu	91435	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding
chipseq_peak_11463	chr6	47277738	47278192	+	0	NA	intron (NM_001004357, intron 22 of 23)	intron (NM_001004357, intron 22 of 23)	33569	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_3794	chr13	83333584	83334344	+	0	NA	Intergenic	Intergenic	-170070	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_13128	chr8	100101901	100102429	+	0	NA	Intergenic	Intergenic	685491	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_832	chr1	137584012	137584654	+	0	NA	Intergenic	Intergenic	-382122	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA
chipseq_peak_3123	chr12	70242522	70242817	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	14828	NR_045174	414124	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA
chipseq_peak_12505	chr7	124855070	124855428	+	0	NA	Intergenic	MT2A|LTR|ERVL	-146314	NR_045907	73076	Mm.417827	NR_045907	ENSMUSG00000086254	3100003L05Rik	-	RIKEN cDNA 3100003L05 gene	ncRNA
chipseq_peak_1591	chr10	56116393	56116772	+	0	NA	3' UTR (NM_001163833, exon 2 of 2)	3' UTR (NM_001163833, exon 2 of 2)	9665	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding
chipseq_peak_3344	chr12	108433180	108433527	+	0	NA	intron (NM_001043335, intron 1 of 21)	intron (NM_001043335, intron 1 of 21)	10537	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding
chipseq_peak_2514	chr11	94036011	94036679	+	0	NA	intron (NM_001199203, intron 2 of 29)	intron (NM_001199203, intron 2 of 29)	-7860	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding
chipseq_peak_13535	chr9	49836336	49836635	+	0	NA	Intergenic	Intergenic	-37092	NM_001311065	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding
chipseq_peak_4392	chr14	69958012	69958315	+	0	NA	intron (NM_028560, intron 3 of 6)	L1ME3G|LINE|L1	117756	NM_028560	73523	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding
chipseq_peak_13587	chr9	56762075	56762449	+	0	NA	Intergenic	Intergenic	-77009	NM_181074	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
chipseq_peak_4171	chr14	17722624	17723349	+	0	NA	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	62026	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding
chipseq_peak_8735	chr3	54377459	54377998	+	0	NA	intron (NM_001198766, intron 16 of 20)	intron (NM_001198766, intron 16 of 20)	16621	NM_001198765	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding
chipseq_peak_10928	chr5	114743026	114743525	+	0	NA	intron (NM_019834, intron 13 of 18)	intron (NM_019834, intron 13 of 18)	23760	NR_105995	102465622		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA
chipseq_peak_6705	chr18	30592624	30592938	+	0	NA	Intergenic	L1_Rod|LINE|L1	319885	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_7747	chr2	57414749	57415288	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	176636	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding
chipseq_peak_13990	chrX	47820597	47820870	+	0	NA	intron (NM_001290708, intron 22 of 23)	intron (NM_001290708, intron 22 of 23)	71819	NM_053123	93761	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
chipseq_peak_1600	chr10	58323091	58324618	+	0	NA	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	388	NM_026148	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding
chipseq_peak_7082	chr19	12292721	12293989	+	0	NA	intron (NR_030566, intron 2 of 3)	RMER12C|LTR|ERVK	5775	NM_146687	258682	Mm.377636	NM_146687	ENSMUSG00000067513	Olfr1436	MOR214-2	olfactory receptor 1436	protein-coding
chipseq_peak_191	chr1	32830588	32831038	+	0	NA	Intergenic	Intergenic	-283520	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding
chipseq_peak_2964	chr12	50597541	50598632	+	0	NA	intron (NM_008858, intron 1 of 18)	intron (NM_008858, intron 1 of 18)	51137	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_1760	chr10	89194386	89195229	+	0	NA	intron (NR_102339, intron 1 of 26)	intron (NR_102339, intron 1 of 26)	62983	NM_001277188	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding
chipseq_peak_3373	chr12	119958332	119958706	+	0	NA	intron (NM_001294146, intron 1 of 3)	intron (NM_001294146, intron 1 of 3)	12557	NM_001294146	217951	Mm.387395	NM_001160385		Tmem196	Gm528	transmembrane protein 196	protein-coding
chipseq_peak_11427	chr6	42237225	42238126	+	0	NA	Intergenic	Intergenic	-8260	NM_029555	76263	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding
chipseq_peak_5823	chr16	62432920	62433647	+	0	NA	Intergenic	Intergenic	353433	NM_178925	106338	Mm.26321	NM_178925		Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding
chipseq_peak_9352	chr3	149151593	149151983	+	0	NA	Intergenic	Intergenic	-122949	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_13424	chr9	31010727	31011850	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-19356	NM_172765	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding
chipseq_peak_13385	chr9	27702149	27702565	+	0	NA	Intergenic	Intergenic	-88912	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_12099	chr7	50756504	50757057	+	0	NA	intron (NM_001037906, intron 15 of 19)	intron (NM_001037906, intron 15 of 19)	157590	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding
chipseq_peak_11350	chr6	33528674	33530067	+	0	NA	intron (NM_009148, intron 9 of 17)	L1Md_F2|LINE|L1	280220	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
chipseq_peak_2185	chr11	24077963	24078577	+	0	NA	5' UTR (NM_001159289, exon 1 of 5)	5' UTR (NM_001159289, exon 1 of 5)	214	NM_001242934	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding
chipseq_peak_1660	chr10	68059771	68061791	+	0	NA	Intergenic	Intergenic	81183	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding
chipseq_peak_5138	chr15	53525580	53526233	+	0	NA	intron (NM_177225, intron 4 of 4)	Tigger15a|DNA|TcMar-Tigger	-179723	NM_010162	14042	Mm.309395	NM_010162		Ext1	AA409028	exostoses (multiple) 1	protein-coding
chipseq_peak_1060	chr1	173032933	173033902	+	0	NA	Intergenic	L1MD1|LINE|L1	76649	NM_008763	18313	Mm.377103	NM_008763		Olfr16	MOR23|MOR26713	olfactory receptor 16	protein-coding
chipseq_peak_964	chr1	159564293	159565472	+	0	NA	intron (NM_022312, intron 1 of 22)	intron (NM_022312, intron 1 of 22)	41113	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding
chipseq_peak_460	chr1	66292222	66294197	+	0	NA	intron (NM_008632, intron 3 of 13)	L1_Mur3|LINE|L1	-28515	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding
chipseq_peak_2700	chr12	12605433	12605804	+	0	NA	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-213143	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
chipseq_peak_1602	chr10	58446370	58446808	+	0	NA	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-263	NM_011240	19386	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding
chipseq_peak_13325	chr9	16026025	16026435	+	0	NA	intron (NM_001080814, intron 5 of 24)	intron (NM_001080814, intron 5 of 24)	-151674	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
chipseq_peak_2020	chr10	116642593	116642909	+	0	NA	Intergenic	Intergenic	-61240	NM_028082	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding
chipseq_peak_14118	chrX	159931995	159932378	+	0	NA	intron (NM_021389, intron 11 of 16)	intron (NM_021389, intron 11 of 16)	-10507	NM_001290661	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding
chipseq_peak_10324	chr5	16869160	16869875	+	0	NA	Intergenic	Intergenic	315616	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
chipseq_peak_4288	chr14	48445761	48446068	+	0	NA	promoter-TSS (NR_132324)	promoter-TSS (NR_132324)	-209	NM_001310584	218989	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding
chipseq_peak_11080	chr5	141570215	141570952	+	0	NA	intron (NM_177879, intron 1 of 44)	Charlie1a|DNA|hAT-Charlie	329049	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick homolog 1 (chicken)	protein-coding
chipseq_peak_1631	chr10	65100861	65101689	+	0	NA	Intergenic	Intergenic	-1011020	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_13234	chr8	119309841	119310407	+	0	NA	intron (NM_019707, intron 11 of 13)	intron (NM_019707, intron 11 of 13)	-34414	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding
chipseq_peak_9346	chr3	148315372	148315724	+	0	NA	Intergenic	Intergenic	639087	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
chipseq_peak_13085	chr8	92335854	92336162	+	0	NA	intron (NR_110452, intron 3 of 3)	intron (NR_110452, intron 3 of 3)	20112	NR_033641	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA
chipseq_peak_10484	chr5	49419647	49420200	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-134264	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
chipseq_peak_11585	chr6	73795771	73796268	+	0	NA	Intergenic	MIRb|SINE|MIR	-324998	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA
chipseq_peak_9342	chr3	147092171	147093275	+	0	NA	Intergenic	Intergenic	240356	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding
chipseq_peak_12020	chr6	148504559	148505782	+	0	NA	Intergenic	Intergenic	-60818	NM_198967	387314	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chipseq_peak_10929	chr5	115052347	115052855	+	0	NA	intron (NM_029012, intron 1 of 10)	MER58A|DNA|hAT-Charlie	41077	NM_029012	74585	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding
chipseq_peak_2826	chr12	34371542	34372487	+	0	NA	3' UTR (NM_024124, exon 12 of 12)	3' UTR (NM_024124, exon 12 of 12)	156875	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
chipseq_peak_5904	chr16	70119623	70120038	+	0	NA	Intergenic	Intergenic	-194119	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding
chipseq_peak_10918	chr5	112453911	112455205	+	0	NA	intron (NM_001253917, intron 9 of 15)	intron (NM_001253917, intron 9 of 15)	5132	NM_001177504	625464	Mm.389676	NM_001177504	ENSMUSG00000072722	Gm6588	EG625464	predicted gene 6588	protein-coding
chipseq_peak_174	chr1	31452706	31454466	+	0	NA	Intergenic	Intergenic	188739	NR_015347	226957	Mm.25966	NR_015347		Gm4850	EG226957	THO complex 4 pseudogene	pseudo
chipseq_peak_7159	chr19	24218315	24219043	+	0	NA	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	6347	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding
chipseq_peak_6807	chr18	49012363	49012957	+	0	NA	Intergenic	Intergenic	-510629	NR_033785	67321	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA
chipseq_peak_9444	chr4	4779136	4779694	+	0	NA	intron (NM_177730, intron 1 of 4)	intron (NM_177730, intron 1 of 4)	13891	NM_177730	242291	Mm.218889	NM_177730		Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding
chipseq_peak_957	chr1	157990822	157991638	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	365030	NM_207583	240843	Mm.329579	NM_207583	ENSMUSG00000004031	Brinp2	6430517E21Rik|BB361039|Fam5b|mKIAA1747	bone morphogenic protein/retinoic acid inducible neural-specific 2	protein-coding
chipseq_peak_11384	chr6	36925821	36927058	+	0	NA	intron (NM_001081206, intron 24 of 33)	intron (NM_001081206, intron 24 of 33)	-115078	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_7154	chr19	23806853	23807442	+	0	NA	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	48271	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding
chipseq_peak_10831	chr5	98650129	98651118	+	0	NA	intron (NM_001024614, intron 3 of 5)	intron (NM_001024614, intron 3 of 5)	-174959	NR_030484	735265		NR_030484	ENSMUSG00000105814	Mir703	Mirn703|mir-703|mmu-mir-703	microRNA 703	ncRNA
chipseq_peak_4529	chr14	90801721	90802184	+	0	NA	Intergenic	L1_Mur3|LINE|L1	675061	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
chipseq_peak_3791	chr13	83271266	83271896	+	0	NA	Intergenic	Intergenic	-232453	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_9726	chr4	35917800	35918151	+	0	NA	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-72771	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_10162	chr4	124561857	124563041	+	0	NA	Intergenic	Intergenic	-6730	NR_045819	108809	Mm.250313	NR_045819		4933407E24Rik	-	RIKEN cDNA 4933407E24 gene	ncRNA
chipseq_peak_816	chr1	133307001	133307652	+	0	NA	Intergenic	Intergenic	-2497	NM_026680	68338	Mm.247935	NM_026680	ENSMUSG00000103421	Golt1a	0610012C01Rik|Kiss1|metastatin	golgi transport 1 homolog A (S. cerevisiae)	protein-coding
chipseq_peak_4825	chr15	14253575	14254684	+	0	NA	Intergenic	Intergenic	-1080454	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_6999	chr18	72032686	72033411	+	0	NA	intron (NM_007831, intron 1 of 28)	intron (NM_007831, intron 1 of 28)	318021	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
chipseq_peak_8294	chr2	143032449	143033070	+	0	NA	Intergenic	Intergenic	-30310	NM_021335	20639	Mm.1323	NM_021335		Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding
chipseq_peak_2346	chr11	49652906	49653156	+	0	NA	TTS (NM_008029)	TTS (NM_008029)	-10564	NM_170727	68662	Mm.22802	NM_054037	ENSMUSG00000064057	Scgb3a1	HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2	secretoglobin, family 3A, member 1	protein-coding
chipseq_peak_13533	chr9	49798919	49799751	+	0	NA	promoter-TSS (NM_001311065)	promoter-TSS (NM_001311065)	58	NM_001311065	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding
chipseq_peak_3736	chr13	78892213	78892613	+	0	NA	Intergenic	Intergenic	-693431	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding
chipseq_peak_7424	chr2	8057379	8058631	+	0	NA	Intergenic	Intergenic	-661807	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_5203	chr15	62681572	62682564	+	0	NA	Intergenic	Intergenic	-462617	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_13040	chr8	83942465	83943130	+	0	NA	TTS (NM_181039)	TTS (NM_181039)	-12897	NM_024184	66929	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding
chipseq_peak_1521	chr10	46057284	46057943	+	0	NA	Intergenic	Intergenic	-187135	NR_028274	100302593		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA
chipseq_peak_8019	chr2	99255470	99255764	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	1787960	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_3708	chr13	76194575	76195316	+	0	NA	Intergenic	Intergenic	96211	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	mKIAA0372	tetratricopeptide repeat domain 37	protein-coding
chipseq_peak_11019	chr5	131665053	131665566	+	0	NA	intron (NM_177047, intron 5 of 18)	intron (NM_177047, intron 5 of 18)	-214960	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_6900	chr18	58974282	58974821	+	0	NA	intron (NM_175506, intron 14 of 22)	intron (NM_175506, intron 14 of 22)	-87830	NR_033764	225583	Mm.209711	NM_173759	ENSMUSG00000050875	A730017C20Rik	-	RIKEN cDNA A730017C20 gene	protein-coding
chipseq_peak_1489	chr10	40448423	40448906	+	0	NA	intron (NM_001291817, intron 4 of 11)	intron (NM_001291817, intron 4 of 11)	99356	NM_198164	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding
chipseq_peak_8527	chr3	24485035	24487306	+	0	NA	Intergenic	Intergenic	1667137	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_7991	chr2	95029051	95029539	+	0	NA	Intergenic	Intergenic	-591109	NM_001305258	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding
chipseq_peak_1914	chr10	105615532	105615967	+	0	NA	Intergenic	Intergenic	41198	NR_038032	327812	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06|OTTMUSG00000025047	predicted gene 15663	ncRNA
chipseq_peak_6773	chr18	42510824	42511352	+	0	NA	promoter-TSS (NM_001039474)	promoter-TSS (NM_001039474)	-399	NR_110344	56070	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding
chipseq_peak_6009	chr16	75537693	75538919	+	0	NA	Intergenic	Intergenic	47755	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_4319	chr14	59836639	59837180	+	0	NA	intron (NM_015803, intron 26 of 35)	intron (NM_015803, intron 26 of 35)	211628	NM_145463	219134	Mm.275409	NM_145463	ENSMUSG00000044461	Shisa2	9430059P22Rik|MAd2|Tmem46|mShisa|shisa	shisa family member 2	protein-coding
chipseq_peak_1255	chr10	9641392	9642606	+	0	NA	intron (NM_177271, intron 1 of 1)	intron (NM_177271, intron 1 of 1)	33209	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
chipseq_peak_6462	chr17	81767076	81768900	+	0	NA	Intergenic	Intergenic	-29601	NM_001112798	20541	Mm.265834	NM_011406		Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
chipseq_peak_790	chr1	129969051	129969759	+	0	NA	intron (NM_172485, intron 15 of 27)	intron (NM_172485, intron 15 of 27)	453594	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding
chipseq_peak_11018	chr5	131546390	131546719	+	0	NA	intron (NM_177047, intron 5 of 18)	intron (NM_177047, intron 5 of 18)	-239032	NM_145218	212996	Mm.299204	NM_145218		Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding
chipseq_peak_6684	chr18	26941437	26942287	+	0	NA	Intergenic	Intergenic	-1187879	NM_001146294	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
chipseq_peak_9750	chr4	40014749	40015116	+	0	NA	Intergenic	Intergenic	-128333	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding
chipseq_peak_13926	chr9	113514985	113515469	+	0	NA	intron (NR_040760, intron 2 of 4)	intron (NR_040760, intron 2 of 4)	71925	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_8720	chr3	53702382	53703211	+	0	NA	Intergenic	Intergenic	-45441	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding
chipseq_peak_7238	chr19	37265637	37265983	+	0	NA	Intergenic	PB1D10|SINE|Alu	-1715	NR_040299	77059	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA
chipseq_peak_2519	chr11	96501031	96501421	+	0	NA	intron (NM_001033186, intron 2 of 12)	intron (NM_001033186, intron 2 of 12)	36635	NM_001177899	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding
chipseq_peak_10542	chr5	58025001	58025505	+	0	NA	intron (NM_001310608, intron 3 of 3)	intron (NM_001310608, intron 3 of 3)	307172	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding
chipseq_peak_13768	chr9	93992079	93992535	+	0	NA	Intergenic	Intergenic	545774	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
chipseq_peak_8588	chr3	33312449	33312781	+	0	NA	Intergenic	Intergenic	-169424	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding
chipseq_peak_12958	chr8	65713189	65714171	+	0	NA	intron (NM_175188, intron 1 of 7)	intron (NM_175188, intron 1 of 7)	95155	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
chipseq_peak_12816	chr8	46836169	46836534	+	0	NA	intron (NM_008391, intron 6 of 8)	L1MD2|LINE|L1	96606	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding
chipseq_peak_10223	chr4	150371000	150371802	+	0	NA	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	89485	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding
chipseq_peak_10514	chr5	54894668	54895171	+	0	NA	Intergenic	Intergenic	544927	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
chipseq_peak_3678	chr13	63332556	63332863	+	0	NA	intron (NM_007985, intron 8 of 14)	intron (NM_007985, intron 8 of 14)	-31426	NR_037235	100526474		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA
chipseq_peak_6672	chr18	24838696	24839600	+	0	NA	intron (NM_175276, intron 3 of 26)	intron (NM_175276, intron 3 of 26)	130525	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding
chipseq_peak_10396	chr5	35985753	35986073	+	0	NA	intron (NM_027373, intron 12 of 16)	intron (NM_027373, intron 12 of 16)	92594	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding
chipseq_peak_13542	chr9	50966468	50967442	+	0	NA	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	42118	NM_178710	235344	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding
chipseq_peak_7842	chr2	65929406	65933188	+	0	NA	promoter-TSS (NM_001290665)	promoter-TSS (NM_001290665)	-568	NM_001290665	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding
chipseq_peak_12857	chr8	53892204	53893840	+	0	NA	Intergenic	Intergenic	-184510	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
chipseq_peak_3204	chr12	78550948	78551304	+	0	NA	intron (NM_172952, intron 10 of 23)	intron (NM_172952, intron 10 of 23)	-140409	NM_027597	70897	Mm.56514	NM_027597	ENSMUSG00000056987	Fam71d	4921509E07Rik|4930516C23Rik|GARI-L2	family with sequence similarity 71, member D	protein-coding
chipseq_peak_9030	chr3	98915837	98916256	+	0	NA	Intergenic	Intergenic	-22816	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding
chipseq_peak_11325	chr6	31500478	31501200	+	0	NA	intron (NM_013791, intron 17 of 17)	L1MA4|LINE|L1	63098	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding
chipseq_peak_1089	chr1	176985680	176986450	+	0	NA	intron (NM_029756, intron 16 of 17)	intron (NM_029756, intron 16 of 17)	-149932	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_11612	chr6	77693939	77694945	+	0	NA	intron (NM_145732, intron 4 of 18)	intron (NM_145732, intron 4 of 18)	285225	NM_001109764	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding
chipseq_peak_11712	chr6	98285132	98285659	+	0	NA	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	57359	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_8426	chr3	3751622	3752455	+	0	NA	Intergenic	Intergenic	244008	NM_013920	30942	Mm.330897	NM_013920		Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding
chipseq_peak_10921	chr5	112910405	112911088	+	0	NA	3' UTR (NM_001285806, exon 21 of 21)	3' UTR (NM_001285806, exon 21 of 21)	-14384	NM_028901	74376	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding
chipseq_peak_7450	chr2	9926627	9927158	+	0	NA	intron (NM_027748, intron 4 of 6)	intron (NM_027748, intron 4 of 6)	-37352	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA
chipseq_peak_12609	chr8	8462338	8462786	+	0	NA	Intergenic	Intergenic	198211	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_9671	chr4	30841170	30841593	+	0	NA	intron (NR_040655, intron 6 of 6)	intron (NR_040655, intron 6 of 6)	176785	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
chipseq_peak_4477	chr14	82689282	82689866	+	0	NA	Intergenic	Intergenic	-1753989	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
chipseq_peak_2263	chr11	37474131	37474679	+	0	NA	Intergenic	Intergenic	-184584	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	OTTMUSG00000005422	predicted gene 12128	ncRNA
chipseq_peak_12940	chr8	62555919	62556240	+	0	NA	Intergenic	Intergenic	-395153	NM_001252621	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding
chipseq_peak_6098	chr16	89520453	89520966	+	0	NA	Intergenic	Intergenic	-12386	NM_027771	71363	Mm.158680	NM_027771	ENSMUSG00000056706	Krtap7-1	5430433J05Rik	keratin associated protein 7-1	protein-coding
chipseq_peak_3337	chr12	106687933	106688652	+	0	NA	intron (NR_015512, intron 7 of 7)	intron (NR_015512, intron 7 of 7)	28032	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA
chipseq_peak_3320	chr12	100337707	100338253	+	0	NA	intron (NM_001033213, intron 17 of 19)	intron (NM_001033213, intron 17 of 19)	61371	NR_045741	100038713	Mm.470751	NR_045741		Gm10432	ENSMUSG00000072882	predicted gene 10432	ncRNA
chipseq_peak_2806	chr12	32173009	32175159	+	0	NA	3' UTR (NM_020272, exon 11 of 11)	3' UTR (NM_020272, exon 11 of 11)	34254	NM_001146201	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding
chipseq_peak_1731	chr10	81605766	81606492	+	0	NA	promoter-TSS (NR_030677)	promoter-TSS (NR_030677)	-179	NR_030677	268319	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo
chipseq_peak_9415	chr3	155560592	155561203	+	0	NA	Intergenic	MER121|DNA|TcMar?	-415457	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
chipseq_peak_11039	chr5	132445159	132446037	+	0	NA	intron (NM_177047, intron 1 of 18)	intron (NM_177047, intron 1 of 18)	96745	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
chipseq_peak_4961	chr15	31602175	31602663	+	0	NA	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	303	NM_026546	68073	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding
chipseq_peak_11414	chr6	41266203	41266591	+	0	NA	Intergenic	Intergenic	-35875	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding
chipseq_peak_6296	chr17	51926539	51927668	+	0	NA	intron (NR_045095, intron 2 of 2)	L1M5|LINE|L1	44376	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA
chipseq_peak_80	chr1	20470332	20470652	+	0	NA	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	114038	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA
chipseq_peak_398	chr1	56779558	56781666	+	0	NA	Intergenic	Intergenic	-143161	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_244	chr1	40084225	40084504	+	0	NA	promoter-TSS (NM_010555)	promoter-TSS (NM_010555)	-404	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding
chipseq_peak_2758	chr12	26620406	26621612	+	0	NA	Intergenic	Intergenic	151794	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
chipseq_peak_11483	chr6	50105723	50106069	+	0	NA	Intergenic	Intergenic	-4345	NM_001164734	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding
chipseq_peak_13150	chr8	103109285	103110349	+	0	NA	Intergenic	L1ME3G|LINE|L1	237717	NR_036588	69794	Mm.396139	NR_036588		1600027J07Rik	-	RIKEN cDNA 1600027J07 gene	ncRNA
chipseq_peak_3582	chr13	45227786	45228388	+	0	NA	Intergenic	L1ME4c|LINE|L1	-161655	NM_153789	218203	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding
chipseq_peak_2068	chr10	123825517	123826112	+	0	NA	Intergenic	Intergenic	561738	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_586	chr1	86378780	86379264	+	0	NA	Intergenic	Intergenic	9119	NM_010341	14767	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding
chipseq_peak_7646	chr2	44733835	44734578	+	0	NA	intron (NM_172662, intron 5 of 10)	intron (NM_172662, intron 5 of 10)	127416	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_4859	chr15	19127248	19127956	+	0	NA	Intergenic	L1_Rod|LINE|L1	307273	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_9337	chr3	146380902	146381740	+	0	NA	Intergenic	Intergenic	-2377	NR_033542	100038607	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	ENSMUSG00000074175	predicted gene 10636	ncRNA
chipseq_peak_1458	chr10	37138805	37139807	+	0	NA	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	-380	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
chipseq_peak_4615	chr14	105664163	105665072	+	0	NA	Intergenic	Intergenic	-40847	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
chipseq_peak_8719	chr3	53686673	53686982	+	0	NA	Intergenic	Intergenic	-29472	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding
chipseq_peak_5567	chr16	27316319	27316970	+	0	NA	intron (NM_198112, intron 1 of 4)	intron (NM_198112, intron 1 of 4)	9003	NM_198112	239790	Mm.390880	NM_198112	ENSMUSG00000052276	Ostn	Ostc	osteocrin	protein-coding
chipseq_peak_4788	chr15	10306359	10306820	+	0	NA	intron (NM_001253782, intron 1 of 8)	intron (NM_001253782, intron 1 of 8)	12938	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding
chipseq_peak_8814	chr3	66049883	66050755	+	0	NA	Intergenic	Intergenic	-92094	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding
chipseq_peak_1639	chr10	66152771	66153136	+	0	NA	intron (NR_131070, intron 2 of 4)	intron (NR_131070, intron 2 of 4)	7657	NR_131070	77198	Mm.107617	NR_131070		4930407I19Rik	-	RIKEN cDNA 4930407I19 gene	ncRNA
chipseq_peak_12747	chr8	37370661	37371154	+	0	NA	Intergenic	Intergenic	-346669	NR_126063	414128	Mm.450976	NR_126063		G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA
chipseq_peak_5764	chr16	52378849	52379579	+	0	NA	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	73783	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
chipseq_peak_7352	chr2	3958440	3959431	+	0	NA	Intergenic	Intergenic	182206	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA
chipseq_peak_7905	chr2	76412856	76413969	+	0	NA	intron (NM_145525, intron 1 of 26)	intron (NM_145525, intron 1 of 26)	6904	NM_145525	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding
chipseq_peak_8220	chr2	136891713	136892148	+	0	NA	promoter-TSS (NM_021527)	promoter-TSS (NM_021527)	-333	NM_028834	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding
chipseq_peak_3591	chr13	45871346	45872138	+	0	NA	intron (NM_009124, intron 2 of 7)	intron (NM_009124, intron 2 of 7)	93249	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding
chipseq_peak_5402	chr15	94232595	94233737	+	0	NA	Intergenic	Intergenic	-14036	NR_045629	328594	Mm.135523	NR_045629		D630010B17Rik	Gm811	RIKEN cDNA D630010B17 gene	ncRNA
chipseq_peak_13100	chr8	96864432	96864859	+	0	NA	Intergenic	Intergenic	-318672	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_5215	chr15	63079584	63080044	+	0	NA	Intergenic	Intergenic	399794	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA
chipseq_peak_4084	chr13	113696710	113697441	+	0	NA	Intergenic	Intergenic	-33399	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding
chipseq_peak_5017	chr15	41054118	41055053	+	0	NA	intron (NM_011766, intron 5 of 7)	intron (NM_011766, intron 5 of 7)	-392897	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
chipseq_peak_9123	chr3	117731283	117732358	+	0	NA	Intergenic	Intergenic	137116	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_9104	chr3	116114474	116114939	+	0	NA	intron (NM_011693, intron 7 of 8)	intron (NM_011693, intron 7 of 8)	14982	NM_011693	22329	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding
chipseq_peak_3790	chr13	83141229	83143731	+	0	NA	Intergenic	Intergenic	-361554	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_8501	chr3	19157713	19158279	+	0	NA	intron (NM_028840, intron 1 of 6)	intron (NM_028840, intron 1 of 6)	5069	NM_028840	74252	Mm.200383	NM_028840		Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding
chipseq_peak_3158	chr12	74173774	74174521	+	0	NA	intron (NM_172804, intron 2 of 6)	intron (NM_172804, intron 2 of 6)	-110129	NR_030735	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA
chipseq_peak_12126	chr7	54648867	54649419	+	0	NA	Intergenic	Intergenic	-186102	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_8239	chr2	139948595	139948841	+	0	NA	intron (NM_175225, intron 9 of 13)	intron (NM_175225, intron 9 of 13)	118087	NM_001289611	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding
chipseq_peak_8574	chr3	29689508	29690208	+	0	NA	intron (NM_001167748, intron 11 of 12)	intron (NM_001167748, intron 11 of 12)	53114	NR_105796	102466637		NR_105796	ENSMUSG00000098315	Mir21b	Gm27951|mmu-mir-21b	microRNA 21b	ncRNA
chipseq_peak_4121	chr13	118731698	118732581	+	0	NA	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	17440	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding
chipseq_peak_10513	chr5	54819129	54819434	+	0	NA	Intergenic	L1MB3|LINE|L1	469289	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
chipseq_peak_8637	chr3	41158678	41159153	+	0	NA	Intergenic	Intergenic	-75869	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding
chipseq_peak_4702	chr14	115831384	115831813	+	0	NA	intron (NM_175500, intron 7 of 7)	intron (NM_175500, intron 7 of 7)	-422046	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA
chipseq_peak_11722	chr6	99333365	99333743	+	0	NA	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	-67039	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
chipseq_peak_3188	chr12	76992840	76993335	+	0	NA	Intergenic	Intergenic	-30839	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding
chipseq_peak_6861	chr18	55028640	55029860	+	0	NA	Intergenic	Intergenic	-39070	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_5450	chr15	102532001	102532731	+	0	NA	3' UTR (NM_001310067, exon 12 of 12)	3' UTR (NM_001310067, exon 12 of 12)	-7745	NM_018787	54615	Mm.445915	NM_018787	ENSMUSG00000023052	Npff	-	neuropeptide FF-amide peptide precursor	protein-coding
chipseq_peak_5234	chr15	65772182	65772488	+	0	NA	Intergenic	Intergenic	-14706	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
chipseq_peak_521	chr1	73115707	73116498	+	0	NA	Intergenic	Intergenic	91516	NR_038002	69449	Mm.250447	NR_038001	ENSMUSG00000101968	1700027A15Rik	-	RIKEN cDNA 1700027A15 gene	ncRNA
chipseq_peak_9135	chr3	117975184	117975828	+	0	NA	Intergenic	Intergenic	-106570	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_9294	chr3	140778434	140778872	+	0	NA	Intergenic	Intergenic	433702	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding
chipseq_peak_12521	chr7	128690053	128691588	+	0	NA	intron (NM_178641, intron 16 of 19)	intron (NM_178641, intron 16 of 19)	49609	NM_145955	210711	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	MCM (minichromosome maintenance deficient) binding protein	protein-coding
chipseq_peak_4974	chr15	32685239	32685509	+	0	NA	intron (NM_009154, intron 21 of 22)	intron (NM_009154, intron 21 of 22)	-235349	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding
chipseq_peak_4610	chr14	105333195	105333839	+	0	NA	Intergenic	Intergenic	74844	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding
chipseq_peak_13516	chr9	48017051	48017530	+	0	NA	Intergenic	Intergenic	-199082	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA
chipseq_peak_8858	chr3	70269382	70269806	+	0	NA	Intergenic	Intergenic	261981	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1 homolog (zebrafish)	protein-coding
chipseq_peak_1928	chr10	106354589	106356251	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-114890	NM_001205341	327814	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding
chipseq_peak_2213	chr11	26103611	26104861	+	0	NA	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-98004	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
chipseq_peak_11329	chr6	32373649	32374534	+	0	NA	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-137050	NR_040277	319849	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA
chipseq_peak_13271	chr9	3518563	3519564	+	0	NA	Intergenic	Intergenic	-13286	NM_001033322	234889	Mm.91240	NM_001033322		Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding
chipseq_peak_4188	chr14	21367168	21369933	+	0	NA	intron (NM_134079, intron 7 of 10)	L1MC5a|LINE|L1	-131220	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
chipseq_peak_1647	chr10	67063784	67064343	+	0	NA	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	32925	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding
chipseq_peak_7609	chr2	43902433	43904211	+	0	NA	intron (NM_001301832, intron 7 of 14)	intron (NM_001301832, intron 7 of 14)	154498	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_4782	chr15	8991074	8992490	+	0	NA	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	23833	NM_198024	223332	Mm.321371	NM_198024		Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding
chipseq_peak_7510	chr2	26091993	26092382	+	0	NA	5' UTR (NM_001037098, exon 1 of 6)	5' UTR (NM_001037098, exon 1 of 6)	209	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding
chipseq_peak_12675	chr8	17647544	17647970	+	0	NA	Intergenic	Intergenic	-112372	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
chipseq_peak_13854	chr9	105989389	105989910	+	0	NA	TTS (NM_026763)	TTS (NM_026763)	-29006	NM_001167923	665033	Mm.39826	NM_001167923	ENSMUSG00000091345	Col6a5	Col29a1|EG665033|Gm7455	collagen, type VI, alpha 5	protein-coding
chipseq_peak_7216	chr19	31188490	31189492	+	0	NA	intron (NM_011160, intron 3 of 17)	intron (NM_011160, intron 3 of 17)	27405	NR_002849	78103	Mm.445198	NR_002849		8430431K14Rik	-	RIKEN cDNA 8430431K14 gene	ncRNA
chipseq_peak_2316	chr11	42196010	42196811	+	0	NA	Intergenic	Intergenic	-13480	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding
chipseq_peak_2587	chr11	110732755	110733733	+	0	NA	Intergenic	Intergenic	-234789	NM_010604	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
chipseq_peak_10842	chr5	101959250	101959888	+	0	NA	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	110352	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding
chipseq_peak_3429	chr13	13703407	13704095	+	0	NA	intron (NM_010748, intron 31 of 52)	intron (NM_010748, intron 31 of 52)	-80308	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
chipseq_peak_13545	chr9	51066794	51068420	+	0	NA	intron (NM_001033534, intron 4 of 7)	intron (NM_001033534, intron 4 of 7)	9487	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding
chipseq_peak_6111	chr16	91906144	91908428	+	0	NA	intron (NM_010587, intron 35 of 38)	intron (NM_010587, intron 35 of 38)	24344	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
chipseq_peak_4437	chr14	77547892	77548375	+	0	NA	intron (NM_172813, intron 7 of 18)	intron (NM_172813, intron 7 of 18)	-41265	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA
chipseq_peak_5333	chr15	80100974	80101306	+	0	NA	intron (NM_009303, intron 1 of 3)	intron (NM_009303, intron 1 of 3)	9806	NM_207708	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding
chipseq_peak_5298	chr15	70594259	70594997	+	0	NA	Intergenic	Intergenic	670395	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_13932	chr9	115493856	115494174	+	0	NA	Intergenic	(TCCA)n|Simple_repeat|Simple_repeat	112196	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA
chipseq_peak_5842	chr16	63766991	63768137	+	0	NA	intron (NM_010140, intron 3 of 16)	intron (NM_010140, intron 3 of 16)	96593	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_13844	chr9	105289331	105289838	+	0	NA	intron (NM_172461, intron 11 of 15)	intron (NM_172461, intron 11 of 15)	105703	NM_172461	208583	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding
chipseq_peak_1699	chr10	71617191	71617833	+	0	NA	Intergenic	Intergenic	269719	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding
chipseq_peak_7964	chr2	83518505	83518987	+	0	NA	Intergenic	Intergenic	-125832	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
chipseq_peak_4744	chr14	120867176	120867659	+	0	NA	Intergenic	Intergenic	-43777	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding
chipseq_peak_2980	chr12	51187529	51188709	+	0	NA	Intergenic	Intergenic	-160111	NM_001167964	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding
chipseq_peak_474	chr1	68914765	68915110	+	0	NA	intron (NM_010154, intron 1 of 26)	intron (NM_010154, intron 1 of 26)	193122	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chipseq_peak_2893	chr12	41510531	41511013	+	0	NA	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-24715	NM_001271709	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_8399	chr2	170743561	170743888	+	0	NA	intron (NM_001163686, intron 1 of 7)	intron (NM_001163686, intron 1 of 7)	11917	NM_029761	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding
chipseq_peak_11605	chr6	77239963	77240780	+	0	NA	intron (NM_145732, intron 8 of 18)	intron (NM_145732, intron 8 of 18)	-2346	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_2572	chr11	108987158	108987771	+	0	NA	Intergenic	Intergenic	67115	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin2	protein-coding
chipseq_peak_7073	chr19	10784811	10785371	+	0	NA	intron (NR_027805, intron 2 of 3)	PB1D10|SINE|Alu	44144	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA
chipseq_peak_5572	chr16	28391278	28391871	+	0	NA	intron (NM_183064, intron 2 of 4)	intron (NM_183064, intron 2 of 4)	54501	NM_001276420	14167	Mm.7996	NM_010199		Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding
chipseq_peak_7590	chr2	43097672	43098434	+	0	NA	Intergenic	Intergenic	-444455	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding
chipseq_peak_12075	chr7	44382519	44383808	+	0	NA	promoter-TSS (NM_001114116)	promoter-TSS (NM_001114116)	-963	NM_016663	20981	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding
chipseq_peak_10702	chr5	79538264	79538801	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-22628	NR_035474	100316701		NR_035474	ENSMUSG00000089570	Mir669m-1	mmu-mir-669m-1	microRNA 669m-1	ncRNA
chipseq_peak_6311	chr17	54438382	54440561	+	0	NA	Intergenic	Intergenic	-69397	NR_045825	69418	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA
chipseq_peak_5961	chr16	73747433	73748139	+	0	NA	Intergenic	Intergenic	594281	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_13019	chr8	78233602	78234125	+	0	NA	intron (NM_183096, intron 5 of 13)	intron (NM_183096, intron 5 of 13)	20521	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding
chipseq_peak_9387	chr3	151605879	151606243	+	0	NA	Intergenic	Intergenic	143898	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding
chipseq_peak_5513	chr16	12800218	12801068	+	0	NA	Intergenic	Intergenic	-10747	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA
chipseq_peak_5247	chr15	66398512	66399001	+	0	NA	intron (NM_019457, intron 10 of 11)	intron (NM_019457, intron 10 of 11)	102154	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding
chipseq_peak_5428	chr15	95393150	95394146	+	0	NA	intron (NM_001289653, intron 10 of 20)	intron (NM_001289653, intron 10 of 20)	134604	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding
chipseq_peak_10470	chr5	46456204	46457017	+	0	NA	Intergenic	Intergenic	-524201	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA
chipseq_peak_9725	chr4	35898692	35899944	+	0	NA	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-54114	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_8567	chr3	29341643	29342749	+	0	NA	intron (NM_001167748, intron 4 of 12)	intron (NM_001167748, intron 4 of 12)	-74627	NR_030422	791072		NR_030422	ENSMUSG00000076120	Mir551b	Mirn551b|mir-551b	microRNA 551b	ncRNA
chipseq_peak_5903	chr16	70091240	70092546	+	0	NA	Intergenic	Intergenic	-222056	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding
chipseq_peak_13733	chr9	85609040	85609479	+	0	NA	Intergenic	Intergenic	140075	NM_001081282	108837	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding
chipseq_peak_4584	chr14	99748879	99750148	+	0	NA	Intergenic	Intergenic	400283	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
chipseq_peak_13082	chr8	91563334	91563742	+	0	NA	intron (NM_011936, intron 8 of 8)	MER102b|DNA|hAT-Charlie	238116	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding
chipseq_peak_418	chr1	57910178	57911468	+	0	NA	intron (NM_144882, intron 9 of 13)	intron (NM_144882, intron 9 of 13)	58701	NR_027630	51960	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding
chipseq_peak_7517	chr2	28867384	28867879	+	0	NA	intron (NM_001033294, intron 14 of 19)	intron (NM_001033294, intron 14 of 19)	27225	NM_001033294	227674	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding
chipseq_peak_3665	chr13	59201213	59201705	+	0	NA	Intergenic	Intergenic	342992	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding
chipseq_peak_4868	chr15	20031650	20032028	+	0	NA	Intergenic	Intergenic	634911	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_10556	chr5	61090263	61090961	+	0	NA	Intergenic	Intergenic	-718231	NM_019468	14380	Mm.347430	NM_019468		G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding
chipseq_peak_9744	chr4	39193125	39193551	+	0	NA	Intergenic	Intergenic	-256955	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
chipseq_peak_5704	chr16	46537654	46538406	+	0	NA	Intergenic	Intergenic	-41063	NM_021496	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
chipseq_peak_3153	chr12	74105293	74106153	+	0	NA	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	107962	NM_172804	238266	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding
chipseq_peak_5585	chr16	30683945	30684357	+	0	NA	Intergenic	Intergenic	84428	NM_177632	224093	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding
chipseq_peak_10698	chr5	78266181	78267475	+	0	NA	Intergenic	Intergenic	801340	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
chipseq_peak_10174	chr4	127442216	127443058	+	0	NA	Intergenic	RSINE1|SINE|B4	-84473	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding
chipseq_peak_2040	chr10	120533635	120534019	+	0	NA	Intergenic	Intergenic	-56892	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding
chipseq_peak_3870	chr13	90913055	90913985	+	0	NA	Intergenic	Intergenic	-8165	NM_001145879	435376	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
chipseq_peak_10404	chr5	38881789	38882571	+	0	NA	Intergenic	Intergenic	-5487	NM_013748	27278	Mm.440845	NM_013748	ENSMUSG00000039315	Clnk	MIST	cytokine-dependent hematopoietic cell linker	protein-coding
chipseq_peak_2015	chr10	116159824	116160184	+	0	NA	intron (NM_001161837, intron 1 of 12)	intron (NM_001161837, intron 1 of 12)	16106	NM_001161837	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding
chipseq_peak_3270	chr12	92909042	92909553	+	0	NA	Intergenic	Intergenic	535526	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA
chipseq_peak_899	chr1	145138983	145139484	+	0	NA	Intergenic	Intergenic	-363812	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding
chipseq_peak_5305	chr15	71243473	71244363	+	0	NA	Intergenic	Intergenic	483920	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
chipseq_peak_8775	chr3	57101718	57103202	+	0	NA	Intergenic	Intergenic	199459	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding
chipseq_peak_7303	chr19	53364713	53365230	+	0	NA	intron (NM_001008542, intron 3 of 5)	intron (NM_001008542, intron 3 of 5)	25602	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding
chipseq_peak_8194	chr2	134708966	134710080	+	0	NA	Intergenic	Intergenic	-65402	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
chipseq_peak_770	chr1	126700295	126700776	+	0	NA	intron (NM_176957, intron 1 of 12)	intron (NM_176957, intron 1 of 12)	130097	NM_176957	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding
chipseq_peak_3017	chr12	58095098	58096312	+	0	NA	Intergenic	Intergenic	-116099	NM_009216	20605	Mm.278336	NM_009216		Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding
chipseq_peak_13470	chr9	40731075	40731751	+	0	NA	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	45449	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding
chipseq_peak_11614	chr6	77838701	77839006	+	0	NA	intron (NM_145732, intron 3 of 18)	intron (NM_145732, intron 3 of 18)	140814	NM_001109764	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding
chipseq_peak_10579	chr5	63161543	63162700	+	0	NA	Intergenic	Intergenic	348298	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding
chipseq_peak_12315	chr7	90886916	90888143	+	0	NA	Intergenic	Intergenic	-203257	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_8737	chr3	54672611	54673209	+	0	NA	Intergenic	Intergenic	-20195	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding
chipseq_peak_8793	chr3	62278292	62278681	+	0	NA	Intergenic	Intergenic	-60291	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding
chipseq_peak_5237	chr15	65825720	65826019	+	0	NA	intron (NM_133766, intron 5 of 22)	intron (NM_133766, intron 5 of 22)	38828	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
chipseq_peak_7628	chr2	44353613	44354072	+	0	NA	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-288518	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_13907	chr9	113025864	113027220	+	0	NA	Intergenic	Intergenic	560610	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_9098	chr3	115454279	115454620	+	0	NA	Intergenic	Intergenic	260606	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding
chipseq_peak_10676	chr5	74511629	74511979	+	0	NA	intron (NM_001286437, intron 2 of 7)	intron (NM_001286437, intron 2 of 7)	19938	NM_178672	212986	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding
chipseq_peak_7370	chr2	5464158	5464758	+	0	NA	intron (NM_177343, intron 2 of 10)	intron (NM_177343, intron 2 of 10)	85068	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA
chipseq_peak_422	chr1	58221007	58222388	+	0	NA	intron (NM_023631, intron 4 of 34)	intron (NM_023631, intron 4 of 34)	11300	NM_023631	71872	Mm.244525	NM_023631	ENSMUSG00000038242	Aox4	2310003G12Rik|Aoh2	aldehyde oxidase 4	protein-coding
chipseq_peak_4841	chr15	17427481	17428044	+	0	NA	Intergenic	Intergenic	649661	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_730	chr1	118311283	118311742	+	0	NA	promoter-TSS (NM_011650)	promoter-TSS (NM_011650)	-380	NM_011650	22099	Mm.426637	NM_011650		Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding
chipseq_peak_9041	chr3	101623518	101623881	+	0	NA	Intergenic	Intergenic	-18992	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
chipseq_peak_4621	chr14	105744213	105744470	+	0	NA	Intergenic	Intergenic	-120571	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
chipseq_peak_2692	chr12	12318084	12318616	+	0	NA	intron (NM_029758, intron 3 of 12)	intron (NM_029758, intron 3 of 12)	56211	NM_001146119	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding
chipseq_peak_796	chr1	131293870	131294200	+	0	NA	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-14472	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding
chipseq_peak_9345	chr3	148167531	148168019	+	0	NA	Intergenic	Intergenic	786860	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
chipseq_peak_3842	chr13	85715516	85716874	+	0	NA	Intergenic	Intergenic	330600	NM_007749	12867	Mm.378898	NM_007749		Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding
chipseq_peak_142	chr1	27629041	27629559	+	0	NA	Intergenic	MER126|DNA|DNA	-941840	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding
chipseq_peak_8837	chr3	68201104	68201784	+	0	NA	intron (NM_001113420, intron 1 of 6)	Tigger5|DNA|TcMar-Tigger	136642	NM_001113421	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_336	chr1	52795816	52796511	+	0	NA	intron (NM_008384, intron 3 of 5)	intron (NM_008384, intron 3 of 5)	21525	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding
chipseq_peak_1808	chr10	94129600	94130281	+	0	NA	intron (NM_053072, intron 14 of 20)	intron (NM_053072, intron 14 of 20)	-17991	NM_011629	22025	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding
chipseq_peak_14103	chrX	157601525	157601845	+	0	NA	Intergenic	Intergenic	-2970	NM_172307	270669	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding
chipseq_peak_4571	chr14	96528590	96529176	+	0	NA	Intergenic	Intergenic	-9849	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
chipseq_peak_7457	chr2	11746378	11746715	+	0	NA	intron (NM_015792, intron 19 of 20)	intron (NM_015792, intron 19 of 20)	30981	NM_015792	50755	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding
chipseq_peak_4212	chr14	27862185	27863189	+	0	NA	intron (NM_177814, intron 3 of 15)	intron (NM_177814, intron 3 of 15)	240245	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding
chipseq_peak_411	chr1	57328673	57330572	+	0	NA	Intergenic	Intergenic	47922	NR_037999	75323	Mm.362968	NR_037999	ENSMUSG00000097519	4930558J18Rik	-	RIKEN cDNA 4930558J18 gene	ncRNA
chipseq_peak_11092	chr5	143809296	143810123	+	0	NA	Intergenic	L1MB7|LINE|L1	51355	NR_015486	320064	Mm.332820	NR_015486		D130017N08Rik	1700012G11Rik	RIKEN cDNA D130017N08 gene	ncRNA
chipseq_peak_12064	chr7	37149810	37150421	+	0	NA	Intergenic	Intergenic	451997	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding
chipseq_peak_4206	chr14	24857617	24858287	+	0	NA	Intergenic	L1M4|LINE|L1	285289	NR_045718	75862	Mm.109191	NR_045718		4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA
chipseq_peak_13978	chrX	39571037	39571378	+	0	NA	Intergenic	Intergenic	224941	NM_001177380	78631	Mm.243738	NM_001177380	ENSMUSG00000079619	Cypt15	1700085A12Rik	cysteine-rich perinuclear theca 15	protein-coding
chipseq_peak_10436	chr5	42522677	42525068	+	0	NA	Intergenic	Intergenic	455912	NR_131130	433882	Mm.319353	NR_131130		Gm16223	EG433882|OTTMUSG00000031875	predicted gene 16223	ncRNA
chipseq_peak_12835	chr8	48762907	48764892	+	0	NA	Intergenic	Intergenic	-89209	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_5134	chr15	53108376	53109505	+	0	NA	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	237243	NM_010162	14042	Mm.309395	NM_010162		Ext1	AA409028	exostoses (multiple) 1	protein-coding
chipseq_peak_13819	chr9	102326252	102326556	+	0	NA	intron (NM_173447, intron 1 of 15)	intron (NM_173447, intron 1 of 15)	-21429	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA
chipseq_peak_13062	chr8	88064524	88065026	+	0	NA	Intergenic	Intergenic	-53984	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding
chipseq_peak_1484	chr10	40258168	40259280	+	0	NA	Intergenic	Intergenic	-1059	NM_026113	67371	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding
chipseq_peak_8205	chr2	135278450	135279229	+	0	NA	intron (NM_019677, intron 9 of 32)	intron (NM_019677, intron 9 of 32)	-63223	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA
chipseq_peak_1549	chr10	50014948	50015402	+	0	NA	Intergenic	Intergenic	-226421	NM_010349	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding
chipseq_peak_1217	chr1	194202402	194202851	+	0	NA	Intergenic	Intergenic	20133	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_9529	chr4	13837118	13837707	+	0	NA	intron (NM_001111027, intron 3 of 11)	intron (NM_001111027, intron 3 of 11)	52630	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_4959	chr15	31091798	31092388	+	0	NA	Intergenic	Intergenic	52967	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA
chipseq_peak_5864	chr16	64748172	64748660	+	0	NA	Intergenic	Intergenic	22523	NM_026273	67609	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104	RIKEN cDNA 4930453N24 gene	protein-coding
chipseq_peak_4382	chr14	67820783	67821141	+	0	NA	intron (NM_177780, intron 15 of 51)	intron (NM_177780, intron 15 of 51)	38783	NR_105857	102465310		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA
chipseq_peak_7570	chr2	40400310	40400815	+	0	NA	Intergenic	Intergenic	-1174224	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding
chipseq_peak_12350	chr7	91919179	91919824	+	0	NA	intron (NM_011807, intron 6 of 22)	intron (NM_011807, intron 6 of 22)	-142893	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_11871	chr6	115492814	115493612	+	0	NA	Intergenic	Intergenic	-51491	NM_199033	381802	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease 2 homolog (S. cerevisiae)	protein-coding
chipseq_peak_8464	chr3	13385994	13386454	+	0	NA	Intergenic	Intergenic	-85431	NM_178631	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding
chipseq_peak_2974	chr12	51058683	51059374	+	0	NA	intron (NR_126468, intron 4 of 4)	intron (NR_126468, intron 4 of 4)	53872	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
chipseq_peak_10755	chr5	84632760	84635308	+	0	NA	Intergenic	Intergenic	-216652	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_8383	chr2	169599744	169600468	+	0	NA	Intergenic	Intergenic	-33540	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
chipseq_peak_10198	chr4	134444653	134445670	+	0	NA	Intergenic	Intergenic	5010	NR_045800	69409	Mm.226215	NR_045800	ENSMUSG00000087343	1700021N21Rik	-	RIKEN cDNA 1700021N21 gene	ncRNA
chipseq_peak_8667	chr3	47348254	47348988	+	0	NA	Intergenic	L3|LINE|CR1	-447839	NR_105800	102465199		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA
chipseq_peak_8922	chr3	79927082	79927610	+	0	NA	intron (NM_133187, intron 2 of 3)	L1MA4|LINE|L1	41416	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_9399	chr3	153484556	153485293	+	0	NA	intron (NM_011372, intron 2 of 4)	intron (NM_011372, intron 2 of 4)	-186275	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA
chipseq_peak_5300	chr15	70641107	70641421	+	0	NA	Intergenic	Intergenic	717031	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_10315	chr5	16133558	16136493	+	0	NA	intron (NM_009784, intron 3 of 37)	intron (NM_009784, intron 3 of 37)	200334	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_6609	chr18	18892196	18892973	+	0	NA	Intergenic	Intergenic	1109513	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_2216	chr11	26585497	26586395	+	0	NA	intron (NM_001252447, intron 2 of 11)	intron (NM_001252447, intron 2 of 11)	7974	NM_001252447	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding
chipseq_peak_10865	chr5	103926252	103927699	+	0	NA	Intergenic	Intergenic	-15746	NM_178741	246293	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding
chipseq_peak_10726	chr5	81974083	81974587	+	0	NA	Intergenic	Intergenic	824730	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
chipseq_peak_9143	chr3	118276465	118278847	+	0	NA	Intergenic	Intergenic	-156201	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA
chipseq_peak_6442	chr17	77102693	77103070	+	0	NA	Intergenic	Intergenic	-1097367	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
chipseq_peak_6515	chr17	90075067	90075923	+	0	NA	intron (NM_020252, intron 21 of 22)	intron (NM_020252, intron 21 of 22)	696254	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
chipseq_peak_13519	chr9	48216501	48216724	+	0	NA	Intergenic	Intergenic	124286	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding
chipseq_peak_13252	chr8	127038610	127039506	+	0	NA	Intergenic	Intergenic	-24998	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_7156	chr19	23867434	23868124	+	0	NA	intron (NM_177034, intron 1 of 12)	L1MC1|LINE|L1	108903	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding
chipseq_peak_2607	chr11	113150995	113151385	+	0	NA	intron (NR_015556, intron 1 of 2)	L1M2|LINE|L1	50648	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA
chipseq_peak_5603	chr16	34004199	34004570	+	0	NA	intron (NM_177357, intron 51 of 59)	intron (NM_177357, intron 51 of 59)	-37381	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding
chipseq_peak_12603	chr8	7958434	7958735	+	0	NA	Intergenic	Intergenic	702189	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_13007	chr8	76633191	76634230	+	0	NA	Intergenic	Intergenic	266463	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
chipseq_peak_11187	chr6	13156811	13157591	+	0	NA	Intergenic	PB1D10|SINE|Alu	67764	NM_001013757	232585	Mm.389082	NM_001013757	ENSMUSG00000079679	Vwde	Gm467	von Willebrand factor D and EGF domains	protein-coding
chipseq_peak_13744	chr9	88120446	88121320	+	0	NA	Intergenic	Intergenic	-206726	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding
chipseq_peak_7847	chr2	66041619	66042623	+	0	NA	Intergenic	Intergenic	82672	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
chipseq_peak_13685	chr9	75523677	75524306	+	0	NA	intron (NM_016963, intron 3 of 9)	intron (NM_016963, intron 3 of 9)	35666	NM_016963	50875	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding
chipseq_peak_13093	chr8	96455315	96456257	+	0	NA	Intergenic	Intergenic	90187	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_6055	chr16	79168188	79168531	+	0	NA	Intergenic	Intergenic	-77262	NM_178855	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
chipseq_peak_14021	chrX	65851632	65852222	+	0	NA	Intergenic	L1MC4a|LINE|L1	-797391	NM_001161431	245450	Mm.336081	NM_198863	ENSMUSG00000036790	Slitrk2	A930040J07	SLIT and NTRK-like family, member 2	protein-coding
chipseq_peak_688	chr1	106126564	106127223	+	0	NA	Intergenic	Intergenic	44631	NR_040630	626049	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA
chipseq_peak_387	chr1	56321324	56322455	+	0	NA	Intergenic	Intergenic	302911	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_6938	chr18	66851766	66852678	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	8265	NM_016977	17202	Mm.229447	NM_016977	ENSMUSG00000047259	Mc4r	Mc4-r	melanocortin 4 receptor	protein-coding
chipseq_peak_7244	chr19	38187077	38187911	+	0	NA	TTS (NM_001081075)	TTS (NM_001081075)	36638	NM_001081075	70567	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding
chipseq_peak_3852	chr13	89286724	89287185	+	0	NA	intron (NM_010103, intron 8 of 9)	intron (NM_010103, intron 8 of 9)	-253682	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding
chipseq_peak_5876	chr16	67001639	67002107	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	344755	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA
chipseq_peak_9701	chr4	32508692	32509507	+	0	NA	intron (NM_001109661, intron 2 of 4)	intron (NM_001109661, intron 2 of 4)	62563	NR_026843	414068	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA
chipseq_peak_1557	chr10	51617051	51617305	+	0	NA	intron (NM_153071, intron 4 of 5)	intron (NM_153071, intron 4 of 5)	14280	NM_153071	210198	Mm.221031	NM_153071	ENSMUSG00000019905	Gprc6a	-	G protein-coupled receptor, family C, group 6, member A	protein-coding
chipseq_peak_3740	chr13	79433107	79433401	+	0	NA	Intergenic	Intergenic	-1234272	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding
chipseq_peak_10110	chr4	104697490	104698023	+	0	NA	intron (NM_177259, intron 9 of 14)	intron (NM_177259, intron 9 of 14)	-68561	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding
chipseq_peak_3942	chr13	99079241	99080825	+	0	NA	intron (NR_045495, intron 3 of 5)	intron (NR_045495, intron 3 of 5)	7888	NR_045495	69603	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA
chipseq_peak_7388	chr2	7088553	7089961	+	0	NA	intron (NM_001110231, intron 3 of 15)	intron (NM_001110231, intron 3 of 15)	-7955	NM_001110230	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_9470	chr4	7198908	7199284	+	0	NA	Intergenic	Intergenic	-208373	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_9736	chr4	37556411	37556998	+	0	NA	Intergenic	L1M4|LINE|L1	-604960	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
chipseq_peak_2558	chr11	105836254	105836955	+	0	NA	intron (NM_181071, intron 9 of 25)	intron (NM_181071, intron 9 of 25)	107543	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding
chipseq_peak_1968	chr10	109906102	109906650	+	0	NA	intron (NM_001081035, intron 1 of 38)	intron (NM_001081035, intron 1 of 38)	93843	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding
chipseq_peak_2895	chr12	41670648	41672154	+	0	NA	intron (NM_053122, intron 5 of 6)	intron (NM_053122, intron 5 of 6)	-185344	NM_001271709	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_3979	chr13	103173728	103174156	+	0	NA	intron (NM_175171, intron 1 of 28)	intron (NM_175171, intron 1 of 28)	160550	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding
chipseq_peak_12655	chr8	16114281	16115671	+	0	NA	intron (NM_053171, intron 26 of 69)	intron (NM_053171, intron 26 of 69)	53862	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_6267	chr17	47010506	47011137	+	0	NA	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-289	NM_146078	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding
chipseq_peak_3011	chr12	57462953	57463442	+	0	NA	Intergenic	Intergenic	82924	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding
chipseq_peak_11725	chr6	99485087	99486059	+	0	NA	Intergenic	Intergenic	-50228	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
chipseq_peak_6899	chr18	58393613	58395475	+	0	NA	Intergenic	Intergenic	-161696	NM_001081072	225579	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding
chipseq_peak_4941	chr15	28663894	28664331	+	0	NA	Intergenic	Intergenic	460346	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
chipseq_peak_13367	chr9	26416149	26416585	+	0	NA	Intergenic	Intergenic	-317441	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding
chipseq_peak_6542	chr17	91897464	91898945	+	0	NA	Intergenic	Intergenic	-805402	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
chipseq_peak_7708	chr2	52777561	52778065	+	0	NA	Intergenic	Intergenic	-35664	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding
chipseq_peak_4006	chr13	107458866	107459550	+	0	NA	Intergenic	L1MC2|LINE|L1	-10614	NR_045083	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA
chipseq_peak_1323	chr10	19425171	19425624	+	0	NA	Intergenic	Intergenic	68858	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
chipseq_peak_4646	chr14	108804719	108807562	+	0	NA	Intergenic	Intergenic	108099	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_5646	chr16	40601960	40602396	+	0	NA	Intergenic	Intergenic	-931164	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_11357	chr6	33816510	33818173	+	0	NA	intron (NM_009148, intron 12 of 17)	L1MA7|LINE|L1	-212107	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding
chipseq_peak_5769	chr16	52568279	52568710	+	0	NA	Intergenic	Intergenic	-115497	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
chipseq_peak_693	chr1	106702651	106703600	+	0	NA	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	11165	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding
chipseq_peak_7694	chr2	50306607	50307254	+	0	NA	intron (NR_040362, intron 1 of 2)	intron (NR_040362, intron 1 of 2)	10120	NR_040361	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA
chipseq_peak_5348	chr15	83842829	83843200	+	0	NA	intron (NM_172610, intron 4 of 6)	(GA)n|Simple_repeat|Simple_repeat	62991	NM_172610	223726	Mm.36395	NM_172610	ENSMUSG00000041708	Mpped1	6230403M19|AW456965|D15Bwg0669e	metallophosphoesterase domain containing 1	protein-coding
chipseq_peak_8864	chr3	70801630	70802704	+	0	NA	intron (NR_040556, intron 1 of 3)	intron (NR_040556, intron 1 of 3)	5124	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
chipseq_peak_4537	chr14	92316395	92317238	+	0	NA	Intergenic	Intergenic	1572072	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_11439	chr6	44179337	44180426	+	0	NA	Intergenic	Intergenic	-513603	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
chipseq_peak_11759	chr6	103200358	103201918	+	0	NA	Intergenic	Intergenic	-309738	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_3690	chr13	69987956	69988548	+	0	NA	Intergenic	Intergenic	-33707	NR_131156	100042291	Mm.412604	NR_131156		Gm3772	-	predicted gene 3772	ncRNA
chipseq_peak_7085	chr19	14225000	14226136	+	0	NA	Intergenic	Intergenic	212938	NR_003027	19862		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA
chipseq_peak_990	chr1	162361887	162362489	+	0	NA	intron (NM_172646, intron 2 of 19)	intron (NM_172646, intron 2 of 19)	115842	NM_001038619	103967	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|mKIAA0820	dynamin 3	protein-coding
chipseq_peak_3058	chr12	62720824	62721884	+	0	NA	Intergenic	Intergenic	33567	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA
chipseq_peak_7532	chr2	32816832	32817213	+	0	NA	intron (NM_009295, intron 6 of 18)	intron (NM_009295, intron 6 of 18)	30210	NM_009295	20910	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding
chipseq_peak_8826	chr3	67769233	67769532	+	0	NA	Intergenic	Intergenic	-122838	NM_177585	208426	Mm.246568	NM_177585	ENSMUSG00000051777	Iqcj	D230050A05|EG208426	IQ motif containing J	protein-coding
chipseq_peak_7212	chr19	30842519	30843630	+	0	NA	intron (NM_011160, intron 5 of 17)	intron (NM_011160, intron 5 of 17)	87888	NR_033643	625995	Mm.454508	NR_033643		Gm6642	EG625995	ubiquitin-like 5 pseudogene	pseudo
chipseq_peak_1725	chr10	75979279	75979809	+	0	NA	intron (NM_198635, intron 6 of 13)	intron (NM_198635, intron 6 of 13)	25030	NM_198635	333669	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding
chipseq_peak_6713	chr18	30814501	30815481	+	0	NA	Intergenic	Intergenic	502137	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_67	chr1	18612691	18613021	+	0	NA	Intergenic	Intergenic	-347718	NM_001040027	654464	Mm.99530	NM_001040027		Gm15386	BD-17|BD-41|Defb17|Defb41|OTTMUSG00000020946|OTTMUSG00000020948|mBD-41	predicted gene 15386	protein-coding
chipseq_peak_12698	chr8	28829512	28830494	+	0	NA	intron (NM_153135, intron 4 of 17)	intron (NM_153135, intron 4 of 17)	389633	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_8896	chr3	77757888	77759312	+	0	NA	Intergenic	Intergenic	1386287	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_5135	chr15	53258025	53258621	+	0	NA	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	87860	NM_010162	14042	Mm.309395	NM_010162		Ext1	AA409028	exostoses (multiple) 1	protein-coding
chipseq_peak_9516	chr4	13259355	13260073	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	352877	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_6286	chr17	50763467	50763940	+	0	NA	intron (NM_028162, intron 18 of 21)	intron (NM_028162, intron 18 of 21)	65022	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding
chipseq_peak_13688	chr9	76646352	76647366	+	0	NA	Intergenic	L2a|LINE|L2	-101055	NM_001045518	208994	Mm.256929	NM_001045518	ENSMUSG00000032358	Fam83b	C530008M07Rik|Gm516	family with sequence similarity 83, member B	protein-coding
chipseq_peak_2199	chr11	25644998	25646654	+	0	NA	intron (NR_027973, intron 4 of 5)	intron (NR_027973, intron 4 of 5)	319719	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_8693	chr3	50983788	50984218	+	0	NA	Intergenic	Intergenic	-240444	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding
chipseq_peak_11613	chr6	77724563	77725929	+	0	NA	intron (NM_145732, intron 4 of 18)	intron (NM_145732, intron 4 of 18)	254421	NM_001109764	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding
chipseq_peak_2762	chr12	26783786	26784281	+	0	NA	Intergenic	Intergenic	314818	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
chipseq_peak_13213	chr8	114295082	114295485	+	0	NA	intron (NM_173016, intron 7 of 8)	intron (NM_173016, intron 7 of 8)	56195	NR_045831	71122	Mm.437539	NR_045831		4933408N05Rik	-	RIKEN cDNA 4933408N05 gene	ncRNA
chipseq_peak_8862	chr3	70533355	70534399	+	0	NA	Intergenic	Intergenic	273414	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
chipseq_peak_273	chr1	41822252	41823382	+	0	NA	Intergenic	Intergenic	-641565	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_2014	chr10	116038197	116038605	+	0	NA	intron (NM_011217, intron 1 of 13)	intron (NM_011217, intron 1 of 13)	20038	NM_011217	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding
chipseq_peak_1037	chr1	169421314	169422910	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	109352	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
chipseq_peak_6798	chr18	45945910	45946571	+	0	NA	intron (NR_040342, intron 2 of 3)	intron (NR_040342, intron 2 of 3)	99020	NR_040342	107003	Mm.395148	NR_040342		A330093E20Rik	AU043608	RIKEN cDNA A330093E20 gene	ncRNA
chipseq_peak_2370	chr11	60352759	60353523	+	0	NA	promoter-TSS (NM_001039092)	promoter-TSS (NM_001039092)	-236	NM_001039092	216810	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding
chipseq_peak_3463	chr13	19668399	19668905	+	0	NA	intron (NM_001167909, intron 11 of 14)	intron (NM_001167909, intron 11 of 14)	29108	NM_181591	73412	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding
chipseq_peak_2671	chr12	7798416	7798973	+	0	NA	Intergenic	L1M5|LINE|L1	-178983	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding
chipseq_peak_7511	chr2	26277959	26278299	+	0	NA	intron (NM_177841, intron 6 of 9)	L1MA6|LINE|L1	16428	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding
chipseq_peak_8301	chr2	143560550	143560963	+	0	NA	intron (NM_008792, intron 1 of 11)	intron (NM_008792, intron 1 of 11)	-12919	NR_040354	378776	Mm.381216	NR_040354	ENSMUSG00000086171	Pcsk2os1	C630020P19Rik	proprotein convertase subtilisin/kexin type 2, opposite strand 1	ncRNA
chipseq_peak_11405	chr6	40052467	40053655	+	0	NA	Intergenic	Intergenic	-57192	NM_001004182	434008	Mm.130209	NM_001004182	ENSMUSG00000057716	Tmem178b	EG434008|Gm5567	transmembrane protein 178B	protein-coding
chipseq_peak_1218	chr1	194230994	194231566	+	0	NA	Intergenic	Intergenic	-8521	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_39	chr1	11657607	11658057	+	0	NA	intron (NM_001310451, intron 7 of 12)	intron (NM_001310451, intron 7 of 12)	243727	NM_001160369	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding
chipseq_peak_6418	chr17	73075289	73075822	+	0	NA	Intergenic	L1MB7|LINE|L1	-32430	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding
chipseq_peak_13794	chr9	97623638	97624471	+	0	NA	intron (NM_022319, intron 2 of 17)	L1MB8|LINE|L1	-254096	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
chipseq_peak_8686	chr3	50083067	50083776	+	0	NA	Intergenic	Intergenic	-326105	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding
chipseq_peak_5584	chr16	30595826	30596236	+	0	NA	Intergenic	Intergenic	-3692	NM_177632	224093	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding
chipseq_peak_1614	chr10	59510182	59510474	+	0	NA	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	-68549	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding
chipseq_peak_12144	chr7	56055194	56056019	+	0	NA	intron (NM_010418, intron 2 of 92)	intron (NM_010418, intron 2 of 92)	5451	NM_010418	15204	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2	protein-coding
chipseq_peak_11880	chr6	117254837	117255266	+	0	NA	Intergenic	Intergenic	86516	NM_001012477	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding
chipseq_peak_13205	chr8	113299743	113301413	+	0	NA	Intergenic	L1ME3A|LINE|L1	-216704	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA
chipseq_peak_5385	chr15	91956355	91957634	+	0	NA	Intergenic	Intergenic	-94171	NM_001159648	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding
chipseq_peak_502	chr1	71506019	71507406	+	0	NA	Intergenic	Intergenic	-50444	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding
chipseq_peak_442	chr1	63369096	63369904	+	0	NA	Intergenic	Intergenic	-76391	NM_011780	23792	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding
chipseq_peak_10120	chr4	106048116	106048401	+	0	NA	Intergenic	MIR|SINE|MIR	-267955	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding
chipseq_peak_1027	chr1	168561415	168561945	+	0	NA	Intergenic	L1M4c|LINE|L1	71037	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA
chipseq_peak_5240	chr15	66115131	66116179	+	0	NA	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-138851	NM_001145096	654498	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding
chipseq_peak_8074	chr2	109147256	109147520	+	0	NA	intron (NM_029790, intron 3 of 5)	Lx8b|LINE|L1	130902	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding
chipseq_peak_3722	chr13	77319437	77319754	+	0	NA	intron (NM_001145676, intron 15 of 19)	Charlie7|DNA|hAT-Charlie	184059	NM_001145676	72371	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding
chipseq_peak_6364	chr17	64511367	64511809	+	0	NA	Intergenic	Intergenic	44002	NR_045899	100043582	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA
chipseq_peak_8232	chr2	138896708	138897468	+	0	NA	Intergenic	Intergenic	77159	NR_035477	100316816		NR_035477	ENSMUSG00000088983	Mir1952	mmu-mir-1952	microRNA 1952	ncRNA
chipseq_peak_6026	chr16	76950253	76951787	+	0	NA	Intergenic	Intergenic	59861	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA
chipseq_peak_3427	chr13	12141944	12142475	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-35264	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding
chipseq_peak_13996	chrX	51539464	51540331	+	0	NA	intron (NM_001077202, intron 2 of 4)	intron (NM_001077202, intron 2 of 4)	140580	NM_015819	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding
chipseq_peak_5874	chr16	66811488	66811938	+	0	NA	intron (NM_178721, intron 5 of 9)	intron (NM_178721, intron 5 of 9)	154595	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA
chipseq_peak_6345	chr17	62821171	62821631	+	0	NA	intron (NM_207654, intron 1 of 4)	intron (NM_207654, intron 1 of 4)	59916	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_11410	chr6	40432260	40432892	+	0	NA	intron (NM_175528, intron 1 of 7)	intron (NM_175528, intron 1 of 7)	3557	NM_175528	243780	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding
chipseq_peak_12736	chr8	36150552	36150881	+	0	NA	Intergenic	Intergenic	55888	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	D8Ertd82e	9830148H23|NACK|Sgk223|mFLJ00269	DNA segment, Chr 8, ERATO Doi 82, expressed	protein-coding
chipseq_peak_12925	chr8	59522215	59523462	+	0	NA	Intergenic	Intergenic	-302811	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
chipseq_peak_1833	chr10	97339911	97340144	+	0	NA	Intergenic	Intergenic	-83451	NR_039547	100628616		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA
chipseq_peak_5766	chr16	52497993	52499346	+	0	NA	Intergenic	Intergenic	-45672	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
chipseq_peak_6959	chr18	68129707	68131710	+	0	NA	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	130265	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA
chipseq_peak_2696	chr12	12490192	12490704	+	0	NA	Intergenic	L1M2|LINE|L1	-97973	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
chipseq_peak_11173	chr6	12213800	12215152	+	0	NA	Intergenic	Intergenic	-104896	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo
chipseq_peak_13106	chr8	97723225	97723500	+	0	NA	Intergenic	Intergenic	-1177389	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_10076	chr4	101026475	101027811	+	0	NA	Intergenic	Intergenic	-41895	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding
chipseq_peak_11848	chr6	111022072	111022494	+	0	NA	intron (NM_177328, intron 2 of 9)	intron (NM_177328, intron 2 of 9)	376685	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_3050	chr12	61670845	61671494	+	0	NA	intron (NM_001310586, intron 2 of 5)	intron (NM_001310586, intron 2 of 5)	148002	NM_178714	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
chipseq_peak_14009	chrX	59166642	59167243	+	0	NA	promoter-TSS (NM_001290415)	promoter-TSS (NM_001290415)	-854	NM_001290415	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding
chipseq_peak_9752	chr4	40103230	40103579	+	0	NA	Intergenic	Intergenic	-39861	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding
chipseq_peak_10516	chr5	55514235	55514605	+	0	NA	Intergenic	Intergenic	1164428	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
chipseq_peak_9435	chr3	158559624	158560381	+	0	NA	intron (NM_001081358, intron 1 of 27)	intron (NM_001081358, intron 1 of 27)	2219	NM_001291452	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding
chipseq_peak_7599	chr2	43722585	43723141	+	0	NA	Intergenic	Intergenic	-25961	NM_153820	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_5772	chr16	52892897	52893226	+	0	NA	Intergenic	Intergenic	-77317	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA
chipseq_peak_6315	chr17	55083448	55084038	+	0	NA	Intergenic	Intergenic	-361974	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding
chipseq_peak_6918	chr18	64886961	64887518	+	0	NA	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-517	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding
chipseq_peak_11580	chr6	72667051	72667496	+	0	NA	intron (NM_009332, intron 3 of 11)	intron (NM_009332, intron 3 of 11)	37442	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA
chipseq_peak_4761	chr14	124195682	124196125	+	0	NA	intron (NM_207667, intron 1 of 4)	intron (NM_207667, intron 1 of 4)	-3357	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding
chipseq_peak_2772	chr12	27668792	27670827	+	0	NA	Intergenic	Intergenic	-327091	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding
chipseq_peak_1767	chr10	89976325	89977672	+	0	NA	intron (NM_001128086, intron 1 of 24)	intron (NM_001128086, intron 1 of 24)	103489	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_6366	chr17	64666480	64667097	+	0	NA	exon (NM_008549, exon 7 of 22)	exon (NM_008549, exon 7 of 22)	65139	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding
chipseq_peak_4450	chr14	79606943	79607714	+	0	NA	intron (NM_026474, intron 8 of 12)	intron (NM_026474, intron 8 of 12)	19637	NM_026474	67955	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding
chipseq_peak_10442	chr5	44175469	44175762	+	0	NA	3' UTR (NM_173764, exon 14 of 14)	3' UTR (NM_173764, exon 14 of 14)	50991	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding
chipseq_peak_2311	chr11	41953392	41954188	+	0	NA	intron (NM_177408, intron 6 of 8)	intron (NM_177408, intron 6 of 8)	46924	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding
chipseq_peak_12486	chr7	120712061	120712499	+	0	NA	intron (NM_001164580, intron 1 of 2)	L1M2|LINE|L1	-27277	NM_177697	233813	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding
chipseq_peak_1258	chr10	9978938	9979403	+	0	NA	Intergenic	Intergenic	-78130	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding
chipseq_peak_1844	chr10	98399857	98400122	+	0	NA	Intergenic	Intergenic	-48122	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA
chipseq_peak_13097	chr8	96679519	96681424	+	0	NA	Intergenic	Intergenic	-134498	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_4883	chr15	21109251	21111678	+	0	NA	promoter-TSS (NM_001008420)	promoter-TSS (NM_001008420)	-988	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
chipseq_peak_8905	chr3	78647930	78648727	+	0	NA	Intergenic	Intergenic	496559	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_3518	chr13	29604076	29604487	+	0	NA	intron (NR_131896, intron 9 of 16)	intron (NR_131896, intron 9 of 16)	251392	NM_144536	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
chipseq_peak_10708	chr5	80392852	80394198	+	0	NA	Intergenic	Intergenic	-628068	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_8702	chr3	52706195	52706759	+	0	NA	Intergenic	Intergenic	-33247	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA
chipseq_peak_5832	chr16	63116301	63117072	+	0	NA	Intergenic	Intergenic	262379	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
chipseq_peak_5162	chr15	57722079	57722786	+	0	NA	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	27765	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding
chipseq_peak_13852	chr9	105928550	105929554	+	0	NA	intron (NM_001167923, intron 7 of 40)	intron (NM_001167923, intron 7 of 40)	31591	NM_001167923	665033	Mm.39826	NM_001167923	ENSMUSG00000091345	Col6a5	Col29a1|EG665033|Gm7455	collagen, type VI, alpha 5	protein-coding
chipseq_peak_8682	chr3	49970824	49971589	+	0	NA	Intergenic	RSINE1|SINE|B4	-213890	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding
chipseq_peak_6955	chr18	67989479	67989916	+	0	NA	intron (NM_172631, intron 1 of 5)	Tigger10|DNA|TcMar-Tigger	56440	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding
chipseq_peak_4844	chr15	17889372	17889809	+	0	NA	Intergenic	Intergenic	480037	NR_045711	70886	Mm.399021	NR_045711		4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA
chipseq_peak_12272	chr7	82923584	82924306	+	0	NA	Intergenic	Intergenic	47446	NR_045855	71285	Mm.76818	NR_045855		4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA
chipseq_peak_8235	chr2	139311189	139311969	+	0	NA	Intergenic	Intergenic	-182341	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding
chipseq_peak_13726	chr9	84784820	84786035	+	0	NA	Intergenic	Intergenic	11029	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA
chipseq_peak_12471	chr7	117238364	117238676	+	0	NA	Intergenic	Intergenic	-142459	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_9682	chr4	31369997	31370528	+	0	NA	Intergenic	Intergenic	-593845	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_7571	chr2	40402323	40402894	+	0	NA	Intergenic	RMER6C|LTR|ERVK	-1176270	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding
chipseq_peak_5068	chr15	44823659	44824120	+	0	NA	Intergenic	Intergenic	-35826	NM_176998	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_10156	chr4	124198804	124199221	+	0	NA	Intergenic	Intergenic	281579	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding
chipseq_peak_13700	chr9	78176546	78177268	+	0	NA	intron (NR_040401, intron 2 of 3)	intron (NR_040401, intron 2 of 3)	993	NR_040401	320295	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA
chipseq_peak_6164	chr17	4963977	4964435	+	0	NA	Intergenic	Intergenic	-30868	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding
chipseq_peak_11223	chr6	16458242	16459301	+	0	NA	Intergenic	Intergenic	439670	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding
chipseq_peak_3001	chr12	54060736	54060991	+	0	NA	intron (NM_013780, intron 9 of 11)	intron (NM_013780, intron 9 of 11)	143011	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding
chipseq_peak_487	chr1	70479673	70480442	+	0	NA	intron (NM_029160, intron 15 of 16)	intron (NM_029160, intron 15 of 16)	-245658	NM_177164	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_6627	chr18	19955259	19955943	+	0	NA	Intergenic	Intergenic	46496	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_2622	chr11	118858034	118858775	+	0	NA	intron (NM_001285437, intron 1 of 13)	intron (NM_001285437, intron 1 of 13)	51168	NM_001039168	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding
chipseq_peak_13049	chr8	86192303	86192656	+	0	NA	Intergenic	Intergenic	351477	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding
chipseq_peak_233	chr1	38730017	38730733	+	0	NA	Intergenic	Intergenic	90840	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding
chipseq_peak_8033	chr2	102003319	102004277	+	0	NA	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	117536	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding
chipseq_peak_7995	chr2	95891529	95892411	+	0	NA	Intergenic	Intergenic	-426199	NM_001289743	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_4008	chr13	107540098	107541531	+	0	NA	Intergenic	Intergenic	70992	NR_045084	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA
chipseq_peak_1918	chr10	105954108	105955671	+	0	NA	Intergenic	Intergenic	113410	NM_025602	52713	Mm.339224	NM_025602		Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding
chipseq_peak_8486	chr3	18163207	18164535	+	0	NA	intron (NM_007825, intron 1 of 5)	intron (NM_007825, intron 1 of 5)	79467	NM_007825	13123	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding
chipseq_peak_4756	chr14	123314572	123315536	+	0	NA	intron (NM_177393, intron 26 of 43)	intron (NM_177393, intron 26 of 43)	145868	NR_045143	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
chipseq_peak_1431	chr10	32051546	32053243	+	0	NA	intron (NM_001013411, intron 3 of 6)	intron (NM_001013411, intron 3 of 6)	-442669	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
chipseq_peak_417	chr1	57875187	57876075	+	0	NA	intron (NM_144882, intron 4 of 13)	intron (NM_144882, intron 4 of 13)	30060	NM_001164566	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding
chipseq_peak_3135	chr12	71624002	71624376	+	0	NA	Intergenic	Intergenic	83582	NR_045941	73815	Mm.416916	NR_045941		4930404H11Rik	-	RIKEN cDNA 4930404H11 gene	ncRNA
chipseq_peak_8451	chr3	10307605	10307935	+	0	NA	Intergenic	Intergenic	-6587	NM_029310	75497	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding
chipseq_peak_3142	chr12	71969218	71969616	+	0	NA	intron (NM_001286452, intron 16 of 24)	intron (NM_001286452, intron 16 of 24)	79874	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding
chipseq_peak_2952	chr12	49960486	49965842	+	0	NA	Intergenic	Intergenic	-482302	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_12096	chr7	50162498	50162908	+	0	NA	intron (NM_001037906, intron 4 of 19)	intron (NM_001037906, intron 4 of 19)	187353	NM_001037906	338352	Mm.383528	NM_001037906	ENSMUSG00000055409	Nell1	B230343H07Rik|l7R6	NEL-like 1	protein-coding
chipseq_peak_8926	chr3	80200862	80202279	+	0	NA	Intergenic	L1Md_F2|LINE|L1	315640	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_13135	chr8	101187145	101189397	+	0	NA	Intergenic	Intergenic	1596840	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_2184	chr11	24073921	24074787	+	0	NA	Intergenic	Intergenic	-3702	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding
chipseq_peak_1042	chr1	170158866	170159316	+	0	NA	intron (NM_001305046, intron 3 of 9)	intron (NM_001305046, intron 3 of 9)	15873	NM_133806	107652	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
chipseq_peak_6697	chr18	29814621	29815993	+	0	NA	Intergenic	Intergenic	-318891	NR_045391	78058	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA
chipseq_peak_6921	chr18	65854190	65855900	+	0	NA	Intergenic	Intergenic	-18441	NM_175012	225642	Mm.20298	NM_175012	ENSMUSG00000024517	Grp	BLP	gastrin releasing peptide	protein-coding
chipseq_peak_10075	chr4	100945278	100946320	+	0	NA	intron (NM_198037, intron 4 of 26)	intron (NM_198037, intron 4 of 26)	-123239	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding
chipseq_peak_8398	chr2	170691532	170691930	+	0	NA	Intergenic	Intergenic	-40076	NM_001163686	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding
chipseq_peak_8240	chr2	140159194	140159562	+	0	NA	intron (NM_001081090, intron 5 of 13)	intron (NM_001081090, intron 5 of 13)	11180	NM_001081090	66580	Mm.21228	NM_001081090	ENSMUSG00000045624	Esf1	2610101J03Rik|ABTAP|AW545818|C79684	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	protein-coding
chipseq_peak_4837	chr15	17006115	17008129	+	0	NA	Intergenic	Intergenic	229021	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_5124	chr15	52505408	52505699	+	0	NA	Intergenic	Intergenic	-206892	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
chipseq_peak_12690	chr8	26677541	26677968	+	0	NA	Intergenic	Intergenic	146669	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA
chipseq_peak_1091	chr1	177015199	177016579	+	0	NA	intron (NM_029756, intron 17 of 17)	intron (NM_029756, intron 17 of 17)	-179756	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_9374	chr3	150816814	150817323	+	0	NA	Intergenic	Intergenic	-620814	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_9582	chr4	19921032	19921396	+	0	NA	intron (NM_175406, intron 1 of 7)	intron (NM_175406, intron 1 of 7)	1352	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding
chipseq_peak_7639	chr2	44564861	44565612	+	0	NA	3' UTR (NM_172662, exon 11 of 11)	3' UTR (NM_172662, exon 11 of 11)	296386	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_10221	chr4	150343294	150343633	+	0	NA	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	61547	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding
chipseq_peak_416	chr1	57609156	57609653	+	0	NA	Intergenic	Intergenic	-165457	NM_144882	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding
chipseq_peak_3044	chr12	60663062	60663726	+	0	NA	Intergenic	Intergenic	858426	NR_045049	100504101	Mm.235026	NR_045049		Gm20063	-	predicted gene, 20063	ncRNA
chipseq_peak_1658	chr10	67995604	67996589	+	0	NA	intron (NM_001081346, intron 2 of 12)	intron (NM_001081346, intron 2 of 12)	16498	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding
chipseq_peak_11295	chr6	24721676	24722274	+	0	NA	Intergenic	Intergenic	-11270	NM_028920	74409	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding
chipseq_peak_11332	chr6	32795943	32796864	+	0	NA	intron (NM_025336, intron 7 of 7)	intron (NM_025336, intron 7 of 7)	-208211	NM_175750	243743	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding
chipseq_peak_6825	chr18	51984321	51984844	+	0	NA	Intergenic	Intergenic	138964	NR_029788	723830		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA
chipseq_peak_9803	chr4	53438354	53438790	+	0	NA	Intergenic	Intergenic	-1841	NM_133891	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding
chipseq_peak_3015	chr12	58055896	58056791	+	0	NA	Intergenic	L1MB3|LINE|L1	-155461	NM_009216	20605	Mm.278336	NM_009216		Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding
chipseq_peak_13287	chr9	7216172	7216636	+	0	NA	Intergenic	Intergenic	31838	NM_029775	76863	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding
chipseq_peak_3450	chr13	16745005	16746377	+	0	NA	Intergenic	Intergenic	731216	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_11231	chr6	17154620	17155482	+	0	NA	Intergenic	Intergenic	-42700	NR_102305	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA
chipseq_peak_1239	chr10	8227807	8228570	+	0	NA	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	-272065	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
chipseq_peak_13388	chr9	27889081	27889713	+	0	NA	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	98128	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_13022	chr8	79081169	79081871	+	0	NA	intron (NM_001294279, intron 4 of 14)	intron (NM_001294279, intron 4 of 14)	53083	NM_178267	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding
chipseq_peak_8951	chr3	81760400	81761548	+	0	NA	Intergenic	Intergenic	-171642	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
chipseq_peak_3214	chr12	81316150	81316417	+	0	NA	intron (NM_080440, intron 1 of 7)	intron (NM_080440, intron 1 of 7)	16897	NM_001167920	110893	Mm.443748	NM_080440	ENSMUSG00000079055	Slc8a3	AW742262|Ncx3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding
chipseq_peak_3528	chr13	34274368	34274741	+	0	NA	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	70628	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding
chipseq_peak_9203	chr3	124320258	124321028	+	0	NA	promoter-TSS (NM_146140)	promoter-TSS (NM_146140)	-394	NM_146140	229801	Mm.165810	NM_146140		Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding
chipseq_peak_7387	chr2	7070795	7071124	+	0	NA	intron (NM_001110231, intron 3 of 15)	intron (NM_001110231, intron 3 of 15)	10343	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_446	chr1	63876489	63877244	+	0	NA	Intergenic	Intergenic	-87861	NR_027824	433315	Mm.342696	NM_001013800	ENSMUSG00000044689	Gm13749	OTTMUSG00000013918	predicted gene 13749	ncRNA
chipseq_peak_3475	chr13	21717349	21717684	+	0	NA	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	-112	NM_178206	319152	Mm.377874	NM_178206	ENSMUSG00000101355	Hist1h3h	H3-291	histone cluster 1, H3h	protein-coding
chipseq_peak_3232	chr12	82932687	82933524	+	0	NA	non-coding (NR_046045, exon 3 of 3)	non-coding (NR_046045, exon 3 of 3)	6050	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA
chipseq_peak_1548	chr10	49984968	49985765	+	0	NA	Intergenic	Intergenic	-196612	NM_010349	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding
chipseq_peak_1671	chr10	68668791	68670386	+	0	NA	Intergenic	Intergenic	-54158	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding
chipseq_peak_859	chr1	140548761	140549113	+	0	NA	intron (NM_001081027, intron 21 of 27)	intron (NM_001081027, intron 21 of 27)	107465	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_7714	chr2	53710868	53711788	+	0	NA	Intergenic	Intergenic	374224	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
chipseq_peak_12221	chr7	74709019	74709636	+	0	NA	Intergenic	Intergenic	-154547	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding
chipseq_peak_12043	chr7	25658410	25659321	+	0	NA	promoter-TSS (NM_007533)	promoter-TSS (NM_007533)	-104	NM_007533	12039	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding
chipseq_peak_2222	chr11	26807281	26808548	+	0	NA	Intergenic	Intergenic	22806	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_6475	chr17	83378665	83379413	+	0	NA	intron (NM_199466, intron 1 of 20)	intron (NM_199466, intron 1 of 20)	28108	NM_199466	78798	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding
chipseq_peak_4518	chr14	88981906	88982233	+	0	NA	Intergenic	Intergenic	-510673	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_8850	chr3	69285111	69285734	+	0	NA	Intergenic	Intergenic	-31496	NM_178726	242083	Mm.40577	NM_178726		Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding
chipseq_peak_584	chr1	84522775	84523270	+	0	NA	intron (NM_152915, intron 5 of 12)	Charlie1|DNA|hAT-Charlie	-172817	NR_039588	100628595		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA
chipseq_peak_11797	chr6	105482954	105484291	+	0	NA	non-coding (NR_040297, exon 3 of 3)	non-coding (NR_040297, exon 3 of 3)	9046	NR_040297	100503536	Mm.366960	NR_040297	ENSMUSG00000108237	Gm19757	-	predicted gene, 19757	ncRNA
chipseq_peak_13734	chr9	85693790	85694233	+	0	NA	intron (NM_001081282, intron 26 of 28)	intron (NM_001081282, intron 26 of 28)	55323	NM_001081282	108837	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding
chipseq_peak_12238	chr7	75847940	75848370	+	0	NA	promoter-TSS (NM_029652)	promoter-TSS (NM_029652)	-183	NM_182782	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding
chipseq_peak_13789	chr9	97507924	97509010	+	0	NA	intron (NM_022319, intron 8 of 17)	intron (NM_022319, intron 8 of 17)	-138509	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
chipseq_peak_10692	chr5	77837749	77838844	+	0	NA	Intergenic	Intergenic	372808	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
chipseq_peak_5205	chr15	62753452	62754001	+	0	NA	Intergenic	Intergenic	-534275	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_23	chr1	9172061	9172580	+	0	NA	intron (NM_001290390, intron 2 of 20)	intron (NM_001290390, intron 2 of 20)	127557	NM_001290393	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
chipseq_peak_719	chr1	114196148	114196530	+	0	NA	Intergenic	Intergenic	-1488798	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_83	chr1	21563533	21564624	+	0	NA	intron (NM_001310477, intron 2 of 12)	intron (NM_001310477, intron 2 of 12)	180522	NM_001113187	98582	Mm.326336	NM_001113187	ENSMUSG00000085079	Khdc1b	AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c	KH domain containing 1B	protein-coding
chipseq_peak_1724	chr10	75872555	75873281	+	0	NA	Intergenic	RLTR12G|LTR|ERVK	-12668	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding
chipseq_peak_9134	chr3	117966462	117969285	+	0	NA	Intergenic	Intergenic	-98937	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_6235	chr17	32022934	32023712	+	0	NA	intron (NM_028902, intron 2 of 7)	intron (NM_028902, intron 2 of 7)	11185	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding
chipseq_peak_3990	chr13	105014774	105015182	+	0	NA	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	39952	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding
chipseq_peak_10521	chr5	56187421	56187783	+	0	NA	Intergenic	Intergenic	1530317	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_6695	chr18	29638194	29638780	+	0	NA	Intergenic	Intergenic	-142071	NR_045391	78058	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA
chipseq_peak_6857	chr18	54820870	54821849	+	0	NA	Intergenic	Intergenic	168821	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_12589	chr8	6884484	6887216	+	0	NA	Intergenic	Intergenic	1774923	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_11492	chr6	51586037	51586648	+	0	NA	intron (NM_001127348, intron 5 of 6)	intron (NM_001127348, intron 5 of 6)	41819	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding
chipseq_peak_2807	chr12	32194024	32194433	+	0	NA	intron (NM_001146200, intron 8 of 10)	intron (NM_001146200, intron 8 of 10)	14110	NM_001146201	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding
chipseq_peak_4043	chr13	109670774	109672466	+	0	NA	intron (NM_011056, intron 3 of 16)	ORSL-2b|DNA|hAT-Tip100	-232189	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
chipseq_peak_11300	chr6	25726515	25727095	+	0	NA	Intergenic	Intergenic	-36825	NM_010338	14763	Mm.409670	NM_010338		Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding
chipseq_peak_14106	chrX	158053672	158054123	+	0	NA	Intergenic	Intergenic	-10700	NM_001310719	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding
chipseq_peak_10815	chr5	97533525	97534153	+	0	NA	intron (NR_045981, intron 3 of 7)	intron (NR_045981, intron 3 of 7)	-76831	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding
chipseq_peak_12015	chr6	148259843	148260919	+	0	NA	intron (NM_198967, intron 13 of 19)	L4_A_Mam|LINE|RTE-X	-48007	NM_026168	67456	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding
chipseq_peak_3166	chr12	74326447	74327302	+	0	NA	Intergenic	HERV16-int|LTR|ERVL	29400	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding
chipseq_peak_10418	chr5	40153948	40154933	+	0	NA	Intergenic	Intergenic	-509809	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_11654	chr6	92346206	92347930	+	0	NA	Intergenic	Intergenic	-102418	NM_009426	22044	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding
chipseq_peak_3728	chr13	77959602	77960748	+	0	NA	intron (NM_001163419, intron 7 of 9)	intron (NM_001163419, intron 7 of 9)	-64727	NM_029315	75507	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding
chipseq_peak_9366	chr3	149928293	149929910	+	0	NA	Intergenic	Intergenic	654364	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_9495	chr4	12230863	12231250	+	0	NA	Intergenic	Intergenic	-59041	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
chipseq_peak_10026	chr4	88209309	88210402	+	0	NA	intron (NM_001081184, intron 11 of 43)	intron (NM_001081184, intron 11 of 43)	87815	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA
chipseq_peak_10202	chr4	138463026	138463432	+	0	NA	Intergenic	Intergenic	8081	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding
chipseq_peak_4851	chr15	18748321	18749193	+	0	NA	Intergenic	Intergenic	-70190	NM_001316758	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_2144	chr11	14087412	14088758	+	0	NA	intron (NR_131011, intron 2 of 3)	intron (NR_131011, intron 2 of 3)	90956	NR_131011	75280	Mm.108492	NR_131011		4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA
chipseq_peak_10801	chr5	91996938	91997536	+	0	NA	Intergenic	Intergenic	9764	NM_001177577	381651	Mm.332494	NM_001177577	ENSMUSG00000096035	Gm1045	Gm1045-a|Gm1045-b	predicted gene 1045	protein-coding
chipseq_peak_9229	chr3	129076227	129076594	+	0	NA	Intergenic	Intergenic	-123468	NM_001286942	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding
chipseq_peak_3125	chr12	70397463	70398313	+	0	NA	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	-50274	NM_001286386	94090	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding
chipseq_peak_11964	chr6	140698028	140698407	+	0	NA	Intergenic	Intergenic	71332	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding
chipseq_peak_2488	chr11	87442506	87444150	+	0	NA	intron (NM_031386, intron 2 of 30)	U3|snRNA|snRNA	15737	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding
chipseq_peak_7529	chr2	30093137	30094127	+	0	NA	promoter-TSS (NM_025428)	promoter-TSS (NM_025428)	3	NM_001037762	66220	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding
chipseq_peak_10785	chr5	89728158	89728588	+	0	NA	intron (NM_177872, intron 4 of 21)	intron (NM_177872, intron 4 of 21)	111937	NR_037571	631105	Mm.7732	NR_037571		Gm7056	Gm149	predicted gene 7056	ncRNA
chipseq_peak_7300	chr19	52525325	52526123	+	0	NA	Intergenic	Intergenic	261427	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding
chipseq_peak_13358	chr9	24467310	24467892	+	0	NA	intron (NM_172920, intron 6 of 21)	intron (NM_172920, intron 6 of 21)	35539	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding
chipseq_peak_13526	chr9	48776067	48776651	+	0	NA	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	59586	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding
chipseq_peak_159	chr1	30590570	30591310	+	0	NA	Intergenic	Intergenic	272316	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
chipseq_peak_7558	chr2	37978977	37979698	+	0	NA	intron (NM_146122, intron 11 of 21)	intron (NM_146122, intron 11 of 21)	203088	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding
chipseq_peak_1366	chr10	26890481	26890852	+	0	NA	intron (NM_176837, intron 12 of 14)	intron (NM_176837, intron 12 of 14)	118154	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
chipseq_peak_8561	chr3	28555920	28556280	+	0	NA	intron (NM_001163007, intron 8 of 31)	intron (NM_001163007, intron 8 of 31)	136157	NR_130342	100628591		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA
chipseq_peak_11566	chr6	63824353	63824938	+	0	NA	intron (NM_008167, intron 2 of 15)	intron (NM_008167, intron 2 of 15)	567788	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
chipseq_peak_11742	chr6	101550177	101551505	+	0	NA	Intergenic	Intergenic	-172944	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
chipseq_peak_4102	chr13	116417708	116418059	+	0	NA	Intergenic	Intergenic	-108195	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding
chipseq_peak_5835	chr16	63179119	63180727	+	0	NA	Intergenic	Intergenic	325616	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
chipseq_peak_1749	chr10	86705537	86706297	+	0	NA	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	106	NM_001003910	103220	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding
chipseq_peak_9600	chr4	23463466	23464812	+	0	NA	Intergenic	L1ME2|LINE|L1	973591	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
chipseq_peak_6658	chr18	23566180	23566528	+	0	NA	intron (NM_207650, intron 4 of 20)	intron (NM_207650, intron 4 of 20)	68872	NM_001285808	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding
chipseq_peak_6688	chr18	28852013	28852624	+	0	NA	intron (NR_045398, intron 2 of 4)	intron (NR_045398, intron 2 of 4)	292154	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA
chipseq_peak_9850	chr4	65767449	65767805	+	0	NA	intron (NM_207109, intron 11 of 22)	intron (NM_207109, intron 11 of 22)	162641	NM_001161782	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding
chipseq_peak_12739	chr8	36426748	36427251	+	0	NA	Intergenic	Intergenic	-62192	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding
chipseq_peak_8798	chr3	62722559	62723166	+	0	NA	Intergenic	Intergenic	-117722	NM_177346	229357	Mm.95181	NM_177346		Gpr149	9630018L10Rik|Ieda|PGR10|R35	G protein-coupled receptor 149	protein-coding
chipseq_peak_410	chr1	57300827	57302695	+	0	NA	Intergenic	Intergenic	75783	NR_037999	75323	Mm.362968	NR_037999	ENSMUSG00000097519	4930558J18Rik	-	RIKEN cDNA 4930558J18 gene	ncRNA
chipseq_peak_7136	chr19	22450774	22451909	+	0	NA	intron (NM_177341, intron 1 of 26)	intron (NM_177341, intron 1 of 26)	3133	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding
chipseq_peak_9812	chr4	54129380	54130301	+	0	NA	Intergenic	Intergenic	303795	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding
chipseq_peak_1646	chr10	67056060	67057056	+	0	NA	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	40430	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding
chipseq_peak_9840	chr4	59670037	59671407	+	0	NA	intron (NM_001015681, intron 1 of 3)	intron (NM_001015681, intron 1 of 3)	44511	NM_001015681	230259	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding
chipseq_peak_12155	chr7	58027497	58027864	+	0	NA	Intergenic	Intergenic	436507	NM_008071	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding
chipseq_peak_8152	chr2	124357710	124358140	+	0	NA	intron (NM_001290997, intron 3 of 20)	intron (NM_001290997, intron 3 of 20)	-135567	NR_040612	75946	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA
chipseq_peak_13272	chr9	4536549	4537716	+	0	NA	intron (NM_001113180, intron 5 of 16)	intron (NM_001113180, intron 5 of 16)	153595	NM_145609	78100	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding
chipseq_peak_10123	chr4	107163935	107164425	+	0	NA	intron (NM_025617, intron 3 of 4)	intron (NM_025617, intron 3 of 4)	14186	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding
chipseq_peak_6443	chr17	77154960	77155262	+	0	NA	Intergenic	Intergenic	-1045137	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
chipseq_peak_8371	chr2	164007947	164008336	+	0	NA	intron (NM_018753, intron 1 of 5)	intron (NM_018753, intron 1 of 5)	12944	NM_018753	54401	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding
chipseq_peak_12143	chr7	55744475	55745038	+	0	NA	Intergenic	Intergenic	-23428	NM_001310740	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding
chipseq_peak_5839	chr16	63466618	63466970	+	0	NA	Intergenic	Intergenic	397363	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_13577	chr9	54536836	54537765	+	0	NA	Intergenic	7SK|RNA|RNA	-1684	NM_173778	244885	Mm.358924	NM_173778	ENSMUSG00000046460	Sh2d7	4933412E14Rik	SH2 domain containing 7	protein-coding
chipseq_peak_4904	chr15	22984578	22985075	+	0	NA	Intergenic	Intergenic	-51637	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_11520	chr6	55543271	55544029	+	0	NA	Intergenic	Intergenic	91672	NM_001025372	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding
chipseq_peak_2463	chr11	83956506	83957127	+	0	NA	intron (NM_030096, intron 12 of 14)	intron (NM_030096, intron 12 of 14)	-7615	NM_194341	217030	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding
chipseq_peak_8002	chr2	96763286	96764240	+	0	NA	intron (NM_001289742, intron 2 of 7)	intron (NM_001289742, intron 2 of 7)	445594	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_7139	chr19	22627544	22627966	+	0	NA	intron (NM_177341, intron 1 of 26)	intron (NM_177341, intron 1 of 26)	-64864	NM_001035244	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding
chipseq_peak_1532	chr10	47132001	47132581	+	0	NA	Intergenic	Intergenic	887542	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA
chipseq_peak_11548	chr6	60870229	60870475	+	0	NA	Intergenic	Intergenic	-40497	NM_009221	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding
chipseq_peak_6116	chr16	93971164	93971561	+	0	NA	intron (NM_019500, intron 1 of 2)	intron (NM_019500, intron 1 of 2)	37475	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding
chipseq_peak_3421	chr13	10057110	10058044	+	0	NA	intron (NM_033269, intron 3 of 4)	Charlie1a|DNA|hAT-Charlie	-292263	NM_144516	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding
chipseq_peak_3129	chr12	70696243	70696943	+	0	NA	Intergenic	L1ME2|LINE|L1	-128921	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding
chipseq_peak_550	chr1	78860335	78860741	+	0	NA	Intergenic	Intergenic	43589	NM_021342	57814	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding
chipseq_peak_11498	chr6	51882649	51883361	+	0	NA	intron (NM_018773, intron 9 of 12)	intron (NM_018773, intron 9 of 12)	129544	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding
chipseq_peak_13262	chr8	127724549	127725493	+	0	NA	Intergenic	Intergenic	425369	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_8855	chr3	69953689	69954406	+	0	NA	Intergenic	Charlie24|DNA|hAT-Charlie	-53566	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1 homolog (zebrafish)	protein-coding
chipseq_peak_691	chr1	106607696	106608395	+	0	NA	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-61414	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA
chipseq_peak_8989	chr3	85159615	85161620	+	0	NA	Intergenic	Intergenic	-156902	NR_040542	73283	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA
chipseq_peak_7758	chr2	58029295	58029761	+	0	NA	intron (NM_172855, intron 7 of 9)	intron (NM_172855, intron 7 of 9)	23224	NM_029972	77767	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding
chipseq_peak_7197	chr19	28579903	28580570	+	0	NA	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-97988	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_10377	chr5	29244716	29245079	+	0	NA	intron (NM_020295, intron 15 of 16)	L1MEg|LINE|L1	48904	NM_021470	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding
chipseq_peak_2431	chr11	77871449	77872658	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	21819	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding
chipseq_peak_696	chr1	107985803	107986254	+	0	NA	Intergenic	Intergenic	68769	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
chipseq_peak_6039	chr16	77759729	77761321	+	0	NA	Intergenic	Intergenic	114252	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_12082	chr7	49145970	49146538	+	0	NA	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-99935	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
chipseq_peak_8043	chr2	104317263	104318118	+	0	NA	intron (NM_001033347, intron 1 of 20)	L1MB8|LINE|L1	92644	NM_001033347	241589	Mm.358909	NM_001033347	ENSMUSG00000068373	D430041D05Rik	9630056G07Rik|G2	RIKEN cDNA D430041D05 gene	protein-coding
chipseq_peak_607	chr1	91759899	91760463	+	0	NA	Intergenic	Intergenic	-41280	NM_007855	13345	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding
chipseq_peak_3365	chr12	119062229	119063585	+	0	NA	Intergenic	Intergenic	-96486	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding
chipseq_peak_10482	chr5	49337011	49337602	+	0	NA	Intergenic	Intergenic	-51647	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
chipseq_peak_8066	chr2	107999306	108000843	+	0	NA	Intergenic	Intergenic	709485	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_4957	chr15	30647890	30648260	+	0	NA	intron (NM_008729, intron 7 of 22)	intron (NM_008729, intron 7 of 22)	-391051	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA
chipseq_peak_5845	chr16	63862309	63864812	+	0	NA	intron (NM_010140, intron 1 of 16)	intron (NM_010140, intron 1 of 16)	597	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_3245	chr12	86565927	86566244	+	0	NA	Intergenic	Intergenic	-112615	NM_177354	238328	Mm.216101	NM_177354		Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding
chipseq_peak_2452	chr11	81486068	81487090	+	0	NA	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	86960	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding
chipseq_peak_13747	chr9	90280104	90280427	+	0	NA	Intergenic	ORSL-2b|DNA|hAT-Tip100	-9496	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding
chipseq_peak_4801	chr15	12613903	12614509	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-21650	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding
chipseq_peak_10758	chr5	84848794	84849198	+	0	NA	Intergenic	Intergenic	-431614	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_1577	chr10	53925364	53925941	+	0	NA	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	150144	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding
chipseq_peak_13471	chr9	40982617	40982887	+	0	NA	intron (NM_001281954, intron 6 of 9)	intron (NM_001281954, intron 6 of 9)	-18640	NM_001081121	70989	Mm.335087	NM_001081121	ENSMUSG00000032023	4931429I11Rik	BB239335|jhy	RIKEN cDNA 4931429I11 gene	protein-coding
chipseq_peak_4678	chr14	114163982	114164210	+	0	NA	Intergenic	Intergenic	-667869	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_6643	chr18	22403416	22403876	+	0	NA	intron (NM_001167777, intron 3 of 12)	intron (NM_001167777, intron 3 of 12)	58557	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3 (Drosophila)	protein-coding
chipseq_peak_5612	chr16	36779606	36780336	+	0	NA	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	4991	NM_021301	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding
chipseq_peak_3425	chr13	11212428	11213018	+	0	NA	Intergenic	Intergenic	-309329	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo
chipseq_peak_11573	chr6	65126110	65126413	+	0	NA	intron (NM_019455, intron 4 of 5)	intron (NM_019455, intron 4 of 5)	18469	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding
chipseq_peak_13846	chr9	105377946	105378320	+	0	NA	intron (NM_172461, intron 2 of 15)	L1ME4b|LINE|L1	17154	NM_172461	208583	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding
chipseq_peak_11491	chr6	51553267	51553561	+	0	NA	intron (NM_028035, intron 1 of 6)	intron (NM_028035, intron 1 of 6)	8891	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding
chipseq_peak_5828	chr16	62863683	62864167	+	0	NA	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	9618	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
chipseq_peak_11809	chr6	106638612	106639477	+	0	NA	intron (NM_173004, intron 15 of 19)	intron (NM_173004, intron 15 of 19)	109993	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding
chipseq_peak_13947	chr9	120449796	120450311	+	0	NA	intron (NM_144557, intron 11 of 16)	intron (NM_144557, intron 11 of 16)	-42553	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding
chipseq_peak_10539	chr5	57865959	57866983	+	0	NA	intron (NM_001310608, intron 1 of 3)	L2a|LINE|L2	148390	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding
chipseq_peak_7795	chr2	61655796	61656780	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-55406	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding
chipseq_peak_1876	chr10	100629849	100630194	+	0	NA	Intergenic	Intergenic	37635	NM_001081246	66605	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding
chipseq_peak_8658	chr3	46031019	46031522	+	0	NA	Intergenic	Intergenic	416671	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding
chipseq_peak_11714	chr6	98418193	98419911	+	0	NA	Intergenic	Intergenic	-76298	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_12672	chr8	17596616	17597088	+	0	NA	Intergenic	Intergenic	-61467	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
chipseq_peak_501	chr1	71418491	71418797	+	0	NA	Intergenic	Intergenic	-3734	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
chipseq_peak_699	chr1	108181471	108182087	+	0	NA	Intergenic	Intergenic	264520	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
chipseq_peak_11026	chr5	131814562	131814876	+	0	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	-65550	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_3025	chr12	58619469	58620385	+	0	NA	Intergenic	Intergenic	-350669	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
chipseq_peak_473	chr1	68839096	68839726	+	0	NA	intron (NM_010154, intron 1 of 26)	intron (NM_010154, intron 1 of 26)	268648	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chipseq_peak_5854	chr16	64166045	64167860	+	0	NA	Intergenic	Intergenic	-302795	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_13658	chr9	66708181	66708810	+	0	NA	Intergenic	Intergenic	-5191	NM_178396	76459	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anyhydrase 12	protein-coding
chipseq_peak_7574	chr2	41184088	41185269	+	0	NA	intron (NM_053011, intron 35 of 90)	B1_Mur3|SINE|Alu	1262890	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
chipseq_peak_25	chr1	9287766	9289818	+	0	NA	intron (NM_001290390, intron 1 of 20)	intron (NM_001290390, intron 1 of 20)	11085	NM_001290393	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
chipseq_peak_10236	chr4	155295403	155296496	+	0	NA	intron (NM_008860, intron 5 of 17)	intron (NM_008860, intron 5 of 17)	45983	NR_033802	67513	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding
chipseq_peak_4269	chr14	39090733	39091206	+	0	NA	intron (NM_008734, intron 1 of 9)	intron (NM_008734, intron 1 of 9)	192667	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
chipseq_peak_11562	chr6	63179875	63181604	+	0	NA	Intergenic	Intergenic	-76118	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
chipseq_peak_2212	chr11	26072475	26074295	+	0	NA	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-128855	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
chipseq_peak_8732	chr3	54292789	54293673	+	0	NA	intron (NM_016984, intron 6 of 10)	intron (NM_016984, intron 6 of 10)	-67876	NM_001313898	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding
chipseq_peak_4367	chr14	64845710	64846286	+	0	NA	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	103849	NM_177338	219150	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding
chipseq_peak_13401	chr9	28648168	28649064	+	0	NA	intron (NM_177906, intron 2 of 7)	intron (NM_177906, intron 2 of 7)	857347	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_8420	chr2	180552068	180552740	+	0	NA	Intergenic	RLTR20C1_MM|LTR|ERVK	-28900	NM_028479	73247	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding
chipseq_peak_5682	chr16	43298032	43298600	+	0	NA	intron (NM_019778, intron 1 of 8)	intron (NM_019778, intron 1 of 8)	51032	NM_181058	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding
chipseq_peak_3926	chr13	97468703	97469530	+	0	NA	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	-13585	NR_110431	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA
chipseq_peak_13834	chr9	103781388	103781862	+	0	NA	Intergenic	Intergenic	-19788	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding
chipseq_peak_10873	chr5	106597475	106598278	+	0	NA	Intergenic	Lx10|LINE|L1	98954	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding
chipseq_peak_10669	chr5	73874817	73875098	+	0	NA	Intergenic	Intergenic	193454	NM_177561	69727	Mm.48795	NM_177561		Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding
chipseq_peak_6324	chr17	56132867	56133258	+	0	NA	intron (NM_001130456, intron 1 of 16)	intron (NM_001130456, intron 1 of 16)	790	NM_013662	20359	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding
chipseq_peak_4520	chr14	89033666	89035020	+	0	NA	Intergenic	Intergenic	-562947	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_13168	chr8	106985356	106985770	+	0	NA	intron (NM_009229, intron 2 of 6)	intron (NM_009229, intron 2 of 6)	-45763	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4a (yeast)	protein-coding
chipseq_peak_5024	chr15	41864040	41864381	+	0	NA	Intergenic	Intergenic	5510	NM_175456	223513	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding
chipseq_peak_9226	chr3	128099219	128099634	+	0	NA	Intergenic	Intergenic	132179	NR_045704	402774	Mm.209170	NR_045704	ENSMUSG00000105816	D030025E07Rik	-	RIKEN cDNA D030025E07 gene	ncRNA
chipseq_peak_1296	chr10	15807205	15807938	+	0	NA	TTS (NR_131087)	TTS (NR_131087)	15794	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA
chipseq_peak_1585	chr10	54833008	54833362	+	0	NA	Intergenic	L1MB5|LINE|L1	757263	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA
chipseq_peak_9907	chr4	75589663	75590378	+	0	NA	Intergenic	Intergenic	-311734	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_6005	chr16	75483046	75484996	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	102040	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_4819	chr15	13764521	13765914	+	0	NA	Intergenic	Intergenic	-591542	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_11522	chr6	55577315	55581381	+	0	NA	Intergenic	Intergenic	101915	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding
chipseq_peak_13407	chr9	28899564	28899957	+	0	NA	intron (NM_177906, intron 4 of 7)	intron (NM_177906, intron 4 of 7)	1063369	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_7724	chr2	55208404	55209027	+	0	NA	Intergenic	Intergenic	-227255	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
chipseq_peak_5268	chr15	67839565	67841290	+	0	NA	Intergenic	Intergenic	418429	NM_198644	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
chipseq_peak_6314	chr17	54664655	54665061	+	0	NA	Intergenic	Intergenic	-294784	NR_045825	69418	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA
chipseq_peak_810	chr1	132659638	132660016	+	0	NA	intron (NM_182716, intron 2 of 29)	intron (NM_182716, intron 2 of 29)	-16969	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding
chipseq_peak_2421	chr11	76290281	76290771	+	0	NA	intron (NM_008750, intron 1 of 7)	intron (NM_008750, intron 1 of 7)	46790	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90	RNA methyltransferase like 1	protein-coding
chipseq_peak_1581	chr10	54360691	54361134	+	0	NA	Intergenic	Intergenic	284990	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA
chipseq_peak_1132	chr1	179432897	179433819	+	0	NA	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	84645	NM_027188	69726	Mm.222338	NM_027188		Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding
chipseq_peak_10322	chr5	16506647	16507327	+	0	NA	Intergenic	Intergenic	-46508	NM_010427	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
chipseq_peak_2474	chr11	86381720	86382171	+	0	NA	Intergenic	Intergenic	-24420	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding
chipseq_peak_5027	chr15	42376272	42376555	+	0	NA	Intergenic	Intergenic	300564	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
chipseq_peak_1496	chr10	41594802	41595129	+	0	NA	intron (NM_001303469, intron 3 of 20)	intron (NM_001303469, intron 3 of 20)	11630	NM_001303469	75973	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm61	coiled-coil domain containing 162	protein-coding
chipseq_peak_580	chr1	83635953	83636588	+	0	NA	Intergenic	Intergenic	-228070	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding
chipseq_peak_7063	chr18	90121570	90122632	+	0	NA	Intergenic	Intergenic	-352965	NM_001039173	623279	Mm.447164	NM_001039173		Dok6	Dok-6	docking protein 6	protein-coding
chipseq_peak_4732	chr14	119630710	119631485	+	0	NA	intron (NM_015820, intron 1 of 1)	MER53|DNA|hAT	-118130	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA
chipseq_peak_559	chr1	80390170	80391081	+	0	NA	Intergenic	Intergenic	-49935	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding
chipseq_peak_12930	chr8	60617072	60617393	+	0	NA	Intergenic	Intergenic	-15593	NM_027756	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding
chipseq_peak_4861	chr15	19276240	19276713	+	0	NA	Intergenic	Intergenic	456147	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_6254	chr17	44617980	44619259	+	0	NA	intron (NR_073392, intron 6 of 7)	intron (NR_073392, intron 6 of 7)	117557	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding
chipseq_peak_649	chr1	98173816	98174379	+	0	NA	Intergenic	Intergenic	42630	NR_040439	69030	Mm.402692	NR_040439	ENSMUSG00000100182	1810006J02Rik	-	RIKEN cDNA 1810006J02 gene	ncRNA
chipseq_peak_13756	chr9	92141005	92142141	+	0	NA	Intergenic	Intergenic	-51363	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding
chipseq_peak_9815	chr4	54469903	54470424	+	0	NA	Intergenic	Intergenic	-477782	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding
chipseq_peak_13052	chr8	86338208	86339014	+	0	NA	Intergenic	Intergenic	227979	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
chipseq_peak_9458	chr4	6331107	6331549	+	0	NA	Intergenic	Intergenic	-34352	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding
chipseq_peak_5031	chr15	42810910	42811437	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-134196	NM_009640	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
chipseq_peak_4606	chr14	104537674	104538445	+	0	NA	Intergenic	Intergenic	-15393	NM_026047	72486	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding
chipseq_peak_6679	chr18	26439069	26439598	+	0	NA	Intergenic	Intergenic	-685350	NM_001146294	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
chipseq_peak_977	chr1	160284682	160285155	+	0	NA	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	11054	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA
chipseq_peak_3297	chr12	97155820	97157544	+	0	NA	Intergenic	Intergenic	1102777	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding
chipseq_peak_3954	chr13	100743802	100744668	+	0	NA	intron (NM_001190264, intron 1 of 3)	CpG	424	NM_025369	66128	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding
chipseq_peak_8854	chr3	69907743	69908252	+	0	NA	Intergenic	Intergenic	-48103	NM_001286959	66183	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding
chipseq_peak_12584	chr8	6456508	6457300	+	0	NA	Intergenic	Intergenic	-1351672	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_7828	chr2	65052463	65052821	+	0	NA	Intergenic	Intergenic	-29876	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding
chipseq_peak_7038	chr18	83932760	83933347	+	0	NA	Intergenic	Intergenic	153509	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding
chipseq_peak_10538	chr5	57847465	57847821	+	0	NA	intron (NM_001310608, intron 1 of 3)	intron (NM_001310608, intron 1 of 3)	129562	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding
chipseq_peak_5168	chr15	58078046	58079211	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-2120	NM_009572	22770	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding
chipseq_peak_3703	chr13	74134269	74134611	+	0	NA	intron (NM_001081060, intron 1 of 15)	L1P5|LINE|L1	12925	NM_001081060	105243	Mm.261564	NM_001081060	ENSMUSG00000036123	Slc9a3	9030624O13Rik|AI930210|NHE-3|NHE3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	protein-coding
chipseq_peak_8028	chr2	101525750	101526215	+	0	NA	Intergenic	Intergenic	-98766	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
chipseq_peak_3601	chr13	46334721	46336215	+	0	NA	Intergenic	Intergenic	61747	NM_001005422	380842	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding
chipseq_peak_14015	chrX	63658731	63659279	+	0	NA	Intergenic	Intergenic	493193	NM_001177377	627470	Mm.233605	NM_001177377	ENSMUSG00000079579	Gm6760	EG627470	predicted gene 6760	protein-coding
chipseq_peak_1152	chr1	183194095	183194373	+	0	NA	intron (NM_001278218, intron 1 of 8)	intron (NM_001278218, intron 1 of 8)	27295	NM_001278219	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched homolog 1 (Drosophila)	protein-coding
chipseq_peak_3306	chr12	98544909	98545479	+	0	NA	intron (NM_029911, intron 1 of 6)	MIR|SINE|MIR	29518	NM_001316666	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding
chipseq_peak_380	chr1	56241977	56244878	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	224449	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_11531	chr6	55879191	55880017	+	0	NA	intron (NM_001081665, intron 4 of 13)	intron (NM_001081665, intron 4 of 13)	42586	NM_001081665	232016	Mm.333084	NM_001081665	ENSMUSG00000037973	Ccdc129	D530004J12Rik|Gm458	coiled-coil domain containing 129	protein-coding
chipseq_peak_7506	chr2	23616389	23617172	+	0	NA	Intergenic	Intergenic	-44676	NM_001165998	76857	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding
chipseq_peak_5184	chr15	60262330	60262628	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	-245861	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding
chipseq_peak_6487	chr17	85758605	85758878	+	0	NA	Intergenic	Intergenic	-70487	NM_011380	20472	Mm.5039	NM_011380	ENSMUSG00000024134	Six2	-	sine oculis-related homeobox 2	protein-coding
chipseq_peak_9950	chr4	79463148	79463885	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	869469	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_4385	chr14	68381659	68383000	+	0	NA	Intergenic	Intergenic	151360	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding
chipseq_peak_8593	chr3	34967745	34968383	+	0	NA	Intergenic	Intergenic	-45413	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA
chipseq_peak_13507	chr9	45610653	45611762	+	0	NA	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-179975	NR_040732	74602	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA
chipseq_peak_9745	chr4	39199245	39199626	+	0	NA	Intergenic	Intergenic	-250858	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
chipseq_peak_9965	chr4	80787776	80789148	+	0	NA	Intergenic	Intergenic	-45751	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_13971	chrX	19556061	19556828	+	0	NA	Intergenic	Intergenic	-409473	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA
chipseq_peak_1167	chr1	187785174	187786025	+	0	NA	intron (NM_001243792, intron 1 of 7)	intron (NM_001243792, intron 1 of 7)	176593	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding
chipseq_peak_3505	chr13	29186956	29187465	+	0	NA	Intergenic	Intergenic	170955	NR_045073	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
chipseq_peak_8796	chr3	62457446	62458549	+	0	NA	intron (NM_001081295, intron 11 of 13)	intron (NM_001081295, intron 11 of 13)	48991	NM_028136	72162	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding
chipseq_peak_9621	chr4	24598639	24598982	+	0	NA	exon (NM_199467, exon 22 of 24)	exon (NM_199467, exon 22 of 24)	102348	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_689	chr1	106154924	106155361	+	0	NA	intron (NR_040630, intron 2 of 2)	intron (NR_040630, intron 2 of 2)	16382	NR_040630	626049	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA
chipseq_peak_6069	chr16	82475274	82476579	+	0	NA	Intergenic	Intergenic	1275229	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
chipseq_peak_8809	chr3	65460260	65461182	+	0	NA	Intergenic	Intergenic	-67726	NM_178892	99929	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding
chipseq_peak_1961	chr10	109431115	109431430	+	0	NA	Intergenic	L2|LINE|L2	-420297	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding
chipseq_peak_7272	chr19	47507139	47507587	+	0	NA	intron (NM_175360, intron 9 of 9)	intron (NM_175360, intron 9 of 9)	-5619	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA
chipseq_peak_14068	chrX	120609994	120610321	+	0	NA	intron (NR_073452, intron 4 of 6)	intron (NR_073452, intron 4 of 6)	-296931	NM_001281531	624957		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding
chipseq_peak_4888	chr15	21343052	21344983	+	0	NA	intron (NM_001008420, intron 2 of 11)	intron (NM_001008420, intron 2 of 11)	232565	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
chipseq_peak_14098	chrX	147527622	147528289	+	0	NA	intron (NM_001081173, intron 1 of 20)	intron (NM_001081173, intron 1 of 20)	26126	NM_001081173	210297	Mm.30506	NM_001081173	ENSMUSG00000031290	Lrch2	AI316885|mKIAA1495	leucine-rich repeats and calponin homology (CH) domain containing 2	protein-coding
chipseq_peak_7386	chr2	7045663	7046082	+	0	NA	intron (NM_001110231, intron 3 of 15)	intron (NM_001110231, intron 3 of 15)	35430	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_5314	chr15	72835403	72836039	+	0	NA	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-25397	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA
chipseq_peak_5958	chr16	73496101	73497071	+	0	NA	Intergenic	Intergenic	833437	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_4729	chr14	119464172	119465460	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	-284411	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA
chipseq_peak_4967	chr15	32257885	32258352	+	0	NA	intron (NM_009154, intron 1 of 22)	intron (NM_009154, intron 1 of 22)	13305	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding
chipseq_peak_9055	chr3	104472150	104473354	+	0	NA	intron (NM_001310698, intron 11 of 17)	intron (NM_001310698, intron 11 of 17)	39166	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding
chipseq_peak_7494	chr2	20072247	20072816	+	0	NA	Intergenic	Intergenic	-217382	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
chipseq_peak_12548	chr7	133223844	133224473	+	0	NA	Intergenic	Intergenic	95907	NR_046279	74970	Mm.491044	NR_046279		4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA
chipseq_peak_8024	chr2	101172904	101173324	+	0	NA	Intergenic	Intergenic	-451634	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
chipseq_peak_14084	chrX	137953201	137954072	+	0	NA	intron (NM_030688, intron 2 of 10)	intron (NM_030688, intron 2 of 10)	255944	NM_026469	67944	Mm.443280	NM_026469	ENSMUSG00000071686	Tex13a	1700025D03Rik	testis expressed 13A	protein-coding
chipseq_peak_1077	chr1	176916339	176917043	+	0	NA	intron (NM_029756, intron 12 of 17)	MIRc|SINE|MIR	-80558	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_7793	chr2	61557695	61558671	+	0	NA	Intergenic	Intergenic	-20403	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding
chipseq_peak_5150	chr15	55201686	55202117	+	0	NA	intron (NM_145470, intron 4 of 8)	intron (NM_145470, intron 4 of 8)	68465	NM_001037937	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding
chipseq_peak_671	chr1	103900303	103900987	+	0	NA	Intergenic	Intergenic	-868174	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_7953	chr2	82383649	82384068	+	0	NA	Intergenic	Intergenic	330200	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding
chipseq_peak_1048	chr1	171360976	171361423	+	0	NA	promoter-TSS (NM_001033039)	promoter-TSS (NM_001033039)	-401	NM_001033039	68874	Mm.10756	NM_001033039	ENSMUSG00000045259	Klhdc9	1190002J23Rik|AA087357|ESTM31	kelch domain containing 9	protein-coding
chipseq_peak_2434	chr11	78112752	78114421	+	0	NA	intron (NM_145430, intron 1 of 2)	L1M5|LINE|L1	18913	NM_145430	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding
chipseq_peak_7502	chr2	21832071	21832651	+	0	NA	Intergenic	Intergenic	-395142	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding
chipseq_peak_7556	chr2	37964101	37964825	+	0	NA	intron (NM_146122, intron 11 of 21)	intron (NM_146122, intron 11 of 21)	188214	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding
chipseq_peak_9964	chr4	80765583	80766066	+	0	NA	Intergenic	Intergenic	-68389	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_10791	chr5	89878539	89879340	+	0	NA	intron (NM_177872, intron 2 of 21)	intron (NM_177872, intron 2 of 21)	4395	NM_001081401	330119	Mm.133062	NM_177872		Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding
chipseq_peak_4535	chr14	91658745	91659872	+	0	NA	Intergenic	Intergenic	1532417	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
chipseq_peak_6602	chr18	16119721	16120169	+	0	NA	Intergenic	Intergenic	-401899	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
chipseq_peak_8643	chr3	41913166	41913621	+	0	NA	Intergenic	RMER6A|LTR|ERVK	170775	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
chipseq_peak_12481	chr7	119087736	119088737	+	0	NA	Intergenic	Intergenic	-93025	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding
chipseq_peak_4905	chr15	23164493	23165623	+	0	NA	intron (NM_001081299, intron 1 of 11)	intron (NM_001081299, intron 1 of 11)	128595	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_7583	chr2	42659473	42660168	+	0	NA	Intergenic	Intergenic	-6222	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding
chipseq_peak_9040	chr3	101622178	101622569	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-17666	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
chipseq_peak_3363	chr12	117669806	117670262	+	0	NA	intron (NM_175930, intron 11 of 27)	intron (NM_175930, intron 11 of 27)	153555	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chipseq_peak_8497	chr3	18830949	18831537	+	0	NA	Intergenic	Intergenic	331822	NM_028840	74252	Mm.200383	NM_028840		Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding
chipseq_peak_8994	chr3	85490113	85491014	+	0	NA	Intergenic	Intergenic	23186	NR_130326	100316670		NR_130326	ENSMUSG00000080424	Mir466k	Mirn466k|mmu-mir-466k	microRNA 466k	ncRNA
chipseq_peak_13655	chr9	65201483	65202381	+	0	NA	Intergenic	Intergenic	-12758	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding
chipseq_peak_11836	chr6	109729778	109730630	+	0	NA	Intergenic	Intergenic	901563	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
chipseq_peak_1343	chr10	23292630	23293643	+	0	NA	intron (NM_010167, intron 2 of 18)	intron (NM_010167, intron 2 of 18)	56767	NM_010167	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	eyes absent 4 homolog (Drosophila)	protein-coding
chipseq_peak_13621	chr9	60884959	60887739	+	0	NA	Intergenic	Intergenic	91801	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
chipseq_peak_5548	chr16	25198409	25199152	+	0	NA	Intergenic	Intergenic	-88037	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding
chipseq_peak_400	chr1	56900086	56901242	+	0	NA	intron (NM_139146, intron 3 of 10)	intron (NM_139146, intron 3 of 10)	70670	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding
chipseq_peak_12137	chr7	55400787	55402057	+	0	NA	Intergenic	Intergenic	-366762	NM_001310740	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding
chipseq_peak_10687	chr5	76714679	76715075	+	0	NA	Intergenic	Intergenic	123163	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding
chipseq_peak_4110	chr13	117658940	117661017	+	0	NA	intron (NM_010408, intron 2 of 7)	intron (NM_010408, intron 2 of 7)	57658	NM_010408	15165	Mm.343429	NM_010408		Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding
chipseq_peak_3833	chr13	84772309	84772754	+	0	NA	Intergenic	Intergenic	-416946	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
chipseq_peak_12819	chr8	48063483	48064036	+	0	NA	Intergenic	Intergenic	-35333	NM_001161516	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding
chipseq_peak_8816	chr3	66101718	66102358	+	0	NA	intron (NM_145820, intron 11 of 13)	intron (NM_145820, intron 11 of 13)	-117849	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding
chipseq_peak_928	chr1	151301604	151302522	+	0	NA	Intergenic	Intergenic	-42435	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding
chipseq_peak_9428	chr3	157203306	157203919	+	0	NA	intron (NM_001039094, intron 6 of 6)	intron (NM_001039094, intron 6 of 6)	-330785	NM_017381	53861	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding
chipseq_peak_1448	chr10	34757788	34758136	+	0	NA	Intergenic	Intergenic	274562	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding
chipseq_peak_9813	chr4	54328264	54329086	+	0	NA	Intergenic	Intergenic	502630	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding
chipseq_peak_5288	chr15	69713914	69715348	+	0	NA	Intergenic	Intergenic	-209602	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_7071	chr19	7315017	7315454	+	0	NA	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-19788	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding
chipseq_peak_1373	chr10	27068401	27069775	+	0	NA	intron (NM_008481, intron 41 of 63)	intron (NM_008481, intron 41 of 63)	296576	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
chipseq_peak_14013	chrX	61304847	61305926	+	0	NA	Intergenic	Intergenic	114093	NR_033502	320247	Mm.447372	NR_033502		C030023E24Rik	-	RIKEN cDNA C030023E24 gene	ncRNA
chipseq_peak_1020	chr1	167885754	167886118	+	0	NA	Intergenic	Intergenic	196378	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding
chipseq_peak_6626	chr18	19937796	19938401	+	0	NA	Intergenic	Intergenic	63999	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_12705	chr8	29213579	29213887	+	0	NA	intron (NM_153135, intron 1 of 17)	intron (NM_153135, intron 1 of 17)	5903	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_4655	chr14	111149025	111150114	+	0	NA	Intergenic	Intergenic	-394420	NM_175499	239250	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding
chipseq_peak_9199	chr3	123806488	123806901	+	0	NA	Intergenic	Intergenic	-115842	NR_121616	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding
chipseq_peak_1402	chr10	28718263	28719552	+	0	NA	intron (NM_178666, intron 1 of 5)	ID_B1|SINE|B4	50547	NR_131208	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding
chipseq_peak_8	chr1	6547138	6547512	+	0	NA	intron (NM_001244693, intron 2 of 22)	MER121|DNA|TcMar?	60094	NM_001244693	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
chipseq_peak_1409	chr10	29433025	29433495	+	0	NA	Intergenic	Intergenic	-70818	NM_001110198	68031	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding
chipseq_peak_10628	chr5	69596532	69596953	+	0	NA	Intergenic	L1M4|LINE|L1	-4457	NM_001038015	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding
chipseq_peak_8120	chr2	115247991	115248704	+	0	NA	Intergenic	Intergenic	95933	NR_040516	78193	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA
chipseq_peak_3688	chr13	69951784	69952559	+	0	NA	Intergenic	Intergenic	-69788	NR_131156	100042291	Mm.412604	NR_131156		Gm3772	-	predicted gene 3772	ncRNA
chipseq_peak_5391	chr15	92571014	92571573	+	0	NA	intron (NM_001164593, intron 3 of 9)	intron (NM_001164593, intron 3 of 9)	-25816	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
chipseq_peak_805	chr1	131886164	131887134	+	0	NA	Intergenic	Intergenic	19372	NM_144875	226422	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding
chipseq_peak_12185	chr7	67685849	67686712	+	0	NA	intron (NM_001168475, intron 6 of 10)	intron (NM_001168475, intron 6 of 10)	38870	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding
chipseq_peak_10112	chr4	104835072	104835375	+	0	NA	intron (NM_001316667, intron 7 of 11)	intron (NM_001316667, intron 7 of 11)	41175	NM_001316667	230558	Mm.197638	NM_146148	ENSMUSG00000035031	C8a	-	complement component 8, alpha polypeptide	protein-coding
chipseq_peak_3788	chr13	83120140	83120729	+	0	NA	Intergenic	Intergenic	-383600	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_13092	chr8	96255712	96256646	+	0	NA	Intergenic	Intergenic	289794	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_353	chr1	54898595	54899442	+	0	NA	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	27369	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chipseq_peak_8535	chr3	25773084	25775488	+	0	NA	intron (NM_138666, intron 5 of 7)	intron (NM_138666, intron 5 of 7)	379021	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_5509	chr16	12305066	12305430	+	0	NA	Intergenic	Intergenic	321135	NM_001174086	72555	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding
chipseq_peak_1346	chr10	23898519	23898898	+	0	NA	intron (NM_011704, intron 3 of 6)	intron (NM_011704, intron 3 of 6)	4020	NM_011704	22361	Mm.27154	NM_011704	ENSMUSG00000037440	Vnn1	V-1	vanin 1	protein-coding
chipseq_peak_6292	chr17	51570710	51571001	+	0	NA	intron (NR_037250, intron 3 of 4)	MamRep1879|DNA|hAT-Tip100?	-122586	NR_046166	328837	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA
chipseq_peak_10323	chr5	16817165	16817672	+	0	NA	Intergenic	Intergenic	263517	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
chipseq_peak_74	chr1	19266850	19268036	+	0	NA	Intergenic	Intergenic	55389	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding
chipseq_peak_8470	chr3	14107673	14108181	+	0	NA	intron (NM_178631, intron 6 of 9)	intron (NM_178631, intron 6 of 9)	161555	NM_001163329	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding
chipseq_peak_6422	chr17	74228875	74229212	+	0	NA	intron (NM_133771, intron 5 of 8)	intron (NM_133771, intron 5 of 8)	65820	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding
chipseq_peak_5423	chr15	95111415	95112089	+	0	NA	intron (NR_015482, intron 2 of 2)	intron (NR_015482, intron 2 of 2)	37566	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_3100	chr12	68207428	68208797	+	0	NA	Intergenic	Intergenic	-538841	NR_033146	100316870	Mm.379794	NR_033146		Gm17821	-	DDB1 and CUL4 associated factor 5 pseudogene	pseudo
chipseq_peak_6086	chr16	86644799	86645787	+	0	NA	Intergenic	Intergenic	-708892	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
chipseq_peak_734	chr1	119189517	119189856	+	0	NA	Intergenic	CpG	-136067	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding
chipseq_peak_13356	chr9	24284696	24285130	+	0	NA	intron (NM_175678, intron 4 of 9)	L1M6|LINE|L1	186895	NM_175678	319239	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
chipseq_peak_9265	chr3	137401489	137401789	+	0	NA	intron (NM_016885, intron 4 of 10)	intron (NM_016885, intron 4 of 10)	60561	NM_016885	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding
chipseq_peak_10003	chr4	86234839	86235361	+	0	NA	intron (NM_029967, intron 9 of 27)	intron (NM_029967, intron 9 of 27)	181185	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding
chipseq_peak_8666	chr3	47168596	47169630	+	0	NA	Intergenic	Intergenic	-268331	NR_105800	102465199		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA
chipseq_peak_13394	chr9	28336351	28338294	+	0	NA	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	546053	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_9526	chr4	13741695	13743406	+	0	NA	promoter-TSS (NM_001111026)	promoter-TSS (NM_001111026)	-752	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_5972	chr16	74234407	74235800	+	0	NA	intron (NM_175549, intron 2 of 27)	intron (NM_175549, intron 2 of 27)	106964	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_8200	chr2	135010338	135010748	+	0	NA	intron (NM_019677, intron 3 of 32)	intron (NM_019677, intron 3 of 32)	205073	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA
chipseq_peak_1193	chr1	192421260	192422439	+	0	NA	intron (NM_010600, intron 9 of 10)	intron (NM_010600, intron 9 of 10)	231072	NM_001038607	16510	Mm.4489	NM_010600	ENSMUSG00000058248	Kcnh1	EAG1|Kv10.1|M-eag	potassium voltage-gated channel, subfamily H (eag-related), member 1	protein-coding
chipseq_peak_9885	chr4	72221604	72222095	+	0	NA	Intergenic	Lx8|LINE|L1	20605	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA
chipseq_peak_5700	chr16	45659436	45659872	+	0	NA	intron (NM_172455, intron 16 of 17)	intron (NM_172455, intron 16 of 17)	-5536	NM_145389	212998	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding
chipseq_peak_7089	chr19	14597565	14598679	+	0	NA	promoter-TSS (NM_011600)	promoter-TSS (NM_011600)	61	NM_001302950	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_2155	chr11	16261278	16261721	+	0	NA	intron (NM_001290539, intron 3 of 4)	intron (NM_001290539, intron 3 of 4)	3775	NM_001290539	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding
chipseq_peak_996	chr1	163337619	163338611	+	0	NA	Intergenic	Intergenic	-24465	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding
chipseq_peak_5665	chr16	42003944	42004627	+	0	NA	intron (NM_175548, intron 3 of 5)	L2|LINE|L2	299184	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
chipseq_peak_7021	chr18	78624500	78624962	+	0	NA	Intergenic	Intergenic	-27781	NM_207651	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
chipseq_peak_4	chr1	4923105	4923698	+	0	NA	intron (NM_001177795, intron 3 of 5)	intron (NM_001177795, intron 3 of 5)	65073	NM_001159751	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding
chipseq_peak_7402	chr2	7426109	7426949	+	0	NA	Intergenic	Intergenic	-30331	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_2071	chr10	124208304	124209162	+	0	NA	Intergenic	Intergenic	-260341	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo
chipseq_peak_199	chr1	33641029	33641956	+	0	NA	intron (NM_008922, intron 5 of 13)	intron (NM_008922, intron 5 of 13)	28302	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding
chipseq_peak_3454	chr13	17214693	17215596	+	0	NA	intron (NM_138654, intron 12 of 13)	intron (NM_138654, intron 12 of 13)	479621	NM_138654	192136	Mm.364180	NM_138654		Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding
chipseq_peak_12915	chr8	58575428	58575773	+	0	NA	intron (NM_175032, intron 1 of 11)	intron (NM_175032, intron 1 of 11)	125196	NM_001177534	100271928	Mm.484123	NM_001177534		Gm15881	OTTMUSG00000027193	predicted gene 15881	protein-coding
chipseq_peak_4694	chr14	115294470	115294873	+	0	NA	intron (NM_175500, intron 2 of 7)	intron (NM_175500, intron 2 of 7)	114881	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA
chipseq_peak_4942	chr15	28740382	28740990	+	0	NA	Intergenic	Intergenic	536920	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
chipseq_peak_5765	chr16	52474474	52475659	+	0	NA	Intergenic	Intergenic	-22069	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
chipseq_peak_11936	chr6	137364728	137365286	+	0	NA	intron (NM_001164401, intron 1 of 25)	intron (NM_001164401, intron 1 of 25)	-45714	NM_001164402	19277	Mm.186361	NM_011216		Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
chipseq_peak_6184	chr17	10506232	10507706	+	0	NA	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	50753	NR_077238	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA
chipseq_peak_11825	chr6	108274052	108274765	+	0	NA	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	61312	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding
chipseq_peak_3356	chr12	117468562	117469058	+	0	NA	Intergenic	Intergenic	-47669	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chipseq_peak_2440	chr11	80428048	80428564	+	0	NA	promoter-TSS (NM_178616)	promoter-TSS (NM_178616)	-309	NM_178616	69077	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding
chipseq_peak_4201	chr14	24512617	24513062	+	0	NA	Intergenic	Intergenic	22158	NM_207634	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding
chipseq_peak_3354	chr12	116919583	116920250	+	0	NA	intron (NM_011215, intron 11 of 22)	intron (NM_011215, intron 11 of 22)	231353	NR_033538	100038689	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	ENSMUSG00000072792	predicted gene 10421	ncRNA
chipseq_peak_4331	chr14	60698770	60699234	+	0	NA	intron (NM_001033272, intron 2 of 12)	intron (NM_001033272, intron 2 of 12)	-33902	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding
chipseq_peak_11678	chr6	96090063	96091539	+	0	NA	Intergenic	Intergenic	-22353	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding
chipseq_peak_10063	chr4	97647465	97647804	+	0	NA	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-63043	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA
chipseq_peak_12801	chr8	44827060	44827453	+	0	NA	Intergenic	Intergenic	-122952	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chipseq_peak_8551	chr3	28332352	28332989	+	0	NA	intron (NM_001163007, intron 1 of 31)	intron (NM_001163007, intron 1 of 31)	69456	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding
chipseq_peak_12725	chr8	33746878	33748100	+	0	NA	intron (NM_001206849, intron 1 of 1)	intron (NM_001206849, intron 1 of 1)	281	NM_001206849	72632	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding
chipseq_peak_4304	chr14	54253848	54254299	+	0	NA	promoter-TSS (NM_001113358)	promoter-TSS (NM_001113358)	-56	NM_001205181	105501	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding
chipseq_peak_5666	chr16	42017244	42017544	+	0	NA	intron (NM_175548, intron 3 of 5)	intron (NM_175548, intron 3 of 5)	286075	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
chipseq_peak_6200	chr17	14825646	14825948	+	0	NA	intron (NM_175173, intron 24 of 24)	intron (NM_175173, intron 24 of 24)	117327	NM_175173	71682	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding
chipseq_peak_9460	chr4	6376402	6377074	+	0	NA	intron (NM_016807, intron 1 of 8)	intron (NM_016807, intron 1 of 8)	11058	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding
chipseq_peak_2871	chr12	38600428	38600803	+	0	NA	intron (NR_045943, intron 1 of 8)	intron (NR_045943, intron 1 of 8)	13906	NR_045943	73867	Mm.78933	NR_045943		4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA
chipseq_peak_4103	chr13	116535167	116535782	+	0	NA	Intergenic	Intergenic	-225786	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding
chipseq_peak_1643	chr10	66912258	66912623	+	0	NA	Intergenic	Intergenic	-92635	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA
chipseq_peak_9988	chr4	83580118	83580485	+	0	NA	intron (NM_001081012, intron 6 of 25)	intron (NM_001081012, intron 6 of 25)	54756	NM_001081012	320226	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding
chipseq_peak_12888	chr8	55033672	55036232	+	0	NA	intron (NM_001253756, intron 1 of 5)	intron (NM_001253756, intron 1 of 5)	80224	NM_153581	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_3047	chr12	61321884	61322860	+	0	NA	Intergenic	Intergenic	199448	NR_045049	100504101	Mm.235026	NR_045049		Gm20063	-	predicted gene, 20063	ncRNA
chipseq_peak_7266	chr19	45956835	45957146	+	0	NA	intron (NM_198296, intron 10 of 25)	intron (NM_198296, intron 10 of 25)	41498	NM_198296	71617	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding
chipseq_peak_10626	chr5	69233510	69234540	+	0	NA	intron (NM_175519, intron 1 of 1)	intron (NM_175519, intron 1 of 1)	107684	NM_175519	243043	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding
chipseq_peak_3403	chr13	6469399	6472000	+	0	NA	Intergenic	Intergenic	-77458	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding
chipseq_peak_9554	chr4	16415215	16416285	+	0	NA	Intergenic	Intergenic	251640	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA
chipseq_peak_10109	chr4	104670880	104671598	+	0	NA	intron (NR_104385, intron 4 of 15)	intron (NR_104385, intron 4 of 15)	-95078	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding
chipseq_peak_11885	chr6	117775267	117776097	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-23913	NR_045731	72263	Mm.443289	NR_045731	ENSMUSG00000099869	1700030F04Rik	-	RIKEN cDNA 1700030F04 gene	ncRNA
chipseq_peak_9283	chr3	139885584	139887004	+	0	NA	Intergenic	Intergenic	-141955	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA
chipseq_peak_3886	chr13	92220126	92220503	+	0	NA	intron (NM_001311120, intron 22 of 23)	intron (NM_001311120, intron 22 of 23)	-134469	NM_010049	13361	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding
chipseq_peak_3316	chr12	99860993	99861335	+	0	NA	intron (NM_030172, intron 3 of 5)	intron (NM_030172, intron 3 of 5)	22278	NM_030172	78767	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding
chipseq_peak_11426	chr6	42231142	42231726	+	0	NA	Intergenic	Intergenic	-14501	NM_029555	76263	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding
chipseq_peak_1776	chr10	90679607	90681439	+	0	NA	intron (NM_181398, intron 2 of 9)	intron (NM_181398, intron 2 of 9)	103832	NM_001177398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_12858	chr8	54222265	54222702	+	0	NA	Intergenic	Intergenic	144951	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
chipseq_peak_13060	chr8	87513298	87513635	+	0	NA	intron (NR_125722, intron 1 of 3)	intron (NR_125722, intron 1 of 3)	40350	NR_125722	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA
chipseq_peak_9991	chr4	84766973	84768702	+	0	NA	Intergenic	Intergenic	-92751	NM_172870	242509	Mm.190774	NM_172870		Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding
chipseq_peak_904	chr1	146552957	146553322	+	0	NA	intron (NM_001145807, intron 2 of 7)	intron (NM_001145807, intron 2 of 7)	55452	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_13273	chr9	4573615	4574032	+	0	NA	intron (NM_001113180, intron 4 of 16)	intron (NM_001113180, intron 4 of 16)	190286	NM_145609	78100	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding
chipseq_peak_6884	chr18	56287453	56288400	+	0	NA	Intergenic	Intergenic	-144206	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
chipseq_peak_3556	chr13	42733850	42734772	+	0	NA	intron (NM_001302635, intron 3 of 13)	intron (NM_001302635, intron 3 of 13)	24730	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_1610	chr10	59104730	59105719	+	0	NA	intron (NM_172788, intron 8 of 9)	intron (NM_172788, intron 8 of 9)	116623	NM_001024910	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding
chipseq_peak_443	chr1	63742910	63743334	+	0	NA	intron (NM_172422, intron 7 of 11)	B3|SINE|B2	12497	NM_172422	75619	Mm.30965	NM_172422		Fastkd2	2810421I24Rik	FAST kinase domains 2	protein-coding
chipseq_peak_12951	chr8	64941325	64941745	+	0	NA	Intergenic	Intergenic	-5650	NM_001163747	73067	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding
chipseq_peak_6350	chr17	63075943	63076636	+	0	NA	intron (NM_015794, intron 8 of 8)	intron (NM_015794, intron 8 of 8)	-194972	NM_207654	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_5189	chr15	60705717	60706518	+	0	NA	Intergenic	Charlie15b|DNA|hAT-Charlie	-116848	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA
chipseq_peak_12696	chr8	28682585	28683120	+	0	NA	intron (NM_153135, intron 15 of 17)	intron (NM_153135, intron 15 of 17)	536784	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_12204	chr7	72400073	72400484	+	0	NA	Intergenic	Intergenic	-93683	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding
chipseq_peak_3144	chr12	71980056	71982183	+	0	NA	intron (NM_001286452, intron 21 of 24)	B1F|SINE|Alu	89872	NM_181752	238252	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding
chipseq_peak_4233	chr14	31831318	31832607	+	0	NA	Intergenic	Intergenic	-1547	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding
chipseq_peak_8106	chr2	114260417	114260673	+	0	NA	Intergenic	Intergenic	-59113	NM_175466	228491	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding
chipseq_peak_12217	chr7	73870158	73870764	+	0	NA	Intergenic	L1M2c|LINE|L1	44537	NR_102375	100861851		NR_102375		Gm21269	-	predicted gene, 21269	ncRNA
chipseq_peak_4790	chr15	10680618	10681127	+	0	NA	intron (NM_001166408, intron 2 of 17)	intron (NM_001166408, intron 2 of 17)	32668	NM_030690	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding
chipseq_peak_900	chr1	145845768	145847331	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-649117	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_12881	chr8	54886670	54887836	+	0	NA	intron (NM_001253754, intron 1 of 6)	intron (NM_001253754, intron 1 of 6)	-67475	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_6827	chr18	52403073	52404049	+	0	NA	Intergenic	Charlie29a|DNA|hAT-Charlie	-62132	NM_026040	67222	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding
chipseq_peak_13647	chr9	63534811	63535682	+	0	NA	intron (NM_001311098, intron 8 of 21)	intron (NM_001311098, intron 8 of 21)	67247	NM_001311098	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding
chipseq_peak_8148	chr2	123920436	123921269	+	0	NA	Intergenic	Intergenic	-169117	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
chipseq_peak_7095	chr19	16627070	16628191	+	0	NA	intron (NM_173028, intron 68 of 71)	intron (NM_173028, intron 68 of 71)	153303	NM_173028	271564	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A (yeast)	protein-coding
chipseq_peak_11632	chr6	81441204	81441741	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	454191	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA
chipseq_peak_9768	chr4	47597346	47597923	+	0	NA	Intergenic	Intergenic	122973	NM_024171	66212	Mm.20188	NM_024171	ENSMUSG00000053317	Sec61b	1190006C12Rik|AI326121|AW122942	Sec61 beta subunit	protein-coding
chipseq_peak_5905	chr16	70154412	70155120	+	0	NA	Intergenic	Intergenic	-159183	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding
chipseq_peak_9211	chr3	124755403	124757234	+	0	NA	Intergenic	Intergenic	-175227	NR_015460	384775	Mm.489851	NR_015460	ENSMUSG00000039174	1700003H04Rik	4930538K10Rik|4933400D22Rik	RIKEN cDNA 1700003H04 gene	ncRNA
chipseq_peak_4333	chr14	60910728	60911052	+	0	NA	Intergenic	Intergenic	126324	NM_027436	70478	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding
chipseq_peak_8162	chr2	129151126	129151813	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	21769	NM_025395	66170	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding
chipseq_peak_4217	chr14	28273598	28273998	+	0	NA	intron (NM_177814, intron 14 of 15)	intron (NM_177814, intron 14 of 15)	-231675	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
chipseq_peak_12483	chr7	120156953	120158066	+	0	NA	intron (NR_130979, intron 2 of 2)	intron (NR_130979, intron 2 of 2)	1394	NR_130979	75073	Mm.399233	NR_130979		4930505K13Rik	-	RIKEN cDNA 4930505K13 gene	ncRNA
chipseq_peak_4479	chr14	83021758	83022246	+	0	NA	Intergenic	Intergenic	-1421561	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
chipseq_peak_5412	chr15	94868050	94869246	+	0	NA	intron (NM_178789, intron 3 of 7)	intron (NM_178789, intron 3 of 7)	239463	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding
chipseq_peak_3962	chr13	101238732	101239390	+	0	NA	intron (NR_046158, intron 1 of 3)	intron (NR_046158, intron 1 of 3)	6934	NR_046158	328324	Mm.402274	NR_046158		5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA
chipseq_peak_8516	chr3	21553312	21553741	+	0	NA	Intergenic	Intergenic	-523126	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
chipseq_peak_13820	chr9	102818771	102819593	+	0	NA	Intergenic	Intergenic	-15738	NM_013649	20187	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding
chipseq_peak_3461	chr13	18651313	18651995	+	0	NA	Intergenic	Intergenic	-65638	NM_172120	218035	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	vacuolar protein sorting 41 (yeast)	protein-coding
chipseq_peak_9119	chr3	117570748	117571133	+	0	NA	Intergenic	Intergenic	-4287	NM_001305451	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding
chipseq_peak_10517	chr5	55612806	55613652	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	1263237	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
chipseq_peak_7515	chr2	28387276	28387727	+	0	NA	Intergenic	Intergenic	-60440	NM_001005420	241289	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding
chipseq_peak_250	chr1	40913576	40914009	+	0	NA	Intergenic	Intergenic	108191	NM_001081198	381339	Mm.334678	NM_001081198		Tmem182	2310079P10Rik|AI414494	transmembrane protein 182	protein-coding
chipseq_peak_13163	chr8	106697669	106698353	+	0	NA	intron (NM_173037, intron 5 of 17)	B1F2|SINE|Alu	14943	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding
chipseq_peak_6282	chr17	49951520	49951896	+	0	NA	Intergenic	Intergenic	238789	NM_181397	76438	Mm.41854	NM_181397		Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding
chipseq_peak_12269	chr7	82490986	82491877	+	0	NA	intron (NM_001190374, intron 7 of 29)	intron (NM_001190374, intron 7 of 29)	155737	NM_001190374	269959	Mm.65306	NM_001190374	ENSMUSG00000070469	Adamtsl3	9230119C12Rik|C130057K09|mKIAA1233	ADAMTS-like 3	protein-coding
chipseq_peak_4390	chr14	68973674	68974371	+	0	NA	Intergenic	Intergenic	-55267	NM_009285	20855	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding
chipseq_peak_5922	chr16	71997705	71998728	+	0	NA	Intergenic	LTR33A|LTR|ERVL	236111	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA
chipseq_peak_9384	chr3	151553638	151553909	+	0	NA	Intergenic	L1MC3|LINE|L1	115891	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_8708	chr3	53292399	53292845	+	0	NA	Intergenic	B3|SINE|B2	170636	NM_172501	212114	Mm.85744	NM_172501		Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding
chipseq_peak_7105	chr19	19100555	19101431	+	0	NA	intron (NM_001043354, intron 1 of 9)	intron (NM_001043354, intron 1 of 9)	10203	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
chipseq_peak_12163	chr7	61837270	61838699	+	0	NA	promoter-TSS (NR_037286)	promoter-TSS (NR_037286)	-582	NR_037286	100526506		NR_037286	ENSMUSG00000077107	Mir344c	mir-344c|mmu-mir-344c	microRNA 344c	ncRNA
chipseq_peak_9651	chr4	27845547	27846874	+	0	NA	Intergenic	Intergenic	-966921	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_11916	chr6	135444311	135444990	+	0	NA	Intergenic	PB1D11|SINE|Alu	77157	NM_001288627	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding
chipseq_peak_6338	chr17	61936821	61937932	+	0	NA	Intergenic	Intergenic	943941	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_10877	chr5	107496190	107499484	+	0	NA	promoter-TSS (NM_001168557)	promoter-TSS (NM_001168557)	58	NM_001168557	231570	Mm.261891	NM_001007574	ENSMUSG00000044060	A830010M20Rik	AI849226|Kiaa1107|mKIAA1107	RIKEN cDNA A830010M20 gene	protein-coding
chipseq_peak_1922	chr10	106047581	106048041	+	0	NA	Intergenic	MER63B|DNA|hAT-Blackjack	206332	NM_025602	52713	Mm.339224	NM_025602		Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding
chipseq_peak_3840	chr13	85430756	85431100	+	0	NA	Intergenic	Intergenic	-141442	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding
chipseq_peak_11449	chr6	46032911	46033460	+	0	NA	intron (NM_001004357, intron 8 of 23)	intron (NM_001004357, intron 8 of 23)	973124	NM_001004357	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_12019	chr6	148413012	148413493	+	0	NA	intron (NM_198967, intron 3 of 19)	intron (NM_198967, intron 3 of 19)	31100	NM_198967	387314	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding
chipseq_peak_2836	chr12	35015968	35016357	+	0	NA	Intergenic	Intergenic	-31027	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding
chipseq_peak_2643	chr12	6114780	6115808	+	0	NA	Intergenic	Intergenic	738792	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA
chipseq_peak_5727	chr16	48562599	48562974	+	0	NA	intron (NM_010816, intron 16 of 26)	intron (NM_010816, intron 16 of 26)	131549	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding
chipseq_peak_2496	chr11	89839624	89839970	+	0	NA	Intergenic	Intergenic	163097	NM_008796	18559	Mm.5062	NM_008796		Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding
chipseq_peak_6674	chr18	24959273	24959671	+	0	NA	intron (NM_175276, intron 5 of 26)	intron (NM_175276, intron 5 of 26)	206493	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding
chipseq_peak_7037	chr18	83581941	83582404	+	0	NA	Intergenic	Intergenic	-256288	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA
chipseq_peak_1612	chr10	59326690	59327162	+	0	NA	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	3630	NM_001316371	18451	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding
chipseq_peak_12687	chr8	24258569	24259384	+	0	NA	Intergenic	Intergenic	179970	NM_026931	69068	Mm.25775	NM_026931		1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding
chipseq_peak_4781	chr15	8792079	8792654	+	0	NA	Intergenic	Charlie1|DNA|hAT-Charlie	-81559	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
chipseq_peak_9818	chr4	54774524	54775264	+	0	NA	Intergenic	Intergenic	-173051	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding
chipseq_peak_1886	chr10	101373814	101374415	+	0	NA	Intergenic	Intergenic	-307373	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
chipseq_peak_2942	chr12	49758107	49759588	+	0	NA	Intergenic	Intergenic	-277985	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_742	chr1	121822887	121823325	+	0	NA	Intergenic	Intergenic	-255126	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
chipseq_peak_9491	chr4	9771150	9771539	+	0	NA	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	759	NR_030693	320152	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA
chipseq_peak_13445	chr9	34638654	34638999	+	0	NA	intron (NM_001190912, intron 1 of 15)	intron (NM_001190912, intron 1 of 15)	150095	NM_001190912	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding
chipseq_peak_635	chr1	97562949	97563266	+	0	NA	Intergenic	Intergenic	98911	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding
chipseq_peak_7484	chr2	16466416	16466697	+	0	NA	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	110252	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding
chipseq_peak_384	chr1	56255030	56258315	+	0	NA	Intergenic	Intergenic	237694	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_5680	chr16	42782325	42782830	+	0	NA	intron (NR_040521, intron 1 of 3)	intron (NR_040521, intron 1 of 3)	93010	NR_040521	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA
chipseq_peak_3307	chr12	98549044	98549527	+	0	NA	intron (NM_029911, intron 1 of 6)	intron (NM_029911, intron 1 of 6)	25427	NM_001316666	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding
chipseq_peak_2811	chr12	32741557	32741846	+	0	NA	Intergenic	L1MA4|LINE|L1	-78634	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding
chipseq_peak_9941	chr4	78416823	78417210	+	0	NA	Intergenic	Intergenic	-177031	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_8515	chr3	21427397	21427890	+	0	NA	Intergenic	Intergenic	-649009	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
chipseq_peak_8803	chr3	63740043	63740378	+	0	NA	intron (NM_183191, intron 9 of 22)	intron (NM_183191, intron 9 of 22)	110781	NM_183191	269437	Mm.316391	NM_183191	ENSMUSG00000036834	Plch1	BC042549|PLC-eta-1|PLCeta1|Plcl3	phospholipase C, eta 1	protein-coding
chipseq_peak_10453	chr5	44902558	44902819	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-63513	NR_073013	75783	Mm.218472	NR_073013	ENSMUSG00000062496	4930431F12Rik	-	RIKEN cDNA 4930431F12 gene	ncRNA
chipseq_peak_7809	chr2	62489352	62490060	+	0	NA	Intergenic	Intergenic	-6053	NM_008100	14526	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding
chipseq_peak_7297	chr19	52068924	52069224	+	0	NA	Intergenic	B3|SINE|B2	-195223	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding
chipseq_peak_11965	chr6	140731157	140731894	+	0	NA	Intergenic	Intergenic	104640	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding
chipseq_peak_5395	chr15	92621574	92623026	+	0	NA	intron (NM_001164594, intron 1 of 7)	intron (NM_001164594, intron 1 of 7)	25191	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
chipseq_peak_4089	chr13	114466953	114467368	+	0	NA	Intergenic	Intergenic	-8209	NM_001301375	14313	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding
chipseq_peak_2393	chr11	67887891	67890136	+	0	NA	intron (NM_001291049, intron 7 of 14)	B2_Mm1t|SINE|B2	33140	NM_001291049	216835	Mm.158885	NM_173754	ENSMUSG00000020905	Usp43	-	ubiquitin specific peptidase 43	protein-coding
chipseq_peak_4880	chr15	20728250	20728612	+	0	NA	Intergenic	L1MA6|LINE|L1	-61681	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_12895	chr8	56128961	56129931	+	0	NA	Intergenic	Intergenic	-165106	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding
chipseq_peak_10023	chr4	88159561	88160325	+	0	NA	intron (NM_001081184, intron 5 of 43)	intron (NM_001081184, intron 5 of 43)	37903	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA
chipseq_peak_5299	chr15	70605206	70607347	+	0	NA	Intergenic	Intergenic	682043	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_1774	chr10	90493672	90495393	+	0	NA	intron (NM_001128086, intron 12 of 24)	intron (NM_001128086, intron 12 of 24)	-81195	NM_001177397	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_3147	chr12	72285168	72286100	+	0	NA	intron (NM_001286448, intron 1 of 6)	intron (NM_001286448, intron 1 of 6)	-48907	NM_001007596	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding
chipseq_peak_1038	chr1	169821963	169822640	+	0	NA	Intergenic	Intergenic	-74659	NM_009062	19736	Mm.41642	NM_009062	ENSMUSG00000038530	Rgs4	AA004315|AA597169|ESTM48|ESTM50	regulator of G-protein signaling 4	protein-coding
chipseq_peak_3448	chr13	16645448	16646522	+	0	NA	Intergenic	Intergenic	631510	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_5022	chr15	41414516	41414989	+	0	NA	Intergenic	Intergenic	-32730	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
chipseq_peak_5935	chr16	72605056	72605388	+	0	NA	Intergenic	Intergenic	-57927	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_11445	chr6	45455247	45455877	+	0	NA	intron (NM_001004357, intron 1 of 23)	intron (NM_001004357, intron 1 of 23)	395501	NM_001004357	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_10152	chr4	122890768	122891897	+	0	NA	Intergenic	Intergenic	-5275	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding
chipseq_peak_2576	chr11	109785367	109785698	+	0	NA	Intergenic	Intergenic	42514	NM_001162428	69324	Mm.31700	NM_027038	ENSMUSG00000020617	1700012B07Rik	1700069D21Rik	RIKEN cDNA 1700012B07 gene	protein-coding
chipseq_peak_1744	chr10	85178730	85179060	+	0	NA	intron (NM_007771, intron 1 of 12)	MTB|LTR|ERVL-MaLR	6159	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding
chipseq_peak_3441	chr13	16350038	16350694	+	0	NA	Intergenic	Intergenic	335891	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_1529	chr10	46717458	46719371	+	0	NA	Intergenic	Intergenic	473665	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA
chipseq_peak_6633	chr18	21593567	21594198	+	0	NA	intron (NM_001081403, intron 2 of 7)	intron (NM_001081403, intron 2 of 7)	-57683	NM_001271580	74644	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding
chipseq_peak_5228	chr15	65308009	65308359	+	0	NA	Intergenic	Intergenic	-385888	NM_001291903	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding
chipseq_peak_11378	chr6	36746617	36747179	+	0	NA	intron (NM_008973, intron 1 of 4)	intron (NM_008973, intron 1 of 4)	64463	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_5724	chr16	48051059	48051329	+	0	NA	Intergenic	Intergenic	-232541	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_11923	chr6	136304230	136305762	+	0	NA	Intergenic	ID_B1|SINE|B4	-22543	NM_001142734	668137	Mm.417085	NM_001142734	ENSMUSG00000094973	Gm8994	B020013A22Rik|EG668137	predicted gene 8994	protein-coding
chipseq_peak_8631	chr3	40282679	40283430	+	0	NA	Intergenic	Intergenic	239858	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_5702	chr16	46148711	46149239	+	0	NA	Intergenic	L1MCb|LINE|L1	6102	NM_001304528	11615	Mm.330692	NM_001304528		Gm4737	AL024110|EG11615|ENSMUSG00000048087	predicted gene 4737	protein-coding
chipseq_peak_2864	chr12	37980910	37981251	+	0	NA	intron (NM_178681, intron 1 of 24)	intron (NM_178681, intron 1 of 24)	100375	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding
chipseq_peak_8343	chr2	157858784	157859346	+	0	NA	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-55588	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding
chipseq_peak_5636	chr16	40109164	40110532	+	0	NA	Intergenic	Intergenic	1207503	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_4051	chr13	110062924	110063526	+	0	NA	intron (NM_023852, intron 4 of 4)	intron (NM_023852, intron 4 of 4)	159416	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
chipseq_peak_7691	chr2	50127611	50128873	+	0	NA	intron (NM_177139, intron 1 of 4)	intron (NM_177139, intron 1 of 4)	61813	NM_177139	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding
chipseq_peak_388	chr1	56331970	56333981	+	0	NA	Intergenic	Intergenic	304476	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_11149	chr6	8275177	8275572	+	0	NA	intron (NM_001302353, intron 2 of 4)	intron (NM_001302353, intron 2 of 4)	16086	NM_001302354	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding
chipseq_peak_1587	chr10	54993471	54994137	+	0	NA	Intergenic	Intergenic	917882	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA
chipseq_peak_2699	chr12	12602630	12602984	+	0	NA	Intergenic	Intergenic	-210332	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
chipseq_peak_11803	chr6	106281511	106281996	+	0	NA	intron (NM_173004, intron 5 of 19)	intron (NM_173004, intron 5 of 19)	162988	NM_001109751	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding
chipseq_peak_8981	chr3	84692835	84693180	+	0	NA	intron (NM_177260, intron 6 of 6)	intron (NM_177260, intron 6 of 6)	26815	NM_177260	320782	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding
chipseq_peak_10476	chr5	48130078	48131521	+	0	NA	intron (NR_111900, intron 4 of 35)	intron (NR_111900, intron 4 of 35)	-93143	NR_029798	723822		NR_029798	ENSMUSG00000065603	Mir218-1	Mirn218-1|mir-218-1	microRNA 218-1	ncRNA
chipseq_peak_7182	chr19	27510040	27510618	+	0	NA	Intergenic	Intergenic	80292	NR_027987	107372	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA
chipseq_peak_3747	chr13	80881809	80882098	+	0	NA	Intergenic	Intergenic	-1469	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding
chipseq_peak_815	chr1	133183357	133184154	+	0	NA	Intergenic	Intergenic	52589	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding
chipseq_peak_6369	chr17	65220035	65220281	+	0	NA	Intergenic	Intergenic	320624	NM_001289486	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding
chipseq_peak_11570	chr6	64533911	64534164	+	0	NA	intron (NM_008167, intron 14 of 15)	intron (NM_008167, intron 14 of 15)	-195109	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
chipseq_peak_1071	chr1	176074624	176075384	+	0	NA	intron (NM_001195816, intron 3 of 9)	intron (NM_001195816, intron 3 of 9)	138938	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding
chipseq_peak_13312	chr9	12960242	12960784	+	0	NA	Intergenic	Intergenic	145342	NR_040755	78219	Mm.414868	NR_040755		4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA
chipseq_peak_12423	chr7	109191058	109192626	+	0	NA	Intergenic	Intergenic	-16635	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding
chipseq_peak_8499	chr3	18933171	18934554	+	0	NA	Intergenic	Intergenic	229203	NM_028840	74252	Mm.200383	NM_028840		Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding
chipseq_peak_6023	chr16	76837167	76837862	+	0	NA	Intergenic	Intergenic	173367	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA
chipseq_peak_9290	chr3	140620065	140621159	+	0	NA	Intergenic	(TAGA)n|Simple_repeat|Simple_repeat	591743	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding
chipseq_peak_11159	chr6	9406005	9406460	+	0	NA	Intergenic	Intergenic	456213	NM_008751	18231	Mm.46954	NM_008751		Nxph1	C130005L03Rik	neurexophilin 1	protein-coding
chipseq_peak_1370	chr10	27029694	27030470	+	0	NA	intron (NM_008481, intron 50 of 63)	intron (NM_008481, intron 50 of 63)	257570	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
chipseq_peak_6942	chr18	66962743	66963815	+	0	NA	Intergenic	Intergenic	-13318	NR_040461	100503582	Mm.329508	NR_040461		Gm19784	-	predicted gene, 19784	ncRNA
chipseq_peak_9284	chr3	140003136	140004468	+	0	NA	Intergenic	Intergenic	-24447	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA
chipseq_peak_2302	chr11	40899337	40899777	+	0	NA	Intergenic	MER53|DNA|hAT	-144271	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding
chipseq_peak_10376	chr5	28704912	28705228	+	0	NA	intron (NR_015562, intron 4 of 6)	intron (NR_015562, intron 4 of 6)	-237969	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding
chipseq_peak_3783	chr13	82941650	82943236	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-244110	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_9696	chr4	32286220	32286843	+	0	NA	Intergenic	Intergenic	-130904	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology 2	protein-coding
chipseq_peak_12654	chr8	16062141	16063452	+	0	NA	intron (NM_053171, intron 36 of 69)	intron (NM_053171, intron 36 of 69)	106042	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_1911	chr10	105364563	105364883	+	0	NA	intron (NM_177368, intron 3 of 11)	intron (NM_177368, intron 3 of 11)	209756	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
chipseq_peak_13723	chr9	84099073	84099428	+	0	NA	intron (NM_001305935, intron 9 of 10)	intron (NM_001305935, intron 9 of 10)	150469	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding
chipseq_peak_478	chr1	69785196	69785609	+	0	NA	Intergenic	Intergenic	-41568	NM_001271533	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding
chipseq_peak_8299	chr2	143233837	143234462	+	0	NA	Intergenic	Intergenic	155657	NM_020595	57329	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding
chipseq_peak_1526	chr10	46331302	46332143	+	0	NA	Intergenic	RLTR15|LTR|ERVK	86973	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA
chipseq_peak_13994	chrX	50753421	50753963	+	0	NA	Intergenic	Intergenic	-87679	NM_001313744	70415	Mm.46254	NM_133729		Stk26	2610018G03Rik|Mst4	serine/threonine kinase 26	protein-coding
chipseq_peak_7817	chr2	62983209	62984236	+	0	NA	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	200565	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
chipseq_peak_5679	chr16	42748740	42749342	+	0	NA	intron (NR_040521, intron 1 of 3)	L1MB3|LINE|L1	126546	NR_040521	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA
chipseq_peak_6545	chr17	93103619	93105081	+	0	NA	Intergenic	Intergenic	-94667	NM_001315503	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
chipseq_peak_12869	chr8	54735919	54738002	+	0	NA	Intergenic	Intergenic	-12592	NM_001172152	244484	Mm.95281	NM_028220	ENSMUSG00000039375	Wdr17	3010002I12Rik|B230207L18Rik	WD repeat domain 17	protein-coding
chipseq_peak_1686	chr10	69742107	69742434	+	0	NA	intron (NM_170730, intron 1 of 17)	intron (NM_170730, intron 1 of 17)	-183262	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_2664	chr12	7321128	7322335	+	0	NA	Intergenic	Intergenic	58599	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_8851	chr3	69377367	69377690	+	0	NA	intron (NM_178726, intron 1 of 3)	L1MA6|LINE|L1	60610	NM_178726	242083	Mm.40577	NM_178726		Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding
chipseq_peak_4082	chr13	113669482	113670081	+	0	NA	Intergenic	Intergenic	-6105	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding
chipseq_peak_12364	chr7	92550933	92551305	+	0	NA	Intergenic	Intergenic	-10030	NM_001162918	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding
chipseq_peak_3929	chr13	97610715	97611174	+	0	NA	Intergenic	Intergenic	50944	NR_046157	328314	Mm.138047	NR_046157		Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA
chipseq_peak_3446	chr13	16446752	16447842	+	0	NA	Intergenic	Intergenic	432822	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_5791	chr16	55435513	55436778	+	0	NA	Intergenic	Intergenic	-58586	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA
chipseq_peak_5954	chr16	73294797	73295369	+	0	NA	Intergenic	Intergenic	631934	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_5158	chr15	57139170	57139550	+	0	NA	Intergenic	Intergenic	338265	NM_172378	210463	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding
chipseq_peak_6977	chr18	69576404	69580322	+	0	NA	intron (NM_001083967, intron 8 of 19)	intron (NM_001083967, intron 8 of 19)	232642	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
chipseq_peak_8598	chr3	35724027	35724644	+	0	NA	Intergenic	Intergenic	-29803	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding
chipseq_peak_372	chr1	56087418	56089019	+	0	NA	Intergenic	Intergenic	69240	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_2479	chr11	86436930	86438753	+	0	NA	intron (NR_030571, intron 1 of 2)	intron (NR_030571, intron 1 of 2)	21997	NR_030571	100124487		NR_030571	ENSMUSG00000077049	Mir467c	Mirn467c	microRNA 467c	ncRNA
chipseq_peak_1046	chr1	171036596	171038671	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	18707	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding
chipseq_peak_2111	chr10	128673986	128674851	+	0	NA	promoter-TSS (NM_173733)	promoter-TSS (NM_173733)	-500	NM_173733	211389	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding
chipseq_peak_10434	chr5	42396732	42397116	+	0	NA	Intergenic	Intergenic	328964	NR_131130	433882	Mm.319353	NR_131130		Gm16223	EG433882|OTTMUSG00000031875	predicted gene 16223	ncRNA
chipseq_peak_5598	chr16	33444475	33444921	+	0	NA	intron (NM_011749, intron 4 of 8)	intron (NM_011749, intron 4 of 8)	63923	NM_011749	22661	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding
chipseq_peak_12109	chr7	52668251	52668992	+	0	NA	Intergenic	Intergenic	-652905	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding
chipseq_peak_2650	chr12	6417401	6418761	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	962249	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_10932	chr5	115207221	115207809	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-13134	NM_001310712	29867	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding
chipseq_peak_7960	chr2	83089605	83090172	+	0	NA	Intergenic	Intergenic	-554690	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
chipseq_peak_14086	chrX	139432490	139433007	+	0	NA	Intergenic	Intergenic	-47619	NM_175326	102871	Mm.26565	NM_175326	ENSMUSG00000042498	D330045A20Rik	AI132325	RIKEN cDNA D330045A20 gene	protein-coding
chipseq_peak_5093	chr15	48389014	48389723	+	0	NA	intron (NM_001081391, intron 5 of 70)	intron (NM_001081391, intron 5 of 70)	402621	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
chipseq_peak_2819	chr12	33481064	33481350	+	0	NA	Intergenic	Intergenic	51583	NM_172253	28071	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding
chipseq_peak_9866	chr4	69740005	69740722	+	0	NA	Intergenic	Intergenic	670072	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding
chipseq_peak_3260	chr12	91517812	91519030	+	0	NA	intron (NM_001113404, intron 7 of 8)	intron (NM_001113404, intron 7 of 8)	71228	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding
chipseq_peak_267	chr1	41668382	41668834	+	0	NA	Intergenic	Intergenic	-487356	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_507	chr1	71788456	71789320	+	0	NA	Intergenic	Intergenic	-99224	NR_027659	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA
chipseq_peak_12985	chr8	68484031	68484671	+	0	NA	intron (NM_001252623, intron 4 of 10)	intron (NM_001252623, intron 4 of 10)	115892	NR_038181	73609	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA
chipseq_peak_1403	chr10	28735125	28735977	+	0	NA	intron (NM_001305663, intron 3 of 5)	L1MCa|LINE|L1	67191	NR_131208	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding
chipseq_peak_1824	chr10	95790729	95791924	+	0	NA	Intergenic	Intergenic	-149337	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding
chipseq_peak_8492	chr3	18640072	18640997	+	0	NA	Intergenic	Intergenic	-160057	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
chipseq_peak_3876	chr13	91228507	91229107	+	0	NA	Intergenic	Intergenic	-4820	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding
chipseq_peak_7290	chr19	50520210	50520649	+	0	NA	intron (NM_001252501, intron 1 of 25)	intron (NM_001252501, intron 1 of 25)	158217	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_6165	chr17	4972323	4972825	+	0	NA	Intergenic	Intergenic	-22500	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding
chipseq_peak_8541	chr3	26039457	26040158	+	0	NA	intron (NM_138666, intron 3 of 7)	intron (NM_138666, intron 3 of 7)	113500	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_13487	chr9	41891389	41892304	+	0	NA	Intergenic	Intergenic	232443	NM_011436	20660	Mm.121920	NM_011436		Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding
chipseq_peak_3027	chr12	58653681	58654058	+	0	NA	Intergenic	Intergenic	358148	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding
chipseq_peak_6187	chr17	11157393	11157979	+	0	NA	intron (NM_016694, intron 2 of 11)	intron (NM_016694, intron 2 of 11)	317302	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding
chipseq_peak_13776	chr9	95385412	95385702	+	0	NA	Intergenic	Intergenic	21713	NM_018763	54371	Mm.212446	NM_018763		Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding
chipseq_peak_11788	chr6	104755790	104756637	+	0	NA	intron (NM_017383, intron 7 of 22)	intron (NM_017383, intron 7 of 22)	263169	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_8830	chr3	67959530	67960492	+	0	NA	intron (NM_001113419, intron 1 of 10)	intron (NM_001113419, intron 1 of 10)	67791	NM_001113419	100505386	Mm.331064	NM_001113419	ENSMUSG00000102422	Gm21949	Iqcj-schip1|Schip-1-iqcj|Schip1	predicted gene, 21949	protein-coding
chipseq_peak_8847	chr3	68572090	68572471	+	0	NA	promoter-TSS (NM_013928)	promoter-TSS (NM_013928)	-88	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_12356	chr7	92329144	92329392	+	0	NA	intron (NM_011807, intron 14 of 22)	intron (NM_011807, intron 14 of 22)	94298	NM_001243047	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_12264	chr7	80655265	80655761	+	0	NA	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	19496	NR_040343	100504375	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	OTTMUSG00000027171	predicted gene 15880	ncRNA
chipseq_peak_4588	chr14	100720545	100720948	+	0	NA	Intergenic	Intergenic	479323	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding
chipseq_peak_3634	chr13	52866609	52866982	+	0	NA	intron (NM_016709, intron 6 of 9)	intron (NM_016709, intron 6 of 9)	62882	NM_016709	11992	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding
chipseq_peak_5891	chr16	67704414	67705432	+	0	NA	Intergenic	Intergenic	-84015	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_3519	chr13	29697043	29697596	+	0	NA	intron (NR_131896, intron 7 of 16)	intron (NR_131896, intron 7 of 16)	158354	NM_144536	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
chipseq_peak_6434	chr17	75786134	75786556	+	0	NA	Intergenic	B4A|SINE|B4	-74678	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
chipseq_peak_12936	chr8	61215496	61216095	+	0	NA	Intergenic	Intergenic	-8376	NM_021506	59009	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding
chipseq_peak_12441	chr7	112116734	112117511	+	0	NA	3' UTR (NM_015814, exon 8 of 8)	3' UTR (NM_015814, exon 8 of 8)	41935	NM_015814	50781	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148	dickkopf homolog 3 (Xenopus laevis)	protein-coding
chipseq_peak_5295	chr15	70387808	70388685	+	0	NA	Intergenic	Intergenic	464013	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_6130	chr16	96740173	96740856	+	0	NA	intron (NM_031174, intron 11 of 32)	Charlie1a|DNA|hAT-Charlie	272908	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding
chipseq_peak_8840	chr3	68255404	68257081	+	0	NA	intron (NM_001113420, intron 1 of 6)	L1ME3Cz|LINE|L1	191440	NM_001113421	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_5003	chr15	37786306	37787227	+	0	NA	intron (NM_134094, intron 1 of 6)	L1MB3|LINE|L1	5234	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding
chipseq_peak_3458	chr13	18057126	18057540	+	0	NA	Intergenic	Intergenic	42869	NR_046032	73992	Mm.159110	NR_046032		4930448F12Rik	-	RIKEN cDNA 4930448F12 gene	ncRNA
chipseq_peak_7129	chr19	21684725	21685348	+	0	NA	3' UTR (NM_146096, exon 4 of 4)	3' UTR (NM_146096, exon 4 of 4)	31727	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding
chipseq_peak_3924	chr13	97390113	97390926	+	0	NA	Intergenic	Intergenic	-44451	NR_110432	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA
chipseq_peak_6523	chr17	90550369	90550800	+	0	NA	intron (NM_020252, intron 17 of 22)	intron (NM_020252, intron 17 of 22)	-310585	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_6395	chr17	69176788	69178188	+	0	NA	intron (NM_013813, intron 1 of 21)	intron (NM_013813, intron 1 of 21)	20678	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding
chipseq_peak_7845	chr2	65973943	65974314	+	0	NA	intron (NM_001290666, intron 3 of 4)	MER63A|DNA|hAT-Blackjack	42263	NM_001290665	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding
chipseq_peak_10320	chr5	16292973	16293691	+	0	NA	intron (NM_009784, intron 10 of 37)	(T)n|Simple_repeat|Simple_repeat	-260163	NM_010427	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
chipseq_peak_5678	chr16	42717974	42718780	+	0	NA	Intergenic	Intergenic	157210	NR_040521	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA
chipseq_peak_13251	chr8	126971134	126971769	+	0	NA	promoter-TSS (NM_172762)	promoter-TSS (NM_172762)	-372	NM_172762	52202	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding
chipseq_peak_7209	chr19	30217254	30217561	+	0	NA	Intergenic	Intergenic	-15550	NM_010776	17195	Mm.30045	NM_010776	ENSMUSG00000024863	Mbl2	L-MBP|MBL|MBL-C|MBP-C	mannose-binding lectin (protein C) 2	protein-coding
chipseq_peak_7177	chr19	27066536	27067137	+	0	NA	Intergenic	Intergenic	-150184	NM_013703	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding
chipseq_peak_3390	chr13	6083294	6084119	+	0	NA	Intergenic	Intergenic	222217	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding
chipseq_peak_11338	chr6	33004614	33005004	+	0	NA	intron (NM_025336, intron 3 of 7)	intron (NM_025336, intron 3 of 7)	55343	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
chipseq_peak_8727	chr3	53994536	53995434	+	0	NA	Intergenic	Intergenic	-131178	NM_026435	67890	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|ENSMUSG00000074598|Gm10726	ubiquitin-fold modifier 1	protein-coding
chipseq_peak_13147	chr8	102656252	102657126	+	0	NA	intron (NM_009866, intron 8 of 12)	L1MB7|LINE|L1	128422	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_156	chr1	30145020	30145262	+	0	NA	Intergenic	Intergenic	718115	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
chipseq_peak_2603	chr11	111996300	111997628	+	0	NA	Intergenic	Intergenic	714392	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA
chipseq_peak_7131	chr19	21989871	21991678	+	0	NA	Intergenic	Intergenic	-148343	NM_001035241	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding
chipseq_peak_6841	chr18	54118946	54119545	+	0	NA	Intergenic	Intergenic	257132	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
chipseq_peak_12874	chr8	54834444	54835421	+	0	NA	intron (NM_001253754, intron 1 of 6)	L1_Rod|LINE|L1	55498	NM_001253754	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_9918	chr4	76617843	76618231	+	0	NA	intron (NM_011211, intron 9 of 39)	intron (NM_011211, intron 9 of 39)	-1339751	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_3854	chr13	89338666	89339029	+	0	NA	Intergenic	Intergenic	-201789	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding
chipseq_peak_10414	chr5	39775254	39776099	+	0	NA	Intergenic	Intergenic	-131045	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_7780	chr2	60130012	60130326	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	-4429	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding
chipseq_peak_13795	chr9	97627735	97628380	+	0	NA	intron (NM_022319, intron 2 of 17)	intron (NM_022319, intron 2 of 17)	-258099	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
chipseq_peak_11960	chr6	140004164	140005149	+	0	NA	intron (NM_054066, intron 9 of 13)	intron (NM_054066, intron 9 of 13)	36761	NM_054066	114875	Mm.50808	NM_054066	ENSMUSG00000030230	Plcz1	1700041H07Rik|PLCzeta	phospholipase C, zeta 1	protein-coding
chipseq_peak_549	chr1	78819621	78819961	+	0	NA	3' UTR (NM_021342, exon 2 of 2)	3' UTR (NM_021342, exon 2 of 2)	2842	NM_021342	57814	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding
chipseq_peak_9713	chr4	33958380	33959029	+	0	NA	Intergenic	Intergenic	34072	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding
chipseq_peak_10808	chr5	97134698	97135623	+	0	NA	Intergenic	Intergenic	-23564	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding
chipseq_peak_2305	chr11	41598909	41599531	+	0	NA	Intergenic	Intergenic	401494	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding
chipseq_peak_4716	chr14	117427719	117427982	+	0	NA	intron (NM_011821, intron 2 of 8)	intron (NM_011821, intron 2 of 8)	502553	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_9967	chr4	80838670	80840018	+	0	NA	intron (NM_001282014, intron 3 of 7)	intron (NM_001282014, intron 3 of 7)	5131	NM_001282014	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_312	chr1	47863962	47864895	+	0	NA	Intergenic	Intergenic	-397303	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_7237	chr19	37177933	37178330	+	0	NA	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-2068	NM_001290826	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding
chipseq_peak_1603	chr10	58559192	58560092	+	0	NA	intron (NM_001162956, intron 13 of 15)	Lx7|LINE|L1	61705	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding
chipseq_peak_13736	chr9	86319706	86320013	+	0	NA	intron (NM_027394, intron 9 of 9)	intron (NM_027394, intron 9 of 9)	145057	NM_027394	70348	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding
chipseq_peak_10701	chr5	79299816	79301428	+	0	NA	intron (NR_035474, intron 2 of 4)	intron (NR_035474, intron 2 of 4)	215282	NR_035474	100316701		NR_035474	ENSMUSG00000089570	Mir669m-1	mmu-mir-669m-1	microRNA 669m-1	ncRNA
chipseq_peak_9652	chr4	27896340	27896739	+	0	NA	Intergenic	Intergenic	-916592	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_5262	chr15	66775965	66776737	+	0	NA	intron (NM_009375, intron 41 of 47)	intron (NM_009375, intron 41 of 47)	55478	NM_009192	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding
chipseq_peak_351	chr1	54742679	54743176	+	0	NA	intron (NM_001081433, intron 10 of 27)	intron (NM_001081433, intron 10 of 27)	183460	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding
chipseq_peak_1889	chr10	101680757	101682318	+	0	NA	promoter-TSS (NM_001205098)	promoter-TSS (NM_001205098)	50	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
chipseq_peak_8093	chr2	113057897	113059320	+	0	NA	Intergenic	Intergenic	-28277	NM_177652	20192	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding
chipseq_peak_3386	chr13	5573427	5574851	+	0	NA	Intergenic	Intergenic	283953	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
chipseq_peak_8842	chr3	68296638	68297368	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	-171180	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_4250	chr14	35393484	35394297	+	0	NA	intron (NM_008166, intron 8 of 15)	intron (NM_008166, intron 8 of 15)	418088	NM_001033766	239036	Mm.239970	NM_001033766	ENSMUSG00000041068	4930596D02Rik	-	RIKEN cDNA 4930596D02 gene	protein-coding
chipseq_peak_11637	chr6	81801782	81802238	+	0	NA	Intergenic	Intergenic	93653	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA
chipseq_peak_5858	chr16	64312616	64313165	+	0	NA	Intergenic	L1M5|LINE|L1	166244	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding
chipseq_peak_6565	chr18	7199617	7200435	+	0	NA	intron (NM_001081393, intron 17 of 20)	intron (NM_001081393, intron 17 of 20)	97875	NM_001081393	74934	Mm.107918	NM_001081393	ENSMUSG00000061802	Armc4	4930463I21Rik|b2b227.1Clo|b2b643Clo	armadillo repeat containing 4	protein-coding
chipseq_peak_13462	chr9	40364338	40364901	+	0	NA	intron (NM_172768, intron 2 of 19)	intron (NM_172768, intron 2 of 19)	31147	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA
chipseq_peak_2560	chr11	107213659	107213955	+	0	NA	intron (NM_145823, intron 9 of 9)	intron (NM_145823, intron 9 of 9)	-24426	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding
chipseq_peak_10276	chr5	10861876	10862434	+	0	NA	Intergenic	Intergenic	-2874	NR_003596	623849	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo
chipseq_peak_8755	chr3	55873052	55874409	+	0	NA	exon (NM_030595, exon 36 of 58)	exon (NM_030595, exon 36 of 58)	26625	NR_033592	71182	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo
chipseq_peak_7898	chr2	74991527	74992242	+	0	NA	Intergenic	Intergenic	166072	NM_016804	53375	Mm.292613	NM_016804		Mtx2	1500012G02Rik	metaxin 2	protein-coding
chipseq_peak_3343	chr12	108417473	108418002	+	0	NA	intron (NM_001043336, intron 1 of 21)	intron (NM_001043336, intron 1 of 21)	-5079	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding
chipseq_peak_99	chr1	22255039	22256103	+	0	NA	Intergenic	Intergenic	177272	NM_053270	116837	Mm.60061	NM_053270		Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding
chipseq_peak_8603	chr3	37090638	37091217	+	0	NA	intron (NM_009350, intron 9 of 11)	MLTR14|LTR|ERV1	27271	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding
chipseq_peak_5019	chr15	41163646	41164127	+	0	NA	Intergenic	Intergenic	-283596	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
chipseq_peak_5625	chr16	39109325	39109843	+	0	NA	Intergenic	Intergenic	207239	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_5951	chr16	73181922	73182662	+	0	NA	Intergenic	Intergenic	519143	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_6335	chr17	61033727	61034314	+	0	NA	Intergenic	Intergenic	1847297	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_6675	chr18	25239654	25241509	+	0	NA	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	71561	NM_001033532	225289	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding
chipseq_peak_12338	chr7	91551222	91551570	+	0	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	460610	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_6668	chr18	24166373	24167551	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-38382	NM_013814	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
chipseq_peak_3647	chr13	57165077	57165590	+	0	NA	Intergenic	Intergenic	-269544	NM_001302373	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding
chipseq_peak_13551	chr9	51507299	51507908	+	0	NA	Intergenic	Intergenic	-178686	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding
chipseq_peak_7356	chr2	4036028	4037272	+	0	NA	Intergenic	Intergenic	104491	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA
chipseq_peak_11972	chr6	143239071	143239988	+	0	NA	Intergenic	Intergenic	-6359	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA
chipseq_peak_1920	chr10	105993175	105993663	+	0	NA	Intergenic	Intergenic	151940	NM_025602	52713	Mm.339224	NM_025602		Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding
chipseq_peak_12475	chr7	117699516	117700156	+	0	NA	Intergenic	Intergenic	318857	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_951	chr1	156996762	156997465	+	0	NA	Intergenic	Intergenic	-57487	NR_027640	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
chipseq_peak_12900	chr8	56699359	56699660	+	0	NA	Intergenic	Intergenic	148375	NM_015791	50753	Mm.251174	NM_015791		Fbxo8	Fbx8	F-box protein 8	protein-coding
chipseq_peak_4470	chr14	81235207	81235600	+	0	NA	Intergenic	Intergenic	1235101	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_2950	chr12	49944758	49947553	+	0	NA	Intergenic	Intergenic	-465293	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_13146	chr8	102553264	102554178	+	0	NA	Intergenic	Intergenic	231390	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_8777	chr3	57634660	57635496	+	0	NA	Intergenic	Intergenic	16606	NM_175095	52245	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding
chipseq_peak_11283	chr6	23491862	23492332	+	0	NA	intron (NM_153163, intron 8 of 29)	intron (NM_153163, intron 8 of 29)	158208	NM_198251	386611	Mm.436547	NM_198251	ENSMUSG00000051956	Rnf133	Greul2	ring finger protein 133	protein-coding
chipseq_peak_8281	chr2	142505967	142506312	+	0	NA	Intergenic	Intergenic	395325	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_9665	chr4	29525697	29526827	+	0	NA	Intergenic	L1MB8|LINE|L1	713117	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_3389	chr13	5952729	5953277	+	0	NA	Intergenic	Intergenic	91514	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding
chipseq_peak_2395	chr11	68163978	68165367	+	0	NA	intron (NM_018768, intron 7 of 7)	intron (NM_018768, intron 7 of 7)	-56220	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA
chipseq_peak_11926	chr6	136547881	136552012	+	0	NA	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	31095	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding
chipseq_peak_6289	chr17	51002569	51004372	+	0	NA	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	155908	NM_001285993	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding
chipseq_peak_6415	chr17	72173794	72174107	+	0	NA	intron (NM_007439, intron 4 of 28)	intron (NM_007439, intron 4 of 28)	392003	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding
chipseq_peak_2243	chr11	34688989	34689295	+	0	NA	intron (NM_033374, intron 20 of 51)	intron (NM_033374, intron 20 of 51)	94763	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding
chipseq_peak_12633	chr8	10493168	10493526	+	0	NA	intron (NM_001081397, intron 23 of 35)	L1MD|LINE|L1	339424	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
chipseq_peak_3544	chr13	39544239	39544543	+	0	NA	Intergenic	Intergenic	-583516	NM_001170431	108652	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding
chipseq_peak_9648	chr4	27418532	27418942	+	0	NA	Intergenic	Intergenic	-713288	NR_040656	75360	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA
chipseq_peak_12414	chr7	100816470	100817760	+	0	NA	intron (NM_178764, intron 4 of 8)	intron (NM_178764, intron 4 of 8)	46298	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding
chipseq_peak_8138	chr2	121660788	121661365	+	0	NA	intron (NM_172673, intron 1 of 14)	intron (NM_172673, intron 1 of 14)	145981	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding
chipseq_peak_1229	chr10	5159569	5160320	+	0	NA	intron (NM_001079686, intron 9 of 54)	intron (NM_001079686, intron 9 of 54)	34763	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756	spectrin repeat containing, nuclear envelope 1	protein-coding
chipseq_peak_2526	chr11	100622583	100623241	+	0	NA	promoter-TSS (NM_028024)	promoter-TSS (NM_028024)	-43	NM_028024	71966	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding
chipseq_peak_673	chr1	104137102	104137592	+	0	NA	Intergenic	Intergenic	-631472	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_1461	chr10	37407356	37407760	+	0	NA	Intergenic	Intergenic	-268632	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
chipseq_peak_6129	chr16	96575760	96576117	+	0	NA	Intergenic	Intergenic	108332	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding
chipseq_peak_3843	chr13	85829928	85830239	+	0	NA	Intergenic	Intergenic	216712	NM_007749	12867	Mm.378898	NM_007749		Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding
chipseq_peak_874	chr1	141911512	141912332	+	0	NA	Intergenic	Intergenic	-1255520	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_9090	chr3	113856207	113856757	+	0	NA	Intergenic	Intergenic	-174058	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding
chipseq_peak_3072	chr12	65258964	65259526	+	0	NA	Intergenic	Intergenic	33728	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding
chipseq_peak_9702	chr4	32530547	32532112	+	0	NA	intron (NM_001109661, intron 2 of 4)	intron (NM_001109661, intron 2 of 4)	40333	NR_026843	414068	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA
chipseq_peak_5537	chr16	23852093	23852315	+	0	NA	Intergenic	Intergenic	38640	NM_009215	20604	Mm.2453	NM_009215	ENSMUSG00000004366	Sst	SOM|SRIF|SS|Smst	somatostatin	protein-coding
chipseq_peak_10327	chr5	16999271	17000275	+	0	NA	Intergenic	Intergenic	445872	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
chipseq_peak_10290	chr5	13468912	13470749	+	0	NA	intron (NM_009152, intron 3 of 16)	intron (NM_009152, intron 3 of 16)	70521	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
chipseq_peak_216	chr1	35551163	35552016	+	0	NA	Intergenic	L1MD1|LINE|L1	-516811	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding
chipseq_peak_4863	chr15	19360388	19361092	+	0	NA	Intergenic	Intergenic	540411	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_10811	chr5	97289303	97291097	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	102130	NM_001033191	97243	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding
chipseq_peak_8397	chr2	170675742	170676220	+	0	NA	Intergenic	Intergenic	-55826	NM_001163686	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding
chipseq_peak_343	chr1	54061107	54061567	+	0	NA	intron (NM_001001883, intron 1 of 28)	intron (NM_001001883, intron 1 of 28)	133697	NM_172655	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
chipseq_peak_4199	chr14	23474772	23475872	+	0	NA	intron (NM_001253373, intron 13 of 27)	intron (NM_001253373, intron 13 of 27)	-380751	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA
chipseq_peak_6382	chr17	68291556	68292227	+	0	NA	intron (NM_177278, intron 1 of 20)	intron (NM_177278, intron 1 of 20)	18094	NM_177278	320858	Mm.137356	NM_177278		L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding
chipseq_peak_1932	chr10	106567281	106569019	+	0	NA	intron (NM_001205341, intron 3 of 31)	ORR1F|LTR|ERVL-MaLR	32905	NR_131027	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA
chipseq_peak_3416	chr13	9611190	9611627	+	0	NA	intron (NM_001081426, intron 22 of 36)	intron (NM_001081426, intron 22 of 36)	153906	NM_001199141	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding
chipseq_peak_13811	chr9	101445737	101446884	+	0	NA	Intergenic	Intergenic	104116	NR_110509	102633035	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA
chipseq_peak_8956	chr3	81924668	81925299	+	0	NA	Intergenic	MIR3|SINE|MIR	-7633	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
chipseq_peak_3110	chr12	69357165	69357522	+	0	NA	promoter-TSS (NM_025441)	promoter-TSS (NM_025441)	-167	NM_025441	66244	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding
chipseq_peak_7746	chr2	57145833	57146724	+	0	NA	intron (NR_040356, intron 1 of 2)	intron (NR_040356, intron 1 of 2)	-22275	NM_001139509	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding
chipseq_peak_6950	chr18	67681286	67682158	+	0	NA	intron (NM_001127177, intron 4 of 8)	intron (NM_001127177, intron 4 of 8)	40123	NM_134138	107047	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding
chipseq_peak_2681	chr12	9991273	9991663	+	0	NA	Intergenic	Intergenic	-378503	NM_001310582	70881	Mm.272843	NM_027588	ENSMUSG00000020622	Nt5c1b	4921514H13Rik|AIRP|CN-IB|cN1B	5'-nucleotidase, cytosolic IB	protein-coding
chipseq_peak_9687	chr4	31461509	31463429	+	0	NA	Intergenic	Intergenic	-501638	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_12688	chr8	24626122	24627454	+	0	NA	intron (NM_010084, intron 16 of 19)	intron (NM_010084, intron 16 of 19)	-29836	NM_008324	15930	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding
chipseq_peak_1846	chr10	98645948	98647193	+	0	NA	Intergenic	Intergenic	-268582	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding
chipseq_peak_7668	chr2	47822781	47823149	+	0	NA	Intergenic	Intergenic	-991144	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_9378	chr3	151001837	151004639	+	0	NA	Intergenic	Intergenic	-434644	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_7652	chr2	45092323	45093180	+	0	NA	intron (NM_001289521, intron 1 of 8)	intron (NM_001289521, intron 1 of 8)	17526	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding
chipseq_peak_14010	chrX	59179117	59179470	+	0	NA	intron (NM_001290414, intron 3 of 6)	intron (NM_001290414, intron 3 of 6)	-13205	NM_001290415	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding
chipseq_peak_11002	chr5	129137243	129138888	+	0	NA	intron (NM_001081342, intron 10 of 25)	intron (NM_001081342, intron 10 of 25)	41315	NM_001081342	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding
chipseq_peak_1619	chr10	63894502	63894970	+	0	NA	intron (NM_001164376, intron 7 of 17)	intron (NM_001164376, intron 7 of 17)	73681	NM_001164519	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding
chipseq_peak_1777	chr10	90724078	90724457	+	0	NA	intron (NM_181398, intron 3 of 9)	intron (NM_181398, intron 3 of 9)	147576	NM_001177398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_13870	chr9	108707266	108707638	+	0	NA	intron (NM_008924, intron 1 of 10)	intron (NM_008924, intron 1 of 10)	15309	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding
chipseq_peak_10966	chr5	122051334	122052067	+	0	NA	Intergenic	Intergenic	-1849	NM_001312908	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding
chipseq_peak_6229	chr17	30752146	30752754	+	0	NA	intron (NM_013811, intron 55 of 92)	B3A|SINE|B2	125514	NM_013811	13417	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding
chipseq_peak_9392	chr3	152193403	152194083	+	0	NA	5' UTR (NM_025926, exon 1 of 3)	5' UTR (NM_025926, exon 1 of 3)	102	NM_025926	67035	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ (Hsp40) homolog, subfamily B, member 4	protein-coding
chipseq_peak_4213	chr14	28143932	28144445	+	0	NA	intron (NM_177814, intron 13 of 15)	intron (NM_177814, intron 13 of 15)	-361285	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
chipseq_peak_4050	chr13	110008345	110008890	+	0	NA	Intergenic	Intergenic	104808	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
chipseq_peak_8569	chr3	29421563	29422116	+	0	NA	intron (NM_029412, intron 5 of 14)	intron (NM_029412, intron 5 of 14)	5016	NR_030422	791072		NR_030422	ENSMUSG00000076120	Mir551b	Mirn551b|mir-551b	microRNA 551b	ncRNA
chipseq_peak_7978	chr2	92299888	92302892	+	0	NA	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	69667	NM_001290774	228366	Mm.31158	NM_172670	ENSMUSG00000040434	Gyltl1b	5730485C17Rik|AI891893|Large2|Largel|mKIAA4105	glycosyltransferase-like 1B	protein-coding
chipseq_peak_13211	chr8	114007027	114007604	+	0	NA	Intergenic	Intergenic	-126259	NM_024437	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding
chipseq_peak_13322	chr9	16020066	16020472	+	0	NA	intron (NM_001080814, intron 6 of 24)	intron (NM_001080814, intron 6 of 24)	-145713	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
chipseq_peak_9160	chr3	120360546	120361099	+	0	NA	Intergenic	Intergenic	525910	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_7887	chr2	72426725	72427191	+	0	NA	intron (NM_023057, intron 16 of 19)	intron (NM_023057, intron 16 of 19)	-49261	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding
chipseq_peak_9509	chr4	12983735	12984945	+	0	NA	Intergenic	Intergenic	77503	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_3902	chr13	93855191	93855619	+	0	NA	intron (NM_009712, intron 4 of 7)	intron (NM_009712, intron 4 of 7)	64628	NR_049198	100885837		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA
chipseq_peak_10530	chr5	57118069	57120597	+	0	NA	Intergenic	Intergenic	598586	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_8109	chr2	114361845	114362783	+	0	NA	Intergenic	Intergenic	-160882	NM_175466	228491	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding
chipseq_peak_11432	chr6	43395259	43395985	+	0	NA	intron (NM_001311111, intron 7 of 7)	intron (NM_001311111, intron 7 of 7)	-46807	NR_045988	319812	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA
chipseq_peak_11533	chr6	55920019	55920626	+	0	NA	intron (NM_001081665, intron 9 of 13)	intron (NM_001081665, intron 9 of 13)	83304	NM_001081665	232016	Mm.333084	NM_001081665	ENSMUSG00000037973	Ccdc129	D530004J12Rik|Gm458	coiled-coil domain containing 129	protein-coding
chipseq_peak_3672	chr13	59571400	59572890	+	0	NA	Intergenic	Intergenic	13078	NR_045633	319469	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA
chipseq_peak_14120	chrX	160750145	160750534	+	0	NA	Intergenic	Intergenic	-17674	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding
chipseq_peak_13321	chr9	16011216	16011825	+	0	NA	intron (NM_001080814, intron 6 of 24)	L1MC5|LINE|L1	-136964	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
chipseq_peak_2399	chr11	68631064	68632656	+	0	NA	Intergenic	Intergenic	44823	NM_177779	276920	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding
chipseq_peak_13530	chr9	49618533	49619220	+	0	NA	intron (NM_001113204, intron 1 of 18)	intron (NM_001113204, intron 1 of 18)	100588	NR_029465	100036537	Mm.437541	NR_029465		Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA
chipseq_peak_1556	chr10	51595064	51595441	+	0	NA	Intergenic	Intergenic	-4792	NM_029894	77296	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding
chipseq_peak_9475	chr4	7271825	7272150	+	0	NA	Intergenic	Intergenic	-281264	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_11596	chr6	75756231	75756640	+	0	NA	Intergenic	Intergenic	-1486282	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_11442	chr6	44814258	44815773	+	0	NA	Intergenic	Intergenic	-245046	NM_001004357	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_2582	chr11	110561933	110563332	+	0	NA	Intergenic	Intergenic	163510	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
chipseq_peak_13076	chr8	90657166	90658042	+	0	NA	Intergenic	Intergenic	-171231	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding
chipseq_peak_11162	chr6	11357506	11358187	+	0	NA	Intergenic	Intergenic	-383468	NR_033776	57866	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA
chipseq_peak_12709	chr8	30289249	30289737	+	0	NA	Intergenic	Intergenic	-278902	NR_045856	71314	Mm.158666	NR_045856	ENSMUSG00000097044	4933433F19Rik	-	RIKEN cDNA 4933433F19 gene	ncRNA
chipseq_peak_5119	chr15	51834060	51834609	+	0	NA	intron (NM_080635, intron 2 of 7)	intron (NM_080635, intron 2 of 7)	31127	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
chipseq_peak_4016	chr13	108039677	108039931	+	0	NA	Intergenic	Intergenic	-4670	NM_001048250	75616	Mm.491164	NM_001048250		Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding
chipseq_peak_13540	chr9	50905319	50905843	+	0	NA	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	48657	NM_001034085	73699	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding
chipseq_peak_8032	chr2	101665355	101666082	+	0	NA	Intergenic	Intergenic	-12702	NM_001303273	22034	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding
chipseq_peak_10830	chr5	98198198	98198824	+	0	NA	Intergenic	Intergenic	17642	NM_029947	77630	Mm.332511	NM_029947		Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding
chipseq_peak_7853	chr2	66350332	66351087	+	0	NA	intron (NM_001313997, intron 2 of 26)	intron (NM_001313997, intron 2 of 26)	90128	NM_001313997	20265	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding
chipseq_peak_2437	chr11	78831573	78832295	+	0	NA	intron (NM_001076681, intron 1 of 3)	intron (NM_001076681, intron 1 of 3)	5339	NM_001076681	66274	Mm.258932	NM_001076681		Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding
chipseq_peak_2847	chr12	36456106	36456504	+	0	NA	intron (NM_178629, intron 3 of 9)	L1MCa|LINE|L1	40689	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA
chipseq_peak_4308	chr14	55094765	55095143	+	0	NA	5' UTR (NM_153083, exon 1 of 2)	5' UTR (NM_153083, exon 1 of 2)	170	NM_153083	105663	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding
chipseq_peak_3946	chr13	99215962	99216335	+	0	NA	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	31325	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding
chipseq_peak_3619	chr13	47896652	47897053	+	0	NA	Intergenic	Intergenic	-13583	NR_045156	619327	Mm.412752	NR_045156		G630093K05Rik	-	RIKEN cDNA G630093K05 gene	ncRNA
chipseq_peak_10488	chr5	49783377	49784295	+	0	NA	Intergenic	Intergenic	275160	NM_133911	70693	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding
chipseq_peak_4227	chr14	29882817	29883058	+	0	NA	Intergenic	Intergenic	-85443	NM_019979	80795	Mm.104491	NM_019979	ENSMUSG00000042682	Selk	1110001C03Rik|AA673253|HSPC030|Hsp30	selenoprotein K	protein-coding
chipseq_peak_8699	chr3	52611521	52612400	+	0	NA	Intergenic	Intergenic	-127764	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA
chipseq_peak_10448	chr5	44639071	44639734	+	0	NA	intron (NM_001077398, intron 2 of 8)	L3|LINE|CR1	160344	NM_001077398	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding
chipseq_peak_11883	chr6	117486092	117486530	+	0	NA	Intergenic	Intergenic	265458	NR_045731	72263	Mm.443289	NR_045731	ENSMUSG00000099869	1700030F04Rik	-	RIKEN cDNA 1700030F04 gene	ncRNA
chipseq_peak_3830	chr13	84757750	84759248	+	0	NA	Intergenic	Intergenic	-430978	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
chipseq_peak_6131	chr16	96885709	96886135	+	0	NA	intron (NM_031174, intron 3 of 32)	intron (NM_031174, intron 3 of 32)	284813	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding
chipseq_peak_12466	chr7	117146074	117147201	+	0	NA	Intergenic	Intergenic	-234342	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_13865	chr9	107002708	107003783	+	0	NA	intron (NM_153413, intron 14 of 52)	intron (NM_153413, intron 14 of 52)	-111307	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding
chipseq_peak_2818	chr12	33130381	33131250	+	0	NA	intron (NR_015602, intron 4 of 5)	L1ME3B|LINE|L1	16771	NR_015602	320046	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA
chipseq_peak_11931	chr6	137261826	137262542	+	0	NA	intron (NM_001164401, intron 1 of 25)	intron (NM_001164401, intron 1 of 25)	9885	NM_001164401	19277	Mm.186361	NM_011216		Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
chipseq_peak_10641	chr5	71608834	71609167	+	0	NA	intron (NM_010251, intron 8 of 8)	intron (NM_010251, intron 8 of 8)	49308	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding
chipseq_peak_197	chr1	33201485	33202210	+	0	NA	Intergenic	Intergenic	467947	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding
chipseq_peak_10825	chr5	97952931	97954553	+	0	NA	intron (NM_133738, intron 12 of 16)	intron (NM_133738, intron 12 of 16)	77220	NM_133738	71914	Mm.24842	NM_133738		Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding
chipseq_peak_9155	chr3	119284458	119284902	+	0	NA	intron (NM_170778, intron 19 of 22)	intron (NM_170778, intron 19 of 22)	498708	NM_019550	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
chipseq_peak_12980	chr8	68161431	68162186	+	0	NA	Intergenic	L1MA4|LINE|L1	-114720	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding
chipseq_peak_10373	chr5	25695211	25695512	+	0	NA	intron (NM_020570, intron 2 of 2)	intron (NM_020570, intron 2 of 2)	10436	NM_020570	57434	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding
chipseq_peak_11688	chr6	97462139	97462723	+	0	NA	intron (NM_145148, intron 2 of 23)	B3|SINE|B2	155226	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013	FERM domain containing 4B	protein-coding
chipseq_peak_4981	chr15	34330938	34331426	+	0	NA	intron (NM_016762, intron 2 of 18)	intron (NM_016762, intron 2 of 18)	24501	NM_016762	17181	Mm.396856	NM_016762	ENSMUSG00000022324	Matn2	Crtm2|matrilin-2	matrilin 2	protein-coding
chipseq_peak_11476	chr6	49779416	49781680	+	0	NA	Intergenic	Intergenic	-42162	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding
chipseq_peak_11247	chr6	18560747	18561042	+	0	NA	Intergenic	L1MEf|LINE|L1	-46069	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_5254	chr15	66591631	66592882	+	0	NA	intron (NM_001081409, intron 2 of 20)	intron (NM_001081409, intron 2 of 20)	14684	NM_001081409	239510	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding
chipseq_peak_11771	chr6	103676771	103677408	+	0	NA	intron (NM_007697, intron 9 of 26)	intron (NM_007697, intron 9 of 26)	166213	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_10911	chr5	111943205	111944735	+	0	NA	Intergenic	Intergenic	-182242	NR_045832	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA
chipseq_peak_4620	chr14	105731498	105732392	+	0	NA	Intergenic	Intergenic	-108175	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
chipseq_peak_6591	chr18	13869058	13869545	+	0	NA	intron (NM_145492, intron 3 of 7)	intron (NM_145492, intron 3 of 7)	103432	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
chipseq_peak_6572	chr18	8928577	8928856	+	0	NA	Intergenic	Intergenic	-284140	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled homolog 8 (Drosophila)	protein-coding
chipseq_peak_3189	chr12	77377574	77377967	+	0	NA	intron (NR_045554, intron 6 of 11)	MER44B|DNA|TcMar-Tigger	-11094	NM_001252615	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding
chipseq_peak_3882	chr13	91611031	91612257	+	0	NA	intron (NM_024186, intron 4 of 15)	intron (NM_024186, intron 4 of 15)	-129877	NM_028790	74156	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding
chipseq_peak_12781	chr8	42181212	42181955	+	0	NA	Intergenic	Intergenic	354316	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA
chipseq_peak_11730	chr6	100732737	100733178	+	0	NA	intron (NM_198612, intron 1 of 6)	intron (NM_198612, intron 1 of 6)	28223	NM_198612	232313	Mm.272037	NM_198612		Gxylt2	Glt8d4|Gm152	glucoside xylosyltransferase 2	protein-coding
chipseq_peak_11886	chr6	118520652	118521459	+	0	NA	intron (NM_001081112, intron 25 of 33)	intron (NM_001081112, intron 25 of 33)	41201	NM_001081112	232339	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding
chipseq_peak_3574	chr13	44073102	44073725	+	0	NA	Intergenic	Intergenic	-47754	NR_045285	328235	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA
chipseq_peak_2544	chr11	103028168	103029035	+	0	NA	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	39	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding
chipseq_peak_4193	chr14	21607560	21609079	+	0	NA	intron (NM_001205241, intron 2 of 16)	intron (NM_001205241, intron 2 of 16)	106257	NM_001013826	435391	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding
chipseq_peak_7109	chr19	19329784	19330020	+	0	NA	Intergenic	L1M5|LINE|L1	-218706	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
chipseq_peak_4590	chr14	101428854	101429247	+	0	NA	Intergenic	Intergenic	180141	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding
chipseq_peak_1713	chr10	73636678	73637416	+	0	NA	Intergenic	Intergenic	-184820	NM_001142747	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
chipseq_peak_12383	chr7	95725709	95726071	+	0	NA	Intergenic	Intergenic	-445354	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
chipseq_peak_9356	chr3	149258680	149260230	+	0	NA	Intergenic	Intergenic	-15282	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_13059	chr8	86712937	86714228	+	0	NA	intron (NM_025827, intron 13 of 14)	intron (NM_025827, intron 13 of 14)	-32117	NR_027829	666945	Mm.391806	NR_027829		Gm10638	ENSMUSG00000074178	predicted gene 10638	ncRNA
chipseq_peak_12533	chr7	131401555	131403444	+	0	NA	intron (NM_175115, intron 1 of 3)	B4A|SINE|B4	7979	NM_175115	67143	Mm.334273	NM_175115	ENSMUSG00000040167	Ikzf5	2610034F18Rik|PEGASUS|Zfpn1a5	IKAROS family zinc finger 5	protein-coding
chipseq_peak_4029	chr13	109278865	109279246	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-45689	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_6178	chr17	9624168	9624413	+	0	NA	Intergenic	Intergenic	45414	NM_001163836	67543	Mm.26987	NM_026226	ENSMUSG00000046173	Pabpc6	4932702K14Rik|AI428050|Pabpc3	poly(A) binding protein, cytoplasmic 6	protein-coding
chipseq_peak_10127	chr4	109185613	109186095	+	0	NA	intron (NM_133885, intron 1 of 22)	MER46C|DNA|TcMar-Tigger	16418	NM_133885	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding
chipseq_peak_6432	chr17	75647085	75647763	+	0	NA	Intergenic	Intergenic	-95478	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding
chipseq_peak_12673	chr8	17612307	17612708	+	0	NA	Intergenic	Intergenic	-77122	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
chipseq_peak_1505	chr10	43400224	43400870	+	0	NA	intron (NM_027772, intron 6 of 7)	intron (NM_027772, intron 6 of 7)	-78593	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding
chipseq_peak_6775	chr18	42714652	42715753	+	0	NA	intron (NR_073583, intron 4 of 8)	intron (NR_073583, intron 4 of 8)	-135550	NM_181543	240239	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding
chipseq_peak_1183	chr1	189165643	189166079	+	0	NA	Intergenic	Intergenic	-158021	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
chipseq_peak_6467	chr17	82607297	82609125	+	0	NA	Intergenic	Intergenic	470014	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
chipseq_peak_10885	chr5	110967468	110969127	+	0	NA	intron (NM_001267622, intron 2 of 22)	CT-rich|Low_complexity|Low_complexity	-35847	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_1154	chr1	184365014	184365387	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	192491	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA
chipseq_peak_10006	chr4	87017826	87018547	+	0	NA	intron (NM_172426, intron 7 of 10)	intron (NM_172426, intron 7 of 10)	143772	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding
chipseq_peak_1290	chr10	14451879	14452311	+	0	NA	intron (NM_001002268, intron 5 of 24)	intron (NM_001002268, intron 5 of 24)	92941	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding
chipseq_peak_4565	chr14	95687473	95689118	+	0	NA	Intergenic	Intergenic	-192971	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding
chipseq_peak_2167	chr11	18670834	18671516	+	0	NA	Intergenic	B3|SINE|B2	347794	NM_010789	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding
chipseq_peak_12347	chr7	91862358	91863304	+	0	NA	intron (NM_011807, intron 4 of 22)	intron (NM_011807, intron 4 of 22)	-199563	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_1627	chr10	64406625	64406925	+	0	NA	intron (NM_001164376, intron 9 of 17)	intron (NM_001164376, intron 9 of 17)	-316520	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_4300	chr14	51883799	51885085	+	0	NA	promoter-TSS (NM_001029990)	promoter-TSS (NM_001029990)	-400	NM_001029990	52535	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding
chipseq_peak_3632	chr13	52501598	52502022	+	0	NA	Intergenic	Intergenic	29026	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding
chipseq_peak_1256	chr10	9693913	9694559	+	0	NA	Intergenic	Intergenic	9514	NR_038036	620417	Mm.378085	NR_038036		Gm6150	-	predicted gene 6150	ncRNA
chipseq_peak_7879	chr2	70886504	70887378	+	0	NA	Intergenic	Intergenic	-61461	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding
chipseq_peak_11919	chr6	135863929	135864457	+	0	NA	intron (NM_008171, intron 5 of 14)	intron (NM_008171, intron 5 of 14)	205280	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA
chipseq_peak_11648	chr6	87257903	87258290	+	0	NA	intron (NM_054041, intron 9 of 17)	intron (NM_054041, intron 9 of 17)	77679	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding
chipseq_peak_4398	chr14	72847701	72848287	+	0	NA	Intergenic	Intergenic	-137991	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding
chipseq_peak_7345	chr2	3619673	3620064	+	0	NA	Intergenic	Intergenic	-93590	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding
chipseq_peak_1867	chr10	99774096	99774819	+	0	NA	Intergenic	Intergenic	-14799	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding
chipseq_peak_5754	chr16	51909445	51910467	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-121593	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
chipseq_peak_9535	chr4	14395063	14395847	+	0	NA	Intergenic	Intergenic	-104146	NR_131155	100040030	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA
chipseq_peak_168	chr1	31064744	31066053	+	0	NA	Intergenic	Intergenic	-111037	NM_153601	266744	Mm.389093	NM_153601	ENSMUSG00000050217	Lgsn	Gluld1|Lgs|lengsin	lengsin, lens protein with glutamine synthetase domain	protein-coding
chipseq_peak_6233	chr17	31928183	31928757	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-72678	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding
chipseq_peak_2850	chr12	36765389	36766531	+	0	NA	Intergenic	Intergenic	-50245	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA
chipseq_peak_1898	chr10	102758038	102758508	+	0	NA	Intergenic	Intergenic	246051	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding
chipseq_peak_11983	chr6	143974925	143975318	+	0	NA	intron (NM_001113559, intron 6 of 13)	intron (NM_001113559, intron 6 of 13)	234447	NM_011444	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
chipseq_peak_8522	chr3	23591847	23592964	+	0	NA	Intergenic	Intergenic	1341035	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA
chipseq_peak_6597	chr18	15390436	15391865	+	0	NA	3' UTR (NM_009700, exon 5 of 5)	3' UTR (NM_009700, exon 5 of 5)	11866	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding
chipseq_peak_3180	chr12	75107650	75107967	+	0	NA	intron (NM_172805, intron 6 of 10)	L1_Rod|LINE|L1	69524	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding
chipseq_peak_12430	chr7	110748460	110749115	+	0	NA	Intergenic	L1MB7|LINE|L1	-19419	NM_001276301	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding
chipseq_peak_358	chr1	55885529	55888948	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-44003	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
chipseq_peak_504	chr1	71682329	71682711	+	0	NA	Intergenic	Intergenic	29185	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA
chipseq_peak_4671	chr14	113468803	113469445	+	0	NA	Intergenic	Intergenic	-1362841	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_14029	chrX	69147931	69148945	+	0	NA	Intergenic	Intergenic	-211893	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding
chipseq_peak_6154	chr17	3962197	3962689	+	0	NA	Intergenic	Intergenic	120552	NR_045764	75815	Mm.183387	NR_045764		4930470H14Rik	-	RIKEN cDNA 4930470H14 gene	ncRNA
chipseq_peak_4320	chr14	59887396	59887875	+	0	NA	intron (NM_015803, intron 24 of 35)	intron (NM_015803, intron 24 of 35)	199199	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding
chipseq_peak_132	chr1	25698230	25699699	+	0	NA	intron (NM_175642, intron 2 of 30)	intron (NM_175642, intron 2 of 30)	130743	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
chipseq_peak_13475	chr9	41344956	41345792	+	0	NA	Intergenic	Intergenic	-31152	NR_131929	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA
chipseq_peak_9434	chr3	158356138	158356576	+	0	NA	intron (NM_001081358, intron 3 of 27)	intron (NM_001081358, intron 3 of 27)	205864	NM_001291452	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding
chipseq_peak_12510	chr7	126528255	126528777	+	0	NA	Intergenic	Intergenic	-25214	NM_183020	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding
chipseq_peak_6862	chr18	55069895	55070443	+	0	NA	Intergenic	Intergenic	-79989	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_11568	chr6	64246875	64247272	+	0	NA	intron (NM_008167, intron 8 of 15)	intron (NM_008167, intron 8 of 15)	-482073	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
chipseq_peak_643	chr1	98031589	98032185	+	0	NA	non-coding (NR_037993, exon 3 of 3)	non-coding (NR_037993, exon 3 of 3)	15906	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA
chipseq_peak_7606	chr2	43841494	43843014	+	0	NA	intron (NM_001301832, intron 3 of 14)	intron (NM_001301832, intron 3 of 14)	93430	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_9176	chr3	121869708	121870132	+	0	NA	Intergenic	MER21B|LTR|ERVL	-54705	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding
chipseq_peak_13897	chr9	112550331	112552167	+	0	NA	Intergenic	Intergenic	294675	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_179	chr1	32197242	32197564	+	0	NA	intron (NM_133235, intron 1 of 8)	intron (NM_133235, intron 1 of 8)	24597	NM_133235	170771	Mm.336594	NM_133235		Khdrbs2	6330586C16Rik|Slim1|Slm1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding
chipseq_peak_8753	chr3	55531483	55532178	+	0	NA	intron (NM_001111052, intron 13 of 13)	intron (NM_001111052, intron 13 of 13)	70072	NM_001111052	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
chipseq_peak_182	chr1	32397432	32398037	+	0	NA	intron (NM_133235, intron 3 of 8)	intron (NM_133235, intron 3 of 8)	123265	NM_001199956	408192	Mm.485769	NM_001199956		Gm9839	ENSMUSG00000049830|Senp15	predicted gene 9839	protein-coding
chipseq_peak_152	chr1	29019169	29019765	+	0	NA	Intergenic	L1MD|LINE|L1	-239215	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding
chipseq_peak_14035	chrX	70314995	70315316	+	0	NA	Intergenic	Intergenic	49930	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding
chipseq_peak_2534	chr11	101644956	101645748	+	0	NA	Intergenic	Intergenic	17403	NM_025654	66599	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding
chipseq_peak_9085	chr3	112878758	112879209	+	0	NA	Intergenic	Intergenic	277744	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding
chipseq_peak_2956	chr12	50066329	50067416	+	0	NA	Intergenic	Intergenic	582351	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_2342	chr11	47883537	47883916	+	0	NA	intron (NR_105801, intron 3 of 3)	intron (NR_105801, intron 3 of 3)	190857	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA
chipseq_peak_11229	chr6	17142699	17143596	+	0	NA	Intergenic	Intergenic	-54604	NR_102305	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA
chipseq_peak_3000	chr12	53833040	53833688	+	0	NA	intron (NM_013780, intron 5 of 11)	intron (NM_013780, intron 5 of 11)	370510	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding
chipseq_peak_7034	chr18	82283506	82283879	+	0	NA	Intergenic	Intergenic	123085	NM_008082	14427	Mm.6219	NM_008082	ENSMUSG00000024553	Galr1	Galnr1	galanin receptor 1	protein-coding
chipseq_peak_11857	chr6	112108345	112109080	+	0	NA	Intergenic	Intergenic	-101996	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA
chipseq_peak_5715	chr16	47627413	47628212	+	0	NA	Intergenic	Intergenic	-655923	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_3083	chr12	66888943	66889651	+	0	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	333252	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_13949	chr9	120478202	120478859	+	0	NA	Intergenic	Intergenic	-14076	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding
chipseq_peak_10240	chr5	4335781	4336056	+	0	NA	Intergenic	Intergenic	143551	NM_001042670	208595	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	ENSMUSG00000053178|Gm9897	mitochondrial transcription termination factor 1b	protein-coding
chipseq_peak_9664	chr4	29402014	29402667	+	0	NA	Intergenic	Intergenic	589195	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_6245	chr17	41511303	41512467	+	0	NA	Intergenic	B3|SINE|B2	577200	NM_008650	17850	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding
chipseq_peak_11937	chr6	137482876	137483172	+	0	NA	intron (NM_001271589, intron 12 of 13)	intron (NM_001271589, intron 12 of 13)	36871	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding
chipseq_peak_7863	chr2	67516504	67517320	+	0	NA	exon (NM_001083919, exon 7 of 9)	exon (NM_001083919, exon 7 of 9)	70910	NM_001024618	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding
chipseq_peak_2214	chr11	26122372	26122806	+	0	NA	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-79651	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
chipseq_peak_13006	chr8	76598235	76598848	+	0	NA	Intergenic	Intergenic	301632	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
chipseq_peak_5238	chr15	65835330	65836381	+	0	NA	intron (NM_133766, intron 6 of 22)	intron (NM_133766, intron 6 of 22)	48814	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
chipseq_peak_4396	chr14	70724550	70724987	+	0	NA	intron (NM_023045, intron 1 of 27)	intron (NM_023045, intron 1 of 27)	41860	NM_023045	65246	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|mKIAA0745	exportin 7	protein-coding
chipseq_peak_285	chr1	42255589	42260841	+	0	NA	Intergenic	Intergenic	436610	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
chipseq_peak_10254	chr5	5959708	5960135	+	0	NA	Intergenic	Intergenic	-210604	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding
chipseq_peak_3908	chr13	94375628	94377049	+	0	NA	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	17378	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding
chipseq_peak_7349	chr2	3910012	3910340	+	0	NA	Intergenic	Intergenic	196718	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding
chipseq_peak_4271	chr14	40381313	40381976	+	0	NA	Intergenic	Intergenic	511321	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding
chipseq_peak_7017	chr18	78377125	78378341	+	0	NA	intron (NM_207651, intron 2 of 21)	intron (NM_207651, intron 2 of 21)	-171293	NM_001110274	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
chipseq_peak_12158	chr7	58309866	58310418	+	0	NA	Intergenic	Intergenic	-348060	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding
chipseq_peak_4462	chr14	80249697	80250307	+	0	NA	Intergenic	Intergenic	249700	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_13133	chr8	101037677	101038088	+	0	NA	Intergenic	Intergenic	1621208	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_11847	chr6	110995307	110995976	+	0	NA	intron (NM_177328, intron 2 of 9)	intron (NM_177328, intron 2 of 9)	350043	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_4146	chr14	12580508	12580865	+	0	NA	intron (NM_012061, intron 6 of 28)	intron (NM_012061, intron 6 of 28)	-234821	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding
chipseq_peak_1755	chr10	87211980	87213181	+	0	NA	intron (NM_029685, intron 4 of 5)	intron (NM_029685, intron 4 of 5)	154534	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding
chipseq_peak_7264	chr19	45474474	45477592	+	0	NA	intron (NM_001286466, intron 4 of 13)	intron (NM_001286466, intron 4 of 13)	84510	NM_020032	56626	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding
chipseq_peak_5393	chr15	92583719	92584145	+	0	NA	intron (NM_001164593, intron 3 of 9)	intron (NM_001164593, intron 3 of 9)	-13177	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
chipseq_peak_12035	chr7	16933135	16933714	+	0	NA	Intergenic	Intergenic	-9392	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding
chipseq_peak_1728	chr10	78722625	78723729	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-4884	NM_009809	12365	Mm.20940	NM_009809	ENSMUSG00000005355	Casp14	MICE|mini-ICE	caspase 14	protein-coding
chipseq_peak_5029	chr15	42712566	42714940	+	0	NA	Intergenic	Intergenic	-36776	NM_009640	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
chipseq_peak_12500	chr7	122847125	122847810	+	0	NA	Intergenic	Intergenic	122992	NR_045614	73951	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA
chipseq_peak_6753	chr18	39303263	39303567	+	0	NA	intron (NM_175164, intron 19 of 22)	intron (NM_175164, intron 19 of 22)	183830	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding
chipseq_peak_7929	chr2	78723494	78724893	+	0	NA	Intergenic	Intergenic	-144854	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chipseq_peak_9333	chr3	145833898	145834540	+	0	NA	intron (NM_026993, intron 1 of 5)	intron (NM_026993, intron 1 of 5)	75527	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding
chipseq_peak_4630	chr14	106845216	106845655	+	0	NA	Intergenic	Intergenic	-358915	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
chipseq_peak_12787	chr8	42958019	42958774	+	0	NA	Intergenic	Intergenic	183090	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding
chipseq_peak_12139	chr7	55526067	55526473	+	0	NA	Intergenic	Intergenic	-241914	NM_001310740	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding
chipseq_peak_4591	chr14	101494525	101495059	+	0	NA	intron (NM_001081278, intron 4 of 18)	intron (NM_001081278, intron 4 of 18)	114399	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding
chipseq_peak_8760	chr3	56356022	56356583	+	0	NA	Intergenic	Intergenic	-172601	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
chipseq_peak_444	chr1	63763337	63764640	+	0	NA	intron (NM_001256158, intron 2 of 2)	intron (NM_001256158, intron 2 of 2)	5279	NM_001256158	74426	Mm.159197	NM_001256158	ENSMUSG00000025961	4933402D24Rik	-	RIKEN cDNA 4933402D24 gene	protein-coding
chipseq_peak_8260	chr2	141424645	141425541	+	0	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-753617	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_13172	chr8	107860042	107860880	+	0	NA	Intergenic	Intergenic	-271979	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding
chipseq_peak_8645	chr3	42408894	42409997	+	0	NA	Intergenic	Intergenic	666827	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
chipseq_peak_11518	chr6	54983521	54984028	+	0	NA	Intergenic	L1MD1|LINE|L1	9093	NM_026637	110175	Mm.294708	NM_026637		Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding
chipseq_peak_10464	chr5	45278586	45278932	+	0	NA	intron (NR_131933, intron 4 of 5)	intron (NR_131933, intron 4 of 5)	145641	NR_131933	52401	Mm.33854	NR_131933		D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA
chipseq_peak_7899	chr2	75224415	75224854	+	0	NA	Intergenic	Intergenic	219545	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA
chipseq_peak_3484	chr13	24048368	24049758	+	0	NA	intron (NM_001311122, intron 29 of 37)	intron (NM_001311122, intron 29 of 37)	-57849	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding
chipseq_peak_5750	chr16	51315527	51316499	+	0	NA	Intergenic	Intergenic	532604	NR_131005	78639	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA
chipseq_peak_9578	chr4	19725537	19726095	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-16812	NM_001276292	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
chipseq_peak_5272	chr15	67981894	67982377	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	276721	NM_198644	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
chipseq_peak_6386	chr17	68441292	68441692	+	0	NA	intron (NM_177278, intron 5 of 20)	intron (NM_177278, intron 5 of 20)	167695	NM_177278	320858	Mm.137356	NM_177278		L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding
chipseq_peak_11959	chr6	139966567	139967696	+	0	NA	intron (NM_207683, intron 23 of 23)	RLTR17B_Mm|LTR|ERVK	74286	NM_054066	114875	Mm.50808	NM_054066	ENSMUSG00000030230	Plcz1	1700041H07Rik|PLCzeta	phospholipase C, zeta 1	protein-coding
chipseq_peak_9657	chr4	28242196	28242704	+	0	NA	Intergenic	Intergenic	-570681	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_878	chr1	142263076	142265273	+	0	NA	Intergenic	Intergenic	-1376523	NM_020025	26878	Mm.285580	NM_020025		B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding
chipseq_peak_6556	chr17	94528688	94529168	+	0	NA	Intergenic	Lx9|LINE|L1	220964	NM_176917	76781	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding
chipseq_peak_10234	chr4	153928510	153930246	+	0	NA	Intergenic	ID4|SINE|ID	21098	NR_040670	407793	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA
chipseq_peak_13855	chr9	106038908	106040186	+	0	NA	intron (NM_026763, intron 19 of 37)	intron (NM_026763, intron 19 of 37)	57144	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding
chipseq_peak_95	chr1	22167492	22168437	+	0	NA	Intergenic	L3|LINE|CR1	-205314	NM_001310477	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding
chipseq_peak_5901	chr16	69469300	69470313	+	0	NA	Intergenic	Intergenic	330575	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA
chipseq_peak_12191	chr7	68858424	68859004	+	0	NA	Intergenic	RLTR9B|LTR|ERVK	-109476	NM_001042592	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding
chipseq_peak_6739	chr18	34220434	34220816	+	0	NA	promoter-TSS (NM_007462)	promoter-TSS (NM_007462)	-359	NM_007462	11789	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding
chipseq_peak_10588	chr5	63666905	63667162	+	0	NA	intron (NM_177006, intron 1 of 6)	intron (NM_177006, intron 1 of 6)	17930	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding
chipseq_peak_4272	chr14	40447741	40448259	+	0	NA	Intergenic	Intergenic	444965	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding
chipseq_peak_3097	chr12	67374410	67374910	+	0	NA	Intergenic	Intergenic	-152111	NM_001193266	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_369	chr1	55987322	55987866	+	0	NA	Intergenic	Intergenic	-31384	NR_126076	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_13815	chr9	101843717	101844200	+	0	NA	Intergenic	Intergenic	461017	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA
chipseq_peak_2085	chr10	125266107	125266792	+	0	NA	intron (NM_011391, intron 4 of 6)	intron (NM_011391, intron 4 of 6)	62086	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
chipseq_peak_10194	chr4	133836827	133837191	+	0	NA	Intergenic	B4|SINE|B4	37722	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding
chipseq_peak_13419	chr9	30161150	30162758	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-198825	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_9933	chr4	77870605	77871595	+	0	NA	intron (NM_011211, intron 2 of 39)	intron (NM_011211, intron 2 of 39)	340795	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_9801	chr4	52804123	52804837	+	0	NA	Intergenic	Intergenic	-10124	NR_040661	75367	Mm.159510	NR_040661	ENSMUSG00000070984	4930552N02Rik	-	RIKEN cDNA 4930552N02 gene	ncRNA
chipseq_peak_6991	chr18	70184723	70184988	+	0	NA	Intergenic	Intergenic	-43250	NM_001082553	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding
chipseq_peak_9658	chr4	28245806	28246049	+	0	NA	Intergenic	L1M5|LINE|L1	-567204	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_12152	chr7	57365568	57366318	+	0	NA	intron (NM_008074, intron 2 of 9)	intron (NM_008074, intron 2 of 9)	20928	NM_008074	14407	Mm.434343	NM_008074		Gabrg3	B230362M20Rik|Gabrg-3	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	protein-coding
chipseq_peak_5592	chr16	31766445	31767298	+	0	NA	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	12521	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding
chipseq_peak_3967	chr13	101695759	101696275	+	0	NA	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-3387	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding
chipseq_peak_5817	chr16	61381999	61382461	+	0	NA	Intergenic	Intergenic	-776699	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding
chipseq_peak_10656	chr5	72129162	72129712	+	0	NA	intron (NM_008069, intron 8 of 8)	intron (NM_008069, intron 8 of 8)	38746	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding
chipseq_peak_13255	chr8	127379222	127380077	+	0	NA	intron (NM_001309391, intron 11 of 24)	intron (NM_001309391, intron 11 of 24)	79997	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_12448	chr7	113347188	113348695	+	0	NA	intron (NM_133700, intron 4 of 10)	intron (NM_133700, intron 4 of 10)	21398	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding
chipseq_peak_3387	chr13	5642086	5642786	+	0	NA	Intergenic	Intergenic	215656	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
chipseq_peak_12766	chr8	40187580	40188049	+	0	NA	intron (NR_035426, intron 1 of 5)	intron (NR_035426, intron 1 of 5)	39973	NR_035426	100316806		NR_035426	ENSMUSG00000080653	Mir669e	Mirn669e|mmu-mir-669e	microRNA 669e	ncRNA
chipseq_peak_2981	chr12	51240612	51244082	+	0	NA	Intergenic	Intergenic	-105883	NM_001167964	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding
chipseq_peak_11908	chr6	127276269	127276816	+	0	NA	Intergenic	L1MD|LINE|L1	31425	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA
chipseq_peak_7733	chr2	56080327	56081215	+	0	NA	Intergenic	L1_Mus3|LINE|L1	644801	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
chipseq_peak_718	chr1	114010901	114011597	+	0	NA	Intergenic	Intergenic	-1673888	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_1879	chr10	100827641	100828296	+	0	NA	Intergenic	Intergenic	235582	NM_001081246	66605	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding
chipseq_peak_7433	chr2	8389146	8390860	+	0	NA	Intergenic	L1M5|LINE|L1	-799512	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_4833	chr15	16058800	16059121	+	0	NA	Intergenic	L1MDa|LINE|L1	-719141	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_494	chr1	70861536	70862208	+	0	NA	intron (NM_177164, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	136157	NM_001310658	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_13011	chr8	77085865	77086443	+	0	NA	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	183646	NM_001083906	110784	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding
chipseq_peak_6640	chr18	22202389	22202779	+	0	NA	Intergenic	Intergenic	-31188	NM_027616	70950	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding
chipseq_peak_5136	chr15	53324086	53324643	+	0	NA	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	21819	NM_010162	14042	Mm.309395	NM_010162		Ext1	AA409028	exostoses (multiple) 1	protein-coding
chipseq_peak_581	chr1	83859721	83860245	+	0	NA	Intergenic	L1ME4c|LINE|L1	358978	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA
chipseq_peak_4338	chr14	62455001	62455805	+	0	NA	intron (NM_172810, intron 1 of 16)	intron (NM_172810, intron 1 of 16)	886	NM_172810	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding
chipseq_peak_10765	chr5	85608948	85609445	+	0	NA	Intergenic	Intergenic	456387	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_5116	chr15	51665952	51666260	+	0	NA	Intergenic	AmnSINE1|SINE|Deu	199355	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
chipseq_peak_7295	chr19	51292876	51293482	+	0	NA	Intergenic	Intergenic	-614533	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_10949	chr5	117939309	117939934	+	0	NA	intron (NM_008712, intron 21 of 27)	intron (NM_008712, intron 21 of 27)	-37149	NM_145564	231670	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673|mKIAA0875	F-box protein 21	protein-coding
chipseq_peak_6194	chr17	11858553	11859568	+	0	NA	intron (NM_016694, intron 9 of 11)	intron (NM_016694, intron 9 of 11)	24129	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA
chipseq_peak_3802	chr13	83535359	83538268	+	0	NA	intron (NM_001170537, intron 2 of 10)	intron (NM_001170537, intron 2 of 10)	32779	NM_001170537	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_9961	chr4	80636165	80636590	+	0	NA	Intergenic	Intergenic	-197836	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_9317	chr3	143288755	143289213	+	0	NA	Intergenic	Intergenic	45929	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA
chipseq_peak_12276	chr7	83252046	83252496	+	0	NA	Intergenic	Intergenic	-280880	NR_045855	71285	Mm.76818	NR_045855		4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA
chipseq_peak_9121	chr3	117624937	117625562	+	0	NA	intron (NM_029425, intron 2 of 5)	intron (NM_029425, intron 2 of 5)	50022	NM_029425	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding
chipseq_peak_5105	chr15	50674388	50674918	+	0	NA	intron (NM_001310481, intron 4 of 5)	(TG)n|Simple_repeat|Simple_repeat	214396	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_9358	chr3	149445183	149446009	+	0	NA	Intergenic	Intergenic	170859	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_10175	chr4	127564126	127564573	+	0	NA	Intergenic	MER44A|DNA|TcMar-Tigger	-206185	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding
chipseq_peak_7706	chr2	52747269	52748102	+	0	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-5536	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding
chipseq_peak_345	chr1	54076593	54077094	+	0	NA	intron (NM_001001883, intron 1 of 28)	intron (NM_001001883, intron 1 of 28)	118191	NM_172655	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
chipseq_peak_5897	chr16	68666276	68667745	+	0	NA	Intergenic	Intergenic	-1046102	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_4747	chr14	121074225	121074572	+	0	NA	intron (NM_134082, intron 1 of 26)	intron (NM_134082, intron 1 of 26)	38824	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding
chipseq_peak_8360	chr2	161783928	161784139	+	0	NA	intron (NM_001291150, intron 11 of 30)	intron (NM_001291150, intron 11 of 30)	-606780	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA
chipseq_peak_3149	chr12	73624573	73625293	+	0	NA	intron (NM_001313977, intron 2 of 14)	Lx9|LINE|L1	40137	NM_001313977	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding
chipseq_peak_11093	chr5	143942899	143943933	+	0	NA	Intergenic	Intergenic	33415	NM_008886	18861	Mm.2950	NM_008886		Pms2	AW555130|Pmsl2	postmeiotic segregation increased 2 (S. cerevisiae)	protein-coding
chipseq_peak_13921	chr9	113358524	113359125	+	0	NA	Intergenic	Intergenic	228328	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_8671	chr3	48482746	48483160	+	0	NA	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	126147	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo
chipseq_peak_11845	chr6	110980779	110981115	+	0	NA	intron (NM_177328, intron 2 of 9)	intron (NM_177328, intron 2 of 9)	335349	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_12392	chr7	96720514	96720855	+	0	NA	intron (NM_001310760, intron 8 of 32)	MIR|SINE|MIR	80865	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA
chipseq_peak_4512	chr14	88700121	88700487	+	0	NA	Intergenic	Intergenic	-228908	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_12557	chr7	134730240	134730969	+	0	NA	intron (NM_001033420, intron 3 of 51)	intron (NM_001033420, intron 3 of 51)	59917	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding
chipseq_peak_3013	chr12	57927115	57927624	+	0	NA	Intergenic	Intergenic	-264458	NR_131112	217601	Mm.488987	NR_131112		BC042761	-	cDNA sequence BC042761	ncRNA
chipseq_peak_12595	chr8	7457567	7458008	+	0	NA	Intergenic	Lx|LINE|L1	1202986	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_5825	chr16	62650671	62651312	+	0	NA	Intergenic	Intergenic	135725	NM_178925	106338	Mm.26321	NM_178925		Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding
chipseq_peak_6540	chr17	91583171	91583701	+	0	NA	Intergenic	Intergenic	-490634	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
chipseq_peak_5266	chr15	67058231	67058564	+	0	NA	Intergenic	Intergenic	-88756	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding
chipseq_peak_11052	chr5	133864765	133865103	+	0	NA	Intergenic	Intergenic	-234814	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
chipseq_peak_283	chr1	42242618	42243652	+	0	NA	Intergenic	Intergenic	451690	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
chipseq_peak_8971	chr3	82341037	82341825	+	0	NA	Intergenic	Intergenic	-16641	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding
chipseq_peak_4142	chr14	12300717	12301063	+	0	NA	intron (NM_146051, intron 5 of 5)	intron (NM_146051, intron 5 of 5)	16687	NM_178141	218734	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding
chipseq_peak_8355	chr2	161044404	161045575	+	0	NA	intron (NM_173368, intron 3 of 36)	intron (NM_173368, intron 3 of 36)	64097	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
chipseq_peak_2987	chr12	52286801	52287102	+	0	NA	intron (NM_029760, intron 8 of 10)	L4_A_Mam|LINE|RTE-X	189205	NM_029760	76826	Mm.244781	NM_029760		Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding
chipseq_peak_8879	chr3	75076588	75077070	+	0	NA	intron (NM_001310529, intron 12 of 16)	intron (NM_001310529, intron 12 of 16)	66943	NM_172515	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding
chipseq_peak_8861	chr3	70488541	70489092	+	0	NA	Intergenic	Intergenic	318475	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
chipseq_peak_9401	chr3	153536151	153536661	+	0	NA	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	188727	NM_011372	20447	Mm.296453	NM_011372		St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
chipseq_peak_2756	chr12	26532995	26533554	+	0	NA	Intergenic	Intergenic	64059	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
chipseq_peak_868	chr1	141782399	141784010	+	0	NA	Intergenic	Intergenic	-1126802	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_9072	chr3	108882969	108883320	+	0	NA	intron (NM_177091, intron 3 of 12)	intron (NM_177091, intron 3 of 12)	6864	NM_177091	320181	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding
chipseq_peak_9948	chr4	79236912	79237248	+	0	NA	Intergenic	L1_Mur3|LINE|L1	643033	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_7675	chr2	48423793	48424612	+	0	NA	Intergenic	Intergenic	-389907	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_13169	chr8	107451501	107452232	+	0	NA	intron (NM_025830, intron 1 of 23)	Charlie1a|DNA|hAT-Charlie	15468	NM_025830	66894	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
chipseq_peak_12259	chr7	78156312	78156547	+	0	NA	Intergenic	Intergenic	421409	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
chipseq_peak_1988	chr10	111099759	111100344	+	0	NA	Intergenic	Intergenic	-64751	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding
chipseq_peak_12684	chr8	23314383	23315023	+	0	NA	Intergenic	Intergenic	-57623	NM_020585	57437	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding
chipseq_peak_5536	chr16	23758173	23758834	+	0	NA	Intergenic	Intergenic	132341	NM_009215	20604	Mm.2453	NM_009215	ENSMUSG00000004366	Sst	SOM|SRIF|SS|Smst	somatostatin	protein-coding
chipseq_peak_3143	chr12	71974860	71975225	+	0	NA	intron (NM_001286452, intron 17 of 24)	intron (NM_001286452, intron 17 of 24)	85499	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding
chipseq_peak_11902	chr6	122308576	122308995	+	0	NA	promoter-TSS (NM_010749)	promoter-TSS (NM_010749)	-225	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding
chipseq_peak_11524	chr6	55680904	55681438	+	0	NA	promoter-TSS (NM_009717)	promoter-TSS (NM_009717)	92	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding
chipseq_peak_3115	chr12	70036681	70037385	+	0	NA	intron (NM_001286080, intron 21 of 29)	L1MC4a|LINE|L1	-50031	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador homolog 1 (Drosophila)	protein-coding
chipseq_peak_6901	chr18	59039847	59040680	+	0	NA	intron (NM_175506, intron 21 of 22)	intron (NM_175506, intron 21 of 22)	-22118	NR_033764	225583	Mm.209711	NM_173759	ENSMUSG00000050875	A730017C20Rik	-	RIKEN cDNA A730017C20 gene	protein-coding
chipseq_peak_13813	chr9	101580678	101581258	+	0	NA	Intergenic	Intergenic	238774	NR_110509	102633035	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA
chipseq_peak_1494	chr10	41003806	41004614	+	0	NA	Intergenic	B3A|SINE|B2	67374	NM_199058	140741	Mm.290693	NM_199058	ENSMUSG00000046922	Gpr6	AI852874|Gm233	G protein-coupled receptor 6	protein-coding
chipseq_peak_10965	chr5	121967611	121969576	+	0	NA	intron (NM_001312908, intron 2 of 22)	intron (NM_001312908, intron 2 of 22)	79232	NM_007804	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding
chipseq_peak_8332	chr2	156665653	156666838	+	0	NA	intron (NM_001277187, intron 2 of 11)	intron (NM_001277187, intron 2 of 11)	52548	NM_146128	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding
chipseq_peak_10853	chr5	102623687	102624300	+	0	NA	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	142602	NM_146161	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
chipseq_peak_1204	chr1	193586863	193587636	+	0	NA	Intergenic	Intergenic	-79719	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA
chipseq_peak_5178	chr15	59480545	59480962	+	0	NA	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	106555	NM_026746	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	non-SMC element 2 homolog (MMS21, S. cerevisiae)	protein-coding
chipseq_peak_3464	chr13	19884100	19884700	+	0	NA	Intergenic	Intergenic	-60143	NM_181754	353346	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding
chipseq_peak_12973	chr8	67438062	67438862	+	0	NA	Intergenic	Intergenic	-52296	NM_008673	17960	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding
chipseq_peak_7029	chr18	79186815	79187114	+	0	NA	Intergenic	Intergenic	-77573	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
chipseq_peak_5161	chr15	57608577	57608949	+	0	NA	Intergenic	Intergenic	-85904	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding
chipseq_peak_6517	chr17	90085960	90089711	+	0	NA	intron (NM_020252, intron 21 of 22)	intron (NM_020252, intron 21 of 22)	708594	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
chipseq_peak_5292	chr15	70331031	70331625	+	0	NA	Intergenic	Intergenic	407095	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_2062	chr10	123489806	123490401	+	0	NA	intron (NM_182807, intron 2 of 5)	intron (NM_182807, intron 2 of 5)	226027	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_9010	chr3	87246831	87247673	+	0	NA	Intergenic	Intergenic	16272	NM_030707	80891	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding
chipseq_peak_1449	chr10	34967950	34968358	+	0	NA	Intergenic	L1M5|LINE|L1	484754	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding
chipseq_peak_13372	chr9	27091212	27091798	+	0	NA	intron (NM_178113, intron 33 of 35)	intron (NM_178113, intron 33 of 35)	61330	NM_178113	78658	Mm.251777	NM_178113	ENSMUSG00000035024	Ncapd3	2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056	non-SMC condensin II complex, subunit D3	protein-coding
chipseq_peak_10426	chr5	40666963	40667289	+	0	NA	Intergenic	Intergenic	-1022495	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_8876	chr3	73741945	73742536	+	0	NA	Intergenic	Intergenic	-33825	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding
chipseq_peak_4172	chr14	17900535	17900865	+	0	NA	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-80944	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding
chipseq_peak_10478	chr5	48509048	48509628	+	0	NA	intron (NM_001199244, intron 1 of 7)	intron (NM_001199244, intron 1 of 7)	423	NM_001199242	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
chipseq_peak_11431	chr6	43297176	43297928	+	0	NA	Intergenic	Intergenic	12002	NM_130869	18291	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding
chipseq_peak_2146	chr11	14300905	14301575	+	0	NA	Intergenic	Intergenic	-122199	NR_131011	75280	Mm.108492	NR_131011		4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA
chipseq_peak_8100	chr2	113645233	113645902	+	0	NA	intron (NM_001285458, intron 13 of 16)	intron (NM_001285458, intron 13 of 16)	-39523	NM_001287817	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|ld	formin 1	protein-coding
chipseq_peak_6452	chr17	80021911	80022157	+	0	NA	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	40234	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
chipseq_peak_12586	chr8	6657496	6658155	+	0	NA	Intergenic	Intergenic	-1552593	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_8020	chr2	99285168	99285493	+	0	NA	Intergenic	Intergenic	1817673	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_11627	chr6	80865809	80866379	+	0	NA	Intergenic	Intergenic	846451	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding
chipseq_peak_6048	chr16	78258857	78259508	+	0	NA	Intergenic	Intergenic	-3728	NR_045698	100503619	Mm.387531	NR_045698		E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA
chipseq_peak_12526	chr7	129354432	129354720	+	0	NA	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	97482	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding
chipseq_peak_4240	chr14	33513761	33514248	+	0	NA	Intergenic	Intergenic	-66846	NM_001310453	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding
chipseq_peak_5811	chr16	60097350	60098506	+	0	NA	intron (NM_007938, intron 5 of 17)	intron (NM_007938, intron 5 of 17)	-458589	NM_019665	56297	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding
chipseq_peak_882	chr1	143090030	143090421	+	0	NA	Intergenic	Intergenic	-550472	NM_020025	26878	Mm.285580	NM_020025		B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding
chipseq_peak_13432	chr9	33090055	33090729	+	0	NA	Intergenic	Intergenic	-161426	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA
chipseq_peak_13779	chr9	96281565	96281857	+	0	NA	intron (NM_178667, intron 5 of 13)	intron (NM_178667, intron 5 of 13)	22463	NM_001184710	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding
chipseq_peak_13337	chr9	18229854	18230264	+	0	NA	Intergenic	Intergenic	-62208	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding
chipseq_peak_8187	chr2	133274403	133274898	+	0	NA	Intergenic	Intergenic	-277509	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding
chipseq_peak_1624	chr10	64250068	64250721	+	0	NA	intron (NM_001164376, intron 7 of 17)	intron (NM_001164376, intron 7 of 17)	-160139	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_5676	chr16	42591389	42592080	+	0	NA	Intergenic	MER57C2|LTR|ERV1	-251083	NM_008083	14432	Mm.1222	NM_008083	ENSMUSG00000047261	Gap43	B-50|Basp2|GAP-43	growth associated protein 43	protein-coding
chipseq_peak_7253	chr19	43438806	43440162	+	0	NA	promoter-TSS (NM_031396)	promoter-TSS (NM_031396)	-952	NM_031396	83674	Mm.329864	NM_031396	ENSMUSG00000025189	Cnnm1	AI846314|Acdp1|CLP-1	cyclin M1	protein-coding
chipseq_peak_10735	chr5	82988901	82989663	+	0	NA	Intergenic	Intergenic	-190217	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
chipseq_peak_4636	chr14	108247422	108248023	+	0	NA	Intergenic	Intergenic	666517	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_1678	chr10	69154758	69157173	+	0	NA	Intergenic	Intergenic	-52587	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding
chipseq_peak_435	chr1	61882503	61882805	+	0	NA	intron (NM_001081050, intron 2 of 22)	intron (NM_001081050, intron 2 of 22)	243830	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
chipseq_peak_1031	chr1	169060332	169061578	+	0	NA	Intergenic	Intergenic	470509	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
chipseq_peak_514	chr1	72254048	72256017	+	0	NA	Intergenic	U2|snRNA|snRNA	29282	NM_023523	111175	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding
chipseq_peak_293	chr1	43545735	43546297	+	0	NA	intron (NM_010879, intron 3 of 4)	intron (NM_010879, intron 3 of 4)	100265	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding
chipseq_peak_4984	chr15	34669457	34669775	+	0	NA	intron (NM_145469, intron 1 of 10)	L1MA7|LINE|L1	-5457	NR_045883	71637	Mm.410827	NR_045883		4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA
chipseq_peak_10372	chr5	25472104	25472539	+	0	NA	intron (NM_001081383, intron 1 of 58)	intron (NM_001081383, intron 1 of 58)	26462	NM_001081383	231051	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding
chipseq_peak_8738	chr3	54676937	54677279	+	0	NA	Intergenic	Intergenic	-15997	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding
chipseq_peak_10954	chr5	118605299	118605864	+	0	NA	intron (NM_172424, intron 2 of 30)	intron (NM_172424, intron 2 of 30)	44862	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding
chipseq_peak_5756	chr16	51937299	51937869	+	0	NA	Intergenic	Intergenic	-93965	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
chipseq_peak_11388	chr6	37142948	37143908	+	0	NA	intron (NM_001081206, intron 2 of 33)	intron (NM_001081206, intron 2 of 33)	156548	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding
chipseq_peak_640	chr1	97863100	97864337	+	0	NA	intron (NM_013626, intron 15 of 25)	intron (NM_013626, intron 15 of 25)	93546	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding
chipseq_peak_4022	chr13	108153026	108153498	+	0	NA	intron (NM_001127346, intron 1 of 3)	intron (NM_001127346, intron 1 of 3)	5363	NM_001127346	75597	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding
chipseq_peak_9132	chr3	117868928	117870426	+	0	NA	promoter-TSS (NM_029655)	promoter-TSS (NM_029655)	-741	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_12812	chr8	45714988	45716280	+	0	NA	intron (NM_001310708, intron 1 of 19)	intron (NM_001310708, intron 1 of 19)	53641	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777	sorbin and SH3 domain containing 2	protein-coding
chipseq_peak_3525	chr13	30997441	30998161	+	0	NA	Intergenic	Intergenic	-23754	NM_025588	66482	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding
chipseq_peak_6578	chr18	11905537	11906008	+	0	NA	intron (NM_022021, intron 3 of 8)	intron (NM_022021, intron 3 of 8)	-65334	NR_035447	100316686		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA
chipseq_peak_4779	chr15	8663746	8664617	+	0	NA	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	46626	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
chipseq_peak_6180	chr17	10269750	10270136	+	0	NA	intron (NM_001159516, intron 3 of 6)	intron (NM_001159516, intron 3 of 6)	49418	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding
chipseq_peak_12282	chr7	86972052	86972759	+	0	NA	Intergenic	Intergenic	-24060	NM_001105190	621430	Mm.469903	NM_001105190	ENSMUSG00000090362	Vmn2r79	EG621430	vomeronasal 2, receptor 79	protein-coding
chipseq_peak_10946	chr5	117504522	117504931	+	0	NA	intron (NM_001312914, intron 2 of 19)	intron (NM_001312914, intron 2 of 19)	90724	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding
chipseq_peak_11348	chr6	33507401	33507738	+	0	NA	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	258419	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
chipseq_peak_8309	chr2	145724289	145724782	+	0	NA	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	23340	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA
chipseq_peak_6469	chr17	82731508	82732557	+	0	NA	Intergenic	Intergenic	346193	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
chipseq_peak_2971	chr12	50973974	50974749	+	0	NA	Intergenic	Intergenic	-30795	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
chipseq_peak_9740	chr4	38572426	38572975	+	0	NA	Intergenic	Intergenic	-877593	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
chipseq_peak_2415	chr11	71976507	71976748	+	0	NA	Intergenic	Intergenic	-36505	NR_045942	73816	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA
chipseq_peak_4326	chr14	60454433	60455872	+	0	NA	Intergenic	Intergenic	76866	NM_028113	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding
chipseq_peak_1870	chr10	100018649	100019808	+	0	NA	intron (NM_013598, intron 1 of 9)	intron (NM_013598, intron 1 of 9)	3404	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding
chipseq_peak_6503	chr17	88652058	88653304	+	0	NA	Intergenic	Intergenic	-15979	NM_023630	71828	Mm.61330	NM_023630	ENSMUSG00000024154	Gtf2a1l	1700011N16Rik|Alf|Gtf2a1lf	general transcription factor IIA, 1-like	protein-coding
chipseq_peak_4309	chr14	55205076	55205539	+	0	NA	Intergenic	Lx7|LINE|L1	-16700	NM_027790	71412	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding
chipseq_peak_11110	chr5	148453772	148454183	+	0	NA	Intergenic	Intergenic	-54073	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding
chipseq_peak_12503	chr7	124131208	124131898	+	0	NA	intron (NM_001252072, intron 1 of 1)	intron (NM_001252072, intron 1 of 1)	148372	NM_001252072	628779	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding
chipseq_peak_6890	chr18	57704148	57704813	+	0	NA	intron (NM_029290, intron 6 of 6)	intron (NM_029290, intron 6 of 6)	-65895	NR_045360	70157	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA
chipseq_peak_1688	chr10	69764429	69764934	+	0	NA	intron (NM_170730, intron 1 of 17)	intron (NM_170730, intron 1 of 17)	-160851	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_4439	chr14	77744821	77745242	+	0	NA	Intergenic	Intergenic	53937	NM_001033440	380920	Mm.297771	NM_001033440		Gm1587	-	predicted gene 1587	protein-coding
chipseq_peak_4313	chr14	56628407	56628682	+	0	NA	intron (NM_001145978, intron 25 of 34)	intron (NM_001145978, intron 25 of 34)	-39704	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding
chipseq_peak_2242	chr11	34086396	34086681	+	0	NA	intron (NM_010696, intron 17 of 20)	intron (NM_010696, intron 17 of 20)	39337	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|twm	lymphocyte cytosolic protein 2	protein-coding
chipseq_peak_4362	chr14	64511686	64513332	+	0	NA	Intergenic	Intergenic	-56606	NM_026322	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_3014	chr12	57949817	57950161	+	0	NA	Intergenic	Intergenic	-261815	NM_009216	20605	Mm.278336	NM_009216		Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding
chipseq_peak_11042	chr5	132489771	132490741	+	0	NA	intron (NM_177047, intron 1 of 18)	intron (NM_177047, intron 1 of 18)	52087	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
chipseq_peak_4473	chr14	81622119	81622451	+	0	NA	Intergenic	Lx7|LINE|L1	1621983	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_6161	chr17	4662792	4663242	+	0	NA	Intergenic	Intergenic	28037	NR_130984	75117	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA
chipseq_peak_13632	chr9	61676811	61677404	+	0	NA	Intergenic	Intergenic	237403	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding
chipseq_peak_4947	chr15	29226856	29227320	+	0	NA	Intergenic	Lx8b|LINE|L1	-945505	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding
chipseq_peak_1212	chr1	194041090	194041599	+	0	NA	Intergenic	Intergenic	181415	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_6905	chr18	59486057	59486902	+	0	NA	Intergenic	Intergenic	-93151	NR_105773	102465182		NR_105773	ENSMUSG00000098287	Mir6355	Gm27473|mmu-mir-6355	microRNA 6355	ncRNA
chipseq_peak_13288	chr9	7690618	7691012	+	0	NA	intron (NR_126562, intron 1 of 3)	L1MC1|LINE|L1	-1296	NM_010810	17393	Mm.4825	NM_010810	ENSMUSG00000018623	Mmp7	MAT	matrix metallopeptidase 7	protein-coding
chipseq_peak_8724	chr3	53834040	53834933	+	0	NA	Intergenic	Intergenic	29321	NM_026435	67890	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|ENSMUSG00000074598|Gm10726	ubiquitin-fold modifier 1	protein-coding
chipseq_peak_2908	chr12	43910702	43911099	+	0	NA	Intergenic	Intergenic	299168	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
chipseq_peak_12639	chr8	11114588	11115623	+	0	NA	Intergenic	Intergenic	-106675	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding
chipseq_peak_6765	chr18	40492934	40493562	+	0	NA	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	234887	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding
chipseq_peak_12774	chr8	40970243	40970593	+	0	NA	intron (NM_026840, intron 2 of 5)	intron (NM_026840, intron 2 of 5)	44185	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding
chipseq_peak_9537	chr4	14442804	14443099	+	0	NA	Intergenic	Intergenic	-151642	NR_131155	100040030	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA
chipseq_peak_7207	chr19	29978968	29979828	+	0	NA	Intergenic	Intergenic	-24392	NM_025741	66745	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding
chipseq_peak_13294	chr9	9696390	9697020	+	0	NA	intron (NM_001170787, intron 20 of 24)	intron (NM_001170787, intron 20 of 24)	-197726	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_13928	chr9	113626822	113627357	+	0	NA	Intergenic	Intergenic	-39937	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_968	chr1	159664124	159665121	+	0	NA	intron (NM_022312, intron 1 of 22)	intron (NM_022312, intron 1 of 22)	140853	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding
chipseq_peak_12039	chr7	24299572	24299923	+	0	NA	promoter-TSS (NM_009561)	promoter-TSS (NM_009561)	-198	NM_009561	22719	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding
chipseq_peak_9559	chr4	16852538	16853384	+	0	NA	Intergenic	Intergenic	688851	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA
chipseq_peak_11875	chr6	115913466	115915829	+	0	NA	intron (NM_001167763, intron 20 of 28)	MIRb|SINE|MIR	-17280	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding
chipseq_peak_5366	chr15	87101162	87101492	+	0	NA	Intergenic	L1MEg|LINE|L1	-442972	NM_001252310	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding
chipseq_peak_3324	chr12	100689365	100689669	+	0	NA	intron (NM_153587, intron 1 of 17)	(TTAA)n|Simple_repeat|Simple_repeat	35511	NM_153587	73086	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK	ribosomal protein S6 kinase, polypeptide 5	protein-coding
chipseq_peak_1904	chr10	104482201	104482901	+	0	NA	Intergenic	Intergenic	195282	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA
chipseq_peak_12588	chr8	6817279	6817955	+	0	NA	Intergenic	Intergenic	-1712385	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_10615	chr5	67562804	67563309	+	0	NA	Intergenic	Intergenic	-44827	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding
chipseq_peak_3476	chr13	22049709	22050408	+	0	NA	Intergenic	Intergenic	6828	NM_178198	319183	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding
chipseq_peak_2724	chr12	15416212	15416763	+	0	NA	Intergenic	Intergenic	-366098	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
chipseq_peak_2656	chr12	6936515	6937274	+	0	NA	Intergenic	Intergenic	443436	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_11237	chr6	17665330	17666637	+	0	NA	3' UTR (NM_007604, exon 10 of 10)	3' UTR (NM_007604, exon 10 of 10)	-28011	NM_001289626	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
chipseq_peak_8910	chr3	79144240	79146286	+	0	NA	promoter-TSS (NM_001310536)	promoter-TSS (NM_001310536)	-376	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_9777	chr4	48715971	48716728	+	0	NA	Intergenic	Intergenic	52835	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding
chipseq_peak_887	chr1	143912619	143912935	+	0	NA	Intergenic	Intergenic	91372	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding
chipseq_peak_2945	chr12	49830690	49831216	+	0	NA	Intergenic	Intergenic	-350091	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_2321	chr11	42611325	42612103	+	0	NA	intron (NM_008070, intron 9 of 9)	MIRc|SINE|MIR	191957	NM_008070	14401	Mm.338723	NM_008070		Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding
chipseq_peak_3353	chr12	116812910	116813430	+	0	NA	intron (NM_011215, intron 3 of 22)	L1MD1|LINE|L1	327450	NM_011215	19276	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding
chipseq_peak_8825	chr3	67230999	67234052	+	0	NA	intron (NM_025822, intron 6 of 9)	intron (NM_025822, intron 6 of 9)	-141572	NM_010801	17349	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding
chipseq_peak_5190	chr15	60809313	60809934	+	0	NA	Intergenic	L1MB5|LINE|L1	-13342	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA
chipseq_peak_8642	chr3	41908871	41909295	+	0	NA	Intergenic	Tigger11a|DNA|TcMar-Tigger	166465	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
chipseq_peak_3480	chr13	23574199	23576406	+	0	NA	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	-461	NM_178204	319149	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding
chipseq_peak_7611	chr2	43926878	43927653	+	0	NA	intron (NM_001301832, intron 7 of 14)	intron (NM_001301832, intron 7 of 14)	138059	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_12100	chr7	51032854	51033140	+	0	NA	Intergenic	Intergenic	433807	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding
chipseq_peak_3212	chr12	80818777	80819371	+	0	NA	intron (NM_178682, intron 1 of 5)	intron (NM_178682, intron 1 of 5)	28542	NM_178682	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding
chipseq_peak_4685	chr14	114773770	114775274	+	0	NA	Intergenic	Intergenic	-57443	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_253	chr1	41026935	41028763	+	0	NA	Intergenic	Intergenic	153403	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_4760	chr14	123989972	123992083	+	0	NA	intron (NR_045479, intron 1 of 3)	RMER5|LTR|ERV1	3392	NR_045479	69393	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA
chipseq_peak_941	chr1	154497835	154499114	+	0	NA	intron (NM_009782, intron 7 of 46)	intron (NM_009782, intron 7 of 46)	227446	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
chipseq_peak_11210	chr6	14140664	14143484	+	0	NA	Intergenic	Intergenic	270505	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
chipseq_peak_4666	chr14	112229948	112231226	+	0	NA	Intergenic	Lx10|LINE|L1	209157	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
chipseq_peak_12733	chr8	35499056	35499348	+	0	NA	Intergenic	Intergenic	-3669	NM_026067	67276	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding
chipseq_peak_1786	chr10	91433395	91433806	+	0	NA	Intergenic	Intergenic	-261981	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
chipseq_peak_13329	chr9	16584608	16584915	+	0	NA	Intergenic	Intergenic	-206530	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT tumor suppressor homolog 3 (Drosophila)	protein-coding
chipseq_peak_89	chr1	21798328	21799205	+	0	NA	intron (NM_001310477, intron 1 of 12)	intron (NM_001310477, intron 1 of 12)	163176	NM_023872	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding
chipseq_peak_11248	chr6	18648448	18650140	+	0	NA	Intergenic	Intergenic	-134469	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_3401	chr13	6304621	6305039	+	0	NA	Intergenic	Intergenic	-243327	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding
chipseq_peak_10582	chr5	63430359	63431262	+	0	NA	Intergenic	Intergenic	-218293	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding
chipseq_peak_9296	chr3	141032566	141033325	+	0	NA	Intergenic	Intergenic	179410	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding
chipseq_peak_2904	chr12	43575883	43576266	+	0	NA	Intergenic	Intergenic	633994	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
chipseq_peak_3699	chr13	70771069	70771547	+	0	NA	intron (NM_172053, intron 13 of 22)	intron (NM_172053, intron 13 of 22)	70502	NM_172053	271127	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding
chipseq_peak_8483	chr3	18049654	18049967	+	0	NA	Intergenic	Intergenic	-4515	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding
chipseq_peak_716	chr1	113394994	113395794	+	0	NA	Intergenic	Intergenic	-1530476	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
chipseq_peak_420	chr1	58196877	58197305	+	0	NA	intron (NM_023617, intron 34 of 34)	intron (NM_023617, intron 34 of 34)	-13306	NM_023631	71872	Mm.244525	NM_023631	ENSMUSG00000038242	Aox4	2310003G12Rik|Aoh2	aldehyde oxidase 4	protein-coding
chipseq_peak_12964	chr8	66203816	66204432	+	0	NA	intron (NM_001293784, intron 4 of 8)	intron (NM_001293784, intron 4 of 8)	-182177	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
chipseq_peak_14016	chrX	63756912	63757387	+	0	NA	Intergenic	Intergenic	395049	NM_001177377	627470	Mm.233605	NM_001177377	ENSMUSG00000079579	Gm6760	EG627470	predicted gene 6760	protein-coding
chipseq_peak_518	chr1	72463152	72463493	+	0	NA	intron (NM_001045533, intron 1 of 3)	intron (NM_001045533, intron 1 of 3)	73242	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding
chipseq_peak_12128	chr7	54748665	54749694	+	0	NA	Intergenic	Intergenic	-86066	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_13063	chr8	88118373	88118650	+	0	NA	promoter-TSS (NM_029074)	promoter-TSS (NM_029074)	-248	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding
chipseq_peak_5722	chr16	47851178	47852286	+	0	NA	Intergenic	Intergenic	-432003	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_6436	chr17	76124508	76125946	+	0	NA	Intergenic	Intergenic	264204	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
chipseq_peak_9785	chr4	50241985	50242408	+	0	NA	Intergenic	L1M5|LINE|L1	-396427	NM_001033351	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding
chipseq_peak_11391	chr6	37224834	37226687	+	0	NA	intron (NM_001081206, intron 1 of 33)	intron (NM_001081206, intron 1 of 33)	74216	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding
chipseq_peak_9937	chr4	78145428	78146368	+	0	NA	intron (NM_011211, intron 1 of 39)	MLT1A0|LTR|ERVL-MaLR	65997	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_10868	chr5	106276186	106276602	+	0	NA	Intergenic	Intergenic	181772	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding
chipseq_peak_7407	chr2	7569121	7570005	+	0	NA	Intergenic	Lx6|LINE|L1	-173365	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_87	chr1	21639848	21640592	+	0	NA	intron (NM_001310477, intron 1 of 12)	intron (NM_001310477, intron 1 of 12)	256664	NM_001113187	98582	Mm.326336	NM_001113187	ENSMUSG00000085079	Khdc1b	AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c	KH domain containing 1B	protein-coding
chipseq_peak_10159	chr4	124226997	124228608	+	0	NA	Intergenic	Intergenic	258157	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA
chipseq_peak_7933	chr2	78962036	78962975	+	0	NA	Intergenic	Intergenic	93458	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
chipseq_peak_854	chr1	140397734	140398037	+	0	NA	intron (NM_001081027, intron 8 of 27)	intron (NM_001081027, intron 8 of 27)	151628	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding
chipseq_peak_1139	chr1	180517296	180517703	+	0	NA	Intergenic	Intergenic	-33995	NM_001081227	381310	Mm.44791	NM_001081227	ENSMUSG00000053963	6330403A02Rik	ENSMUSG00000056615|Gm10001|R75555	RIKEN cDNA 6330403A02 gene	protein-coding
chipseq_peak_8528	chr3	24697476	24697756	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	1455691	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_3069	chr12	64857713	64858830	+	0	NA	Intergenic	Intergenic	-59640	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding
chipseq_peak_11895	chr6	119451634	119452665	+	0	NA	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	-2763	NM_001271757	22419	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding
chipseq_peak_8127	chr2	116201457	116202168	+	0	NA	Intergenic	Intergenic	-125716	NR_033447	69974	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA
chipseq_peak_614	chr1	94183321	94184839	+	0	NA	Intergenic	Intergenic	-131527	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding
chipseq_peak_12435	chr7	111395206	111396284	+	0	NA	Intergenic	Intergenic	-273070	NR_015573	75479	Mm.381620	NR_015573		1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA
chipseq_peak_1842	chr10	98135076	98135496	+	0	NA	Intergenic	Intergenic	-168196	NR_033537	100038699	Mm.467933	NR_033537		Gm10754	ENSMUSG00000074776	predicted gene 10754	ncRNA
chipseq_peak_7555	chr2	37945465	37946235	+	0	NA	intron (NM_146122, intron 12 of 21)	intron (NM_146122, intron 12 of 21)	169601	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding
chipseq_peak_495	chr1	70907379	70907860	+	0	NA	Intergenic	Intergenic	181904	NM_001310658	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_8283	chr2	142544697	142545541	+	0	NA	Intergenic	Intergenic	356345	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_2594	chr11	111064566	111066012	+	0	NA	promoter-TSS (NM_008425)	promoter-TSS (NM_008425)	-875	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
chipseq_peak_12996	chr8	73897263	73898249	+	0	NA	Intergenic	Intergenic	-545200	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large	BPFD#36|Gyltl1a|Mbp-1|Mbp1|enr|fg|froggy|mKIAA0609|myd	like-glycosyltransferase	protein-coding
chipseq_peak_12287	chr7	87487930	87488808	+	0	NA	intron (NM_011661, intron 1 of 4)	intron (NM_011661, intron 1 of 4)	5042	NM_011661	22173	Mm.238127	NM_011661	ENSMUSG00000004651	Tyr	Oca1|albino|c|skc35	tyrosinase	protein-coding
chipseq_peak_5755	chr16	51915660	51917044	+	0	NA	Intergenic	Intergenic	-115197	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
chipseq_peak_13282	chr9	5525841	5526487	+	0	NA	Intergenic	Intergenic	180688	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding
chipseq_peak_9501	chr4	12511953	12512470	+	0	NA	Intergenic	Intergenic	-340196	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
chipseq_peak_11527	chr6	55808538	55808985	+	0	NA	Intergenic	Intergenic	-28257	NM_001081665	232016	Mm.333084	NM_001081665	ENSMUSG00000037973	Ccdc129	D530004J12Rik|Gm458	coiled-coil domain containing 129	protein-coding
chipseq_peak_8424	chr2	181420514	181420862	+	0	NA	intron (NM_028125, intron 2 of 2)	intron (NM_028125, intron 2 of 2)	3700	NM_027656	72147	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding
chipseq_peak_5522	chr16	20400889	20401513	+	0	NA	intron (NM_176839, intron 6 of 6)	intron (NM_176839, intron 6 of 6)	25193	NM_176839	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding
chipseq_peak_2142	chr11	13336553	13337843	+	0	NA	Intergenic	Intergenic	841843	NR_131011	75280	Mm.108492	NR_131011		4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA
chipseq_peak_6216	chr17	29760082	29761346	+	0	NA	Intergenic	Intergenic	-43697	NM_026782	68597	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding
chipseq_peak_6647	chr18	22713602	22714510	+	0	NA	intron (NM_199024, intron 9 of 9)	intron (NM_199024, intron 9 of 9)	324607	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding
chipseq_peak_11354	chr6	33711574	33713587	+	0	NA	intron (NM_009148, intron 10 of 17)	intron (NM_009148, intron 10 of 17)	-316868	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding
chipseq_peak_9291	chr3	140634134	140634586	+	0	NA	Intergenic	Intergenic	577995	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding
chipseq_peak_14058	chrX	105006247	105007020	+	0	NA	Intergenic	Intergenic	63491	NR_015467	71445	Mm.242968	NR_015467	ENSMUSG00000087174	5530601H04Rik	AI835882	RIKEN cDNA 5530601H04 gene	ncRNA
chipseq_peak_9021	chr3	95203199	95204358	+	0	NA	exon (NM_029885, exon 6 of 10)	exon (NM_029885, exon 6 of 10)	-13679	NR_108026	100504029	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA
chipseq_peak_686	chr1	105946934	105947437	+	0	NA	Intergenic	Intergenic	-43221	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding
chipseq_peak_3338	chr12	106929120	106929561	+	0	NA	Intergenic	Intergenic	-213016	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA
chipseq_peak_12530	chr7	130119422	130119893	+	0	NA	Intergenic	Intergenic	147151	NM_201601	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding
chipseq_peak_1535	chr10	48211244	48212242	+	0	NA	Intergenic	Intergenic	884100	NR_046212	100418235	Mm.185993	NR_046212		C130030K03Rik	-	proteasome (prosome, macropain) subunit, alpha type 6 pseudogene	pseudo
chipseq_peak_4523	chr14	89142843	89143506	+	0	NA	Intergenic	Intergenic	-671778	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_1947	chr10	107948575	107949179	+	0	NA	intron (NR_131147, intron 1 of 5)	intron (NR_131147, intron 1 of 5)	2232	NR_131147	628877	Mm.363120	NR_131147		Gm29685	-	predicted gene, 29685	ncRNA
chipseq_peak_12899	chr8	56690962	56691973	+	0	NA	Intergenic	Intergenic	140333	NM_015791	50753	Mm.251174	NM_015791		Fbxo8	Fbx8	F-box protein 8	protein-coding
chipseq_peak_10560	chr5	62019234	62020003	+	0	NA	Intergenic	MER67C|LTR|ERV1	210775	NM_019468	14380	Mm.347430	NM_019468		G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding
chipseq_peak_11672	chr6	95217307	95217944	+	0	NA	Intergenic	Intergenic	99745	NM_001008785	243574	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding
chipseq_peak_7825	chr2	63452199	63455200	+	0	NA	Intergenic	Intergenic	-269412	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
chipseq_peak_13660	chr9	66999617	67000452	+	0	NA	Intergenic	Intergenic	-24550	NM_030717	80907	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding
chipseq_peak_13999	chrX	51610722	51611150	+	0	NA	intron (NM_001077202, intron 2 of 4)	intron (NM_001077202, intron 2 of 4)	69541	NM_015819	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding
chipseq_peak_10738	chr5	83400779	83401491	+	0	NA	Intergenic	Intergenic	-45940	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding
chipseq_peak_7635	chr2	44482451	44483152	+	0	NA	Intergenic	Intergenic	378821	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_9257	chr3	136007850	136008491	+	0	NA	Intergenic	Intergenic	-167901	NR_040540	71038	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA
chipseq_peak_150	chr1	28373412	28373773	+	0	NA	Intergenic	Intergenic	406660	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding
chipseq_peak_813	chr1	133024608	133025598	+	0	NA	intron (NM_008575, intron 1 of 11)	CpG	313	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding
chipseq_peak_4710	chr14	117012776	117013479	+	0	NA	intron (NM_011821, intron 1 of 8)	intron (NM_011821, intron 1 of 8)	87830	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_2504	chr11	91098178	91098615	+	0	NA	Intergenic	Intergenic	293705	NR_045956	73922	Mm.233289	NR_045956	ENSMUSG00000085940	4930405D11Rik	-	RIKEN cDNA 4930405D11 gene	ncRNA
chipseq_peak_169	chr1	31205319	31205861	+	0	NA	TTS (NM_153601)	TTS (NM_153601)	17066	NR_033445	70988	Mm.161414	NM_027637	ENSMUSG00000086727	4931428L18Rik	4930563O14Rik	RIKEN cDNA 4931428L18 gene	ncRNA
chipseq_peak_11443	chr6	45328098	45328415	+	0	NA	intron (NM_001004357, intron 1 of 23)	intron (NM_001004357, intron 1 of 23)	268195	NM_001004357	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_5797	chr16	56503976	56504276	+	0	NA	intron (NM_001014424, intron 1 of 36)	MER58D|DNA|hAT-Charlie	26280	NM_178790	320712	Mm.209236	NM_178790	ENSMUSG00000035258	Abi3bp	5033411B22Rik|AI506287|BG172926|D930038M13Rik|TARSH|eratin	ABI gene family, member 3 (NESH) binding protein	protein-coding
chipseq_peak_2726	chr12	15461136	15461599	+	0	NA	Intergenic	Intergenic	339734	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA
chipseq_peak_14006	chrX	58704224	58704465	+	0	NA	Intergenic	Intergenic	-207117	NM_023774	75352	Mm.60906	NM_023774	ENSMUSG00000046180	4930550L24Rik	mage-k1	RIKEN cDNA 4930550L24 gene	protein-coding
chipseq_peak_3342	chr12	108412794	108413292	+	0	NA	intron (NM_001043336, intron 1 of 21)	intron (NM_001043336, intron 1 of 21)	2410	NM_001043336	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding
chipseq_peak_12823	chr8	48322010	48323503	+	0	NA	intron (NM_011857, intron 11 of 28)	intron (NM_011857, intron 11 of 28)	212743	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding
chipseq_peak_8729	chr3	54267171	54267831	+	0	NA	3' UTR (NM_001253683, exon 4 of 4)	3' UTR (NM_001253683, exon 4 of 4)	-93606	NM_001313898	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding
chipseq_peak_11971	chr6	143219473	143219963	+	0	NA	Intergenic	Intergenic	-26170	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA
chipseq_peak_8282	chr2	142507538	142508411	+	0	NA	Intergenic	L1MCa|LINE|L1	393490	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_7476	chr2	15289595	15289936	+	0	NA	Intergenic	(TTA)n|Simple_repeat|Simple_repeat	234403	NM_029466	75869	Mm.174068	NM_029466		Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding
chipseq_peak_9089	chr3	113651464	113651829	+	0	NA	Intergenic	Intergenic	-21497	NM_026043	67225	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding
chipseq_peak_4455	chr14	79917294	79917779	+	0	NA	Intergenic	L2b|LINE|L2	-48360	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA
chipseq_peak_4207	chr14	26415192	26415604	+	0	NA	intron (NM_001310445, intron 22 of 22)	intron (NM_001310445, intron 22 of 22)	57851	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA
chipseq_peak_6230	chr17	30792705	30793538	+	0	NA	intron (NM_013811, intron 75 of 92)	B3|SINE|B2	-108746	NM_021332	14652	Mm.390969	NM_021332	ENSMUSG00000024027	Glp1r	GLP-1R|GLP1Rc	glucagon-like peptide 1 receptor	protein-coding
chipseq_peak_11377	chr6	36736776	36737322	+	0	NA	intron (NM_008973, intron 4 of 4)	intron (NM_008973, intron 4 of 4)	74312	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_3172	chr12	74679171	74679563	+	0	NA	Intergenic	Intergenic	381893	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding
chipseq_peak_2815	chr12	33027160	33027484	+	0	NA	Intergenic	Intergenic	65553	NM_001024478	68764	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding
chipseq_peak_9748	chr4	39404811	39405170	+	0	NA	Intergenic	Intergenic	-45303	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
chipseq_peak_654	chr1	99058044	99058365	+	0	NA	Intergenic	RMER3D-int|LTR|ERVK	637080	NM_027584	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding
chipseq_peak_8258	chr2	141078092	141078538	+	0	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-406839	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_11799	chr6	105604230	105604705	+	0	NA	Intergenic	Intergenic	73114	NR_132434	102638038	Mm.360282	NR_132434		Gm15631	OTTMUSG00000024600	predicted gene 15631	ncRNA
chipseq_peak_1551	chr10	50370583	50371000	+	0	NA	Intergenic	Intergenic	-221878	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
chipseq_peak_2179	chr11	22245098	22245528	+	0	NA	intron (NM_153078, intron 3 of 24)	intron (NM_153078, intron 3 of 24)	41482	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding
chipseq_peak_2909	chr12	43919116	43919652	+	0	NA	Intergenic	Intergenic	290684	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
chipseq_peak_7444	chr2	8561180	8561551	+	0	NA	Intergenic	Intergenic	-628150	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_2559	chr11	105855412	105855692	+	0	NA	intron (NM_181071, intron 10 of 25)	intron (NM_181071, intron 10 of 25)	88595	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding
chipseq_peak_806	chr1	132088001	132088804	+	0	NA	Intergenic	Intergenic	-20340	NM_172510	213006	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4	A230072B04|A930031D07Rik|AI850289	major facilitator superfamily domain containing 4	protein-coding
chipseq_peak_11007	chr5	129534409	129534963	+	0	NA	intron (NM_172276, intron 7 of 17)	intron (NM_172276, intron 7 of 17)	33455	NM_172276	231769	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding
chipseq_peak_4997	chr15	37268671	37269596	+	0	NA	intron (NM_026496, intron 1 of 15)	intron (NM_026496, intron 1 of 15)	36097	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3	grainyhead-like 2 (Drosophila)	protein-coding
chipseq_peak_13110	chr8	98081713	98082156	+	0	NA	Intergenic	Intergenic	-929953	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA
chipseq_peak_3249	chr12	89134958	89135261	+	0	NA	intron (NM_172544, intron 2 of 19)	intron (NM_172544, intron 2 of 19)	181719	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
chipseq_peak_3252	chr12	89377015	89377524	+	0	NA	intron (NM_172544, intron 8 of 19)	intron (NM_172544, intron 8 of 19)	423879	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
chipseq_peak_8621	chr3	39801970	39802418	+	0	NA	Intergenic	Intergenic	720718	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_5194	chr15	61427519	61428155	+	0	NA	Intergenic	Intergenic	346614	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA
chipseq_peak_11009	chr5	130294568	130295007	+	0	NA	intron (NM_001015876, intron 11 of 15)	intron (NM_001015876, intron 11 of 15)	37750	NM_001015876	100929	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding
chipseq_peak_376	chr1	56179159	56180328	+	0	NA	Intergenic	Intergenic	160765	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_5454	chr15	102657348	102658047	+	0	NA	Intergenic	Intergenic	13350	NM_026468	67942	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding
chipseq_peak_1596	chr10	56982411	56982952	+	0	NA	Intergenic	Intergenic	503672	NR_045353	74928	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA
chipseq_peak_1830	chr10	97062157	97062795	+	0	NA	Intergenic	Intergenic	26708	NR_045358	75301	Mm.108650	NR_045358		4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA
chipseq_peak_12626	chr8	10248827	10249413	+	0	NA	intron (NM_001081397, intron 1 of 35)	intron (NM_001081397, intron 1 of 35)	95197	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
chipseq_peak_13068	chr8	90015403	90015806	+	0	NA	Intergenic	L1MC|LINE|L1	332648	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
chipseq_peak_13177	chr8	108536671	108537189	+	0	NA	Intergenic	Intergenic	47747	NR_077224	109215	Mm.65282	NR_077224		Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA
chipseq_peak_2272	chr11	38675311	38676554	+	0	NA	Intergenic	Intergenic	-155887	NR_040295	100502917	Mm.61144	NR_040295		Gm12130	OTTMUSG00000005424	predicted gene 12130	ncRNA
chipseq_peak_12808	chr8	45558282	45558649	+	0	NA	intron (NM_172752, intron 1 of 22)	intron (NM_172752, intron 1 of 22)	50677	NM_001205219	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777	sorbin and SH3 domain containing 2	protein-coding
chipseq_peak_2516	chr11	94326599	94328060	+	0	NA	promoter-TSS (NM_146024)	promoter-TSS (NM_146024)	-672	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding
chipseq_peak_8404	chr2	170855072	170856619	+	0	NA	intron (NM_001163686, intron 6 of 7)	B4|SINE|B4	124038	NM_029761	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding
chipseq_peak_5631	chr16	39678403	39678710	+	0	NA	Intergenic	Intergenic	776211	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_952	chr1	157039266	157040419	+	0	NA	Intergenic	Intergenic	68808	NM_001305059	73435	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding
chipseq_peak_2087	chr10	125498167	125498973	+	0	NA	Intergenic	Intergenic	-170035	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
chipseq_peak_3662	chr13	58928692	58929670	+	0	NA	intron (NM_001282961, intron 12 of 17)	intron (NM_001282961, intron 12 of 17)	121484	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
chipseq_peak_11493	chr6	51591375	51593024	+	0	NA	Intergenic	Intergenic	47676	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding
chipseq_peak_4670	chr14	112686029	112686471	+	0	NA	Intergenic	Intergenic	664820	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
chipseq_peak_6279	chr17	49819936	49820365	+	0	NA	intron (NM_177052, intron 13 of 22)	MTE2a|LTR|ERVL-MaLR	204978	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding
chipseq_peak_5294	chr15	70383794	70384889	+	0	NA	Intergenic	Intergenic	460108	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_415	chr1	57529202	57529837	+	0	NA	Intergenic	Intergenic	-122845	NM_001302962	68736	Mm.288490	NM_001037742		Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding
chipseq_peak_125	chr1	25131587	25132895	+	0	NA	intron (NM_175642, intron 19 of 30)	intron (NM_175642, intron 19 of 30)	145713	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
chipseq_peak_930	chr1	151926812	151927319	+	0	NA	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	163255	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding
chipseq_peak_4662	chr14	111883806	111884254	+	0	NA	Intergenic	Intergenic	-137400	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
chipseq_peak_10407	chr5	39309298	39310136	+	0	NA	Intergenic	Intergenic	293857	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA
chipseq_peak_10663	chr5	72814113	72814760	+	0	NA	intron (NM_013689, intron 3 of 17)	MARNA|DNA|TcMar-Mariner	54012	NM_001113461	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding
chipseq_peak_2832	chr12	34526880	34527428	+	0	NA	intron (NM_024124, intron 2 of 11)	intron (NM_024124, intron 2 of 11)	1735	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
chipseq_peak_8689	chr3	50324404	50324821	+	0	NA	Intergenic	Intergenic	119001	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
chipseq_peak_5114	chr15	51472415	51472704	+	0	NA	Intergenic	Intergenic	-76949	NR_045092	100502643	Mm.131987	NR_045092		Gm19303	-	predicted gene, 19303	ncRNA
chipseq_peak_1536	chr10	48472981	48473330	+	0	NA	Intergenic	Intergenic	622688	NR_046212	100418235	Mm.185993	NR_046212		C130030K03Rik	-	proteasome (prosome, macropain) subunit, alpha type 6 pseudogene	pseudo
chipseq_peak_1901	chr10	103984507	103985498	+	0	NA	Intergenic	Intergenic	-157985	NM_001270901	100861891	Mm.441727	NM_001270901	ENSMUSG00000097550	Gm21304	-	predicted gene, 21304	protein-coding
chipseq_peak_12464	chr7	117106664	117107319	+	0	NA	Intergenic	Intergenic	-273988	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_11296	chr6	24966027	24966840	+	0	NA	Intergenic	MER57C2|LTR|ERV1	-10308	NM_177013	319832	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding
chipseq_peak_2625	chr11	120231513	120233593	+	0	NA	promoter-TSS (NM_198423)	promoter-TSS (NM_198423)	-394	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding
chipseq_peak_12309	chr7	90475432	90477211	+	0	NA	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-326	NM_026734	68472	Mm.289791	NM_026734		Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding
chipseq_peak_819	chr1	135641609	135642046	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-56472	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding
chipseq_peak_8790	chr3	61657618	61657926	+	0	NA	Intergenic	Intergenic	293265	NM_028712	74012	Mm.422674	NM_028712		Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding
chipseq_peak_6874	chr18	55562580	55562975	+	0	NA	Intergenic	Intergenic	-572597	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_1732	chr10	82170842	82171316	+	0	NA	Intergenic	Intergenic	43066	NM_001163064	216177	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding
chipseq_peak_288	chr1	43136951	43137773	+	0	NA	intron (NM_001289533, intron 3 of 5)	intron (NM_001289533, intron 3 of 5)	26599	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
chipseq_peak_3073	chr12	65371570	65372359	+	0	NA	Intergenic	Intergenic	146447	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding
chipseq_peak_2394	chr11	67925018	67925525	+	0	NA	intron (NM_027963, intron 13 of 13)	intron (NM_027963, intron 13 of 13)	-3118	NM_173754	216835	Mm.158885	NM_173754	ENSMUSG00000020905	Usp43	-	ubiquitin specific peptidase 43	protein-coding
chipseq_peak_10386	chr5	32334773	32335566	+	0	NA	intron (NM_001081407, intron 44 of 58)	intron (NM_001081407, intron 44 of 58)	-18411	NM_172147	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding
chipseq_peak_2774	chr12	27838336	27838966	+	0	NA	Intergenic	Intergenic	-495933	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding
chipseq_peak_12288	chr7	87787389	87788161	+	0	NA	intron (NM_001143834, intron 3 of 10)	intron (NM_001143834, intron 3 of 10)	203607	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding
chipseq_peak_5738	chr16	49736002	49736992	+	0	NA	intron (NM_028680, intron 5 of 10)	intron (NM_028680, intron 5 of 10)	37203	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding
chipseq_peak_5409	chr15	94652346	94652826	+	0	NA	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	23401	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding
chipseq_peak_8669	chr3	47863368	47864162	+	0	NA	Intergenic	Intergenic	162994	NR_040408	666202	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo
chipseq_peak_5505	chr16	11894783	11895187	+	0	NA	intron (NM_146067, intron 1 of 3)	intron (NM_146067, intron 1 of 3)	-6379	NR_033509	791359	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	ENSMUSG00000055015	predicted gene 9961	ncRNA
chipseq_peak_9092	chr3	113948319	113948805	+	0	NA	Intergenic	Intergenic	-81978	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding
chipseq_peak_9995	chr4	85334624	85334943	+	0	NA	intron (NM_019535, intron 1 of 8)	intron (NM_019535, intron 1 of 8)	129327	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding
chipseq_peak_2220	chr11	26775227	26775938	+	0	NA	Intergenic	Intergenic	-9526	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_6243	chr17	41227640	41228941	+	0	NA	Intergenic	Intergenic	293605	NM_008650	17850	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding
chipseq_peak_13236	chr8	120548532	120549124	+	0	NA	intron (NM_001145896, intron 1 of 15)	intron (NM_001145896, intron 1 of 15)	10132	NR_106159	102466849		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA
chipseq_peak_5737	chr16	49634963	49637091	+	0	NA	Intergenic	Intergenic	-63267	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding
chipseq_peak_5171	chr15	58472470	58473132	+	0	NA	Intergenic	Intergenic	57333	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	D15Ertd621e	AV220772|BC033609|Fam91a1|SKIN|mKIAA0493	DNA segment, Chr 15, ERATO Doi 621, expressed	protein-coding
chipseq_peak_9400	chr3	153493001	153494007	+	0	NA	intron (NM_011372, intron 2 of 4)	intron (NM_011372, intron 2 of 4)	-194855	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA
chipseq_peak_7326	chr19	57609712	57609939	+	0	NA	Intergenic	Intergenic	-1209	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding
chipseq_peak_7580	chr2	42418771	42419461	+	0	NA	intron (NM_053011, intron 1 of 90)	intron (NM_053011, intron 1 of 90)	28452	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
chipseq_peak_9974	chr4	81564411	81566985	+	0	NA	Intergenic	Intergenic	-78685	NR_030570	100124446		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA
chipseq_peak_9136	chr3	117991998	117992340	+	0	NA	Intergenic	Intergenic	-123233	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_2413	chr11	71902102	71903032	+	0	NA	Intergenic	Intergenic	37555	NR_045942	73816	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA
chipseq_peak_13941	chr9	119510596	119511192	+	0	NA	intron (NM_001253860, intron 19 of 26)	intron (NM_001253860, intron 19 of 26)	51784	NM_001253860	20271	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding
chipseq_peak_3723	chr13	77396407	77397642	+	0	NA	intron (NM_001145676, intron 19 of 19)	intron (NM_001145676, intron 19 of 19)	261488	NM_001145676	72371	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding
chipseq_peak_1528	chr10	46697460	46698189	+	0	NA	Intergenic	Intergenic	453075	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA
chipseq_peak_8128	chr2	116254684	116254975	+	0	NA	Intergenic	Intergenic	-178733	NR_033447	69974	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA
chipseq_peak_12224	chr7	74942605	74943541	+	0	NA	Intergenic	Intergenic	-87138	NR_131122	75205	Mm.399304	NR_131122		4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA
chipseq_peak_11128	chr5	151136402	151137664	+	0	NA	intron (NM_146258, intron 1 of 13)	intron (NM_146258, intron 1 of 13)	53160	NM_146258	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding
chipseq_peak_5006	chr15	39221860	39222160	+	0	NA	intron (NM_001256382, intron 1 of 26)	intron (NM_001256382, intron 1 of 26)	23724	NM_053271	116838	Mm.309296	NM_053271		Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding
chipseq_peak_6781	chr18	43144519	43145964	+	0	NA	Intergenic	Intergenic	-62456	NM_178749	269019	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding
chipseq_peak_8860	chr3	70482495	70483150	+	0	NA	Intergenic	Intergenic	324469	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
chipseq_peak_4491	chr14	86246520	86248297	+	0	NA	intron (NR_040457, intron 1 of 3)	intron (NR_040457, intron 1 of 3)	1438	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
chipseq_peak_3345	chr12	108601486	108601848	+	0	NA	intron (NM_007965, intron 1 of 12)	hAT-N1_Mam|DNA|hAT?	-4099	NM_001163395	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding
chipseq_peak_13523	chr9	48548913	48549544	+	0	NA	Intergenic	L1MC2|LINE|L1	53885	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding
chipseq_peak_6520	chr17	90435734	90437789	+	0	NA	intron (NM_020252, intron 17 of 22)	intron (NM_020252, intron 17 of 22)	-424408	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_1819	chr10	95599746	95600219	+	0	NA	Intergenic	Intergenic	-35815	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding
chipseq_peak_11059	chr5	135545194	135545765	+	0	NA	promoter-TSS (NM_146001)	promoter-TSS (NM_146001)	-357	NM_146001	215114	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding
chipseq_peak_13423	chr9	30376962	30377369	+	0	NA	Intergenic	MLTR11B|LTR|ERVK	-50164	NM_028874	102607	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding
chipseq_peak_7779	chr2	60054019	60054420	+	0	NA	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	71521	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding
chipseq_peak_11863	chr6	113856792	113857228	+	0	NA	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	34366	NM_001036684	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding
chipseq_peak_3360	chr12	117636367	117636808	+	0	NA	intron (NM_175930, intron 9 of 27)	intron (NM_175930, intron 9 of 27)	120108	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
chipseq_peak_8747	chr3	55347571	55348124	+	0	NA	intron (NM_019978, intron 3 of 16)	intron (NM_019978, intron 3 of 16)	105321	NM_001111053	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
chipseq_peak_1330	chr10	20585770	20586445	+	0	NA	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	138961	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding
chipseq_peak_2287	chr11	39733400	39734549	+	0	NA	Intergenic	Intergenic	-343749	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_3174	chr12	74792080	74792405	+	0	NA	Intergenic	LTR33A|LTR|ERVL	385090	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding
chipseq_peak_7391	chr2	7146921	7147924	+	0	NA	intron (NM_001110231, intron 3 of 15)	intron (NM_001110231, intron 3 of 15)	-66120	NM_001110230	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_6820	chr18	51284944	51285359	+	0	NA	intron (NM_001081224, intron 1 of 1)	HAL1b|LINE|L1	167253	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding
chipseq_peak_3881	chr13	91446182	91447521	+	0	NA	Intergenic	Intergenic	-14246	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding
chipseq_peak_2684	chr12	10984362	10984857	+	0	NA	Intergenic	Intergenic	-63204	NR_045860	71457	Mm.95280	NR_045860		7420701I03Rik	-	RIKEN cDNA 7420701I03 gene	ncRNA
chipseq_peak_12565	chr7	137500387	137500821	+	0	NA	Intergenic	RSINE1|SINE|B4	62930	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo
chipseq_peak_7250	chr19	42909792	42910293	+	0	NA	intron (NM_001081257, intron 8 of 11)	intron (NM_001081257, intron 8 of 11)	-130066	NM_019424	192236	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	Hermansky-Pudlak syndrome 1 homolog (human)	protein-coding
chipseq_peak_8407	chr2	171641539	171642130	+	0	NA	Intergenic	Intergenic	320965	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA
chipseq_peak_10279	chr5	12191025	12192212	+	0	NA	Intergenic	Intergenic	-191548	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
chipseq_peak_4458	chr14	80029341	80029769	+	0	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	29253	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_5611	chr16	36775462	36776073	+	0	NA	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	9195	NM_021301	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding
chipseq_peak_2095	chr10	126300005	126300659	+	0	NA	Intergenic	Intergenic	334113	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
chipseq_peak_13620	chr9	60878185	60878687	+	0	NA	intron (NM_028283, intron 18 of 18)	intron (NM_028283, intron 18 of 18)	83888	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
chipseq_peak_5991	chr16	75221673	75222528	+	0	NA	Intergenic	Intergenic	363961	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_5040	chr15	43764495	43765601	+	0	NA	Intergenic	Intergenic	104981	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
chipseq_peak_4530	chr14	90804801	90805415	+	0	NA	Intergenic	L1ME1|LINE|L1	678217	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
chipseq_peak_9553	chr4	16357597	16359150	+	0	NA	Intergenic	Intergenic	194263	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA
chipseq_peak_4922	chr15	25801877	25802492	+	0	NA	intron (NM_019472, intron 33 of 40)	intron (NM_019472, intron 33 of 40)	-41114	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding
chipseq_peak_5757	chr16	51966641	51967840	+	0	NA	Intergenic	Intergenic	-64309	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
chipseq_peak_14093	chrX	143639849	143640360	+	0	NA	intron (NM_008778, intron 1 of 14)	L1M5|LINE|L1	-25641	NM_001195049	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding
chipseq_peak_5014	chr15	40397015	40397636	+	0	NA	Intergenic	Intergenic	129952	NR_046185	432945	Mm.321981	NR_046185	ENSMUSG00000056332	Gm16294	EG432945|OTTMUSG00000033304	predicted gene 16294	ncRNA
chipseq_peak_4991	chr15	35861925	35863127	+	0	NA	intron (NM_177151, intron 43 of 61)	intron (NM_177151, intron 43 of 61)	75720	NM_053071	12864	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding
chipseq_peak_10466	chr5	45474203	45474681	+	0	NA	Intergenic	Intergenic	-18932	NM_024434	66988	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding
chipseq_peak_4005	chr13	107365361	107365744	+	0	NA	Intergenic	Intergenic	-104270	NR_045083	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA
chipseq_peak_9764	chr4	47247627	47248037	+	0	NA	intron (NM_009928, intron 4 of 39)	intron (NM_009928, intron 4 of 39)	39820	NM_009928	12819	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding
chipseq_peak_4963	chr15	31634492	31635071	+	0	NA	Intergenic	Intergenic	32665	NM_026546	68073	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding
chipseq_peak_2831	chr12	34506361	34506928	+	0	NA	intron (NM_024124, intron 2 of 11)	intron (NM_024124, intron 2 of 11)	22245	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
chipseq_peak_13431	chr9	32215613	32217650	+	0	NA	intron (NM_001195632, intron 10 of 21)	intron (NM_001195632, intron 10 of 21)	-7618	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding
chipseq_peak_1888	chr10	101588518	101589123	+	0	NA	Intergenic	L1MC2|LINE|L1	-92667	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
chipseq_peak_3521	chr13	29800084	29800467	+	0	NA	intron (NR_131896, intron 4 of 16)	intron (NR_131896, intron 4 of 16)	55398	NM_144536	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
chipseq_peak_3317	chr12	100166270	100167651	+	0	NA	Intergenic	Intergenic	-7307	NM_183155	217827	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding
chipseq_peak_8406	chr2	170873390	170873834	+	0	NA	intron (NM_001163686, intron 7 of 7)	intron (NM_001163686, intron 7 of 7)	141805	NM_029761	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding
chipseq_peak_6495	chr17	87745233	87745636	+	0	NA	TTS (NM_199251)	TTS (NM_199251)	52560	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding
chipseq_peak_9528	chr4	13832943	13833366	+	0	NA	intron (NM_009822, intron 1 of 10)	intron (NM_009822, intron 1 of 10)	48372	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_13200	chr8	112997276	112997663	+	0	NA	Intergenic	MER21C|LTR|ERVL	-69793	NR_033584	791378	Mm.350576	NR_033584		Gm10280	ENSMUSG00000069883	predicted gene 10280	ncRNA
chipseq_peak_2141	chr11	13296471	13296870	+	0	NA	Intergenic	Intergenic	-831710	NM_001282993	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
chipseq_peak_5376	chr15	90733696	90734245	+	0	NA	Intergenic	Intergenic	-54582	NM_001033851	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
chipseq_peak_5459	chr15	103239916	103240928	+	0	NA	promoter-TSS (NR_104427)	promoter-TSS (NR_104427)	-10	NR_002885	654467	Mm.432031	NR_002885		Gm10052	ENSMUSG00000058922|XM_001481145	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo
chipseq_peak_4500	chr14	87224986	87225545	+	0	NA	Intergenic	Intergenic	-84151	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
chipseq_peak_3596	chr13	46087687	46088365	+	0	NA	Intergenic	Intergenic	-123035	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding
chipseq_peak_7414	chr2	7821539	7822407	+	0	NA	Intergenic	Intergenic	-425775	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_633	chr1	96596053	96597079	+	0	NA	Intergenic	Intergenic	66007	NR_040478	75159	Mm.243854	NR_040478	ENSMUSG00000100589	4930533P14Rik	-	RIKEN cDNA 4930533P14 gene	ncRNA
chipseq_peak_13413	chr9	29750159	29750848	+	0	NA	intron (NM_172290, intron 1 of 7)	intron (NM_172290, intron 1 of 7)	212626	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_12114	chr7	53608423	53610182	+	0	NA	Intergenic	Intergenic	282587	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
chipseq_peak_1172	chr1	188214478	188215423	+	0	NA	TTS (NM_001243792)	TTS (NM_001243792)	-47888	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin	Usher syndrome 2A (autosomal recessive, mild)	protein-coding
chipseq_peak_7010	chr18	74910855	74911259	+	0	NA	Intergenic	L1M4|LINE|L1	50206	NM_010720	16891	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding
chipseq_peak_7966	chr2	83942485	83943127	+	0	NA	Intergenic	Intergenic	-1580	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding
chipseq_peak_538	chr1	77175199	77175536	+	0	NA	Intergenic	Intergenic	321401	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA
chipseq_peak_13617	chr9	60857908	60858859	+	0	NA	intron (NM_028283, intron 9 of 18)	intron (NM_028283, intron 9 of 18)	63835	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
chipseq_peak_9978	chr4	82437193	82438098	+	0	NA	intron (NM_001286131, intron 2 of 9)	intron (NM_001286131, intron 2 of 9)	68134	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding
chipseq_peak_1356	chr10	25633080	25633605	+	0	NA	Intergenic	Intergenic	-97070	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding
chipseq_peak_4296	chr14	49518667	49519320	+	0	NA	intron (NM_029238, intron 1 of 7)	intron (NM_029238, intron 1 of 7)	6844	NM_029238	75288	Mm.78738	NM_029238	ENSMUSG00000021852	Slc35f4	4930550L21Rik	solute carrier family 35, member F4	protein-coding
chipseq_peak_6033	chr16	77596259	77596966	+	0	NA	Intergenic	Intergenic	-2324	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA
chipseq_peak_1630	chr10	64940878	64941744	+	0	NA	intron (NM_001164376, intron 15 of 17)	intron (NM_001164376, intron 15 of 17)	-851056	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_12110	chr7	52845533	52846237	+	0	NA	Intergenic	Intergenic	-830169	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding
chipseq_peak_11204	chr6	13967721	13968778	+	0	NA	Intergenic	B4A|SINE|B4	96680	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
chipseq_peak_10856	chr5	102953114	102954049	+	0	NA	intron (NM_001310683, intron 11 of 13)	intron (NM_001310683, intron 11 of 13)	104729	NM_001310686	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
chipseq_peak_12686	chr8	23788260	23788683	+	0	NA	intron (NM_177086, intron 2 of 6)	intron (NM_177086, intron 2 of 6)	118810	NM_177086	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding
chipseq_peak_5714	chr16	47533770	47535289	+	0	NA	Intergenic	Intergenic	-749206	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_11611	chr6	77644471	77645528	+	0	NA	intron (NM_145732, intron 5 of 18)	intron (NM_145732, intron 5 of 18)	-262524	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA
chipseq_peak_3119	chr12	70118972	70119566	+	0	NA	Intergenic	Intergenic	-7234	NM_001286079	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding
chipseq_peak_5320	chr15	73872167	73872634	+	0	NA	Intergenic	Intergenic	-32729	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding
chipseq_peak_10164	chr4	124594825	124595271	+	0	NA	Intergenic	Intergenic	25869	NR_045819	108809	Mm.250313	NR_045819		4933407E24Rik	-	RIKEN cDNA 4933407E24 gene	ncRNA
chipseq_peak_30	chr1	10451974	10452825	+	0	NA	intron (NM_177834, intron 6 of 10)	intron (NM_177834, intron 6 of 10)	-219729	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding
chipseq_peak_3611	chr13	46640777	46641626	+	0	NA	intron (NM_026056, intron 11 of 12)	intron (NM_026056, intron 11 of 12)	-28321	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding
chipseq_peak_3150	chr12	73627479	73628243	+	0	NA	intron (NM_001313977, intron 2 of 14)	L2c|LINE|L2	43065	NM_001313977	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding
chipseq_peak_9393	chr3	152673492	152674106	+	0	NA	intron (NR_040386, intron 1 of 3)	L1ME4c|LINE|L1	-5659	NM_001081277	229949	Mm.207057	NM_001081277	ENSMUSG00000039058	Ak5	-	adenylate kinase 5	protein-coding
chipseq_peak_4422	chr14	76503100	76504322	+	0	NA	promoter-TSS (NM_009366)	promoter-TSS (NM_009366)	-515	NM_001310647	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding
chipseq_peak_3319	chr12	100201453	100202329	+	0	NA	intron (NM_001313934, intron 1 of 5)	intron (NM_001313934, intron 1 of 5)	1747	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding
chipseq_peak_8168	chr2	129998395	129998853	+	0	NA	Intergenic	Intergenic	-13716	NM_009374	21818	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3	transglutaminase 3, E polypeptide	protein-coding
chipseq_peak_11804	chr6	106381500	106382120	+	0	NA	intron (NM_173004, intron 7 of 19)	intron (NM_173004, intron 7 of 19)	263045	NM_001109751	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding
chipseq_peak_4342	chr14	62855498	62856428	+	0	NA	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	-9579	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA
chipseq_peak_7490	chr2	17770308	17770651	+	0	NA	Intergenic	Intergenic	-39411	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding
chipseq_peak_8633	chr3	40812854	40813502	+	0	NA	intron (NM_011495, intron 13 of 15)	(TATATG)n|Simple_repeat|Simple_repeat	13227	NR_045576	20873	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo-like kinase 4	protein-coding
chipseq_peak_13704	chr9	79004375	79005227	+	0	NA	Intergenic	Intergenic	389255	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding
chipseq_peak_11726	chr6	99589284	99590088	+	0	NA	Intergenic	Intergenic	77085	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding
chipseq_peak_4875	chr15	20450512	20451102	+	0	NA	Intergenic	Intergenic	215943	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_5424	chr15	95185520	95187032	+	0	NA	Intergenic	Intergenic	-36958	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_6589	chr18	13235378	13235605	+	0	NA	Intergenic	L1MA5|LINE|L1	228501	NM_153087	225192	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding
chipseq_peak_3261	chr12	91877686	91878108	+	0	NA	Intergenic	Intergenic	-28740	NM_001039089	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chipseq_peak_1998	chr10	112929086	112929451	+	0	NA	promoter-TSS (NM_001033474)	promoter-TSS (NM_001033474)	-242	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding
chipseq_peak_14121	chrX	160804364	160804729	+	0	NA	intron (NM_001024624, intron 18 of 18)	intron (NM_001024624, intron 18 of 18)	36533	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding
chipseq_peak_11641	chr6	86064538	86065080	+	0	NA	intron (NM_001271858, intron 1 of 15)	intron (NM_001271858, intron 1 of 15)	-13239	NM_001271861	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding
chipseq_peak_3244	chr12	86179289	86180045	+	0	NA	intron (NR_046081, intron 4 of 4)	intron (NR_046081, intron 4 of 4)	10326	NR_046081	328136	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA
chipseq_peak_7840	chr2	65847235	65847886	+	0	NA	intron (NM_178634, intron 1 of 5)	intron (NM_178634, intron 1 of 5)	1793	NM_001290666	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding
chipseq_peak_1234	chr10	6647615	6648028	+	0	NA	Intergenic	MIRb|SINE|MIR	-110772	NM_001302795	18390	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding
chipseq_peak_5084	chr15	46849008	46850707	+	0	NA	Intergenic	Intergenic	226552	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA
chipseq_peak_8644	chr3	41962760	41963582	+	0	NA	Intergenic	Intergenic	220553	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
chipseq_peak_8874	chr3	73444926	73445935	+	0	NA	intron (NR_040547, intron 2 of 7)	AT_rich|Low_complexity|Low_complexity	36221	NR_040547	74693	Mm.292227	NR_040547	ENSMUSG00000102362	4930509J09Rik	-	RIKEN cDNA 4930509J09 gene	ncRNA
chipseq_peak_13170	chr8	107602948	107603446	+	0	NA	Intergenic	Intergenic	-14715	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding
chipseq_peak_9359	chr3	149459290	149459666	+	0	NA	Intergenic	Intergenic	184741	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_5635	chr16	40096829	40097339	+	0	NA	Intergenic	LTR16C|LTR|ERVL	1194739	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_13785	chr9	97048450	97048817	+	0	NA	Intergenic	L1M5|LINE|L1	-30278	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
chipseq_peak_955	chr1	157888451	157889062	+	0	NA	Intergenic	Intergenic	362586	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding
chipseq_peak_6368	chr17	65170307	65170985	+	0	NA	Intergenic	Intergenic	370136	NM_001289486	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding
chipseq_peak_452	chr1	64633228	64633594	+	0	NA	Intergenic	Intergenic	-16243	NM_025964	67099	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding
chipseq_peak_1937	chr10	106684949	106685945	+	0	NA	intron (NM_001205341, intron 3 of 31)	intron (NM_001205341, intron 3 of 31)	-82967	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA
chipseq_peak_5725	chr16	48428947	48430211	+	0	NA	Intergenic	Intergenic	-1658	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding
chipseq_peak_10012	chr4	87466749	87467605	+	0	NA	Intergenic	Intergenic	-236637	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
chipseq_peak_10325	chr5	16937867	16938139	+	0	NA	Intergenic	Intergenic	384102	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
chipseq_peak_12998	chr8	75625453	75625831	+	0	NA	intron (NM_001164235, intron 6 of 13)	intron (NM_001164235, intron 6 of 13)	176948	NM_027944	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding
chipseq_peak_10282	chr5	12938013	12938817	+	0	NA	Intergenic	MER90|LTR|ERV1	-458369	NM_001243072	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
chipseq_peak_11508	chr6	54312997	54313504	+	0	NA	intron (NR_033635, intron 4 of 13)	L1_Mur3|LINE|L1	-13762	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding
chipseq_peak_12373	chr7	94249447	94249897	+	0	NA	Intergenic	Intergenic	1169793	NM_021427	58238	Mm.113787	NM_021427		Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding
chipseq_peak_3536	chr13	36801830	36802303	+	0	NA	Intergenic	Intergenic	-67589	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding
chipseq_peak_4625	chr14	106269658	106270029	+	0	NA	Intergenic	Intergenic	163645	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding
chipseq_peak_807	chr1	132268250	132268716	+	0	NA	Intergenic	Intergenic	-30143	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding
chipseq_peak_4765	chr14	124438046	124438358	+	0	NA	intron (NM_207667, intron 1 of 4)	intron (NM_207667, intron 1 of 4)	238925	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding
chipseq_peak_4914	chr15	24566772	24567561	+	0	NA	Intergenic	Intergenic	846598	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
chipseq_peak_9097	chr3	115252606	115253949	+	0	NA	Intergenic	Intergenic	172312	NM_153157	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding
chipseq_peak_9396	chr3	153065939	153066220	+	0	NA	Intergenic	Intergenic	-83872	NM_012028	26938	Mm.40915	NM_012028		St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding
chipseq_peak_451	chr1	64285892	64286512	+	0	NA	Intergenic	Intergenic	-164813	NM_033563	93691	Mm.29466	NM_033563		Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding
chipseq_peak_10694	chr5	77891200	77892937	+	0	NA	Intergenic	Intergenic	426580	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
chipseq_peak_6848	chr18	54451941	54453686	+	0	NA	non-coding (NR_040338, exon 3 of 3)	non-coding (NR_040338, exon 3 of 3)	30518	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA
chipseq_peak_9680	chr4	31361564	31362105	+	0	NA	Intergenic	Intergenic	-602273	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_11423	chr6	41911578	41911961	+	0	NA	Intergenic	Intergenic	-39859	NM_027832	71578	Mm.96996	NM_027832	ENSMUSG00000029865	Sval1	9130404C18Rik|SLP-C	seminal vesicle antigen-like 1	protein-coding
chipseq_peak_9872	chr4	70521715	70522162	+	0	NA	intron (NM_172694, intron 1 of 5)	intron (NM_172694, intron 1 of 5)	12990	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
chipseq_peak_9243	chr3	133876401	133877174	+	0	NA	Intergenic	Intergenic	-332397	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding
chipseq_peak_9230	chr3	129686974	129687250	+	0	NA	intron (NM_010113, intron 20 of 23)	intron (NM_010113, intron 20 of 23)	37974	NM_001310737	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
chipseq_peak_3167	chr12	74382630	74382942	+	0	NA	Intergenic	MLT1D-int|LTR|ERVL-MaLR	85312	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding
chipseq_peak_8583	chr3	32060107	32060678	+	0	NA	intron (NM_028231, intron 2 of 5)	intron (NM_028231, intron 2 of 5)	157689	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding
chipseq_peak_2933	chr12	49372037	49372416	+	0	NA	Intergenic	Intergenic	-10657	NM_001160112	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding
chipseq_peak_13877	chr9	110255617	110255934	+	0	NA	intron (NM_001166273, intron 3 of 4)	Kanga1|DNA|TcMar-Tc2	11992	NM_001166273	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding
chipseq_peak_10605	chr5	66672681	66673115	+	0	NA	intron (NR_102714, intron 1 of 4)	intron (NR_102714, intron 1 of 4)	-3223	NM_011670	22223	Mm.29807	NM_011670	ENSMUSG00000029223	Uchl1	AW822034|C88048|PGP 9.5|PGP9.5|R75593|UCH-L1|UCHL-1|gad	ubiquitin carboxy-terminal hydrolase L1	protein-coding
chipseq_peak_8824	chr3	67146917	67148188	+	0	NA	intron (NM_025822, intron 4 of 9)	intron (NM_025822, intron 4 of 9)	161880	NM_025822	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding
chipseq_peak_3823	chr13	84366930	84367283	+	0	NA	Intergenic	Intergenic	144810	NR_029419	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
chipseq_peak_4442	chr14	78282556	78282923	+	0	NA	intron (NM_011613, intron 4 of 4)	intron (NM_011613, intron 4 of 4)	25304	NM_011613	21943	Mm.249221	NM_011613	ENSMUSG00000022015	Tnfsf11	Ly109l|ODF|OPG|OPGL|RANKL|Trance	tumor necrosis factor (ligand) superfamily, member 11	protein-coding
chipseq_peak_3474	chr13	21233878	21234830	+	0	NA	Intergenic	Intergenic	54423	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding
chipseq_peak_5133	chr15	52994425	52994771	+	0	NA	Intergenic	Intergenic	282153	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
chipseq_peak_8267	chr2	141844325	141845611	+	0	NA	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	1056496	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_12244	chr7	76379623	76379893	+	0	NA	intron (NM_001199224, intron 5 of 22)	intron (NM_001199224, intron 5 of 22)	149871	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_7754	chr2	57812494	57813235	+	0	NA	Intergenic	Intergenic	-185291	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
chipseq_peak_10446	chr5	44528825	44529357	+	0	NA	intron (NM_001077398, intron 5 of 8)	intron (NM_001077398, intron 5 of 8)	270655	NM_001077398	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding
chipseq_peak_8409	chr2	171713116	171713775	+	0	NA	Intergenic	Intergenic	249354	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA
chipseq_peak_1112	chr1	177428328	177429947	+	0	NA	Intergenic	Intergenic	-15524	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_8347	chr2	158246765	158247037	+	0	NA	Intergenic	Intergenic	-3336	NR_106156	102466240		NR_106156	ENSMUSG00000098765	Mir7685	Gm27757|mmu-mir-7685	microRNA 7685	ncRNA
chipseq_peak_6970	chr18	69127941	69128654	+	0	NA	Intergenic	Intergenic	-106024	NR_105780	102465187		NR_105780	ENSMUSG00000098366	Mir145b	Gm27644|mmu-mir-145b	microRNA 145b	ncRNA
chipseq_peak_13875	chr9	110205988	110206915	+	0	NA	intron (NM_009211, intron 24 of 27)	intron (NM_009211, intron 24 of 27)	-37332	NM_013884	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding
chipseq_peak_2835	chr12	34871019	34871454	+	0	NA	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	45859	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
chipseq_peak_8425	chr2	181766567	181767244	+	0	NA	promoter-TSS (NM_001171616)	promoter-TSS (NM_001171616)	-124	NM_001171616	17932	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding
chipseq_peak_5500	chr16	9910704	9910995	+	0	NA	intron (NM_008170, intron 1 of 11)	L1MD|LINE|L1	81684	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding
chipseq_peak_3126	chr12	70430458	70430884	+	0	NA	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	-22483	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding
chipseq_peak_7124	chr19	20540896	20541802	+	0	NA	intron (NR_045778, intron 1 of 2)	intron (NR_045778, intron 1 of 2)	10981	NR_045778	320155	Mm.447252	NR_045778		C730002L08Rik	-	RIKEN cDNA C730002L08 gene	ncRNA
chipseq_peak_4526	chr14	90412569	90413238	+	0	NA	Intergenic	Intergenic	286012	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
chipseq_peak_8083	chr2	110896219	110897579	+	0	NA	intron (NM_001128103, intron 1 of 26)	intron (NM_001128103, intron 1 of 26)	53345	NM_001128103	228432	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding
chipseq_peak_11890	chr6	118837142	118837670	+	0	NA	intron (NM_001159533, intron 3 of 46)	intron (NM_001159533, intron 3 of 46)	-42752	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA
chipseq_peak_9703	chr4	32533585	32534173	+	0	NA	intron (NM_001109661, intron 2 of 4)	intron (NM_001109661, intron 2 of 4)	37783	NR_026843	414068	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA
chipseq_peak_13560	chr9	52203185	52203638	+	0	NA	Intergenic	Intergenic	-35300	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding
chipseq_peak_9035	chr3	100924288	100924787	+	0	NA	intron (NM_001165952, intron 1 of 6)	intron (NM_001165952, intron 1 of 6)	2044	NM_001165953	229644	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding
chipseq_peak_5872	chr16	66086569	66086944	+	0	NA	Intergenic	Intergenic	271123	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like 3 (Drosophila)	protein-coding
chipseq_peak_6870	chr18	55457671	55458171	+	0	NA	Intergenic	Intergenic	-467741	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_13189	chr8	111808003	111808346	+	0	NA	intron (NM_011801, intron 5 of 6)	Charlie1a|DNA|hAT-Charlie	46136	NM_011801	23837	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding
chipseq_peak_13121	chr8	99348018	99349932	+	0	NA	intron (NR_133570, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	67496	NM_001285913	12564	Mm.441131	NM_007667	ENSMUSG00000036510	Cdh8	AI851472|cad8	cadherin 8	protein-coding
chipseq_peak_7282	chr19	49614992	49615538	+	0	NA	Intergenic	Intergenic	1063381	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_2433	chr11	77896006	77897607	+	0	NA	Intergenic	Intergenic	-2934	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding
chipseq_peak_6742	chr18	35164822	35166315	+	0	NA	intron (NM_009818, intron 3 of 17)	ID_B1|SINE|B4	46656	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding
chipseq_peak_1943	chr10	107324012	107324346	+	0	NA	intron (NM_001039354, intron 2 of 5)	intron (NM_001039354, intron 2 of 5)	51785	NM_001284329	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding
chipseq_peak_7141	chr19	22769713	22770165	+	0	NA	TTS (NM_001035246)	TTS (NM_001035246)	19334	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA
chipseq_peak_8845	chr3	68466803	68467085	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	-1239	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_5988	chr16	75083562	75084465	+	0	NA	Intergenic	Intergenic	502048	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_9962	chr4	80678465	80681017	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-154472	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_11335	chr6	32878501	32879118	+	0	NA	intron (NM_025336, intron 5 of 7)	intron (NM_025336, intron 5 of 7)	181343	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
chipseq_peak_8899	chr3	78158416	78159085	+	0	NA	Intergenic	Intergenic	986137	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_9773	chr4	47933289	47935181	+	0	NA	Intergenic	Intergenic	-111070	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding
chipseq_peak_13753	chr9	91122492	91123375	+	0	NA	Intergenic	Intergenic	242866	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding
chipseq_peak_1299	chr10	16139260	16139606	+	0	NA	Intergenic	Intergenic	347656	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA
chipseq_peak_14007	chrX	58895301	58895769	+	0	NA	Intergenic	Intergenic	-15926	NM_023774	75352	Mm.60906	NM_023774	ENSMUSG00000046180	4930550L24Rik	mage-k1	RIKEN cDNA 4930550L24 gene	protein-coding
chipseq_peak_3412	chr13	8784752	8785307	+	0	NA	Intergenic	Intergenic	86015	NM_001039389	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding
chipseq_peak_9320	chr3	143727273	143727867	+	0	NA	Intergenic	Intergenic	-15427	NR_040405	621809	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA
chipseq_peak_2628	chr12	4374440	4375199	+	0	NA	intron (NM_010881, intron 2 of 22)	intron (NM_010881, intron 2 of 22)	102363	NM_010881	17977	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|SRC-1|SRC1|bHLHe74	nuclear receptor coactivator 1	protein-coding
chipseq_peak_3659	chr13	58694537	58695434	+	0	NA	Intergenic	Intergenic	67326	NR_045469	67585	Mm.84751	NR_045469		4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA
chipseq_peak_1082	chr1	176939332	176940539	+	0	NA	intron (NM_029756, intron 13 of 17)	intron (NM_029756, intron 13 of 17)	-103802	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_134	chr1	25826873	25827174	+	0	NA	intron (NM_175642, intron 1 of 30)	intron (NM_175642, intron 1 of 30)	2684	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
chipseq_peak_11408	chr6	40370921	40371895	+	0	NA	intron (NM_023538, intron 8 of 15)	intron (NM_023538, intron 8 of 15)	45930	NM_023538	69923	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding
chipseq_peak_13674	chr9	72197322	72197858	+	0	NA	Intergenic	Intergenic	-77298	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding
chipseq_peak_1047	chr1	171222494	171222821	+	0	NA	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-143	NM_001037170	641376	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40 homolog-like (yeast)	protein-coding
chipseq_peak_2813	chr12	32986224	32986580	+	0	NA	Intergenic	L1M2|LINE|L1	32216	NM_198710	19027	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding
chipseq_peak_9308	chr3	142851704	142852133	+	0	NA	intron (NM_178654, intron 2 of 21)	intron (NM_178654, intron 2 of 21)	30086	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding
chipseq_peak_7876	chr2	69781743	69782071	+	0	NA	intron (NM_001077684, intron 3 of 8)	intron (NM_001077684, intron 3 of 8)	7579	NM_001077684	75051	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding
chipseq_peak_6407	chr17	70443012	70443381	+	0	NA	intron (NM_027712, intron 1 of 9)	intron (NM_027712, intron 1 of 9)	18404	NM_177639	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding
chipseq_peak_12780	chr8	42017268	42017976	+	0	NA	intron (NR_045497, intron 3 of 5)	intron (NR_045497, intron 3 of 5)	190355	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA
chipseq_peak_14011	chrX	59896010	59897407	+	0	NA	Intergenic	L1M5|LINE|L1	-102756	NM_001305797	14071	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding
chipseq_peak_7534	chr2	33426647	33427182	+	0	NA	intron (NM_001276332, intron 1 of 1)	intron (NM_001276332, intron 1 of 1)	4410	NM_001085507	241311	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding
chipseq_peak_5806	chr16	57834177	57834833	+	0	NA	Intergenic	Intergenic	-79768	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding
chipseq_peak_3915	chr13	96175495	96175998	+	0	NA	Intergenic	Intergenic	-43169	NM_029210	75209	Mm.40436	NM_029210		Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding
chipseq_peak_5311	chr15	72077212	72077616	+	0	NA	Intergenic	Intergenic	-43187	NM_027174	69700	Mm.322500	NM_027174		Col22a1	2310067L16Rik|C80743	collagen, type XXII, alpha 1	protein-coding
chipseq_peak_6604	chr18	16734358	16735008	+	0	NA	intron (NM_007664, intron 2 of 15)	intron (NM_007664, intron 2 of 15)	74563	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding
chipseq_peak_1625	chr10	64259742	64260152	+	0	NA	intron (NM_001164376, intron 8 of 17)	intron (NM_001164376, intron 8 of 17)	-169692	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_6455	chr17	81035275	81035832	+	0	NA	intron (NM_028138, intron 8 of 9)	intron (NM_028138, intron 8 of 9)	29532	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding
chipseq_peak_7463	chr2	12609725	12610120	+	0	NA	Intergenic	Intergenic	-190462	NM_024185	66960	Mm.34059	NM_024185	ENSMUSG00000026767	Fam188a	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958	family with sequence similarity 188, member A	protein-coding
chipseq_peak_7886	chr2	72296290	72296708	+	0	NA	intron (NM_178084, intron 1 of 9)	intron (NM_178084, intron 1 of 9)	10798	NM_001164791	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Zak	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
chipseq_peak_13906	chr9	113018808	113020367	+	0	NA	Intergenic	Intergenic	567565	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_5745	chr16	50147975	50148314	+	0	NA	Intergenic	Intergenic	-75292	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA
chipseq_peak_8836	chr3	68134967	68136453	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	70908	NM_001113421	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_3177	chr12	74995078	74996047	+	0	NA	intron (NM_172805, intron 8 of 10)	intron (NM_172805, intron 8 of 10)	181770	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding
chipseq_peak_12959	chr8	65727117	65727689	+	0	NA	intron (NM_175188, intron 1 of 7)	intron (NM_175188, intron 1 of 7)	108878	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
chipseq_peak_3754	chr13	81801057	81802339	+	0	NA	Intergenic	Intergenic	18406	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_2471	chr11	86157991	86159588	+	0	NA	intron (NM_178309, intron 6 of 19)	intron (NM_178309, intron 6 of 19)	42404	NM_178309	237911	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding
chipseq_peak_7016	chr18	78350348	78351691	+	0	NA	intron (NM_207651, intron 2 of 21)	intron (NM_207651, intron 2 of 21)	-144579	NM_001110274	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
chipseq_peak_9572	chr4	18410221	18410772	+	0	NA	Intergenic	Intergenic	557014	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_9102	chr3	116078450	116078817	+	0	NA	Intergenic	Intergenic	51055	NM_011693	22329	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding
chipseq_peak_969	chr1	159750433	159750846	+	0	NA	intron (NM_022312, intron 2 of 22)	L2c|LINE|L2	226870	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding
chipseq_peak_124	chr1	25107135	25108609	+	0	NA	intron (NM_175642, intron 25 of 30)	intron (NM_175642, intron 25 of 30)	170082	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
chipseq_peak_11978	chr6	143419980	143420365	+	0	NA	Intergenic	Intergenic	174284	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA
chipseq_peak_9407	chr3	154916894	154917868	+	0	NA	intron (NM_177066, intron 17 of 24)	intron (NM_177066, intron 17 of 24)	138026	NM_177066	435766	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding
chipseq_peak_639	chr1	97850455	97851244	+	0	NA	intron (NM_013626, intron 16 of 25)	intron (NM_013626, intron 16 of 25)	80677	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding
chipseq_peak_6030	chr16	77252286	77252709	+	0	NA	Intergenic	Intergenic	-76831	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA
chipseq_peak_11681	chr6	96376164	96376746	+	0	NA	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	-210250	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo
chipseq_peak_3827	chr13	84568287	84569663	+	0	NA	Intergenic	Intergenic	346679	NR_029419	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
chipseq_peak_8068	chr2	108033823	108034192	+	0	NA	Intergenic	Intergenic	743418	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_1956	chr10	108979517	108980051	+	0	NA	intron (NM_001252342, intron 1 of 10)	intron (NM_001252342, intron 1 of 10)	31191	NM_001252341	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding
chipseq_peak_3501	chr13	28840123	28840685	+	0	NA	intron (NR_045053, intron 2 of 8)	intron (NR_045053, intron 2 of 8)	45018	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA
chipseq_peak_2646	chr12	6153882	6155086	+	0	NA	Intergenic	Intergenic	777982	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA
chipseq_peak_11589	chr6	74282566	74283573	+	0	NA	Intergenic	Intergenic	-812048	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA
chipseq_peak_4456	chr14	79937024	79937897	+	0	NA	Intergenic	MER104|DNA|TcMar-Tc2	-62842	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_8161	chr2	129139788	129140323	+	0	NA	Intergenic	L1M5|LINE|L1	10355	NM_025395	66170	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding
chipseq_peak_14110	chrX	158571147	158571689	+	0	NA	Intergenic	Intergenic	-528221	NM_001310719	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding
chipseq_peak_10335	chr5	18472203	18472673	+	0	NA	Intergenic	Intergenic	-112025	NM_010305	14677	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding
chipseq_peak_8604	chr3	37527498	37527852	+	0	NA	intron (NM_001310473, intron 14 of 16)	intron (NM_001310473, intron 14 of 16)	-82216	NR_130162	75947	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA
chipseq_peak_381	chr1	56245671	56248674	+	0	NA	Intergenic	Intergenic	228194	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_1636	chr10	65692355	65693013	+	0	NA	Intergenic	L1M5|LINE|L1	431380	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA
chipseq_peak_2016	chr10	116402025	116404320	+	0	NA	Intergenic	Intergenic	-14949	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA
chipseq_peak_13805	chr9	100559453	100561037	+	0	NA	intron (NM_001101483, intron 1 of 1)	intron (NM_001101483, intron 1 of 1)	10840	NM_001101483	245020	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding
chipseq_peak_10640	chr5	71604169	71604614	+	0	NA	intron (NM_010251, intron 8 of 8)	intron (NM_010251, intron 8 of 8)	53917	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding
chipseq_peak_3669	chr13	59361126	59361926	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	182925	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding
chipseq_peak_870	chr1	141813082	141814518	+	0	NA	Intergenic	Intergenic	-1157398	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_5052	chr15	44438930	44439644	+	0	NA	Intergenic	Intergenic	-10980	NM_026149	67429	Mm.490404	NM_026149	ENSMUSG00000038736	Nudcd1	4921532K09Rik|AA407246|AW260430|AW556235|CML66-L|Cml66	NudC domain containing 1	protein-coding
chipseq_peak_7518	chr2	29318022	29318605	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-28497	NM_029615	68975	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding
chipseq_peak_1488	chr10	40446677	40447107	+	0	NA	intron (NM_001291817, intron 4 of 11)	intron (NM_001291817, intron 4 of 11)	97584	NM_198164	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding
chipseq_peak_9349	chr3	148934298	148936329	+	0	NA	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	19322	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
chipseq_peak_11777	chr6	103944130	103945607	+	0	NA	Intergenic	Intergenic	433992	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_5962	chr16	73772279	73772967	+	0	NA	Intergenic	Intergenic	569444	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_3957	chr13	101082257	101082530	+	0	NA	Intergenic	Intergenic	-149734	NR_046158	328324	Mm.402274	NR_046158		5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA
chipseq_peak_8158	chr2	127933403	127933938	+	0	NA	intron (NM_028765, intron 9 of 17)	intron (NM_028765, intron 9 of 17)	79042	NM_028765	74121	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding
chipseq_peak_8385	chr2	170036883	170037557	+	0	NA	Intergenic	Intergenic	33451	NR_033634	100043910	Mm.468546	NR_033632	ENSMUSG00000097065	A630075F10Rik	4831414D02|Gm4722	RIKEN cDNA A630075F10 gene	ncRNA
chipseq_peak_10425	chr5	40483627	40484462	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-839413	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_8049	chr2	106698790	106699694	+	0	NA	intron (NM_029837, intron 1 of 6)	AT_rich|Low_complexity|Low_complexity	3641	NM_029837	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding
chipseq_peak_8052	chr2	106728765	106729698	+	0	NA	intron (NM_029837, intron 2 of 6)	intron (NM_029837, intron 2 of 6)	33630	NM_029837	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding
chipseq_peak_914	chr1	148781188	148781561	+	0	NA	Intergenic	HAL1M8|LINE|L1	1141065	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
chipseq_peak_1231	chr10	5620754	5621489	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-18097	NM_001313969	22353	Mm.98916	NM_011702	ENSMUSG00000019772	Vip	-	vasoactive intestinal polypeptide	protein-coding
chipseq_peak_6425	chr17	74968762	74969163	+	0	NA	Intergenic	Intergenic	-36567	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding
chipseq_peak_13497	chr9	43070284	43071757	+	0	NA	intron (NM_027144, intron 1 of 40)	intron (NM_027144, intron 1 of 40)	34698	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding
chipseq_peak_8534	chr3	25768257	25769350	+	0	NA	intron (NM_138666, intron 5 of 7)	intron (NM_138666, intron 5 of 7)	384504	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_9859	chr4	67950257	67950610	+	0	NA	Intergenic	Intergenic	1003964	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding
chipseq_peak_4039	chr13	109568185	109570185	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	244441	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_5851	chr16	64033086	64033604	+	0	NA	Intergenic	Intergenic	-169188	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_6027	chr16	77012438	77013309	+	0	NA	Intergenic	Intergenic	-1196	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding
chipseq_peak_3210	chr12	79663013	79663475	+	0	NA	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	261489	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA
chipseq_peak_2627	chr12	4117277	4117620	+	0	NA	Intergenic	Intergenic	-15949	NM_001159536	104111	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding
chipseq_peak_13891	chr9	112405706	112406343	+	0	NA	Intergenic	Intergenic	149450	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_12174	chr7	64874813	64875201	+	0	NA	intron (NM_183087, intron 2 of 9)	intron (NM_183087, intron 2 of 9)	-1967	NM_023239	66647	Mm.19944	NM_023239		Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|mage-g1	necdin-like 2	protein-coding
chipseq_peak_9419	chr3	156039259	156039706	+	0	NA	Intergenic	Intergenic	63128	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
chipseq_peak_12916	chr8	58612768	58613030	+	0	NA	intron (NM_175032, intron 1 of 11)	intron (NM_175032, intron 1 of 11)	87897	NM_001177534	100271928	Mm.484123	NM_001177534		Gm15881	OTTMUSG00000027193	predicted gene 15881	protein-coding
chipseq_peak_13158	chr8	104766402	104766949	+	0	NA	Intergenic	Intergenic	-28562	NM_001002775	442809	Mm.444779	NM_001002775		4932416K20Rik	-	RIKEN cDNA 4932416K20 gene	protein-coding
chipseq_peak_8030	chr2	101598406	101601720	+	0	NA	intron (NM_026592, intron 2 of 6)	intron (NM_026592, intron 2 of 6)	-24685	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
chipseq_peak_6337	chr17	61691233	61691591	+	0	NA	Intergenic	Intergenic	1189905	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_12551	chr7	133543239	133543524	+	0	NA	Intergenic	Intergenic	58734	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding
chipseq_peak_9212	chr3	124820154	124821912	+	0	NA	Intergenic	Intergenic	-239942	NR_015460	384775	Mm.489851	NR_015460	ENSMUSG00000039174	1700003H04Rik	4930538K10Rik|4933400D22Rik	RIKEN cDNA 1700003H04 gene	ncRNA
chipseq_peak_6685	chr18	27542173	27542674	+	0	NA	Intergenic	Intergenic	-1017741	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA
chipseq_peak_7084	chr19	14040523	14041249	+	0	NA	Intergenic	Intergenic	121864	NM_001011850	258151	Mm.377361	NM_001011850	ENSMUSG00000062314	Olfr1505	MOR211-4P	olfactory receptor 1505	protein-coding
chipseq_peak_731	chr1	118435008	118436094	+	0	NA	intron (NM_001293300, intron 2 of 40)	intron (NM_001293300, intron 2 of 40)	23714	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA
chipseq_peak_8676	chr3	49032781	49033634	+	0	NA	Intergenic	Intergenic	-424107	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo
chipseq_peak_8524	chr3	23973288	23973726	+	0	NA	Intergenic	Intergenic	1722137	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA
chipseq_peak_7980	chr2	92688831	92689410	+	0	NA	Intergenic	Intergenic	89413	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding
chipseq_peak_14032	chrX	69382762	69383095	+	0	NA	intron (NM_008032, intron 1 of 19)	intron (NM_008032, intron 1 of 19)	22597	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding
chipseq_peak_629	chr1	96423549	96424542	+	0	NA	Intergenic	Intergenic	238528	NR_040478	75159	Mm.243854	NR_040478	ENSMUSG00000100589	4930533P14Rik	-	RIKEN cDNA 4930533P14 gene	ncRNA
chipseq_peak_8579	chr3	31306887	31308596	+	0	NA	intron (NM_172861, intron 1 of 7)	intron (NM_172861, intron 1 of 7)	2578	NM_172861	241919	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding
chipseq_peak_4506	chr14	88092954	88093343	+	0	NA	Intergenic	Intergenic	378248	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_3896	chr13	93373533	93373882	+	0	NA	intron (NM_152134, intron 5 of 8)	intron (NM_152134, intron 5 of 8)	65673	NM_152134	26556	Mm.37533	NM_011982		Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer homolog 1 (Drosophila)	protein-coding
chipseq_peak_12180	chr7	64999709	65000068	+	0	NA	intron (NM_183087, intron 1 of 9)	intron (NM_183087, intron 1 of 9)	-126848	NM_023239	66647	Mm.19944	NM_023239		Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|mage-g1	necdin-like 2	protein-coding
chipseq_peak_4347	chr14	64183284	64184536	+	0	NA	intron (NM_001253712, intron 5 of 5)	intron (NM_001253712, intron 5 of 5)	79587	NM_028525	73382	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding
chipseq_peak_1762	chr10	89391641	89392305	+	0	NA	Intergenic	Intergenic	51994	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding
chipseq_peak_4907	chr15	23334543	23335831	+	0	NA	intron (NM_001081299, intron 4 of 11)	(CAGA)n|Simple_repeat|Simple_repeat	298724	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_8031	chr2	101628791	101629484	+	0	NA	promoter-TSS (NM_026592)	promoter-TSS (NM_026592)	-151	NM_026592	68170	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding
chipseq_peak_10105	chr4	104617805	104618382	+	0	NA	intron (NR_104385, intron 4 of 15)	intron (NR_104385, intron 4 of 15)	-148224	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding
chipseq_peak_2162	chr11	18115583	18116468	+	0	NA	Intergenic	Intergenic	20039	NR_131129	327872		NR_131129		Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA
chipseq_peak_317	chr1	48342625	48343534	+	0	NA	Intergenic	Intergenic	-875954	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_4583	chr14	99733805	99734391	+	0	NA	Intergenic	Intergenic	415698	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
chipseq_peak_11403	chr6	39901964	39902396	+	0	NA	Intergenic	Intergenic	-91244	NM_001010930	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding
chipseq_peak_3992	chr13	105189405	105189809	+	0	NA	intron (NM_027934, intron 5 of 7)	intron (NM_027934, intron 5 of 7)	103407	NM_027934	71816	Mm.317015	NM_027934		Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding
chipseq_peak_2182	chr11	23735756	23736050	+	0	NA	Intergenic	RSINE1|SINE|B4	35067	NM_009044	19696	Mm.4869	NM_009044		Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding
chipseq_peak_11085	chr5	142818661	142820232	+	0	NA	Intergenic	Intergenic	-2059	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding
chipseq_peak_13801	chr9	98019890	98020128	+	0	NA	intron (NM_022319, intron 1 of 17)	intron (NM_022319, intron 1 of 17)	13158	NM_022319	64085	Mm.440903	NM_022319	ENSMUSG00000032452	Clstn2	2900042C18Rik|AI448973|CSTN2|Cs2|Cst-2|mKIAA4134	calsyntenin 2	protein-coding
chipseq_peak_5949	chr16	73104979	73106188	+	0	NA	Intergenic	Intergenic	442434	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_1891	chr10	101906380	101906904	+	0	NA	intron (NM_001205098, intron 2 of 7)	intron (NM_001205098, intron 2 of 7)	133950	NR_037211	100526516		NR_037211	ENSMUSG00000092952	Mir3059	mir-3059|mmu-mir-3059	microRNA 3059	ncRNA
chipseq_peak_7663	chr2	47295470	47295995	+	0	NA	Intergenic	Intergenic	-1518377	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_9663	chr4	29400323	29400917	+	0	NA	Intergenic	Intergenic	587475	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_11011	chr5	130792742	130793199	+	0	NA	intron (NM_021371, intron 4 of 5)	intron (NM_021371, intron 4 of 5)	344178	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding
chipseq_peak_4488	chr14	85509519	85509942	+	0	NA	Intergenic	Intergenic	-736240	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
chipseq_peak_6843	chr18	54123783	54124767	+	0	NA	Intergenic	Intergenic	262162	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
chipseq_peak_4180	chr14	20966451	20967551	+	0	NA	intron (NM_009502, intron 1 of 20)	intron (NM_009502, intron 1 of 20)	37568	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding
chipseq_peak_13219	chr8	116657489	116658019	+	0	NA	intron (NM_029441, intron 1 of 6)	L1ME1|LINE|L1	75237	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding
chipseq_peak_2026	chr10	118592779	118593225	+	0	NA	Intergenic	Intergenic	-36477	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA
chipseq_peak_10056	chr4	96799409	96800132	+	0	NA	Intergenic	Intergenic	-14610	NM_001081284	620779	Mm.439625	NM_001081284	ENSMUSG00000078639	Gm12695	OTTMUSG00000008003	predicted gene 12695	protein-coding
chipseq_peak_11241	chr6	18401144	18401402	+	0	NA	intron (NM_080285, intron 12 of 22)	intron (NM_080285, intron 12 of 22)	113552	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_12954	chr8	65288681	65289348	+	0	NA	Intergenic	Intergenic	-159477	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA
chipseq_peak_7031	chr18	79835937	79837048	+	0	NA	Intergenic	RSINE1|SINE|B4	-210403	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding
chipseq_peak_1892	chr10	101996854	101998890	+	0	NA	intron (NM_001205098, intron 2 of 7)	UCON11|Unknown|Unknown	-160986	NM_001162368	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
chipseq_peak_10988	chr5	126268614	126269048	+	0	NA	Intergenic	Intergenic	736413	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding
chipseq_peak_8900	chr3	78161997	78163058	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	982360	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_14018	chrX	65372945	65373410	+	0	NA	Intergenic	Intergenic	325533	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding
chipseq_peak_8654	chr3	45397144	45397606	+	0	NA	intron (NM_001098170, intron 4 of 4)	intron (NM_001098170, intron 4 of 4)	18977	NM_001098171	18526	Mm.242644	NM_011043	ENSMUSG00000049100	Pcdh10	6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400	protocadherin 10	protein-coding
chipseq_peak_3559	chr13	42750390	42750706	+	0	NA	intron (NM_001302635, intron 3 of 13)	intron (NM_001302635, intron 3 of 13)	40967	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_13078	chr8	90954693	90955542	+	0	NA	intron (NM_001310530, intron 1 of 37)	intron (NM_001310530, intron 1 of 37)	22868	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding
chipseq_peak_385	chr1	56282982	56283416	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	264221	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_3016	chr12	58069464	58069971	+	0	NA	Intergenic	Intergenic	-142087	NM_009216	20605	Mm.278336	NM_009216		Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding
chipseq_peak_9141	chr3	118144803	118145404	+	0	NA	Intergenic	MIRb|SINE|MIR	-276167	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_1437	chr10	32414127	32415431	+	0	NA	intron (NM_001013411, intron 1 of 6)	intron (NM_001013411, intron 1 of 6)	475136	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
chipseq_peak_8684	chr3	50003765	50004394	+	0	NA	Intergenic	Intergenic	-246763	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding
chipseq_peak_1605	chr10	58812106	58812431	+	0	NA	Intergenic	CpG	-1091	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding
chipseq_peak_3498	chr13	28720189	28722881	+	0	NA	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-10662	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA
chipseq_peak_4755	chr14	123304396	123304808	+	0	NA	intron (NM_177393, intron 28 of 43)	intron (NM_177393, intron 28 of 43)	135416	NR_045143	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
chipseq_peak_13954	chr9	121505326	121505746	+	0	NA	Intergenic	Intergenic	-9842	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding
chipseq_peak_2170	chr11	20742635	20743151	+	0	NA	Intergenic	Intergenic	-1337	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding
chipseq_peak_2865	chr12	38301527	38301833	+	0	NA	intron (NM_178681, intron 19 of 24)	MER130|Unknown|Unknown	312841	NR_045943	73867	Mm.78933	NR_045943		4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA
chipseq_peak_10736	chr5	83091478	83092623	+	0	NA	Intergenic	Intergenic	263145	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding
chipseq_peak_1143	chr1	181369131	181370665	+	0	NA	intron (NM_028408, intron 1 of 5)	intron (NM_028408, intron 1 of 5)	17270	NM_001160211	72978	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon homolog 3 (Drosophila)	protein-coding
chipseq_peak_9889	chr4	72480952	72482202	+	0	NA	Intergenic	Intergenic	280333	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA
chipseq_peak_2610	chr11	113539337	113539846	+	0	NA	intron (NM_027216, intron 3 of 9)	intron (NM_027216, intron 3 of 9)	26224	NM_027216	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding
chipseq_peak_10942	chr5	116895136	116895721	+	0	NA	Intergenic	Intergenic	220565	NM_178622	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding
chipseq_peak_10690	chr5	77647562	77647900	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	182243	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
chipseq_peak_7191	chr19	28374002	28375228	+	0	NA	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-303609	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_10617	chr5	67904684	67905266	+	0	NA	Intergenic	Intergenic	-36694	NM_001256184	330097	Mm.78496	NM_001256184	ENSMUSG00000094719	Gm5108	EG330097	predicted gene 5108	protein-coding
chipseq_peak_4632	chr14	106940293	106940605	+	0	NA	Intergenic	Intergenic	-453929	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
chipseq_peak_1355	chr10	25552856	25553185	+	0	NA	Intergenic	Intergenic	-16748	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding
chipseq_peak_573	chr1	82970596	82971631	+	0	NA	Intergenic	Intergenic	67335	NM_030556	80721	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding
chipseq_peak_2658	chr12	7050836	7051328	+	0	NA	Intergenic	Intergenic	329248	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_767	chr1	126469096	126470538	+	0	NA	intron (NM_176957, intron 3 of 12)	intron (NM_176957, intron 3 of 12)	23110	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding
chipseq_peak_9025	chr3	96497777	96498139	+	0	NA	Intergenic	Intergenic	-27227	NM_027126	69585	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile) (human homolog)	protein-coding
chipseq_peak_3651	chr13	57845877	57847149	+	0	NA	intron (NM_001166464, intron 2 of 10)	intron (NM_001166464, intron 2 of 10)	61819	NM_001166464	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding
chipseq_peak_842	chr1	138328045	138328763	+	0	NA	Intergenic	Intergenic	54666	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding
chipseq_peak_5352	chr15	83897501	83897858	+	0	NA	intron (NM_029946, intron 24 of 31)	intron (NM_029946, intron 24 of 31)	21694	NM_001161629	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding
chipseq_peak_8333	chr2	156673226	156673768	+	0	NA	intron (NM_001277187, intron 2 of 11)	UCON28a|Unknown|Unknown	47412	NR_040505	74846	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA
chipseq_peak_9506	chr4	12701456	12701900	+	0	NA	Intergenic	Intergenic	-205159	NM_173746	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_4149	chr14	12801027	12801594	+	0	NA	intron (NM_012061, intron 1 of 28)	RSINE1|SINE|B4	21769	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding
chipseq_peak_5018	chr15	41059080	41059866	+	0	NA	intron (NM_011766, intron 5 of 7)	intron (NM_011766, intron 5 of 7)	-388009	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
chipseq_peak_13840	chr9	104704421	104704801	+	0	NA	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	134823	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding
chipseq_peak_383	chr1	56252221	56253937	+	0	NA	Intergenic	Intergenic	234101	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_1416	chr10	29902578	29903071	+	0	NA	Intergenic	Intergenic	297716	NM_001109747	66311	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding
chipseq_peak_7985	chr2	94336112	94336848	+	0	NA	intron (NM_183106, intron 17 of 24)	intron (NM_183106, intron 17 of 24)	70209	NM_183106	74569	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding
chipseq_peak_8280	chr2	142487574	142488129	+	0	NA	Intergenic	L1M4|LINE|L1	413613	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_12574	chr7	144210573	144211220	+	0	NA	intron (NM_001113373, intron 4 of 15)	intron (NM_001113373, intron 4 of 15)	35376	NM_001113373	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding
chipseq_peak_3056	chr12	62449963	62452343	+	0	NA	Intergenic	Intergenic	-236634	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA
chipseq_peak_127	chr1	25165193	25167129	+	0	NA	intron (NM_175642, intron 19 of 30)	intron (NM_175642, intron 19 of 30)	111793	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
chipseq_peak_2976	chr12	51095368	51096383	+	0	NA	Intergenic	Intergenic	90719	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
chipseq_peak_2175	chr11	21055615	21055902	+	0	NA	Intergenic	Intergenic	-35566	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding
chipseq_peak_12799	chr8	44745042	44745340	+	0	NA	Intergenic	Intergenic	-205017	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chipseq_peak_9048	chr3	104095781	104096486	+	0	NA	intron (NM_001159354, intron 2 of 20)	MLT1H2|LTR|ERVL-MaLR	124273	NM_133853	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
chipseq_peak_3679	chr13	63525218	63525496	+	0	NA	intron (NM_008957, intron 16 of 22)	intron (NM_008957, intron 16 of 22)	40163	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched homolog 1	protein-coding
chipseq_peak_6795	chr18	45709117	45709715	+	0	NA	intron (NR_040342, intron 3 of 3)	intron (NR_040342, intron 3 of 3)	149262	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding
chipseq_peak_6209	chr17	27839674	27840073	+	0	NA	promoter-TSS (NM_011432)	promoter-TSS (NM_011432)	-214	NM_011432	20630	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding
chipseq_peak_7664	chr2	47298651	47298934	+	0	NA	Intergenic	Intergenic	-1515317	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_12181	chr7	65964442	65964937	+	0	NA	intron (NM_001291184, intron 9 of 20)	intron (NM_001291184, intron 9 of 20)	-95647	NM_021336	68981	Mm.22362	NM_021336	ENSMUSG00000030512	Snrpa1	1500015N06Rik	small nuclear ribonucleoprotein polypeptide A'	protein-coding
chipseq_peak_4698	chr14	115633125	115633987	+	0	NA	intron (NM_175500, intron 6 of 7)	intron (NM_175500, intron 6 of 7)	-224004	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA
chipseq_peak_5694	chr16	44497183	44497434	+	0	NA	intron (NM_172506, intron 7 of 18)	MTE-int|LTR|ERVL-MaLR	60821	NR_037242	100526478		NR_037242	ENSMUSG00000093046	Mir3081	mir-3081|mmu-mir-3081	microRNA 3081	ncRNA
chipseq_peak_8454	chr3	10783862	10784343	+	0	NA	Intergenic	Intergenic	-343972	NM_001127191	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding
chipseq_peak_5224	chr15	64544345	64544715	+	0	NA	Intergenic	MIRb|SINE|MIR	-161611	NM_001276461	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding
chipseq_peak_14074	chrX	132798329	132798743	+	0	NA	Intergenic	Lx8|LINE|L1	890457	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding
chipseq_peak_7562	chr2	38192716	38193181	+	0	NA	intron (NM_146122, intron 2 of 21)	L1ME3A|LINE|L1	94436	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding
chipseq_peak_13961	chr9	122765339	122765691	+	0	NA	intron (NM_001199736, intron 4 of 19)	intron (NM_001199736, intron 4 of 19)	18169	NM_001199736	671232	Mm.296421	NM_001199736	ENSMUSG00000094985	Topaz1	Gm9524	testis and ovary specific PAZ domain containing 1	protein-coding
chipseq_peak_13263	chr8	127741894	127742362	+	0	NA	Intergenic	Intergenic	442476	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_13046	chr8	86028620	86029371	+	0	NA	intron (NM_199446, intron 26 of 31)	intron (NM_199446, intron 26 of 31)	187993	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding
chipseq_peak_4267	chr14	39038976	39039512	+	0	NA	intron (NM_008734, intron 1 of 9)	intron (NM_008734, intron 1 of 9)	140942	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
chipseq_peak_7920	chr2	77941674	77941942	+	0	NA	intron (NM_030560, intron 1 of 20)	intron (NM_030560, intron 1 of 20)	4548	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
chipseq_peak_4291	chr14	49311256	49311802	+	0	NA	intron (NM_029238, intron 4 of 7)	intron (NM_029238, intron 4 of 7)	-66101	NM_025956	67082	Mm.87439	NM_025956	ENSMUSG00000021850	1700011H14Rik	-	RIKEN cDNA 1700011H14 gene	protein-coding
chipseq_peak_11188	chr6	13184120	13184686	+	0	NA	Intergenic	Intergenic	40562	NM_001013757	232585	Mm.389082	NM_001013757	ENSMUSG00000079679	Vwde	Gm467	von Willebrand factor D and EGF domains	protein-coding
chipseq_peak_8797	chr3	62527283	62527591	+	0	NA	Intergenic	Intergenic	-20449	NM_028136	72162	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding
chipseq_peak_11571	chr6	64588546	64589155	+	0	NA	intron (NM_008167, intron 14 of 15)	intron (NM_008167, intron 14 of 15)	-140296	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
chipseq_peak_9334	chr3	146326247	146328132	+	0	NA	Intergenic	Intergenic	51755	NR_033542	100038607	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	ENSMUSG00000074175	predicted gene 10636	ncRNA
chipseq_peak_2023	chr10	117063967	117064601	+	0	NA	promoter-TSS (NM_007636)	promoter-TSS (NM_007636)	-470	NM_007636	12461	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding
chipseq_peak_12956	chr8	65415862	65416295	+	0	NA	Intergenic	MLT2D|LTR|ERVL	-201962	NM_001293784	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
chipseq_peak_2327	chr11	42927116	42927610	+	0	NA	Intergenic	Intergenic	-222514	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding
chipseq_peak_6500	chr17	88343332	88343758	+	0	NA	Intergenic	Intergenic	-97167	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding
chipseq_peak_3576	chr13	44946991	44947489	+	0	NA	intron (NM_025772, intron 7 of 9)	intron (NM_025772, intron 7 of 9)	54856	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding
chipseq_peak_4194	chr14	21616366	21616893	+	0	NA	intron (NM_001205241, intron 3 of 16)	intron (NM_001205241, intron 3 of 16)	97947	NM_001013826	435391	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding
chipseq_peak_10358	chr5	21640858	21641229	+	0	NA	intron (NM_177076, intron 1 of 19)	intron (NM_177076, intron 1 of 19)	4562	NM_177076	320118	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding
chipseq_peak_8818	chr3	66236473	66236756	+	0	NA	intron (NM_145820, intron 4 of 13)	intron (NM_145820, intron 4 of 13)	16727	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding
chipseq_peak_4203	chr14	24565262	24565528	+	0	NA	Intergenic	Intergenic	74714	NM_207634	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding
chipseq_peak_5137	chr15	53397707	53398154	+	0	NA	Intergenic	Intergenic	-51747	NM_010162	14042	Mm.309395	NM_010162		Ext1	AA409028	exostoses (multiple) 1	protein-coding
chipseq_peak_3213	chr12	81278027	81278644	+	0	NA	intron (NM_080440, intron 2 of 7)	L2|LINE|L2	54845	NM_001167920	110893	Mm.443748	NM_080440	ENSMUSG00000079055	Slc8a3	AW742262|Ncx3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding
chipseq_peak_13391	chr9	28038962	28039501	+	0	NA	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	247962	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_8717	chr3	53669697	53670705	+	0	NA	Intergenic	Intergenic	-12846	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding
chipseq_peak_4311	chr14	55417451	55417971	+	0	NA	Intergenic	Intergenic	-61047	NM_030686	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding
chipseq_peak_13876	chr9	110224219	110224753	+	0	NA	intron (NM_009211, intron 26 of 27)	L1ME3|LINE|L1	-19297	NM_013884	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding
chipseq_peak_2808	chr12	32207102	32208230	+	0	NA	intron (NM_001146200, intron 1 of 10)	intron (NM_001146200, intron 1 of 10)	672	NM_001146201	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding
chipseq_peak_653	chr1	98392056	98392398	+	0	NA	Intergenic	Intergenic	-28897	NM_001164233	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding
chipseq_peak_7955	chr2	82697819	82699588	+	0	NA	Intergenic	Intergenic	645045	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding
chipseq_peak_5637	chr16	40167535	40169154	+	0	NA	Intergenic	Intergenic	1265999	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_6840	chr18	54107174	54107527	+	0	NA	Intergenic	(TTA)n|Simple_repeat|Simple_repeat	245237	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
chipseq_peak_2679	chr12	9952207	9953125	+	0	NA	Intergenic	Intergenic	378224	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding
chipseq_peak_11514	chr6	54763552	54764350	+	0	NA	Intergenic	MLTR18D_MM|LTR|ERVK	-52965	NM_199143	387524	Mm.286149	NM_199143		Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding
chipseq_peak_1053	chr1	171715330	171715906	+	0	NA	Intergenic	RLTR22_Mus|LTR|ERVK	33563	NM_007649	12506	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding
chipseq_peak_11642	chr6	86068839	86069511	+	0	NA	intron (NM_001271858, intron 1 of 15)	intron (NM_001271858, intron 1 of 15)	-8873	NM_001271861	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding
chipseq_peak_8094	chr2	113104510	113104995	+	0	NA	Intergenic	Intergenic	-74421	NM_177652	20192	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding
chipseq_peak_13628	chr9	61269391	61269932	+	0	NA	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	24148	NR_045334	622037	Mm.126243	NR_045334		B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA
chipseq_peak_8108	chr2	114340620	114341770	+	0	NA	Intergenic	Intergenic	-139763	NM_175466	228491	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding
chipseq_peak_7546	chr2	35875511	35876129	+	0	NA	intron (NM_029774, intron 6 of 9)	intron (NM_029774, intron 6 of 9)	56630	NR_040618	77665	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA
chipseq_peak_3970	chr13	102333697	102334694	+	0	NA	Intergenic	Intergenic	-359363	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding
chipseq_peak_11030	chr5	132008565	132009158	+	0	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	128592	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_12416	chr7	101236648	101237145	+	0	NA	intron (NM_199012, intron 9 of 20)	intron (NM_199012, intron 9 of 20)	65192	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding
chipseq_peak_12113	chr7	53109424	53109859	+	0	NA	Intergenic	Intergenic	782248	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
chipseq_peak_11140	chr6	5930052	5930491	+	0	NA	intron (NM_010063, intron 10 of 16)	intron (NM_010063, intron 10 of 16)	47122	NR_040255	72249	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA
chipseq_peak_14066	chrX	117793999	117794379	+	0	NA	Intergenic	Intergenic	-633038	NM_001142750	100039551	Mm.272850	NM_001142750	ENSMUSG00000100194	Tgif2lx2	-	TGFB-induced factor homeobox 2-like, X-linked 2	protein-coding
chipseq_peak_6644	chr18	22407730	22409547	+	0	NA	intron (NM_001167777, intron 3 of 12)	intron (NM_001167777, intron 3 of 12)	63549	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3 (Drosophila)	protein-coding
chipseq_peak_9339	chr3	146401748	146402126	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-2705	NM_001253770	99167	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X breakpoint 2 interacting protein	protein-coding
chipseq_peak_1117	chr1	177462502	177463487	+	0	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	17173	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_13245	chr8	124315387	124315657	+	0	NA	intron (NM_139272, intron 3 of 15)	intron (NM_139272, intron 3 of 15)	84128	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
chipseq_peak_9643	chr4	26762835	26764388	+	0	NA	Intergenic	Intergenic	-58162	NR_040656	75360	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA
chipseq_peak_4303	chr14	54059864	54060235	+	0	NA	Intergenic	Intergenic	193880	NM_010015	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding
chipseq_peak_8147	chr2	123696263	123696760	+	0	NA	Intergenic	Intergenic	-393458	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
chipseq_peak_12601	chr8	7760239	7761422	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	899943	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_7629	chr2	44356200	44357211	+	0	NA	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-291381	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_5692	chr16	44273858	44274818	+	0	NA	intron (NM_198034, intron 9 of 24)	L1MB7|LINE|L1	58500	NM_001159419	320007	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding
chipseq_peak_592	chr1	88320415	88320891	+	0	NA	intron (NM_134252, intron 3 of 26)	intron (NM_134252, intron 3 of 26)	13941	NM_134252	171382	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding
chipseq_peak_12875	chr8	54836170	54838610	+	0	NA	intron (NM_001253754, intron 1 of 6)	intron (NM_001253754, intron 1 of 6)	57956	NM_001253754	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_10508	chr5	54154720	54155674	+	0	NA	Intergenic	Intergenic	156674	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding
chipseq_peak_6252	chr17	44520355	44521369	+	0	NA	intron (NR_073425, intron 5 of 5)	intron (NR_073425, intron 5 of 5)	215314	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding
chipseq_peak_5059	chr15	44703864	44704776	+	0	NA	intron (NM_001285840, intron 3 of 6)	intron (NM_001285840, intron 3 of 6)	2168	NM_001285843	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_5465	chr16	5430967	5431519	+	0	NA	Intergenic	Intergenic	-175287	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
chipseq_peak_11882	chr6	117414568	117415248	+	0	NA	Intergenic	Intergenic	246373	NM_001012477	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding
chipseq_peak_1283	chr10	14084915	14086002	+	0	NA	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119079	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chipseq_peak_5095	chr15	48699601	48700097	+	0	NA	intron (NM_001081391, intron 1 of 70)	intron (NM_001081391, intron 1 of 70)	92140	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
chipseq_peak_13797	chr9	97719610	97720051	+	0	NA	intron (NM_022319, intron 2 of 17)	intron (NM_022319, intron 2 of 17)	-283590	NR_110443	66737	Mm.445908	NR_110443	ENSMUSG00000090255	4921534H16Rik	-	RIKEN cDNA 4921534H16 gene	ncRNA
chipseq_peak_1160	chr1	186066211	186067562	+	0	NA	Intergenic	Intergenic	50424	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding
chipseq_peak_8831	chr3	67974308	67974964	+	0	NA	intron (NM_001113419, intron 1 of 10)	intron (NM_001113419, intron 1 of 10)	82416	NM_001113419	100505386	Mm.331064	NM_001113419	ENSMUSG00000102422	Gm21949	Iqcj-schip1|Schip-1-iqcj|Schip1	predicted gene, 21949	protein-coding
chipseq_peak_7551	chr2	37576743	37577182	+	0	NA	3' UTR (NM_009261, exon 17 of 17)	3' UTR (NM_009261, exon 17 of 17)	60336	NM_177383	338346	Mm.445325	NM_177383		Gpr21	C230004C13Rik	G protein-coupled receptor 21	protein-coding
chipseq_peak_8744	chr3	55044445	55045087	+	0	NA	TTS (NM_007628)	TTS (NM_007628)	10289	NM_007628	12427	Mm.4815	NM_007628	ENSMUSG00000027793	Ccna1	-	cyclin A1	protein-coding
chipseq_peak_2918	chr12	44993402	44993752	+	0	NA	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	80906	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
chipseq_peak_563	chr1	81316607	81316871	+	0	NA	Intergenic	Intergenic	239422	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding
chipseq_peak_7464	chr2	12709189	12710339	+	0	NA	Intergenic	Intergenic	-214277	NM_001305437	19212	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding
chipseq_peak_9338	chr3	146396480	146396875	+	0	NA	Intergenic	Intergenic	-7965	NM_001253770	99167	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X breakpoint 2 interacting protein	protein-coding
chipseq_peak_6062	chr16	80571438	80571864	+	0	NA	Intergenic	Intergenic	-629046	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
chipseq_peak_4405	chr14	74259424	74260302	+	0	NA	Intergenic	Intergenic	-95664	NR_046059	74425	Mm.399498	NR_046059		4933402J15Rik	-	RIKEN cDNA 4933402J15 gene	ncRNA
chipseq_peak_12401	chr7	97387008	97387365	+	0	NA	intron (NM_199035, intron 9 of 12)	intron (NM_199035, intron 9 of 12)	-12817	NM_024220	68197	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding
chipseq_peak_1269	chr10	11278073	11278681	+	0	NA	Intergenic	Intergenic	-2953	NM_027968	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding
chipseq_peak_5959	chr16	73498537	73498998	+	0	NA	Intergenic	Intergenic	835618	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_5387	chr15	92265018	92265635	+	0	NA	intron (NM_001159648, intron 14 of 23)	intron (NM_001159648, intron 14 of 23)	103969	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding
chipseq_peak_12368	chr7	93383906	93384405	+	0	NA	Intergenic	Intergenic	304276	NM_021427	58238	Mm.113787	NM_021427		Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding
chipseq_peak_4444	chr14	78535976	78537174	+	0	NA	intron (NM_001164503, intron 1 of 11)	CpG	285	NM_001164503	219181	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding
chipseq_peak_12427	chr7	109328747	109329352	+	0	NA	intron (NM_054103, intron 8 of 13)	intron (NM_054103, intron 8 of 13)	110004	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding
chipseq_peak_11943	chr6	138004082	138004536	+	0	NA	intron (NM_177787, intron 7 of 8)	intron (NM_177787, intron 7 of 8)	75607	NM_177787	277898	Mm.269823	NM_177787	ENSMUSG00000044378	Slc15a5	9830102E05Rik	solute carrier family 15, member 5	protein-coding
chipseq_peak_4902	chr15	22966305	22968355	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-69133	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_3482	chr13	23585973	23586553	+	0	NA	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	-293	NM_001290530	319179	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding
chipseq_peak_4891	chr15	21490402	21493712	+	0	NA	intron (NM_001008420, intron 4 of 11)	intron (NM_001008420, intron 4 of 11)	380605	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
chipseq_peak_8379	chr2	166417585	166417980	+	0	NA	Intergenic	Intergenic	-29669	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA
chipseq_peak_13036	chr8	82967774	82968379	+	0	NA	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	104720	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding
chipseq_peak_2715	chr12	14383288	14384095	+	0	NA	Intergenic	Intergenic	122157	NR_045003	791361	Mm.217963	NR_045003		Gm16497	ENSMUSG00000066623	predicted gene 16497	ncRNA
chipseq_peak_10674	chr5	74327165	74327464	+	0	NA	intron (NM_001286437, intron 5 of 7)	intron (NM_001286437, intron 5 of 7)	131988	NM_026878	68939	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding
chipseq_peak_6362	chr17	64241914	64242286	+	0	NA	Intergenic	Intergenic	89783	NM_001025309	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding
chipseq_peak_3140	chr12	71956919	71957857	+	0	NA	intron (NM_001286452, intron 15 of 24)	intron (NM_001286452, intron 15 of 24)	67845	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding
chipseq_peak_11766	chr6	103512169	103512969	+	0	NA	intron (NM_007697, intron 1 of 26)	MIR|SINE|MIR	1693	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_4145	chr14	12507058	12507626	+	0	NA	intron (NM_012061, intron 12 of 28)	intron (NM_012061, intron 12 of 28)	-161477	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding
chipseq_peak_7231	chr19	36312426	36312786	+	0	NA	Intergenic	Intergenic	-66461	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding
chipseq_peak_6491	chr17	87054933	87055363	+	0	NA	Intergenic	Intergenic	29587	NM_019936	56724	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding
chipseq_peak_1396	chr10	28067867	28068634	+	0	NA	Intergenic	Intergenic	-6570	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding
chipseq_peak_8839	chr3	68250643	68252492	+	0	NA	intron (NM_001113420, intron 1 of 6)	L1M5|LINE|L1	186765	NM_001113421	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_2435	chr11	78640910	78641455	+	0	NA	intron (NM_008702, intron 1 of 10)	intron (NM_008702, intron 1 of 10)	56243	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding
chipseq_peak_4184	chr14	21251450	21254402	+	0	NA	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	176774	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding
chipseq_peak_13936	chr9	116803391	116803653	+	0	NA	intron (NM_001172122, intron 6 of 13)	intron (NM_001172122, intron 6 of 13)	448961	NM_178660	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
chipseq_peak_9650	chr4	27843459	27843952	+	0	NA	Intergenic	Intergenic	-969426	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_2391	chr11	67844440	67845746	+	0	NA	Intergenic	Intergenic	46822	NM_001013013	68460	Mm.22167	NM_001013013	ENSMUSG00000033044	Dhrs7c	1110001P11Rik|AI120487|SRP-35	dehydrogenase/reductase (SDR family) member 7C	protein-coding
chipseq_peak_2735	chr12	17267256	17267630	+	0	NA	intron (NM_027959, intron 1 of 12)	intron (NM_027959, intron 1 of 12)	848	NM_027959	71853	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding
chipseq_peak_10447	chr5	44537476	44539588	+	0	NA	intron (NM_001077398, intron 3 of 8)	intron (NM_001077398, intron 3 of 8)	261214	NM_001077398	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding
chipseq_peak_5422	chr15	95068783	95069134	+	0	NA	intron (NM_178789, intron 6 of 7)	intron (NM_178789, intron 6 of 7)	80360	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_3801	chr13	83480183	83482347	+	0	NA	Intergenic	Intergenic	-22769	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_9999	chr4	85762586	85763688	+	0	NA	Intergenic	LTR72_RN|LTR|ERV1	-290778	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding
chipseq_peak_12381	chr7	95352288	95352656	+	0	NA	Intergenic	Charlie2b|DNA|hAT-Charlie	-818772	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
chipseq_peak_8591	chr3	34618967	34619393	+	0	NA	intron (NR_015580, intron 2 of 4)	intron (NR_015580, intron 2 of 4)	-19284	NR_035433	100316679		NR_035433	ENSMUSG00000104797	Mir1897	Mirn1897|mmu-mir-1897	microRNA 1897	ncRNA
chipseq_peak_12734	chr8	35725136	35725721	+	0	NA	Intergenic	Intergenic	101131	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding
chipseq_peak_4928	chr15	26579614	26580377	+	0	NA	intron (NM_176959, intron 2 of 3)	L3|LINE|CR1	270947	NM_001310774	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding
chipseq_peak_6778	chr18	42823515	42823998	+	0	NA	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	75750	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
chipseq_peak_3070	chr12	64881346	64881931	+	0	NA	Intergenic	Intergenic	-36273	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding
chipseq_peak_14060	chrX	106809776	106810044	+	0	NA	Intergenic	Intergenic	30733	NM_199468	213436	Mm.85581	NM_199468	ENSMUSG00000047686	Zcchc5	D430021I08Rik|Gm375|Mar3|Mart3|ZHC5	zinc finger, CCHC domain containing 5	protein-coding
chipseq_peak_6403	chr17	70127831	70128561	+	0	NA	Intergenic	Intergenic	-296596	NM_027712	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding
chipseq_peak_13807	chr9	101072634	101073200	+	0	NA	Intergenic	Intergenic	-1845	NM_001100451	77853	Mm.326206	NM_001100451		Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding
chipseq_peak_11930	chr6	137254281	137254967	+	0	NA	intron (NM_001164401, intron 1 of 25)	intron (NM_001164401, intron 1 of 25)	2325	NM_001164401	19277	Mm.186361	NM_011216		Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
chipseq_peak_9175	chr3	121865679	121866013	+	0	NA	Intergenic	Intergenic	-50631	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding
chipseq_peak_13098	chr8	96744766	96745340	+	0	NA	Intergenic	Intergenic	-199080	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_6836	chr18	53935821	53936817	+	0	NA	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	74206	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
chipseq_peak_1543	chr10	49568908	49569347	+	0	NA	intron (NM_010349, intron 4 of 17)	intron (NM_010349, intron 4 of 17)	219627	NM_001111268	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding
chipseq_peak_2827	chr12	34398651	34399143	+	0	NA	intron (NM_024124, intron 8 of 11)	intron (NM_024124, intron 8 of 11)	129992	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
chipseq_peak_11303	chr6	26743663	26744220	+	0	NA	Intergenic	Intergenic	812515	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA
chipseq_peak_11211	chr6	14150471	14150902	+	0	NA	Intergenic	Intergenic	279117	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
chipseq_peak_346	chr1	54118664	54119961	+	0	NA	intron (NM_001001883, intron 1 of 28)	intron (NM_001001883, intron 1 of 28)	75722	NM_172655	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
chipseq_peak_11260	chr6	20076993	20078841	+	0	NA	Intergenic	Intergenic	522575	NR_105789	102465192		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA
chipseq_peak_1567	chr10	52925715	52927008	+	0	NA	intron (NM_178675, intron 1 of 7)	intron (NM_178675, intron 1 of 7)	235860	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
chipseq_peak_129	chr1	25503779	25504805	+	0	NA	intron (NM_175642, intron 9 of 30)	intron (NM_175642, intron 9 of 30)	-226338	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
chipseq_peak_1620	chr10	63985626	63985984	+	0	NA	intron (NM_178678, intron 2 of 2)	intron (NM_178678, intron 2 of 2)	104450	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_2982	chr12	51274480	51276536	+	0	NA	Intergenic	Intergenic	-72722	NM_001167964	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding
chipseq_peak_11253	chr6	18680430	18681297	+	0	NA	Intergenic	Intergenic	-166038	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_12231	chr7	75117986	75118745	+	0	NA	intron (NM_153579, intron 12 of 12)	intron (NM_153579, intron 12 of 12)	88154	NR_131122	75205	Mm.399304	NR_131122		4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA
chipseq_peak_11505	chr6	53971740	53972668	+	0	NA	intron (NM_027749, intron 2 of 12)	intron (NM_027749, intron 2 of 12)	6469	NM_001289714	71287	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding
chipseq_peak_303	chr1	46985784	46986521	+	0	NA	Intergenic	Intergenic	-132643	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding
chipseq_peak_10535	chr5	57714017	57714759	+	0	NA	intron (NR_015588, intron 1 of 4)	intron (NR_015588, intron 1 of 4)	3531	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_3567	chr13	43565380	43565750	+	0	NA	Intergenic	Intergenic	-5374	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding
chipseq_peak_8696	chr3	51488898	51489340	+	0	NA	intron (NM_016858, intron 1 of 1)	intron (NM_016858, intron 1 of 1)	5153	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding
chipseq_peak_9984	chr4	82945943	82947146	+	0	NA	intron (NM_177863, intron 23 of 35)	intron (NM_177863, intron 23 of 35)	-61393	NM_009887	12622	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1 homolog (Xenopus laevis)	protein-coding
chipseq_peak_9215	chr3	126722884	126723550	+	0	NA	intron (NM_001293665, intron 3 of 19)	intron (NM_001293665, intron 3 of 19)	126266	NM_001293666	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
chipseq_peak_1113	chr1	177435909	177436567	+	0	NA	Intergenic	Intergenic	-8423	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_4254	chr14	37238738	37239228	+	0	NA	Intergenic	Intergenic	-103661	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
chipseq_peak_2890	chr12	41465012	41465380	+	0	NA	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	20861	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_10862	chr5	103370528	103370860	+	0	NA	Intergenic	Intergenic	-54498	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding
chipseq_peak_9809	chr4	53658092	53658375	+	0	NA	intron (NM_001195284, intron 5 of 12)	intron (NM_001195284, intron 5 of 12)	26762	NM_001195284	319636	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl|OTTMUSG00000007002	fibronectin type III and SPRY domain containing 1-like	protein-coding
chipseq_peak_9099	chr3	115489683	115490207	+	0	NA	Intergenic	Intergenic	225110	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding
chipseq_peak_14088	chrX	139729846	139730197	+	0	NA	intron (NM_001081499, intron 10 of 20)	L1M4|LINE|L1	45025	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding
chipseq_peak_1128	chr1	179184644	179185030	+	0	NA	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	333166	NM_027188	69726	Mm.222338	NM_027188		Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding
chipseq_peak_12314	chr7	90845722	90846117	+	0	NA	Intergenic	Intergenic	-244867	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_4812	chr15	13295925	13297238	+	0	NA	Intergenic	Intergenic	-122906	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_7367	chr2	5170912	5171428	+	0	NA	intron (NM_028804, intron 2 of 2)	intron (NM_028804, intron 2 of 2)	33394	NM_028804	74186	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding
chipseq_peak_7811	chr2	62502454	62503419	+	0	NA	intron (NM_007986, intron 23 of 25)	intron (NM_007986, intron 23 of 25)	-19283	NM_008100	14526	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding
chipseq_peak_3266	chr12	92305911	92306601	+	0	NA	Intergenic	Intergenic	-457099	NM_001039089	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chipseq_peak_3966	chr13	101490991	101492111	+	0	NA	Intergenic	Intergenic	-93971	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA
chipseq_peak_12387	chr7	96474447	96475337	+	0	NA	intron (NM_001310760, intron 3 of 32)	LTR79|LTR|ERVL	-132928	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA
chipseq_peak_2456	chr11	81593074	81594104	+	0	NA	intron (NM_001034013, intron 1 of 9)	MamRep434|DNA|TcMar-Tigger	-20050	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding
chipseq_peak_7380	chr2	6740094	6742089	+	0	NA	intron (NM_001110229, intron 2 of 14)	intron (NM_001110229, intron 2 of 14)	-19429	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_4140	chr14	11640438	11640717	+	0	NA	intron (NM_008981, intron 1 of 29)	intron (NM_008981, intron 1 of 29)	87024	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding
chipseq_peak_10038	chr4	91589132	91590317	+	0	NA	Intergenic	Intergenic	-189740	NM_207685	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding
chipseq_peak_11394	chr6	37483751	37485943	+	0	NA	Intergenic	Intergenic	-42699	NM_178661	208647	Mm.169929	NM_178661		Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding
chipseq_peak_14092	chrX	142760362	142760814	+	0	NA	intron (NM_001199357, intron 2 of 6)	L1M6|LINE|L1	21588	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA
chipseq_peak_8230	chr2	138551469	138552214	+	0	NA	Intergenic	MER57C2|LTR|ERV1	-268088	NR_035477	100316816		NR_035477	ENSMUSG00000088983	Mir1952	mmu-mir-1952	microRNA 1952	ncRNA
chipseq_peak_13357	chr9	24411138	24411874	+	0	NA	TTS (NM_172920)	TTS (NM_172920)	91634	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding
chipseq_peak_6226	chr17	30467679	30468394	+	0	NA	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	-71856	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo
chipseq_peak_533	chr1	76420483	76421015	+	0	NA	Intergenic	Intergenic	-68384	NR_038013	620079	Mm.378379	NR_038012	ENSMUSG00000100553	Gm17751	-	predicted gene, 17751	ncRNA
chipseq_peak_7495	chr2	20216163	20216638	+	0	NA	Intergenic	L1ME2|LINE|L1	-73513	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
chipseq_peak_11331	chr6	32780497	32781006	+	0	NA	Intergenic	Intergenic	-192559	NM_175750	243743	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding
chipseq_peak_6258	chr17	44842226	44843080	+	0	NA	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	-27856	NR_073392	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding
chipseq_peak_6553	chr17	93808590	93808864	+	0	NA	Intergenic	Intergenic	609559	NM_001315504	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
chipseq_peak_5648	chr16	40858954	40859615	+	0	NA	Intergenic	Intergenic	-674058	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_7384	chr2	6997796	6998521	+	0	NA	intron (NM_001110231, intron 3 of 15)	intron (NM_001110231, intron 3 of 15)	-69436	NR_027890	68144	Mm.483289	NM_026575		5031426D15Rik	-	RIKEN cDNA 5031426D15 gene	ncRNA
chipseq_peak_11234	chr6	17211387	17211999	+	0	NA	Intergenic	Intergenic	13586	NR_102304	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA
chipseq_peak_9921	chr4	77025865	77026349	+	0	NA	intron (NM_011211, intron 7 of 39)	intron (NM_011211, intron 7 of 39)	1185788	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_7939	chr2	79357788	79358284	+	0	NA	intron (NM_001048176, intron 4 of 12)	intron (NM_001048176, intron 4 of 12)	70952	NM_001048176	228094	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding
chipseq_peak_11400	chr6	38874050	38874858	+	0	NA	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	1736	NM_010433	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding
chipseq_peak_12431	chr7	111028300	111028664	+	0	NA	promoter-TSS (NM_009431)	promoter-TSS (NM_009431)	-469	NM_009431	22083	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	protein-coding
chipseq_peak_12255	chr7	77910638	77911001	+	0	NA	Intergenic	L1MC5|LINE|L1	667019	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
chipseq_peak_7447	chr2	8644461	8645707	+	0	NA	Intergenic	Intergenic	-544431	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_3903	chr13	94178602	94178878	+	0	NA	intron (NM_172589, intron 3 of 3)	intron (NM_172589, intron 3 of 3)	106541	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding
chipseq_peak_656	chr1	99124715	99125195	+	0	NA	Intergenic	Intergenic	-647810	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding
chipseq_peak_1085	chr1	176951387	176953954	+	0	NA	intron (NM_029756, intron 15 of 17)	intron (NM_029756, intron 15 of 17)	-116537	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_12302	chr7	89576246	89576671	+	0	NA	Intergenic	Intergenic	-56360	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
chipseq_peak_843	chr1	138496809	138497555	+	0	NA	intron (NM_001311148, intron 7 of 7)	intron (NM_001311148, intron 7 of 7)	122575	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding
chipseq_peak_389	chr1	56336145	56337258	+	0	NA	Intergenic	Intergenic	300750	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_9798	chr4	52359806	52360388	+	0	NA	Intergenic	Intergenic	78867	NR_045175	72648	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA
chipseq_peak_8095	chr2	113222749	113223085	+	0	NA	intron (NR_035479, intron 2 of 3)	intron (NR_035479, intron 2 of 3)	2730	NR_035479	100316776		NR_035479	ENSMUSG00000093336	Mir1954	mmu-mir-1954	microRNA 1954	ncRNA
chipseq_peak_12127	chr7	54734077	54734447	+	0	NA	Intergenic	Intergenic	-100983	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_5554	chr16	25833655	25833889	+	0	NA	intron (NM_001127259, intron 4 of 13)	intron (NM_001127259, intron 4 of 13)	31856	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding
chipseq_peak_3032	chr12	59260094	59261029	+	0	NA	Intergenic	Intergenic	-41078	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_12576	chr8	5591379	5591989	+	0	NA	Intergenic	Intergenic	-486452	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_5570	chr16	27966186	27967185	+	0	NA	Intergenic	L1_Mur3|LINE|L1	116755	NR_033475	100038623	Mm.387135	NR_033475		Gm10823	ENSMUSG00000075290	predicted gene 10823	ncRNA
chipseq_peak_10546	chr5	58331364	58331743	+	0	NA	Intergenic	Intergenic	121445	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA
chipseq_peak_13244	chr8	124289438	124290958	+	0	NA	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	58804	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
chipseq_peak_12928	chr8	60028386	60029052	+	0	NA	Intergenic	Intergenic	203070	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
chipseq_peak_12978	chr8	68127076	68127749	+	0	NA	Intergenic	Intergenic	-149116	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding
chipseq_peak_6068	chr16	82458881	82459222	+	0	NA	Intergenic	Intergenic	1258354	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
chipseq_peak_10869	chr5	106331814	106332374	+	0	NA	Intergenic	Intergenic	126072	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding
chipseq_peak_7584	chr2	42794835	42795616	+	0	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	-141627	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding
chipseq_peak_4357	chr14	64426298	64426726	+	0	NA	intron (NM_001253712, intron 1 of 5)	intron (NM_001253712, intron 1 of 5)	-9556	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_7500	chr2	21188646	21188927	+	0	NA	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	16579	NM_027728	71233	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding
chipseq_peak_13313	chr9	13242363	13242629	+	0	NA	TTS (NM_001033181)	TTS (NM_001033181)	3245	NM_001033181	77532	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding
chipseq_peak_12678	chr8	19701164	19701559	+	0	NA	Intergenic	L1MB7|LINE|L1	-28215	NM_001270553	100861668	Mm.491087	NM_001270553		Gm21119	-	predicted gene, 21119	protein-coding
chipseq_peak_5547	chr16	25058778	25059647	+	0	NA	promoter-TSS (NR_040374)	promoter-TSS (NR_040374)	-427	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA
chipseq_peak_2204	chr11	25752487	25753002	+	0	NA	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	426637	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_12119	chr7	54342048	54343816	+	0	NA	Intergenic	Intergenic	-451043	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
chipseq_peak_11355	chr6	33761629	33762035	+	0	NA	intron (NM_009148, intron 11 of 17)	intron (NM_009148, intron 11 of 17)	-267616	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding
chipseq_peak_2092	chr10	126016229	126016625	+	0	NA	Intergenic	Intergenic	50208	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
chipseq_peak_13476	chr9	41391835	41392218	+	0	NA	intron (NR_131929, intron 1 of 4)	intron (NR_131929, intron 1 of 4)	15500	NR_131928	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA
chipseq_peak_12807	chr8	45507575	45509081	+	0	NA	intron (NM_172752, intron 1 of 22)	intron (NM_172752, intron 1 of 22)	540	NM_001205219	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777	sorbin and SH3 domain containing 2	protein-coding
chipseq_peak_8027	chr2	101300075	101301503	+	0	NA	Intergenic	L1MC2|LINE|L1	-323959	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
chipseq_peak_3904	chr13	94212063	94212557	+	0	NA	intron (NM_029153, intron 6 of 8)	L1M4|LINE|L1	72971	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding
chipseq_peak_10581	chr5	63420861	63421653	+	0	NA	Intergenic	Intergenic	-227846	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding
chipseq_peak_7749	chr2	57564793	57566190	+	0	NA	Intergenic	UCON28b|Unknown|Unknown	327109	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding
chipseq_peak_5549	chr16	25254983	25256173	+	0	NA	Intergenic	Intergenic	-31239	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding
chipseq_peak_7659	chr2	46609304	46609540	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	912817	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
chipseq_peak_1689	chr10	69859117	69859930	+	0	NA	intron (NM_170690, intron 8 of 41)	intron (NM_170690, intron 8 of 41)	-66009	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_12977	chr8	68125358	68126187	+	0	NA	Intergenic	Intergenic	-150756	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding
chipseq_peak_12664	chr8	16695580	16696371	+	0	NA	intron (NM_053171, intron 5 of 69)	intron (NM_053171, intron 5 of 69)	-527137	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_9354	chr3	149226662	149227689	+	0	NA	Intergenic	Intergenic	-47562	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_9182	chr3	122801374	122801753	+	0	NA	intron (NR_045168, intron 1 of 3)	intron (NR_045168, intron 1 of 3)	417	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA
chipseq_peak_9690	chr4	31525453	31526216	+	0	NA	Intergenic	Intergenic	-438273	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_4066	chr13	111096187	111097613	+	0	NA	Intergenic	Intergenic	132531	NR_045908	73129	Mm.417826	NR_045908		3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA
chipseq_peak_8303	chr2	144467817	144468152	+	0	NA	TTS (NR_033459)	TTS (NR_033459)	2808	NR_038065	171588	Mm.450554	NR_038065	ENSMUSG00000083674	Gm38402	-	zinc finger protein pseudogene	pseudo
chipseq_peak_6529	chr17	90721461	90722010	+	0	NA	intron (NM_020252, intron 4 of 22)	intron (NM_020252, intron 4 of 22)	-139434	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_3543	chr13	39091238	39092394	+	0	NA	Intergenic	B1F|SINE|Alu	-130941	NM_001170431	108652	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding
chipseq_peak_1313	chr10	17983041	17983943	+	0	NA	Intergenic	Intergenic	-35425	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	headcase homolog (Drosophila)	protein-coding
chipseq_peak_5035	chr15	42914081	42914382	+	0	NA	Intergenic	Intergenic	-237254	NM_009640	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
chipseq_peak_3686	chr13	69864955	69865402	+	0	NA	Intergenic	Intergenic	55296	NM_138596	28077	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding
chipseq_peak_5219	chr15	63532231	63533070	+	0	NA	Intergenic	Intergenic	-53042	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA
chipseq_peak_9109	chr3	117044175	117044938	+	0	NA	Intergenic	Intergenic	33209	NR_038029	433646	Mm.158997	NR_038029	ENSMUSG00000028009	1700061I17Rik	-	RIKEN cDNA 1700061I17 gene	ncRNA
chipseq_peak_2639	chr12	5726671	5727156	+	0	NA	Intergenic	Intergenic	350411	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA
chipseq_peak_11461	chr6	47191168	47191755	+	0	NA	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-52935	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_9240	chr3	133745630	133746140	+	0	NA	Intergenic	Intergenic	-201495	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding
chipseq_peak_13166	chr8	106805206	106805614	+	0	NA	intron (NM_173037, intron 15 of 17)	L4_C_Mam|LINE|RTE-X	-64832	NM_008217	15118	Mm.56986	NM_008217	ENSMUSG00000031910	Has3	-	hyaluronan synthase 3	protein-coding
chipseq_peak_7893	chr2	73987755	73988703	+	0	NA	Intergenic	Intergenic	-76903	NM_175015	228033	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding
chipseq_peak_13924	chr9	113488673	113489052	+	0	NA	Intergenic	Intergenic	98290	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_10668	chr5	73686194	73686808	+	0	NA	Intergenic	Intergenic	35121	NM_178387	73472	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding
chipseq_peak_9940	chr4	78362878	78363264	+	0	NA	Intergenic	Intergenic	-151176	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_7273	chr19	47542553	47542978	+	0	NA	Intergenic	Intergenic	-5745	NM_175360	108689	Mm.218048	NM_175360	ENSMUSG00000042694	Obfc1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|RPA-32	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding
chipseq_peak_6526	chr17	90639091	90639615	+	0	NA	intron (NM_020252, intron 9 of 22)	intron (NM_020252, intron 9 of 22)	-221816	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_12482	chr7	119861489	119861809	+	0	NA	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	33809	NM_173408	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding
chipseq_peak_6828	chr18	52406838	52408655	+	0	NA	Intergenic	L1MA5A|LINE|L1	-57947	NM_026040	67222	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding
chipseq_peak_8945	chr3	81270015	81270703	+	0	NA	Intergenic	Intergenic	233943	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding
chipseq_peak_4562	chr14	95179985	95180318	+	0	NA	Intergenic	Intergenic	-701115	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding
chipseq_peak_4918	chr15	24968888	24969914	+	0	NA	Intergenic	Intergenic	444363	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
chipseq_peak_3453	chr13	16766322	16766629	+	0	NA	Intergenic	Intergenic	752000	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_3941	chr13	98977835	98978321	+	0	NA	Intergenic	Intergenic	6487	NM_027064	69382	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding
chipseq_peak_459	chr1	66155568	66155894	+	0	NA	Intergenic	Intergenic	-19598	NM_001039934	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding
chipseq_peak_9806	chr4	53513888	53514456	+	0	NA	intron (NM_001159633, intron 3 of 12)	intron (NM_001159633, intron 3 of 12)	73759	NM_001159633	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding
chipseq_peak_1919	chr10	105976840	105977519	+	0	NA	Intergenic	Intergenic	135700	NM_025602	52713	Mm.339224	NM_025602		Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding
chipseq_peak_12000	chr6	144911666	144912112	+	0	NA	Intergenic	Intergenic	136923	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding
chipseq_peak_9915	chr4	76366007	76366279	+	0	NA	intron (NM_011211, intron 10 of 39)	intron (NM_011211, intron 10 of 39)	-1087857	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_10596	chr5	65958513	65958831	+	0	NA	Intergenic	Intergenic	-8452	NM_001081104	231252	Mm.486671	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding
chipseq_peak_10805	chr5	96678466	96679099	+	0	NA	intron (NM_175473, intron 32 of 73)	intron (NM_175473, intron 32 of 73)	-114603	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding
chipseq_peak_9270	chr3	138064181	138065041	+	0	NA	intron (NR_037975, intron 1 of 3)	intron (NR_037975, intron 1 of 3)	2777	NR_037975	329763	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA
chipseq_peak_947	chr1	155417471	155417882	+	0	NA	promoter-TSS (NM_011273)	promoter-TSS (NM_011273)	-232	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding
chipseq_peak_12352	chr7	92125636	92126856	+	0	NA	intron (NM_011807, intron 12 of 22)	intron (NM_011807, intron 12 of 22)	-6735	NR_131016	75845	Mm.437835	NR_131016		4930567K12Rik	-	RIKEN cDNA 4930567K12 gene	ncRNA
chipseq_peak_13050	chr8	86324327	86324813	+	0	NA	Intergenic	Intergenic	242020	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
chipseq_peak_1338	chr10	21762404	21764920	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	72817	NR_045843	432436	Mm.244553	NM_001004162		Gm5420	EG432436	predicted gene 5420	ncRNA
chipseq_peak_3724	chr13	77476468	77477369	+	0	NA	intron (NM_001145676, intron 19 of 19)	intron (NM_001145676, intron 19 of 19)	-231772	NM_001163419	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding
chipseq_peak_13051	chr8	86331553	86332225	+	0	NA	Intergenic	Intergenic	234701	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
chipseq_peak_205	chr1	33946613	33947477	+	0	NA	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	38820	NM_001276764	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding
chipseq_peak_13268	chr8	127939478	127940235	+	0	NA	Intergenic	Intergenic	338369	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA
chipseq_peak_8701	chr3	52702899	52704036	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	-36257	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA
chipseq_peak_13910	chr9	113072955	113074173	+	0	NA	Intergenic	Intergenic	513588	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_7669	chr2	47832939	47834618	+	0	NA	Intergenic	Intergenic	-980331	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_12882	chr8	54893512	54896375	+	0	NA	intron (NM_001253754, intron 1 of 6)	intron (NM_001253754, intron 1 of 6)	-59785	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_12267	chr7	81654132	81654683	+	0	NA	intron (NM_011983, intron 1 of 8)	intron (NM_011983, intron 1 of 8)	38558	NM_001164087	26557	Mm.228	NM_011983	ENSMUSG00000025813	Homer2	9330120H11Rik|AW539445|CPD|Vesl-2	homer homolog 2 (Drosophila)	protein-coding
chipseq_peak_3435	chr13	16010635	16011982	+	0	NA	Intergenic	Intergenic	-3167	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_12761	chr8	39269051	39269447	+	0	NA	Intergenic	Intergenic	-28731	NR_044988	621335	Mm.208080	NR_044988		Gm6213	EG621335	predicted gene 6213	ncRNA
chipseq_peak_392	chr1	56395109	56396365	+	0	NA	Intergenic	Intergenic	241714	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_7465	chr2	12776743	12777213	+	0	NA	Intergenic	Intergenic	-147063	NM_001305437	19212	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding
chipseq_peak_7907	chr2	76578894	76579525	+	0	NA	exon (NM_001290734, exon 15 of 25)	exon (NM_001290734, exon 15 of 25)	68785	NM_011871	23992	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding
chipseq_peak_12570	chr7	140053980	140054931	+	0	NA	Intergenic	Lx7|LINE|L1	-5367	NM_010836	17703	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding
chipseq_peak_4783	chr15	9001960	9003935	+	0	NA	intron (NM_198024, intron 5 of 13)	intron (NM_198024, intron 5 of 13)	34998	NM_198024	223332	Mm.321371	NM_198024		Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding
chipseq_peak_13605	chr9	59199592	59200329	+	0	NA	Intergenic	MER121|DNA|TcMar?	-91612	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding
chipseq_peak_5430	chr15	95473879	95474347	+	0	NA	intron (NM_001289653, intron 3 of 20)	intron (NM_001289653, intron 3 of 20)	54139	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding
chipseq_peak_5528	chr16	22039678	22040214	+	0	NA	intron (NM_029457, intron 12 of 16)	intron (NM_029457, intron 12 of 16)	30462	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding
chipseq_peak_11821	chr6	108142619	108143494	+	0	NA	intron (NM_145937, intron 7 of 8)	intron (NM_145937, intron 7 of 8)	42527	NM_145937	58911	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding
chipseq_peak_2790	chr12	29750915	29752307	+	0	NA	intron (NM_008666, intron 4 of 24)	intron (NM_008666, intron 4 of 24)	-65166	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA
chipseq_peak_13053	chr8	86352209	86352559	+	0	NA	Intergenic	Intergenic	214206	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
chipseq_peak_5557	chr16	26253800	26254304	+	0	NA	Intergenic	Intergenic	117787	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding
chipseq_peak_9471	chr4	7209962	7210398	+	0	NA	Intergenic	RSINE1|SINE|B4	-219457	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_10057	chr4	96968703	96969744	+	0	NA	Intergenic	Intergenic	-184063	NM_001081284	620779	Mm.439625	NM_001081284	ENSMUSG00000078639	Gm12695	OTTMUSG00000008003	predicted gene 12695	protein-coding
chipseq_peak_11676	chr6	95759582	95760071	+	0	NA	Intergenic	Intergenic	-40980	NM_011507	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding
chipseq_peak_10144	chr4	119606162	119606711	+	0	NA	intron (NM_001290696, intron 5 of 11)	intron (NM_001290696, intron 5 of 11)	-31296	NM_008190	14915	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding
chipseq_peak_5920	chr16	71532209	71532684	+	0	NA	Intergenic	Intergenic	282542	NR_040576	78221	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA
chipseq_peak_8291	chr2	142813017	142813653	+	0	NA	intron (NM_001081133, intron 12 of 25)	intron (NM_001081133, intron 12 of 25)	88129	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_7489	chr2	17723849	17724753	+	0	NA	intron (NM_028757, intron 2 of 6)	intron (NM_028757, intron 2 of 6)	6767	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding
chipseq_peak_11704	chr6	98218169	98218659	+	0	NA	Intergenic	Intergenic	124340	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_9263	chr3	136996077	136996476	+	0	NA	Intergenic	Intergenic	326210	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding
chipseq_peak_8245	chr2	140259413	140259913	+	0	NA	intron (NM_001033296, intron 10 of 19)	intron (NM_001033296, intron 10 of 19)	89017	NM_027093	69487	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding
chipseq_peak_1769	chr10	90003649	90004905	+	0	NA	intron (NM_001128086, intron 1 of 24)	AT_rich|Low_complexity|Low_complexity	130768	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_10804	chr5	96675276	96676091	+	0	NA	intron (NM_175473, intron 31 of 73)	intron (NM_175473, intron 31 of 73)	-117702	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding
chipseq_peak_9854	chr4	66557000	66557221	+	0	NA	Intergenic	Intergenic	-152627	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
chipseq_peak_3491	chr13	26267206	26267849	+	0	NA	Intergenic	L1MB8|LINE|L1	44879	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA
chipseq_peak_5414	chr15	94883771	94885515	+	0	NA	intron (NM_178789, intron 4 of 7)	Lx8b|LINE|L1	255458	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding
chipseq_peak_1779	chr10	91073435	91073810	+	0	NA	intron (NM_001282947, intron 4 of 26)	intron (NM_001282947, intron 4 of 26)	9121	NM_009684	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding
chipseq_peak_10052	chr4	94523342	94525328	+	0	NA	intron (NM_026368, intron 4 of 5)	intron (NM_026368, intron 4 of 5)	32461	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
chipseq_peak_13293	chr9	9684551	9685966	+	0	NA	intron (NM_001170787, intron 21 of 24)	intron (NM_001170787, intron 21 of 24)	-209173	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_4805	chr15	12908236	12908899	+	0	NA	intron (NM_026799, intron 26 of 34)	intron (NM_026799, intron 26 of 34)	83752	NM_026799	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding
chipseq_peak_9647	chr4	27116404	27118938	+	0	NA	Intergenic	Intergenic	-412222	NR_040656	75360	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA
chipseq_peak_7565	chr2	39102491	39103365	+	0	NA	intron (NM_178778, intron 11 of 17)	intron (NM_178778, intron 11 of 17)	-37387	NM_001290649	76899	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding
chipseq_peak_4990	chr15	35513657	35514560	+	0	NA	intron (NM_177151, intron 17 of 61)	intron (NM_177151, intron 17 of 61)	142562	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B (yeast)	protein-coding
chipseq_peak_8346	chr2	157986140	157986671	+	0	NA	intron (NM_029282, intron 6 of 6)	intron (NM_029282, intron 6 of 6)	22955	NM_029282	75425	Mm.29068	NM_029282	ENSMUSG00000027650	Tti1	2610036D13Rik|AI449463	TELO2 interacting protein 1	protein-coding
chipseq_peak_9042	chr3	102620057	102620452	+	0	NA	Intergenic	Intergenic	-114516	NM_027533	70747	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding
chipseq_peak_10145	chr4	119761349	119762022	+	0	NA	Intergenic	Intergenic	-52993	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
chipseq_peak_6218	chr17	30117839	30118406	+	0	NA	intron (NM_148926, intron 2 of 4)	intron (NM_148926, intron 2 of 4)	113035	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding
chipseq_peak_8315	chr2	146871227	146871806	+	0	NA	intron (NM_001033298, intron 4 of 13)	intron (NM_001033298, intron 4 of 13)	15627	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding
chipseq_peak_12656	chr8	16212130	16212658	+	0	NA	intron (NM_053171, intron 17 of 69)	intron (NM_053171, intron 17 of 69)	-43556	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_4637	chr14	108319026	108319447	+	0	NA	Intergenic	Intergenic	595003	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_1926	chr10	106254169	106254527	+	0	NA	Intergenic	L1MB8|LINE|L1	-215962	NM_001205341	327814	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding
chipseq_peak_2528	chr11	101023906	101024382	+	0	NA	intron (NM_001243050, intron 5 of 20)	intron (NM_001243050, intron 5 of 20)	-6196	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA
chipseq_peak_11266	chr6	21213787	21214356	+	0	NA	Intergenic	Intergenic	-2038	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding
chipseq_peak_3076	chr12	65668499	65669161	+	0	NA	Intergenic	Intergenic	443313	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding
chipseq_peak_8450	chr3	9960137	9960934	+	0	NA	Intergenic	Intergenic	-52050	NM_010634	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding
chipseq_peak_1721	chr10	74480780	74481264	+	0	NA	intron (NM_001142735, intron 21 of 32)	intron (NM_001142735, intron 21 of 32)	-486209	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding
chipseq_peak_11843	chr6	110733865	110734311	+	0	NA	intron (NM_177328, intron 1 of 9)	B3A|SINE|B2	88490	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_3985	chr13	104453279	104453772	+	0	NA	intron (NM_001081020, intron 20 of 24)	intron (NM_001081020, intron 20 of 24)	165652	NM_001081020	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	5031426K13|A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding
chipseq_peak_1693	chr10	70750418	70750671	+	0	NA	Intergenic	Intergenic	-94581	NR_045292	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA
chipseq_peak_10275	chr5	10685045	10686280	+	0	NA	Intergenic	Intergenic	-179367	NR_003596	623849	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo
chipseq_peak_3835	chr13	84804635	84806180	+	0	NA	Intergenic	Intergenic	-384070	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
chipseq_peak_3618	chr13	47647461	47648100	+	0	NA	Intergenic	Intergenic	-262655	NR_045156	619327	Mm.412752	NR_045156		G630093K05Rik	-	RIKEN cDNA G630093K05 gene	ncRNA
chipseq_peak_1098	chr1	177079998	177080346	+	0	NA	intron (NM_011785, intron 6 of 12)	intron (NM_011785, intron 6 of 12)	168595	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_4983	chr15	34656888	34657252	+	0	NA	intron (NM_145469, intron 1 of 10)	L1MD2|LINE|L1	-18003	NR_045883	71637	Mm.410827	NR_045883		4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA
chipseq_peak_8453	chr3	10703054	10704049	+	0	NA	Intergenic	Intergenic	-263421	NM_001127191	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding
chipseq_peak_5000	chr15	37681764	37682212	+	0	NA	intron (NM_134094, intron 1 of 6)	intron (NM_134094, intron 1 of 6)	110012	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding
chipseq_peak_1681	chr10	69491643	69492672	+	0	NA	Intergenic	L1MA5A|LINE|L1	-41551	NM_170729	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_6242	chr17	41153923	41154629	+	0	NA	Intergenic	Intergenic	219591	NM_008650	17850	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding
chipseq_peak_5149	chr15	55200214	55200460	+	0	NA	intron (NM_145470, intron 4 of 8)	intron (NM_145470, intron 4 of 8)	66901	NM_001037937	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding
chipseq_peak_85	chr1	21600738	21601505	+	0	NA	intron (NM_001310477, intron 1 of 12)	L3|LINE|CR1	217565	NM_001113187	98582	Mm.326336	NM_001113187	ENSMUSG00000085079	Khdc1b	AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c	KH domain containing 1B	protein-coding
chipseq_peak_12278	chr7	84121800	84122371	+	0	NA	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	29808	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding
chipseq_peak_7416	chr2	7922365	7923857	+	0	NA	Intergenic	Intergenic	-526913	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_5782	chr16	54320678	54321898	+	0	NA	Intergenic	Intergenic	961949	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
chipseq_peak_6681	chr18	26588265	26588672	+	0	NA	Intergenic	Intergenic	-834485	NM_001146294	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
chipseq_peak_13829	chr9	103696722	103697248	+	0	NA	intron (NM_178638, intron 2 of 5)	intron (NM_178638, intron 2 of 5)	64852	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding
chipseq_peak_13086	chr8	93643514	93644202	+	0	NA	Intergenic	Intergenic	-108151	NM_001003951	67935	Mm.65457	NM_001003951	ENSMUSG00000058019	Ces5a	1700081L16Rik|1700122C07Rik|BB081581|Ces7|Gm503|cauxin	carboxylesterase 5A	protein-coding
chipseq_peak_674	chr1	104215911	104216316	+	0	NA	Intergenic	Intergenic	-552706	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_6037	chr16	77685397	77686085	+	0	NA	Intergenic	Intergenic	39468	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_10979	chr5	124293878	124294293	+	0	NA	intron (NM_001277867, intron 10 of 22)	AT_rich|Low_complexity|Low_complexity	33887	NM_001277867	269702	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding
chipseq_peak_11774	chr6	103749176	103749602	+	0	NA	Intergenic	Intergenic	238513	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_6657	chr18	23535629	23536189	+	0	NA	intron (NM_207650, intron 3 of 20)	intron (NM_207650, intron 3 of 20)	38427	NM_001285808	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding
chipseq_peak_13985	chrX	43196467	43197489	+	0	NA	intron (NM_011855, intron 1 of 32)	intron (NM_011855, intron 1 of 32)	77806	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding
chipseq_peak_2049	chr10	122543469	122544536	+	0	NA	Intergenic	Intergenic	25889	NR_040616	319272	Mm.411763	NR_040616		A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA
chipseq_peak_6816	chr18	51191099	51191431	+	0	NA	intron (NM_001081224, intron 1 of 1)	L2a|LINE|L2	73367	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding
chipseq_peak_12293	chr7	89035148	89035991	+	0	NA	Intergenic	Intergenic	303218	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding
chipseq_peak_6132	chr16	96896827	96897118	+	0	NA	intron (NM_031174, intron 3 of 32)	intron (NM_031174, intron 3 of 32)	273763	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding
chipseq_peak_3105	chr12	69002225	69002572	+	0	NA	Intergenic	Intergenic	156788	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding
chipseq_peak_6052	chr16	78969467	78969918	+	0	NA	intron (NM_008941, intron 22 of 27)	intron (NM_008941, intron 22 of 27)	38744	NM_139134	246048	Mm.77895	NM_139134	ENSMUSG00000022860	Chodl	3110074E07Rik|MT75|PRED12	chondrolectin	protein-coding
chipseq_peak_2545	chr11	103115390	103115809	+	0	NA	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-726	NM_138753	192231	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding
chipseq_peak_13682	chr9	73612682	73613212	+	0	NA	intron (NM_001081153, intron 17 of 30)	intron (NM_001081153, intron 17 of 30)	320620	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding
chipseq_peak_11509	chr6	54331873	54332310	+	0	NA	intron (NR_033635, intron 3 of 13)	intron (NR_033635, intron 3 of 13)	5079	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding
chipseq_peak_10996	chr5	127163396	127163868	+	0	NA	Intergenic	Intergenic	-6933	NR_045371	75916	Mm.394659	NR_045371	ENSMUSG00000105308	4930572K03Rik	-	RIKEN cDNA 4930572K03 gene	ncRNA
chipseq_peak_9272	chr3	138626149	138626531	+	0	NA	Intergenic	Intergenic	99072	NM_001313980	13684	Mm.3941	NM_007917		Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
chipseq_peak_9557	chr4	16669677	16670533	+	0	NA	Intergenic	Intergenic	505995	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA
chipseq_peak_18	chr1	7548584	7549088	+	0	NA	Intergenic	Intergenic	459916	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
chipseq_peak_5774	chr16	53212047	53212700	+	0	NA	Intergenic	Intergenic	-396629	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA
chipseq_peak_12942	chr8	62748534	62748996	+	0	NA	Intergenic	Intergenic	-202467	NM_001252621	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding
chipseq_peak_3289	chr12	95387951	95389052	+	0	NA	Intergenic	UCON26|Unknown|Unknown	-303725	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
chipseq_peak_4524	chr14	89356953	89357724	+	0	NA	Intergenic	Intergenic	-538886	NR_002862	328451	Mm.320571	NR_002862		Gm5088	EG328451|Pabpc4l	poly(A)-binding protein, cytoplasmic pseudogene	pseudo
chipseq_peak_12201	chr7	71943127	71943882	+	0	NA	Intergenic	Intergenic	-17671	NR_126462	75451	Mm.396165	NR_126462		1700011C11Rik	-	RIKEN cDNA 1700011C11 gene	ncRNA
chipseq_peak_11753	chr6	102541841	102542251	+	0	NA	Intergenic	Intergenic	-77379	NM_008779	18488	Mm.435479	NM_008779	ENSMUSG00000030075	Cntn3	Pang	contactin 3	protein-coding
chipseq_peak_14069	chrX	121990256	121991014	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	406750	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding
chipseq_peak_6121	chr16	94945639	94946079	+	0	NA	intron (NM_001025584, intron 1 of 4)	intron (NM_001025584, intron 1 of 4)	51837	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
chipseq_peak_13679	chr9	72968482	72969255	+	0	NA	intron (NM_026314, intron 6 of 8)	intron (NM_026314, intron 6 of 8)	10083	NM_001163725	67685	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|EKN1|b2b811Clo	dyslexia susceptibility 1 candidate 1 homolog (human)	protein-coding
chipseq_peak_10302	chr5	14700687	14701340	+	0	NA	intron (NM_001110796, intron 6 of 19)	intron (NM_001110796, intron 6 of 19)	186095	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding
chipseq_peak_6310	chr17	54436826	54437312	+	0	NA	Intergenic	Lx8|LINE|L1	-66995	NR_045825	69418	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA
chipseq_peak_9888	chr4	72469157	72469748	+	0	NA	Intergenic	Intergenic	268208	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA
chipseq_peak_3739	chr13	79182564	79183224	+	0	NA	Intergenic	Intergenic	-983912	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding
chipseq_peak_4525	chr14	89402690	89403075	+	0	NA	Intergenic	Intergenic	-493342	NR_002862	328451	Mm.320571	NR_002862		Gm5088	EG328451|Pabpc4l	poly(A)-binding protein, cytoplasmic pseudogene	pseudo
chipseq_peak_9315	chr3	143264163	143265360	+	0	NA	Intergenic	Intergenic	21706	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA
chipseq_peak_3589	chr13	45862273	45862811	+	0	NA	intron (NM_009124, intron 2 of 7)	intron (NM_009124, intron 2 of 7)	102449	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding
chipseq_peak_12222	chr7	74710522	74711786	+	0	NA	Intergenic	ID_B1|SINE|B4	-156374	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding
chipseq_peak_13619	chr9	60875481	60877310	+	0	NA	exon (NM_028283, exon 18 of 19)	exon (NM_028283, exon 18 of 19)	81847	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
chipseq_peak_11064	chr5	136482283	136482898	+	0	NA	intron (NM_198602, intron 2 of 22)	intron (NM_198602, intron 2 of 22)	83391	NM_001291233	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
chipseq_peak_8889	chr3	76346148	76347171	+	0	NA	intron (NM_178673, intron 4 of 15)	intron (NM_178673, intron 4 of 15)	271076	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding
chipseq_peak_6155	chr17	4006398	4007174	+	0	NA	Intergenic	Intergenic	76209	NR_045764	75815	Mm.183387	NR_045764		4930470H14Rik	-	RIKEN cDNA 4930470H14 gene	ncRNA
chipseq_peak_7783	chr2	60813067	60813398	+	0	NA	intron (NM_001141931, intron 2 of 13)	intron (NM_001141931, intron 2 of 13)	68206	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
chipseq_peak_8178	chr2	131897365	131898150	+	0	NA	Intergenic	Intergenic	-12171	NM_001278258	111368		NM_001278258	ENSMUSG00000098754	Prn	Gm28045|Prnp-Prnd	prion protein gene complex	protein-coding
chipseq_peak_9273	chr3	138648673	138649093	+	0	NA	Intergenic	Intergenic	78101	NR_040545	74635	Mm.410825	NR_040545	ENSMUSG00000105838	4930425O10Rik	-	RIKEN cDNA 4930425O10 gene	ncRNA
chipseq_peak_13440	chr9	33822471	33823426	+	0	NA	Intergenic	Intergenic	-219423	NR_040744	77119	Mm.367930	NR_040744	ENSMUSG00000098758	7630403G23Rik	-	RIKEN cDNA 7630403G23 gene	ncRNA
chipseq_peak_4471	chr14	81250492	81250817	+	0	NA	Intergenic	Intergenic	1250352	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_661	chr1	100034005	100034556	+	0	NA	intron (NM_172851, intron 3 of 23)	GA-rich|Low_complexity|Low_complexity	261515	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding
chipseq_peak_2265	chr11	37800687	37801068	+	0	NA	Intergenic	Intergenic	141888	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	OTTMUSG00000005422	predicted gene 12128	ncRNA
chipseq_peak_4917	chr15	24967079	24967471	+	0	NA	Intergenic	L1M2|LINE|L1	446489	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
chipseq_peak_7097	chr19	17674019	17674756	+	0	NA	intron (NM_001190483, intron 7 of 37)	intron (NM_001190483, intron 7 of 37)	163245	NM_001163144	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding
chipseq_peak_13952	chr9	121174753	121175613	+	0	NA	intron (NM_177589, intron 21 of 36)	intron (NM_177589, intron 21 of 36)	101989	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding
chipseq_peak_3175	chr12	74848927	74849317	+	0	NA	Intergenic	Intergenic	328210	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding
chipseq_peak_11761	chr6	103275449	103276072	+	0	NA	Intergenic	Intergenic	-235116	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_11500	chr6	52794945	52795438	+	0	NA	intron (NM_173406, intron 3 of 4)	intron (NM_173406, intron 3 of 4)	81462	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding
chipseq_peak_9896	chr4	74051481	74052145	+	0	NA	intron (NM_172869, intron 1 of 13)	intron (NM_172869, intron 1 of 13)	38210	NM_172869	242506	Mm.221597	NM_172869	ENSMUSG00000049122	Frmd3	4.1O|9430066I12Rik|EPB41L4O|P410	FERM domain containing 3	protein-coding
chipseq_peak_9	chr1	6732197	6733423	+	0	NA	intron (NM_173868, intron 1 of 21)	intron (NM_173868, intron 1 of 21)	2759	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
chipseq_peak_9841	chr4	62582414	62583079	+	0	NA	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	22899	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding
chipseq_peak_7383	chr2	6911351	6912200	+	0	NA	intron (NM_001110229, intron 2 of 14)	intron (NM_001110229, intron 2 of 14)	16947	NR_027890	68144	Mm.483289	NM_026575		5031426D15Rik	-	RIKEN cDNA 5031426D15 gene	ncRNA
chipseq_peak_1883	chr10	101316514	101317403	+	0	NA	Intergenic	Intergenic	-364529	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
chipseq_peak_14142	chrX	166893424	166893797	+	0	NA	Intergenic	RSINE1|SINE|B4	176760	NM_001101606	667794	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding
chipseq_peak_7610	chr2	43923968	43924375	+	0	NA	intron (NM_001301832, intron 7 of 14)	intron (NM_001301832, intron 7 of 14)	141153	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_12202	chr7	72203254	72203657	+	0	NA	intron (NM_001024703, intron 10 of 22)	intron (NM_001024703, intron 10 of 22)	103140	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding
chipseq_peak_2362	chr11	57376385	57377177	+	0	NA	Intergenic	L1MEf|LINE|L1	141863	NM_001168668	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding
chipseq_peak_9138	chr3	118095554	118096617	+	0	NA	Intergenic	Intergenic	-227149	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_835	chr1	137910273	137911123	+	0	NA	Intergenic	Intergenic	-55757	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA
chipseq_peak_6689	chr18	29206245	29206950	+	0	NA	Intergenic	Intergenic	-235603	NR_045395	78199	Mm.243850	NR_045395		4930527G23Rik	-	RIKEN cDNA 4930527G23 gene	ncRNA
chipseq_peak_10879	chr5	107611289	107611832	+	0	NA	intron (NM_001289569, intron 6 of 12)	AT_rich|Low_complexity|Low_complexity	-13672	NM_001161738	170823	Mm.41417	NM_133248	ENSMUSG00000029276	Glmn	9330160J16Rik|AW227515|Fap48|Fap68	glomulin, FKBP associated protein	protein-coding
chipseq_peak_11100	chr5	146339289	146339801	+	0	NA	Intergenic	Lx8b|LINE|L1	-45461	NM_145155	245880	Mm.472750	NM_145155		Wasf3	Scar3|Wave3	WAS protein family, member 3	protein-coding
chipseq_peak_2549	chr11	104878420	104878921	+	0	NA	Intergenic	Intergenic	-213549	NM_001081046	70894	Mm.87320	NM_001081046	ENSMUSG00000020690	Efcab3	4921510J17Rik	EF-hand calcium binding domain 3	protein-coding
chipseq_peak_12676	chr8	18216415	18217785	+	0	NA	Intergenic	Intergenic	-378073	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding
chipseq_peak_8036	chr2	102634040	102634353	+	0	NA	intron (NM_173749, intron 6 of 10)	intron (NM_173749, intron 6 of 10)	-24487	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding
chipseq_peak_10884	chr5	110949082	110951019	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-54094	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_7726	chr2	55435499	55436022	+	0	NA	promoter-TSS (NM_001304810)	promoter-TSS (NM_001304810)	-210	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
chipseq_peak_4484	chr14	84223329	84223767	+	0	NA	Intergenic	Lx7|LINE|L1	-220015	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
chipseq_peak_5370	chr15	87890671	87891281	+	0	NA	Intergenic	L1ME3F|LINE|L1	-95033	NR_105817	102465209		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA
chipseq_peak_6333	chr17	60761142	60761379	+	0	NA	Intergenic	Lx10|LINE|L1	-1747938	NM_026497	67993	Mm.36507	NM_026497		Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chipseq_peak_240	chr1	39312173	39313069	+	0	NA	intron (NM_008719, intron 6 of 20)	intron (NM_008719, intron 6 of 20)	-55230	NM_001252218	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	-	ribosomal protein L31	protein-coding
chipseq_peak_5197	chr15	61983287	61985456	+	0	NA	promoter-TSS (NM_001177353)	promoter-TSS (NM_001177353)	-970	NM_010849	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding
chipseq_peak_13459	chr9	37891012	37891367	+	0	NA	Intergenic	Intergenic	-6217	NM_146313	258310	Mm.377430	NM_146313	ENSMUSG00000066748	Olfr145	K21|MOR161-6	olfactory receptor 145	protein-coding
chipseq_peak_13596	chr9	59059400	59060620	+	0	NA	Intergenic	Intergenic	-23569	NM_001042752	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding
chipseq_peak_3531	chr13	35937957	35938367	+	0	NA	Intergenic	Intergenic	-29744	NM_029628	76487	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding
chipseq_peak_943	chr1	154531669	154533695	+	0	NA	intron (NM_009782, intron 7 of 46)	intron (NM_009782, intron 7 of 46)	193238	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
chipseq_peak_12446	chr7	112502128	112502689	+	0	NA	intron (NM_020606, intron 1 of 12)	intron (NM_020606, intron 1 of 12)	74702	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding
chipseq_peak_143	chr1	27641963	27642551	+	0	NA	Intergenic	Intergenic	-954797	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding
chipseq_peak_6819	chr18	51282071	51283296	+	0	NA	intron (NM_001081224, intron 1 of 1)	intron (NM_001081224, intron 1 of 1)	164785	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding
chipseq_peak_2290	chr11	40149342	40149842	+	0	NA	Intergenic	Intergenic	543090	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding
chipseq_peak_1195	chr1	192587534	192588001	+	0	NA	intron (NM_144881, intron 10 of 11)	intron (NM_144881, intron 10 of 11)	183452	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding
chipseq_peak_9973	chr4	81280423	81281213	+	0	NA	intron (NM_010820, intron 46 of 46)	intron (NM_010820, intron 46 of 46)	161997	NM_010820	17475	Mm.153039	NM_010820	ENSMUSG00000028402	Mpdz	AI225843|B930003D11Rik|MUPP1	multiple PDZ domain protein	protein-coding
chipseq_peak_4235	chr14	32002933	32003369	+	0	NA	Intergenic	Intergenic	-25952	NM_030166	78754	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
chipseq_peak_2066	chr10	123747985	123748762	+	0	NA	Intergenic	Intergenic	484297	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_9173	chr3	121009033	121009758	+	0	NA	Intergenic	Intergenic	-122663	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_2340	chr11	47765766	47766212	+	0	NA	intron (NR_105801, intron 3 of 3)	intron (NR_105801, intron 3 of 3)	308594	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA
chipseq_peak_3333	chr12	106107487	106108327	+	0	NA	Intergenic	Intergenic	97644	NM_001029844	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding
chipseq_peak_6271	chr17	49126708	49128280	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-13961	NR_038145	69311	Mm.46140	NR_038141	ENSMUSG00000101012	1700008K24Rik	-	RIKEN cDNA 1700008K24 gene	ncRNA
chipseq_peak_1743	chr10	85161520	85162471	+	0	NA	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	23059	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding
chipseq_peak_608	chr1	92011474	92012036	+	0	NA	intron (NM_207225, intron 5 of 26)	intron (NM_207225, intron 5 of 26)	168586	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding
chipseq_peak_11487	chr6	50485883	50486557	+	0	NA	Intergenic	L1M5|LINE|L1	-30050	NM_001163645	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chipseq_peak_6085	chr16	86546686	86547542	+	0	NA	Intergenic	MER121|DNA|TcMar?	-645989	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding
chipseq_peak_7440	chr2	8501074	8502180	+	0	NA	Intergenic	Intergenic	-687888	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_13742	chr9	86976330	86978053	+	0	NA	Intergenic	Intergenic	-38346	NM_001037907	382089	Mm.92244	NM_001037907	ENSMUSG00000047897	Ripply2	C030002E08Rik|Gm1122	ripply2 homolog (zebrafish)	protein-coding
chipseq_peak_9545	chr4	15146129	15147431	+	0	NA	intron (NM_178617, intron 1 of 12)	intron (NM_178617, intron 1 of 12)	2351	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding
chipseq_peak_1084	chr1	176946032	176949582	+	0	NA	intron (NM_029756, intron 14 of 17)	intron (NM_029756, intron 14 of 17)	-111674	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_12710	chr8	30511220	30512049	+	0	NA	Intergenic	Intergenic	-56761	NR_045856	71314	Mm.158666	NR_045856	ENSMUSG00000097044	4933433F19Rik	-	RIKEN cDNA 4933433F19 gene	ncRNA
chipseq_peak_8606	chr3	37816648	37817382	+	0	NA	Intergenic	Intergenic	-81798	NR_040559	626410	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA
chipseq_peak_1061	chr1	174246977	174247859	+	0	NA	exon (NM_011465, exon 52 of 52)	exon (NM_011465, exon 52 of 52)	3558	NM_146715	258710	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding
chipseq_peak_11636	chr6	81782792	81783414	+	0	NA	Intergenic	Intergenic	112560	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA
chipseq_peak_2356	chr11	52872679	52873612	+	0	NA	intron (NM_177059, intron 3 of 15)	intron (NM_177059, intron 3 of 15)	108439	NM_177059	320027	Mm.44518	NM_177059		Fstl4	B230374F23Rik|SPIG1|mKIAA1061	follistatin-like 4	protein-coding
chipseq_peak_10138	chr4	117202093	117202919	+	0	NA	Intergenic	Intergenic	-19882	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding
chipseq_peak_11481	chr6	50014424	50014994	+	0	NA	Intergenic	Intergenic	-95532	NM_001164734	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding
chipseq_peak_12821	chr8	48312209	48314899	+	0	NA	intron (NM_011857, intron 11 of 28)	intron (NM_011857, intron 11 of 28)	203541	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding
chipseq_peak_12514	chr7	127362397	127363109	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	13297	NM_175560	269997	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding
chipseq_peak_13014	chr8	77376877	77377429	+	0	NA	intron (NM_030113, intron 13 of 22)	intron (NM_030113, intron 13 of 22)	-139903	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA
chipseq_peak_3875	chr13	91178897	91179712	+	0	NA	intron (NM_025770, intron 2 of 7)	intron (NM_025770, intron 2 of 7)	44683	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding
chipseq_peak_4400	chr14	73469547	73469968	+	0	NA	Intergenic	LTR72_RN|LTR|ERV1	-40292	NM_026119	67381	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding
chipseq_peak_11048	chr5	133398854	133399364	+	0	NA	Intergenic	L1M5|LINE|L1	-700639	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
chipseq_peak_10253	chr5	5710939	5711512	+	0	NA	Intergenic	L1M5|LINE|L1	-16657	NM_028734	74051	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding
chipseq_peak_4339	chr14	62539656	62540272	+	0	NA	Intergenic	Intergenic	-15773	NM_001243857	629059	Mm.291864	NM_001243857	ENSMUSG00000035184	Fam124a	EG629059	family with sequence similarity 124, member A	protein-coding
chipseq_peak_10291	chr5	13525728	13526174	+	0	NA	intron (NM_009152, intron 6 of 16)	intron (NM_009152, intron 6 of 16)	126642	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
chipseq_peak_1736	chr10	83219620	83220684	+	0	NA	Intergenic	Intergenic	117665	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding
chipseq_peak_12156	chr7	58031631	58032764	+	0	NA	Intergenic	Intergenic	441024	NM_008071	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding
chipseq_peak_12618	chr8	9797530	9797853	+	0	NA	Intergenic	Intergenic	-26668	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding
chipseq_peak_10042	chr4	93126032	93126461	+	0	NA	Intergenic	Intergenic	209265	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding
chipseq_peak_10019	chr4	87819269	87820714	+	0	NA	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-13668	NM_029931	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	protein-coding
chipseq_peak_8400	chr2	170767122	170767675	+	0	NA	intron (NM_001163686, intron 1 of 7)	intron (NM_001163686, intron 1 of 7)	35591	NM_029761	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding
chipseq_peak_13310	chr9	12207813	12208222	+	0	NA	Intergenic	Intergenic	897838	NR_040755	78219	Mm.414868	NR_040755		4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA
chipseq_peak_6238	chr17	33915619	33916173	+	0	NA	promoter-TSS (NM_020625)	promoter-TSS (NM_020625)	-280	NM_020625	81630	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding
chipseq_peak_12275	chr7	83145519	83146045	+	0	NA	Intergenic	Intergenic	-174391	NR_045855	71285	Mm.76818	NR_045855		4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA
chipseq_peak_958	chr1	158124894	158125464	+	0	NA	Intergenic	Intergenic	231081	NM_207583	240843	Mm.329579	NM_207583	ENSMUSG00000004031	Brinp2	6430517E21Rik|BB361039|Fam5b|mKIAA1747	bone morphogenic protein/retinoic acid inducible neural-specific 2	protein-coding
chipseq_peak_6101	chr16	89569098	89569600	+	0	NA	TTS (NM_001113406)	TTS (NM_001113406)	1834	NM_001113406	16693	Mm.310906	NM_001113406	ENSMUSG00000091212	Krtap11-1	AA162070|AA589467|AV018433|Hacl1|KAP11.1|PRED29	keratin associated protein 11-1	protein-coding
chipseq_peak_11024	chr5	131793902	131795370	+	0	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	-85633	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_10730	chr5	82441256	82441729	+	0	NA	Intergenic	Intergenic	357573	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
chipseq_peak_12777	chr8	41239071	41239636	+	0	NA	promoter-TSS (NM_023662)	promoter-TSS (NM_023662)	-406	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding
chipseq_peak_5571	chr16	28374641	28375304	+	0	NA	intron (NM_183064, intron 2 of 4)	intron (NM_183064, intron 2 of 4)	71103	NM_001276420	14167	Mm.7996	NM_010199		Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding
chipseq_peak_3650	chr13	57778908	57779323	+	0	NA	intron (NM_001166464, intron 2 of 10)	intron (NM_001166464, intron 2 of 10)	129217	NM_001166464	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding
chipseq_peak_6391	chr17	68848684	68849435	+	0	NA	Intergenic	Intergenic	11923	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding
chipseq_peak_12358	chr7	92356527	92356999	+	0	NA	intron (NM_011807, intron 14 of 22)	MLT1J|LTR|ERVL-MaLR	121793	NM_001243047	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_12743	chr8	37048874	37050924	+	0	NA	Intergenic	Intergenic	-25661	NR_126063	414128	Mm.450976	NR_126063		G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA
chipseq_peak_13249	chr8	125901056	125902335	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-3378	NM_175561	270109	Mm.145535	NM_175561	ENSMUSG00000060212	Pcnxl2	A830048P05|AU067631|E330039K12Rik|mKIAA0435	pecanex-like 2 (Drosophila)	protein-coding
chipseq_peak_8610	chr3	38331214	38332181	+	0	NA	Intergenic	Intergenic	-123578	NR_040541	71342	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA
chipseq_peak_5546	chr16	25039518	25040461	+	0	NA	Intergenic	Intergenic	-19650	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA
chipseq_peak_7775	chr2	59034142	59034863	+	0	NA	Intergenic	L1MC4|LINE|L1	-15896	NM_001001178	227933	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09	coiled-coil domain containing 148	protein-coding
chipseq_peak_4641	chr14	108453654	108454086	+	0	NA	Intergenic	Lx5|LINE|L1	460369	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_13872	chr9	108723928	108726449	+	0	NA	intron (NM_008924, intron 4 of 10)	RLTR20C1_MM|LTR|ERVK	33045	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding
chipseq_peak_2326	chr11	42857647	42858372	+	0	NA	Intergenic	Intergenic	-291868	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding
chipseq_peak_5837	chr16	63279182	63279912	+	0	NA	Intergenic	Intergenic	425240	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
chipseq_peak_7541	chr2	34225493	34226306	+	0	NA	intron (NM_001290576, intron 2 of 7)	intron (NM_001290576, intron 2 of 7)	-118164	NR_130173	329387	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA
chipseq_peak_7647	chr2	44926268	44928825	+	0	NA	Intergenic	CpG	-65924	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_12758	chr8	39008424	39009091	+	0	NA	intron (NM_030254, intron 1 of 7)	intron (NM_030254, intron 1 of 7)	2890	NM_030254	80286	Mm.272722	NM_030254		Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding
chipseq_peak_10874	chr5	107144291	107144731	+	0	NA	intron (NM_011578, intron 7 of 16)	intron (NM_011578, intron 7 of 16)	145084	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding
chipseq_peak_12994	chr8	72903152	72903466	+	0	NA	intron (NM_010687, intron 7 of 14)	intron (NM_010687, intron 7 of 14)	-113203	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA
chipseq_peak_1206	chr1	193671091	193672004	+	0	NA	Intergenic	Intergenic	-164017	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA
chipseq_peak_9890	chr4	72524008	72524864	+	0	NA	Intergenic	Intergenic	323192	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA
chipseq_peak_12444	chr7	112233388	112233965	+	0	NA	intron (NM_001193305, intron 1 of 25)	intron (NM_001193305, intron 1 of 25)	7840	NM_001193305	320878	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
chipseq_peak_153	chr1	29216776	29217945	+	0	NA	Intergenic	Intergenic	-204128	NR_105760	102465174		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA
chipseq_peak_9093	chr3	114032420	114032738	+	0	NA	intron (NM_007729, intron 1 of 66)	intron (NM_007729, intron 1 of 66)	2039	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding
chipseq_peak_13002	chr8	76130812	76131138	+	0	NA	Intergenic	Intergenic	682281	NM_027944	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding
chipseq_peak_10840	chr5	100187476	100188235	+	0	NA	Intergenic	Intergenic	-22837	NR_040679	69571	Mm.396412	NR_040679	ENSMUSG00000100157	2310034O05Rik	-	RIKEN cDNA 2310034O05 gene	ncRNA
chipseq_peak_9404	chr3	154668568	154668805	+	0	NA	Intergenic	Intergenic	-42447	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
chipseq_peak_953	chr1	157299674	157299981	+	0	NA	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-112525	NR_027984	69953	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA
chipseq_peak_4301	chr14	52026266	52026755	+	0	NA	Intergenic	Intergenic	-5777	NM_027248	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding
chipseq_peak_10271	chr5	10489508	10490182	+	0	NA	Intergenic	Intergenic	-375184	NR_003596	623849	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo
chipseq_peak_12756	chr8	38927493	38928453	+	0	NA	Intergenic	MIR|SINE|MIR	-77894	NM_030254	80286	Mm.272722	NM_030254		Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding
chipseq_peak_4365	chr14	64587031	64588437	+	0	NA	promoter-TSS (NR_040709)	promoter-TSS (NR_040709)	-381	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA
chipseq_peak_9645	chr4	26934116	26934794	+	0	NA	Intergenic	AmnSINE2|SINE|Deu	-229006	NR_040656	75360	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA
chipseq_peak_12154	chr7	57778344	57780770	+	0	NA	intron (NM_001038701, intron 4 of 8)	intron (NM_001038701, intron 4 of 8)	188384	NM_008071	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding
chipseq_peak_8572	chr3	29666638	29667321	+	0	NA	intron (NM_001167748, intron 8 of 12)	intron (NM_001167748, intron 8 of 12)	30235	NR_105796	102466637		NR_105796	ENSMUSG00000098315	Mir21b	Gm27951|mmu-mir-21b	microRNA 21b	ncRNA
chipseq_peak_3084	chr12	66915212	66915513	+	0	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	307187	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_2072	chr10	124332530	124333179	+	0	NA	Intergenic	B1F|SINE|Alu	-136220	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo
chipseq_peak_8414	chr2	178454717	178455501	+	0	NA	intron (NM_001291189, intron 3 of 13)	intron (NM_001291189, intron 3 of 13)	24594	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding
chipseq_peak_9720	chr4	34976325	34976709	+	0	NA	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-65036	NR_040652	73696	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA
chipseq_peak_8150	chr2	124068439	124068791	+	0	NA	Intergenic	Intergenic	-21354	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
chipseq_peak_3413	chr13	9065267	9066617	+	0	NA	Intergenic	Intergenic	-27939	NM_001311117	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding
chipseq_peak_2839	chr12	35831294	35831538	+	0	NA	Intergenic	Intergenic	-94205	NM_207531	403205	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding
chipseq_peak_2841	chr12	35853083	35854102	+	0	NA	Intergenic	Intergenic	-72029	NM_207531	403205	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding
chipseq_peak_7804	chr2	62373568	62374773	+	0	NA	intron (NM_010074, intron 9 of 25)	intron (NM_010074, intron 9 of 25)	38061	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding
chipseq_peak_14057	chrX	103839064	103839495	+	0	NA	Intergenic	Lx9|LINE|L1	-17291	NM_009197	20502	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding
chipseq_peak_1293	chr10	15300167	15300774	+	0	NA	Intergenic	Intergenic	-491307	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA
chipseq_peak_1965	chr10	109765565	109766036	+	0	NA	intron (NM_001081035, intron 15 of 38)	intron (NM_001081035, intron 15 of 38)	234419	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding
chipseq_peak_6623	chr18	19852255	19852880	+	0	NA	Intergenic	Intergenic	149530	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_4507	chr14	88507998	88509130	+	0	NA	Intergenic	Intergenic	-37168	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_7696	chr2	50654597	50655450	+	0	NA	Intergenic	MER130|Unknown|Unknown	-254661	NR_033595	227885	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	OTTMUSG00000012426	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo
chipseq_peak_6417	chr17	72970362	72970866	+	0	NA	Intergenic	Intergenic	52309	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding
chipseq_peak_12901	chr8	56875022	56875652	+	0	NA	Intergenic	L1MEj|LINE|L1	324203	NM_015791	50753	Mm.251174	NM_015791		Fbxo8	Fbx8	F-box protein 8	protein-coding
chipseq_peak_13096	chr8	96585888	96586782	+	0	NA	Intergenic	Intergenic	-40362	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_8550	chr3	27765826	27766093	+	0	NA	Intergenic	Intergenic	-55520	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding
chipseq_peak_14004	chrX	57303034	57303550	+	0	NA	intron (NM_152801, intron 3 of 21)	intron (NM_152801, intron 3 of 21)	35437	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding
chipseq_peak_10208	chr4	140469879	140470436	+	0	NA	Intergenic	Intergenic	178599	NM_172415	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding
chipseq_peak_10403	chr5	38868332	38870931	+	0	NA	intron (NM_013748, intron 1 of 18)	intron (NM_013748, intron 1 of 18)	7062	NM_013748	27278	Mm.440845	NM_013748	ENSMUSG00000039315	Clnk	MIST	cytokine-dependent hematopoietic cell linker	protein-coding
chipseq_peak_12839	chr8	49170577	49171246	+	0	NA	Intergenic	Intergenic	-496221	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_1992	chr10	111503204	111503676	+	0	NA	Intergenic	Intergenic	2652	NR_033603	382421	Mm.245643	NR_033603		Gm5176	EG382421	high mobility group box 2 pseudogene	pseudo
chipseq_peak_6774	chr18	42625507	42626194	+	0	NA	Intergenic	Intergenic	-46198	NM_181543	240239	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding
chipseq_peak_8718	chr3	53683875	53684541	+	0	NA	Intergenic	Intergenic	-26853	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding
chipseq_peak_9118	chr3	117409342	117411020	+	0	NA	Intergenic	B3A|SINE|B2	-49305	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding
chipseq_peak_8431	chr3	5223503	5228082	+	0	NA	intron (NM_030708, intron 1 of 10)	intron (NM_030708, intron 1 of 10)	-4969	NR_045905	72608	Mm.384359	NR_045905		2700069I18Rik	-	RIKEN cDNA 2700069I18 gene	ncRNA
chipseq_peak_12871	chr8	54805873	54806742	+	0	NA	intron (NM_001253754, intron 1 of 6)	intron (NM_001253754, intron 1 of 6)	26873	NM_001253754	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_2618	chr11	117409688	117410512	+	0	NA	Intergenic	Intergenic	-4289	NR_132097	105827746	Mm.388009	NR_132097		Gm11729	OTTMUSG00000003784	predicted gene 11729	ncRNA
chipseq_peak_9086	chr3	112942069	112942421	+	0	NA	Intergenic	Intergenic	214482	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding
chipseq_peak_5139	chr15	53619961	53620303	+	0	NA	intron (NM_177225, intron 4 of 4)	MER68|LTR|ERVL	-273949	NM_010162	14042	Mm.309395	NM_010162		Ext1	AA409028	exostoses (multiple) 1	protein-coding
chipseq_peak_10313	chr5	16113139	16115643	+	0	NA	intron (NM_009784, intron 3 of 37)	intron (NM_009784, intron 3 of 37)	179700	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_4527	chr14	90758857	90759365	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	632220	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
chipseq_peak_6663	chr18	23668034	23668314	+	0	NA	Intergenic	Intergenic	84131	NR_126066	100502834	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	OTTMUSG00000028454	predicted gene 15972	ncRNA
chipseq_peak_10577	chr5	63100561	63100838	+	0	NA	Intergenic	Intergenic	286876	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding
chipseq_peak_7218	chr19	31395985	31396529	+	0	NA	intron (NM_011160, intron 2 of 17)	intron (NM_011160, intron 2 of 17)	-179861	NR_002849	78103	Mm.445198	NR_002849		8430431K14Rik	-	RIKEN cDNA 8430431K14 gene	ncRNA
chipseq_peak_1263	chr10	10408263	10408588	+	0	NA	intron (NM_001127353, intron 13 of 36)	intron (NM_001127353, intron 13 of 36)	63889	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding
chipseq_peak_149	chr1	28349311	28349788	+	0	NA	Intergenic	Intergenic	430703	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding
chipseq_peak_1907	chr10	104798729	104799302	+	0	NA	Intergenic	Intergenic	511746	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA
chipseq_peak_10706	chr5	80120783	80122029	+	0	NA	Intergenic	Intergenic	-605502	NR_035474	100316701		NR_035474	ENSMUSG00000089570	Mir669m-1	mmu-mir-669m-1	microRNA 669m-1	ncRNA
chipseq_peak_9656	chr4	28142966	28143642	+	0	NA	Intergenic	Intergenic	-669827	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_7201	chr19	28692156	28692889	+	0	NA	intron (NR_045330, intron 3 of 4)	intron (NR_045330, intron 3 of 4)	-12445	NM_001305671	226075	Mm.223508	NM_175459		Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding
chipseq_peak_10034	chr4	90477442	90477846	+	0	NA	Intergenic	Intergenic	-116330	NR_033610	619842	Mm.484218	NR_033610	ENSMUSG00000080756	Gm12633	OTTMUSG00000007790	zinc finger protein 352 pseudogene	pseudo
chipseq_peak_5979	chr16	74456314	74457315	+	0	NA	Intergenic	Intergenic	-45902	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_2128	chr11	10141964	10142832	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	950456	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
chipseq_peak_3438	chr13	16196443	16197095	+	0	NA	Intergenic	Intergenic	182294	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_4352	chr14	64345566	64346450	+	0	NA	intron (NM_001253712, intron 1 of 5)	intron (NM_001253712, intron 1 of 5)	70948	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_6973	chr18	69399219	69399744	+	0	NA	intron (NM_001083967, intron 3 of 19)	intron (NM_001083967, intron 3 of 19)	53760	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
chipseq_peak_6748	chr18	36142657	36144399	+	0	NA	intron (NM_001167891, intron 1 of 9)	MER44D|DNA|TcMar-Tigger	37325	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA
chipseq_peak_9200	chr3	124075485	124076598	+	0	NA	Intergenic	Intergenic	-244996	NM_146140	229801	Mm.165810	NM_146140		Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding
chipseq_peak_8436	chr3	7428209	7429142	+	0	NA	intron (NM_008862, intron 1 of 2)	Charlie1a|DNA|hAT-Charlie	62071	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding
chipseq_peak_12167	chr7	62400070	62400527	+	0	NA	Intergenic	Intergenic	19841	NM_011746	22652	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding
chipseq_peak_1785	chr10	91387305	91387889	+	0	NA	Intergenic	Intergenic	-215978	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
chipseq_peak_9420	chr3	156118955	156120756	+	0	NA	Intergenic	Intergenic	143501	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
chipseq_peak_5432	chr15	95574630	95575039	+	0	NA	Intergenic	Intergenic	-46582	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding
chipseq_peak_44	chr1	14129353	14130439	+	0	NA	Intergenic	Intergenic	180303	NM_001252192	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	eyes absent 1 homolog (Drosophila)	protein-coding
chipseq_peak_10589	chr5	64022858	64023342	+	0	NA	Intergenic	Intergenic	-21873	NR_045384	74757	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA
chipseq_peak_3626	chr13	51437264	51438106	+	0	NA	intron (NM_009167, intron 11 of 11)	intron (NM_009167, intron 11 of 11)	29067	NM_010101	13610	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding
chipseq_peak_3938	chr13	98755071	98755603	+	0	NA	intron (NM_172591, intron 12 of 25)	intron (NM_172591, intron 12 of 25)	60112	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding
chipseq_peak_2076	chr10	124795279	124797606	+	0	NA	Intergenic	Intergenic	327368	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo
chipseq_peak_3539	chr13	38354310	38354910	+	0	NA	intron (NM_007556, intron 1 of 6)	L1MC1|LINE|L1	8894	NM_007556	12161	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding
chipseq_peak_3112	chr12	69756709	69757281	+	0	NA	intron (NM_183294, intron 5 of 9)	intron (NM_183294, intron 5 of 9)	6949	NR_030450	751538		NR_030450	ENSMUSG00000076065	Mir681	Mirn681|mmu-mir-681	microRNA 681	ncRNA
chipseq_peak_12738	chr8	36361403	36362278	+	0	NA	Intergenic	Intergenic	-112324	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding
chipseq_peak_12729	chr8	34581302	34581769	+	0	NA	Intergenic	Intergenic	58781	NR_040706	330734	Mm.149998	NR_040706		B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA
chipseq_peak_4361	chr14	64501222	64502099	+	0	NA	Intergenic	Intergenic	-45757	NM_026322	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_4786	chr15	9746887	9747419	+	0	NA	intron (NM_177123, intron 1 of 17)	intron (NM_177123, intron 1 of 17)	1715	NM_001305044	320277	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding
chipseq_peak_800	chr1	131527605	131527953	+	0	NA	promoter-TSS (NM_175382)	promoter-TSS (NM_175382)	-210	NM_175382	108900	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding
chipseq_peak_8998	chr3	85734677	85736595	+	0	NA	intron (NM_172682, intron 2 of 11)	CT-rich|Low_complexity|Low_complexity	10573	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding
chipseq_peak_505	chr1	71721869	71723403	+	0	NA	Intergenic	Intergenic	69301	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA
chipseq_peak_3729	chr13	77982608	77982995	+	0	NA	intron (NM_001163419, intron 7 of 9)	intron (NM_001163419, intron 7 of 9)	-42101	NM_029315	75507	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding
chipseq_peak_11786	chr6	104318124	104319222	+	0	NA	Intergenic	Intergenic	-174371	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_5223	chr15	64402783	64403609	+	0	NA	Intergenic	Intergenic	-20277	NM_001276461	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding
chipseq_peak_13348	chr9	23580040	23582401	+	0	NA	Intergenic	Intergenic	358144	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding
chipseq_peak_4123	chr13	118980529	118981481	+	0	NA	Intergenic	Intergenic	266306	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding
chipseq_peak_1454	chr10	36557493	36558147	+	0	NA	intron (NM_001253355, intron 2 of 5)	intron (NM_001253355, intron 2 of 5)	51013	NM_001081208	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chipseq_peak_2800	chr12	31826471	31827022	+	0	NA	intron (NM_001163126, intron 11 of 22)	intron (NM_001163126, intron 11 of 22)	-112820	NM_175191	73010	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding
chipseq_peak_1244	chr10	8803139	8803459	+	0	NA	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	82771	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding
chipseq_peak_7721	chr2	54323469	54323947	+	0	NA	Intergenic	UCON2|Unknown|Unknown	-112679	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
chipseq_peak_9566	chr4	17943872	17944468	+	0	NA	intron (NM_019724, intron 1 of 9)	intron (NM_019724, intron 1 of 9)	90688	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_8859	chr3	70307330	70307993	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	300048	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1 homolog (zebrafish)	protein-coding
chipseq_peak_7149	chr19	23360485	23361831	+	0	NA	intron (NM_174857, intron 6 of 13)	intron (NM_174857, intron 6 of 13)	87164	NM_174857	71738	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding
chipseq_peak_8938	chr3	80566785	80568024	+	0	NA	Intergenic	B3A|SINE|B2	235387	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_9833	chr4	58469955	58470610	+	0	NA	intron (NM_001290486, intron 2 of 2)	intron (NM_001290486, intron 2 of 2)	29121	NM_001290486	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding
chipseq_peak_9486	chr4	8421176	8422003	+	0	NA	Intergenic	Intergenic	-114055	NM_021518	59021	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding
chipseq_peak_4962	chr15	31627573	31627927	+	0	NA	Intergenic	Intergenic	25634	NM_026546	68073	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding
chipseq_peak_11049	chr5	133402716	133403346	+	0	NA	Intergenic	Intergenic	-696717	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
chipseq_peak_13826	chr9	103585006	103585394	+	0	NA	intron (NM_178638, intron 3 of 5)	intron (NM_178638, intron 3 of 5)	28110	NR_040764	319215	Mm.425597	NR_040764	ENSMUSG00000099616	4932413F04Rik	-	RIKEN cDNA 4932413F04 gene	ncRNA
chipseq_peak_13983	chrX	42519389	42519805	+	0	NA	intron (NM_011364, intron 2 of 3)	intron (NM_011364, intron 2 of 3)	14275	NM_001313691	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding
chipseq_peak_11319	chr6	29755968	29756420	+	0	NA	intron (NM_176996, intron 6 of 11)	intron (NM_176996, intron 6 of 11)	-12249	NM_001171000	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding
chipseq_peak_1994	chr10	111763214	111763795	+	0	NA	Intergenic	Intergenic	110872	NR_046029	629206	Mm.391444	NR_046029		Gm20758	-	predicted gene, 20758	ncRNA
chipseq_peak_8275	chr2	142058213	142058736	+	0	NA	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	842990	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_7305	chr19	53948295	53949216	+	0	NA	intron (NM_019658, intron 1 of 8)	intron (NM_019658, intron 1 of 8)	3879	NM_019658	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding
chipseq_peak_12927	chr8	60005817	60008895	+	0	NA	Intergenic	Lx4B|LINE|L1	181707	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
chipseq_peak_2338	chr11	47343491	47344040	+	0	NA	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	35537	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding
chipseq_peak_269	chr1	41705623	41705984	+	0	NA	Intergenic	Intergenic	-524551	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_7616	chr2	44028120	44030501	+	0	NA	intron (NM_001301832, intron 7 of 14)	intron (NM_001301832, intron 7 of 14)	36014	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_12650	chr8	15648429	15649172	+	0	NA	Intergenic	Intergenic	520038	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_3459	chr13	18060357	18060666	+	0	NA	Intergenic	Intergenic	39691	NR_046032	73992	Mm.159110	NR_046032		4930448F12Rik	-	RIKEN cDNA 4930448F12 gene	ncRNA
chipseq_peak_7637	chr2	44523651	44524561	+	0	NA	Intergenic	Intergenic	337516	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
chipseq_peak_1127	chr1	178847407	178847910	+	0	NA	intron (NM_001161665, intron 5 of 14)	intron (NM_001161665, intron 5 of 14)	318533	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding
chipseq_peak_3671	chr13	59563612	59564413	+	0	NA	Intergenic	Intergenic	-6665	NM_001048008	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding
chipseq_peak_13230	chr8	118789687	118790075	+	0	NA	intron (NM_019707, intron 4 of 13)	L1MC3|LINE|L1	506270	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding
chipseq_peak_13740	chr9	86716590	86716957	+	0	NA	Intergenic	Intergenic	-20859	NM_008615	17436	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding
chipseq_peak_9149	chr3	118465690	118466033	+	0	NA	Intergenic	Intergenic	32004	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA
chipseq_peak_10402	chr5	38372270	38372694	+	0	NA	intron (NM_145559, intron 9 of 10)	intron (NM_145559, intron 9 of 10)	28093	NR_046191	78172	Mm.243835	NR_046191	ENSMUSG00000106932	4930487D11Rik	-	RIKEN cDNA 4930487D11 gene	ncRNA
chipseq_peak_3033	chr12	59343862	59344248	+	0	NA	Intergenic	Tigger10|DNA|TcMar-Tigger	-124572	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_12877	chr8	54861528	54861874	+	0	NA	intron (NM_001253754, intron 1 of 6)	intron (NM_001253754, intron 1 of 6)	82267	NM_001253754	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_13214	chr8	114306289	114306732	+	0	NA	intron (NM_173016, intron 7 of 8)	intron (NM_173016, intron 7 of 8)	44968	NR_045831	71122	Mm.437539	NR_045831		4933408N05Rik	-	RIKEN cDNA 4933408N05 gene	ncRNA
chipseq_peak_10783	chr5	89561293	89561963	+	0	NA	intron (NM_133192, intron 1 of 3)	intron (NM_133192, intron 1 of 3)	34199	NM_133192	104443	Mm.447881	NM_133192	ENSMUSG00000035528	Npffr2	Gpr74|HG31|NPFF2	neuropeptide FF receptor 2	protein-coding
chipseq_peak_2059	chr10	123437650	123438036	+	0	NA	intron (NM_182807, intron 2 of 5)	intron (NM_182807, intron 2 of 5)	173767	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_13696	chr9	77339610	77340961	+	0	NA	intron (NM_027150, intron 1 of 7)	intron (NM_027150, intron 1 of 7)	7585	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding
chipseq_peak_9195	chr3	123637824	123639742	+	0	NA	intron (NR_121616, intron 2 of 13)	intron (NR_121616, intron 2 of 13)	-19333	NM_001293682	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding
chipseq_peak_3312	chr12	99182333	99182702	+	0	NA	Intergenic	Intergenic	-19709	NR_038130	67639	Mm.87374	NR_038130		4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA
chipseq_peak_13043	chr8	84646979	84648394	+	0	NA	Intergenic	Intergenic	15166	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding
chipseq_peak_8218	chr2	136673867	136674834	+	0	NA	Intergenic	Intergenic	-39100	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding
chipseq_peak_4141	chr14	11761257	11761596	+	0	NA	intron (NM_008981, intron 2 of 29)	intron (NM_008981, intron 2 of 29)	207873	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding
chipseq_peak_13828	chr9	103687099	103687554	+	0	NA	intron (NM_178638, intron 2 of 5)	intron (NM_178638, intron 2 of 5)	74511	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding
chipseq_peak_7725	chr2	55228317	55228854	+	0	NA	Intergenic	Intergenic	-207385	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
chipseq_peak_141	chr1	27608694	27609144	+	0	NA	Intergenic	Intergenic	-921459	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding
chipseq_peak_10228	chr4	151438310	151439450	+	0	NA	intron (NM_001081557, intron 5 of 23)	intron (NM_001081557, intron 5 of 23)	349310	NM_001308446	105704528	Mm.415128	NM_001308446		Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding
chipseq_peak_10913	chr5	112069630	112070262	+	0	NA	Intergenic	L1ME3Cz|LINE|L1	-136817	NR_045378	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA
chipseq_peak_8369	chr2	163332555	163333070	+	0	NA	Intergenic	L1ME2|LINE|L1	65161	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding
chipseq_peak_4263	chr14	38637098	38638168	+	0	NA	intron (NM_008734, intron 3 of 9)	intron (NM_008734, intron 3 of 9)	-260669	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
chipseq_peak_10796	chr5	90155787	90157075	+	0	NA	Intergenic	Intergenic	67565	NM_001033310	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding
chipseq_peak_4283	chr14	48091344	48091762	+	0	NA	Intergenic	Intergenic	-29316	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding
chipseq_peak_12860	chr8	54232969	54233680	+	0	NA	Intergenic	Intergenic	155792	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
chipseq_peak_8823	chr3	66934019	66934836	+	0	NA	Intergenic	Intergenic	44384	NM_001302358	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding
chipseq_peak_8934	chr3	80495764	80497010	+	0	NA	Intergenic	Intergenic	306404	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_9512	chr4	13145419	13147566	+	0	NA	Intergenic	Intergenic	239655	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_13389	chr9	27892323	27892938	+	0	NA	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	101361	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_7720	chr2	54283963	54284224	+	0	NA	Intergenic	Intergenic	-152294	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
chipseq_peak_14133	chrX	164578886	164579223	+	0	NA	Intergenic	Intergenic	81151	NM_027027	69299	Mm.79031	NM_027027	ENSMUSG00000031384	Asb9	1700011M07Rik	ankyrin repeat and SOCS box-containing 9	protein-coding
chipseq_peak_10389	chr5	34488907	34489363	+	0	NA	Intergenic	Intergenic	24844	NM_139064	231130	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding
chipseq_peak_6883	chr18	56195365	56196245	+	0	NA	Intergenic	Intergenic	-236327	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
chipseq_peak_7739	chr2	56539791	56540218	+	0	NA	Intergenic	Intergenic	-245807	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
chipseq_peak_13334	chr9	17293939	17295047	+	0	NA	Intergenic	Intergenic	-916262	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT tumor suppressor homolog 3 (Drosophila)	protein-coding
chipseq_peak_10225	chr4	150449931	150450323	+	0	NA	intron (NM_001085492, intron 4 of 22)	intron (NM_001085492, intron 4 of 22)	168211	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding
chipseq_peak_10468	chr5	45917954	45918428	+	0	NA	Intergenic	Intergenic	14218	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA
chipseq_peak_8199	chr2	134996841	134997524	+	0	NA	intron (NM_019677, intron 3 of 32)	intron (NM_019677, intron 3 of 32)	211018	NM_019677	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding
chipseq_peak_1810	chr10	94595609	94596066	+	0	NA	Intergenic	Intergenic	-9638	NR_106070	102466817		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA
chipseq_peak_5278	chr15	68496370	68496915	+	0	NA	Intergenic	Intergenic	-155353	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA
chipseq_peak_1106	chr1	177187816	177189223	+	0	NA	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	60248	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_4570	chr14	96526058	96526828	+	0	NA	Intergenic	Intergenic	-7409	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
chipseq_peak_14076	chrX	134648181	134648461	+	0	NA	Intergenic	Intergenic	38141	NR_045454	77983	Mm.153204	NR_045454	ENSMUSG00000087024	B230119M05Rik	-	RIKEN cDNA B230119M05 gene	ncRNA
chipseq_peak_394	chr1	56402870	56404337	+	0	NA	Intergenic	Intergenic	233848	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_11287	chr6	23967001	23967371	+	0	NA	Intergenic	Intergenic	2874	NM_207022	387347	Mm.377909	NM_207022	ENSMUSG00000043865	Tas2r118	Gm465|T2R18|Tas2r16|Tas2r18|mGR18|mt2r40	taste receptor, type 2, member 118	protein-coding
chipseq_peak_10458	chr5	45181912	45183173	+	0	NA	intron (NR_131933, intron 4 of 5)	Charlie20a|DNA|hAT-Charlie	216341	NR_073013	75783	Mm.218472	NR_073013	ENSMUSG00000062496	4930431F12Rik	-	RIKEN cDNA 4930431F12 gene	ncRNA
chipseq_peak_5323	chr15	74379126	74379883	+	0	NA	Intergenic	Intergenic	-136692	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding
chipseq_peak_704	chr1	109836120	109837666	+	0	NA	Intergenic	Intergenic	-146007	NM_001316743	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding
chipseq_peak_10653	chr5	71986829	71987605	+	0	NA	intron (NM_008069, intron 4 of 8)	intron (NM_008069, intron 4 of 8)	180966	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding
chipseq_peak_6174	chr17	9002622	9002953	+	0	NA	intron (NM_025851, intron 7 of 9)	intron (NM_025851, intron 7 of 9)	14454	NM_025851	66931	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding
chipseq_peak_5532	chr16	23097561	23097838	+	0	NA	Intergenic	Intergenic	-9769	NM_001123037	13682	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
chipseq_peak_9239	chr3	133694029	133694768	+	0	NA	Intergenic	Intergenic	-150008	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding
chipseq_peak_1782	chr10	91191794	91192604	+	0	NA	Intergenic	L1ME4b|LINE|L1	-20580	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
chipseq_peak_13863	chr9	106664298	106664868	+	0	NA	intron (NR_104459, intron 3 of 4)	intron (NR_104459, intron 3 of 4)	-8474	NM_001160353	108068	Mm.410822	NM_001160353		Grm2	4930441L02Rik|Gprc1b|mGluR2|mGluR7	glutamate receptor, metabotropic 2	protein-coding
chipseq_peak_4865	chr15	19518807	19519596	+	0	NA	Intergenic	Intergenic	698872	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_311	chr1	47606202	47607132	+	0	NA	Intergenic	Intergenic	-139542	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_1288	chr10	14210516	14211791	+	0	NA	Intergenic	Intergenic	244774	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
chipseq_peak_9246	chr3	133967371	133968849	+	0	NA	Intergenic	Intergenic	-268385	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding
chipseq_peak_13000	chr8	76004787	76005155	+	0	NA	Intergenic	Intergenic	556277	NM_027944	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding
chipseq_peak_8124	chr2	115960717	115961275	+	0	NA	intron (NM_001159567, intron 8 of 12)	intron (NM_001159567, intron 8 of 12)	103625	NM_001159569	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding
chipseq_peak_5271	chr15	67977087	67977738	+	0	NA	Intergenic	Intergenic	281444	NM_198644	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
chipseq_peak_5488	chr16	6905563	6906365	+	0	NA	intron (NM_021477, intron 5 of 16)	intron (NM_021477, intron 5 of 16)	-163871	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_5728	chr16	49169077	49169409	+	0	NA	intron (NM_001166210, intron 33 of 40)	MLT1B|LTR|ERVL-MaLR	111757	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding
chipseq_peak_3191	chr12	77425728	77426873	+	0	NA	intron (NR_045554, intron 8 of 11)	intron (NR_045554, intron 8 of 11)	16159	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding
chipseq_peak_7223	chr19	33240520	33240867	+	0	NA	intron (NM_001167818, intron 4 of 6)	intron (NM_001167818, intron 4 of 6)	151602	NM_001146342	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding
chipseq_peak_11840	chr6	110578933	110579571	+	0	NA	Intergenic	Intergenic	-66346	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_516	chr1	72372448	72373596	+	0	NA	intron (NM_009533, intron 16 of 20)	intron (NM_009533, intron 16 of 20)	65601	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding
chipseq_peak_1444	chr10	33653031	33653861	+	0	NA	Intergenic	B3|SINE|B2	-28846	NM_175448	215890	Mm.94461	NM_175448	ENSMUSG00000019785	Clvs2	A330019N05Rik|Rlbp1l2	clavesin 2	protein-coding
chipseq_peak_2045	chr10	121931979	121932358	+	0	NA	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	115147	NM_001242411	117600	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding
chipseq_peak_8085	chr2	111058588	111058927	+	0	NA	Intergenic	Intergenic	-108513	NM_001128103	228432	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding
chipseq_peak_6823	chr18	51789277	51790324	+	0	NA	Intergenic	Intergenic	333746	NR_029788	723830		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA
chipseq_peak_6198	chr17	14588266	14588804	+	0	NA	Intergenic	Intergenic	105727	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding
chipseq_peak_13770	chr9	94114789	94115146	+	0	NA	Intergenic	ORR1E-int|LTR|ERVL-MaLR	423114	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
chipseq_peak_3642	chr13	55100144	55100686	+	0	NA	promoter-TSS (NM_001293660)	promoter-TSS (NM_001293660)	-115	NR_121592	20184	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding
chipseq_peak_10923	chr5	114163301	114163707	+	0	NA	Intergenic	Intergenic	-2014	NM_133904	100705	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding
chipseq_peak_8151	chr2	124101114	124102042	+	0	NA	intron (NM_001290997, intron 1 of 20)	intron (NM_001290997, intron 1 of 20)	11609	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
chipseq_peak_12751	chr8	38335974	38336560	+	0	NA	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	-84065	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA
chipseq_peak_7711	chr2	53204503	53204944	+	0	NA	intron (NM_022989, intron 3 of 3)	intron (NM_022989, intron 3 of 3)	12639	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding
chipseq_peak_3184	chr12	75624445	75624856	+	0	NA	Intergenic	Intergenic	7099	NR_038063	665931	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo
chipseq_peak_9058	chr3	105541668	105542059	+	0	NA	intron (NM_001039347, intron 2 of 6)	intron (NM_001039347, intron 2 of 6)	83047	NM_019931	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding
chipseq_peak_13478	chr9	41413898	41414216	+	0	NA	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	37531	NR_131928	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA
chipseq_peak_2112	chr11	3741068	3741721	+	0	NA	intron (NM_152818, intron 2 of 13)	intron (NM_152818, intron 2 of 13)	-19167	NM_001302630	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding
chipseq_peak_1640	chr10	66183103	66184492	+	0	NA	Intergenic	Intergenic	38501	NR_131070	77198	Mm.107617	NR_131070		4930407I19Rik	-	RIKEN cDNA 4930407I19 gene	ncRNA
chipseq_peak_8368	chr2	163138957	163139558	+	0	NA	Intergenic	Intergenic	-49656	NM_026630	68236	Mm.33648	NM_026630		Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding
chipseq_peak_2846	chr12	36394946	36395998	+	0	NA	intron (NM_001289502, intron 2 of 8)	intron (NM_001289502, intron 2 of 8)	13325	NM_001289503	75847	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding
chipseq_peak_497	chr1	71263608	71263946	+	0	NA	intron (NM_175210, intron 43 of 52)	intron (NM_175210, intron 43 of 52)	151133	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
chipseq_peak_6873	chr18	55546540	55548634	+	0	NA	Intergenic	Intergenic	-557407	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_3323	chr12	100664825	100665808	+	0	NA	intron (NM_153587, intron 2 of 17)	Lx8|LINE|L1	59712	NM_153587	73086	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK	ribosomal protein S6 kinase, polypeptide 5	protein-coding
chipseq_peak_330	chr1	52251449	52251769	+	0	NA	Intergenic	Intergenic	-18377	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding
chipseq_peak_213	chr1	35172766	35173423	+	0	NA	Intergenic	Intergenic	323135	NM_175421	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding
chipseq_peak_9462	chr4	6600584	6601489	+	0	NA	Intergenic	Intergenic	-146765	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding
chipseq_peak_1885	chr10	101349751	101350781	+	0	NA	Intergenic	Intergenic	-331221	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
chipseq_peak_5683	chr16	43338833	43339527	+	0	NA	intron (NM_019778, intron 2 of 8)	intron (NM_019778, intron 2 of 8)	81016	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA
chipseq_peak_12147	chr7	56460185	56461885	+	0	NA	intron (NM_021879, intron 23 of 23)	Lx8|LINE|L1	221264	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p	oculocutaneous albinism II	protein-coding
chipseq_peak_12708	chr8	30232521	30233566	+	0	NA	Intergenic	Intergenic	-335352	NR_045856	71314	Mm.158666	NR_045856	ENSMUSG00000097044	4933433F19Rik	-	RIKEN cDNA 4933433F19 gene	ncRNA
chipseq_peak_257	chr1	41152457	41155494	+	0	NA	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	27277	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_10134	chr4	111467351	111468095	+	0	NA	intron (NM_030231, intron 6 of 12)	intron (NM_030231, intron 6 of 12)	52717	NR_033793	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding
chipseq_peak_9037	chr3	101194585	101195143	+	0	NA	Intergenic	Intergenic	-84698	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding
chipseq_peak_7285	chr19	50077119	50077907	+	0	NA	Intergenic	Intergenic	601133	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_9285	chr3	140029874	140030695	+	0	NA	Intergenic	Intergenic	2035	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA
chipseq_peak_2109	chr10	128549221	128549656	+	0	NA	promoter-TSS (NM_018860)	promoter-TSS (NM_018860)	-270	NM_018860	67945	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding
chipseq_peak_13687	chr9	76331108	76331486	+	0	NA	Intergenic	Intergenic	-7719	NM_198962	387285	Mm.335300	NM_198962	ENSMUSG00000032360	Hcrtr2	OX2R|mOX2aR|mOX2bR|mOXR2	hypocretin (orexin) receptor 2	protein-coding
chipseq_peak_13472	chr9	41108388	41108796	+	0	NA	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	48902	NM_176860	72828	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding
chipseq_peak_4125	chr13	119689607	119690253	+	0	NA	promoter-TSS (NM_001291439)	promoter-TSS (NM_001291439)	-421	NM_145942	208715	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding
chipseq_peak_6967	chr18	68765036	68765664	+	0	NA	Intergenic	Intergenic	25950	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA
chipseq_peak_3697	chr13	70192641	70193475	+	0	NA	Intergenic	Intergenic	-39764	NR_036596	75086	Mm.390616	NR_036596		4930520P13Rik	-	RIKEN cDNA 4930520P13 gene	ncRNA
chipseq_peak_5085	chr15	47516939	47517789	+	0	NA	Intergenic	Intergenic	894059	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA
chipseq_peak_5444	chr15	98954073	98956603	+	0	NA	Intergenic	Intergenic	-1837	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding
chipseq_peak_4999	chr15	37533808	37534431	+	0	NA	intron (NM_134094, intron 4 of 6)	intron (NM_134094, intron 4 of 6)	-74737	NM_001170867	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding
chipseq_peak_670	chr1	103784712	103785291	+	0	NA	Intergenic	Intergenic	-983818	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_3524	chr13	30014567	30015072	+	0	NA	Intergenic	L1ME4a|LINE|L1	-28756	NM_010093	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding
chipseq_peak_5057	chr15	44683441	44683998	+	0	NA	intron (NM_001285840, intron 3 of 6)	intron (NM_001285840, intron 3 of 6)	22769	NM_001285843	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_757	chr1	124790172	124790949	+	0	NA	Intergenic	Intergenic	645167	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding
chipseq_peak_12825	chr8	48376556	48377380	+	0	NA	intron (NM_011857, intron 4 of 28)	intron (NM_011857, intron 4 of 28)	266955	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding
chipseq_peak_10244	chr5	4736565	4736812	+	0	NA	Intergenic	Intergenic	21528	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled homolog 1 (Drosophila)	protein-coding
chipseq_peak_12410	chr7	100295900	100296197	+	0	NA	intron (NM_177161, intron 3 of 12)	intron (NM_177161, intron 3 of 12)	10528	NM_177161	320452	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding
chipseq_peak_5212	chr15	62904043	62904789	+	0	NA	Intergenic	Intergenic	575192	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA
chipseq_peak_9719	chr4	34549767	34550631	+	0	NA	promoter-TSS (NM_001007589)	promoter-TSS (NM_001007589)	-416	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding
chipseq_peak_5853	chr16	64163506	64164962	+	0	NA	Intergenic	Intergenic	-300077	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_9066	chr3	107127909	107128741	+	0	NA	Intergenic	MIRb|SINE|MIR	26758	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding
chipseq_peak_7813	chr2	62643417	62644189	+	0	NA	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	2452	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding
chipseq_peak_2453	chr11	81492470	81493444	+	0	NA	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	80582	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding
chipseq_peak_3349	chr12	112263242	112263991	+	0	NA	Intergenic	Intergenic	117408	NM_001097621	668303	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding
chipseq_peak_3682	chr13	68838345	68838655	+	0	NA	intron (NM_153534, intron 3 of 24)	intron (NM_153534, intron 3 of 24)	161041	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding
chipseq_peak_13116	chr8	98797422	98798045	+	0	NA	Intergenic	Intergenic	-214154	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA
chipseq_peak_13976	chrX	38456468	38456709	+	0	NA	promoter-TSS (NM_010685)	promoter-TSS (NM_010685)	-128	NM_001017959	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding
chipseq_peak_2231	chr11	28506733	28507092	+	0	NA	intron (NM_001166661, intron 2 of 3)	intron (NM_001166661, intron 2 of 3)	77412	NM_181577	216613	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding
chipseq_peak_2468	chr11	85755150	85755636	+	0	NA	intron (NM_001166642, intron 23 of 24)	intron (NM_001166642, intron 23 of 24)	5309	NR_039570	100628627		NR_039570	ENSMUSG00000093278	Mir5110	mmu-mir-5110	microRNA 5110	ncRNA
chipseq_peak_13933	chr9	116086041	116086354	+	0	NA	Intergenic	Intergenic	89166	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding
chipseq_peak_570	chr1	82879681	82880119	+	0	NA	intron (NM_001310713, intron 5 of 11)	intron (NM_001310713, intron 5 of 11)	40440	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding
chipseq_peak_3914	chr13	95871900	95872273	+	0	NA	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	19836	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding
chipseq_peak_9655	chr4	28064967	28065370	+	0	NA	Intergenic	Intergenic	-747963	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_10536	chr5	57777291	57777695	+	0	NA	intron (NM_001310608, intron 1 of 3)	intron (NM_001310608, intron 1 of 3)	59412	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding
chipseq_peak_4803	chr15	12774179	12774621	+	0	NA	Intergenic	Intergenic	50257	NM_001166360	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding
chipseq_peak_13992	chrX	49545479	49545829	+	0	NA	Intergenic	Intergenic	75204	NM_001081123	75404	Mm.44305	NM_001081123	ENSMUSG00000036198	Arhgap36	1100001E04Rik|rho-gap	Rho GTPase activating protein 36	protein-coding
chipseq_peak_775	chr1	127169499	127169918	+	0	NA	Intergenic	L1MC2|LINE|L1	-35278	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding
chipseq_peak_5467	chr16	5533071	5533645	+	0	NA	Intergenic	Intergenic	-277402	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
chipseq_peak_11170	chr6	12141323	12142277	+	0	NA	Intergenic	Intergenic	-32220	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo
chipseq_peak_5794	chr16	56188224	56189009	+	0	NA	3' UTR (NM_025483, exon 24 of 24)	3' UTR (NM_025483, exon 24 of 24)	-15697	NM_174876	224224	Mm.151998	NM_174876	ENSMUSG00000035270	Impg2	IPM200|PG10.2|Rsbp|Spacrcan	interphotoreceptor matrix proteoglycan 2	protein-coding
chipseq_peak_11557	chr6	62196490	62197176	+	0	NA	intron (NM_001164316, intron 10 of 10)	intron (NM_001164316, intron 10 of 10)	-1016023	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
chipseq_peak_13433	chr9	33167546	33168811	+	0	NA	Intergenic	L2b|LINE|L2	-239212	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA
chipseq_peak_98	chr1	22246912	22247339	+	0	NA	Intergenic	Intergenic	185718	NM_053270	116837	Mm.60061	NM_053270		Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding
chipseq_peak_1242	chr10	8653712	8654070	+	0	NA	Intergenic	Intergenic	-135066	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding
chipseq_peak_10583	chr5	63475824	63477344	+	0	NA	Intergenic	Intergenic	-172519	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding
chipseq_peak_589	chr1	87679020	87679392	+	0	NA	intron (NR_122078, intron 6 of 27)	MER34A|LTR|ERV1	58894	NR_122078	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding
chipseq_peak_2044	chr10	121652638	121653887	+	0	NA	intron (NM_177335, intron 1 of 12)	intron (NM_177335, intron 1 of 12)	11561	NM_177335	216393	Mm.119759	NM_177335		D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding
chipseq_peak_10798	chr5	91464635	91465335	+	0	NA	Intergenic	Intergenic	-52715	NM_145562	231440	Mm.5002	NM_145562		Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding
chipseq_peak_2389	chr11	67738934	67739408	+	0	NA	intron (NM_175681, intron 9 of 12)	RCHARR1|DNA|hAT-Charlie	31982	NM_175681	93896	Mm.118883	NM_175681	ENSMUSG00000049928	Glp2r	9530092J08Rik|GLP-2	glucagon-like peptide 2 receptor	protein-coding
chipseq_peak_5590	chr16	31695242	31696059	+	0	NA	intron (NR_045516, intron 4 of 24)	intron (NR_045516, intron 4 of 24)	31715	NM_001252433	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding
chipseq_peak_5339	chr15	80535759	80536462	+	0	NA	intron (NM_001163189, intron 1 of 5)	intron (NM_001163189, intron 1 of 5)	24360	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding
chipseq_peak_12457	chr7	114200628	114201208	+	0	NA	Intergenic	Intergenic	53762	NM_033370	70349	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding
chipseq_peak_8113	chr2	114590650	114591284	+	0	NA	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	63961	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
chipseq_peak_12239	chr7	75982453	75984042	+	0	NA	Intergenic	Intergenic	134909	NM_029652	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding
chipseq_peak_6598	chr18	15505282	15505496	+	0	NA	intron (NM_199055, intron 2 of 3)	intron (NM_199055, intron 2 of 3)	-94407	NM_001308641	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding
chipseq_peak_4459	chr14	80212691	80213354	+	0	NA	Intergenic	Intergenic	212720	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_5619	chr16	37704042	37705484	+	0	NA	Intergenic	Tigger10|DNA|TcMar-Tigger	-50395	NM_026610	68194	Mm.379154	NM_026610		Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding
chipseq_peak_10140	chr4	118667183	118667911	+	0	NA	Intergenic	L1MB7|LINE|L1	2028	NM_146315	18363	Mm.222846	NM_146315	ENSMUSG00000043698	Olfr62	H12|IH12|MOR258-5	olfactory receptor 62	protein-coding
chipseq_peak_9845	chr4	64123720	64124518	+	0	NA	Intergenic	Intergenic	-77104	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding
chipseq_peak_11834	chr6	109280919	109282285	+	0	NA	Intergenic	Intergenic	452961	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
chipseq_peak_7281	chr19	49563609	49565348	+	0	NA	Intergenic	Intergenic	1114168	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_11661	chr6	92663510	92663874	+	0	NA	intron (NM_001081146, intron 2 of 8)	intron (NM_001081146, intron 2 of 8)	42492	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle homolog 2 (Drosophila)	protein-coding
chipseq_peak_12129	chr7	54781512	54782718	+	0	NA	Intergenic	Intergenic	-53130	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_4822	chr15	13952227	13952657	+	0	NA	Intergenic	Intergenic	-778767	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_8163	chr2	129408416	129409231	+	0	NA	Intergenic	Intergenic	-37684	NM_008361	16176	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding
chipseq_peak_9482	chr4	7847473	7848037	+	0	NA	Intergenic	MER67A|LTR|ERV1	287067	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA
chipseq_peak_3248	chr12	88939527	88940042	+	0	NA	intron (NM_001198587, intron 3 of 19)	L1MA5A|LINE|L1	-13606	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
chipseq_peak_1791	chr10	91827165	91827561	+	0	NA	Intergenic	Intergenic	244822	NR_029812	723955		NR_029812	ENSMUSG00000065524	Mir135a-2	Mirn135a-2|mir-135a-2	microRNA 135a-2	ncRNA
chipseq_peak_13	chr1	6936108	6936618	+	0	NA	Intergenic	Intergenic	-152557	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
chipseq_peak_2019	chr10	116436701	116437091	+	0	NA	intron (NM_021452, intron 2 of 2)	intron (NM_021452, intron 2 of 2)	18775	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA
chipseq_peak_6081	chr16	85542830	85543818	+	0	NA	intron (NM_144853, intron 2 of 3)	intron (NM_144853, intron 2 of 3)	7049	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding
chipseq_peak_6354	chr17	63326226	63326987	+	0	NA	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	-13633	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA
chipseq_peak_327	chr1	51333648	51334498	+	0	NA	promoter-TSS (NR_045151)	promoter-TSS (NR_045151)	-294	NR_045151	442821	Mm.118030	NR_045151	ENSMUSG00000101799	9330175M20Rik	-	RIKEN cDNA 9330175M20 gene	ncRNA
chipseq_peak_122	chr1	25082310	25082697	+	0	NA	intron (NM_175642, intron 29 of 30)	intron (NM_175642, intron 29 of 30)	195451	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
chipseq_peak_10739	chr5	83405051	83405934	+	0	NA	Intergenic	Intergenic	-50297	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding
chipseq_peak_5426	chr15	95280865	95281355	+	0	NA	intron (NM_001289653, intron 16 of 20)	intron (NM_001289653, intron 16 of 20)	-131792	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_11787	chr6	104443632	104444196	+	0	NA	Intergenic	Intergenic	-49130	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_3392	chr13	6127212	6127649	+	0	NA	Intergenic	Intergenic	265941	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding
chipseq_peak_3661	chr13	58886893	58887403	+	0	NA	intron (NM_001282961, intron 12 of 17)	intron (NM_001282961, intron 12 of 17)	79451	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
chipseq_peak_13371	chr9	27049543	27049897	+	0	NA	intron (NM_178113, intron 9 of 35)	intron (NM_178113, intron 9 of 35)	19545	NM_178113	78658	Mm.251777	NM_178113	ENSMUSG00000035024	Ncapd3	2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056	non-SMC condensin II complex, subunit D3	protein-coding
chipseq_peak_774	chr1	127168138	127168566	+	0	NA	Intergenic	Intergenic	-36634	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding
chipseq_peak_10150	chr4	121241481	121241713	+	0	NA	Intergenic	Intergenic	-53063	NM_001081013	109263	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding
chipseq_peak_5645	chr16	40504220	40504682	+	0	NA	Intergenic	Intergenic	-1028891	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_883	chr1	143503572	143504171	+	0	NA	Intergenic	Intergenic	-136826	NM_020025	26878	Mm.285580	NM_020025		B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding
chipseq_peak_10813	chr5	97411794	97412123	+	0	NA	intron (NR_045981, intron 2 of 7)	intron (NR_045981, intron 2 of 7)	19541	NR_045981	75814	Mm.444705	NR_045981		4930467D21Rik	4930448L09Rik|BB013444	RIKEN cDNA 4930467D21 gene	ncRNA
chipseq_peak_622	chr1	95315838	95316493	+	0	NA	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	2537	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding
chipseq_peak_7309	chr19	55880546	55881737	+	0	NA	intron (NM_001142919, intron 4 of 13)	intron (NM_001142919, intron 4 of 13)	-14180	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4|mTcf-4B|mTcf-4E	transcription factor 7 like 2, T cell specific, HMG box	protein-coding
chipseq_peak_11051	chr5	133708912	133709259	+	0	NA	Intergenic	Intergenic	-390663	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
chipseq_peak_10097	chr4	104086074	104086530	+	0	NA	Intergenic	Intergenic	-281236	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
chipseq_peak_1247	chr10	9243222	9243513	+	0	NA	Intergenic	Intergenic	-357297	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding
chipseq_peak_12265	chr7	80690854	80691547	+	0	NA	Intergenic	Intergenic	-2323	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding
chipseq_peak_10211	chr4	142785109	142785630	+	0	NA	Intergenic	Intergenic	350793	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA
chipseq_peak_10463	chr5	45270668	45270934	+	0	NA	intron (NR_131933, intron 4 of 5)	L2b|LINE|L2	153599	NR_131933	52401	Mm.33854	NR_131933		D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA
chipseq_peak_10359	chr5	21983028	21983558	+	0	NA	intron (NM_001310464, intron 31 of 63)	intron (NM_001310464, intron 31 of 63)	-117689	NM_030727	80979	Mm.160370	NM_030727		Slc26a5	Pres|prestin	solute carrier family 26, member 5	protein-coding
chipseq_peak_10382	chr5	31221669	31222004	+	0	NA	Intergenic	Intergenic	-1291	NM_008014	14208	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding
chipseq_peak_12054	chr7	34773753	34774386	+	0	NA	intron (NM_175140, intron 1 of 3)	intron (NM_175140, intron 1 of 3)	38642	NM_175140	68947	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding
chipseq_peak_10836	chr5	99715127	99715644	+	0	NA	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	13675	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA
chipseq_peak_1959	chr10	109241649	109242538	+	0	NA	Intergenic	Intergenic	-231118	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding
chipseq_peak_1415	chr10	29823165	29825458	+	0	NA	Intergenic	Intergenic	-288444	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding
chipseq_peak_10317	chr5	16225044	16227019	+	0	NA	intron (NM_009784, intron 6 of 37)	intron (NM_009784, intron 6 of 37)	291340	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_5380	chr15	91314286	91316127	+	0	NA	intron (NM_001033633, intron 7 of 9)	intron (NM_001033633, intron 7 of 9)	-123399	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding
chipseq_peak_12694	chr8	28602244	28602646	+	0	NA	Intergenic	Intergenic	-517592	NR_033590	666422	Mm.484413	NR_033590		Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo
chipseq_peak_12337	chr7	91549410	91550129	+	0	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	458983	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_11680	chr6	96258658	96259523	+	0	NA	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	-92885	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo
chipseq_peak_3900	chr13	93564003	93564411	+	0	NA	Intergenic	Intergenic	-64399	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding
chipseq_peak_2884	chr12	40498084	40498476	+	0	NA	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	52227	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding
chipseq_peak_10871	chr5	106505827	106506564	+	0	NA	Intergenic	Intergenic	-48029	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding
chipseq_peak_5477	chr16	6042496	6043520	+	0	NA	intron (NM_021477, intron 1 of 16)	intron (NM_021477, intron 1 of 16)	67421	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA
chipseq_peak_11102	chr5	146571942	146572887	+	0	NA	Intergenic	Intergenic	11990	NM_008151	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding
chipseq_peak_4864	chr15	19473659	19474076	+	0	NA	Intergenic	Intergenic	653538	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_11970	chr6	143105757	143106299	+	0	NA	Intergenic	LTR107_Mam|LTR|LTR	-5876	NM_029897	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding
chipseq_peak_769	chr1	126686715	126687367	+	0	NA	intron (NM_176957, intron 2 of 12)	intron (NM_176957, intron 2 of 12)	143591	NM_176957	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding
chipseq_peak_7798	chr2	61982693	61983238	+	0	NA	Intergenic	Intergenic	-63550	NM_001242380	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding
chipseq_peak_466	chr1	67167353	67167838	+	0	NA	intron (NM_001080809, intron 15 of 37)	intron (NM_001080809, intron 15 of 37)	44568	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding
chipseq_peak_9262	chr3	136981231	136982267	+	0	NA	Intergenic	Intergenic	311683	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding
chipseq_peak_10256	chr5	6166688	6168439	+	0	NA	Intergenic	L1_Rod|LINE|L1	-418246	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding
chipseq_peak_8979	chr3	84578695	84579050	+	0	NA	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	3753	NM_001081093	99889	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding
chipseq_peak_11909	chr6	128085237	128085886	+	0	NA	intron (NM_175414, intron 1 of 8)	RCHARR1|DNA|hAT-Charlie	58017	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding
chipseq_peak_1813	chr10	95056954	95057807	+	0	NA	Intergenic	Intergenic	88445	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA
chipseq_peak_195	chr1	33126710	33127175	+	0	NA	Intergenic	L1ME2|LINE|L1	542852	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding
chipseq_peak_2168	chr11	19676463	19677003	+	0	NA	Intergenic	Intergenic	-247709	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding
chipseq_peak_1666	chr10	68282267	68282787	+	0	NA	Intergenic	Intergenic	-3801	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding
chipseq_peak_7768	chr2	58569186	58569693	+	0	NA	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	2105	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
chipseq_peak_7501	chr2	21439602	21440215	+	0	NA	intron (NM_001004761, intron 2 of 10)	intron (NM_001004761, intron 2 of 10)	72341	NM_001004761	241263	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding
chipseq_peak_1522	chr10	46185607	46186284	+	0	NA	Intergenic	Intergenic	-58803	NR_028274	100302593		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA
chipseq_peak_9787	chr4	50258934	50259859	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-413627	NM_001033351	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding
chipseq_peak_10314	chr5	16129448	16130173	+	0	NA	intron (NM_009784, intron 3 of 37)	intron (NM_009784, intron 3 of 37)	195119	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_5468	chr16	5630001	5630411	+	0	NA	Intergenic	Intergenic	-254587	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_1848	chr10	98761152	98761509	+	0	NA	Intergenic	Intergenic	-153822	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding
chipseq_peak_7206	chr19	29840679	29841086	+	0	NA	Intergenic	L1ME2|LINE|L1	-27908	NM_177721	240614	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding
chipseq_peak_3391	chr13	6114609	6115096	+	0	NA	Intergenic	Intergenic	253363	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding
chipseq_peak_1016	chr1	166755187	166755762	+	0	NA	Intergenic	Intergenic	-73629	NM_172844	240894	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding
chipseq_peak_8041	chr2	104218490	104219061	+	0	NA	intron (NM_001033347, intron 11 of 20)	intron (NM_001033347, intron 11 of 20)	96006	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding
chipseq_peak_6799	chr18	45996151	45997160	+	0	NA	intron (NR_040342, intron 2 of 3)	intron (NR_040342, intron 2 of 3)	48605	NR_040342	107003	Mm.395148	NR_040342		A330093E20Rik	AU043608	RIKEN cDNA A330093E20 gene	ncRNA
chipseq_peak_12778	chr8	41457111	41458166	+	0	NA	Intergenic	Intergenic	-40520	NM_013522	14300	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding
chipseq_peak_8082	chr2	110871448	110872363	+	0	NA	intron (NM_001128103, intron 3 of 26)	MTE2b|LTR|ERVL-MaLR	78339	NM_001128103	228432	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding
chipseq_peak_7333	chr19	58512823	58513158	+	0	NA	intron (NM_029372, intron 3 of 8)	intron (NM_029372, intron 3 of 8)	988	NM_029372	75645	Mm.159542	NM_029372	ENSMUSG00000025090	Ccdc172	1700011F14Rik	coiled-coil domain containing 172	protein-coding
chipseq_peak_6915	chr18	64750762	64751695	+	0	NA	Intergenic	Intergenic	-90228	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding
chipseq_peak_7188	chr19	28087586	28088711	+	0	NA	Intergenic	Intergenic	-76982	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding
chipseq_peak_5870	chr16	65872160	65873288	+	0	NA	Intergenic	Intergenic	57091	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like 3 (Drosophila)	protein-coding
chipseq_peak_1642	chr10	66878804	66879505	+	0	NA	Intergenic	Intergenic	-125921	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA
chipseq_peak_680	chr1	104970353	104971005	+	0	NA	intron (NM_011800, intron 7 of 11)	intron (NM_011800, intron 7 of 11)	201860	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_11390	chr6	37175498	37175994	+	0	NA	intron (NM_001081206, intron 1 of 33)	intron (NM_001081206, intron 1 of 33)	124230	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding
chipseq_peak_10367	chr5	23920075	23920937	+	0	NA	intron (NM_001310471, intron 10 of 10)	intron (NM_001310471, intron 10 of 10)	68273	NR_028536	100217436		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA
chipseq_peak_11837	chr6	109739929	109741279	+	0	NA	Intergenic	Intergenic	-904994	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_8410	chr2	172215779	172216099	+	0	NA	Intergenic	Intergenic	-32553	NM_008561	17201	Mm.57183	NM_008561	ENSMUSG00000038537	Mc3r	MC3-R	melanocortin 3 receptor	protein-coding
chipseq_peak_7035	chr18	82493935	82494414	+	0	NA	intron (NM_010777, intron 1 of 6)	(GA)n|Simple_repeat|Simple_repeat	19051	NM_010777	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|mld|shi	myelin basic protein	protein-coding
chipseq_peak_2606	chr11	113014324	113014872	+	0	NA	Intergenic	Intergenic	187240	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA
chipseq_peak_7716	chr2	53717079	53717758	+	0	NA	Intergenic	RLTR22_Mur|LTR|ERVK	368134	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
chipseq_peak_7067	chr19	5785551	5786504	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-14626	NM_023912	78891	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding
chipseq_peak_8305	chr2	144638926	144639505	+	0	NA	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	39262	NM_025314	66044	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding
chipseq_peak_12214	chr7	73615616	73618727	+	0	NA	Intergenic	Intergenic	-58776	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000098496	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA
chipseq_peak_13065	chr8	89324558	89324948	+	0	NA	Intergenic	Intergenic	-280591	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding
chipseq_peak_3037	chr12	59968043	59968539	+	0	NA	Intergenic	Intergenic	-748808	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_6974	chr18	69428767	69429343	+	0	NA	intron (NM_001083967, intron 3 of 19)	intron (NM_001083967, intron 3 of 19)	83334	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
chipseq_peak_2599	chr11	111522782	111523572	+	0	NA	Intergenic	Intergenic	457013	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
chipseq_peak_12228	chr7	75061843	75062309	+	0	NA	intron (NR_131122, intron 6 of 7)	Lx8b|LINE|L1	31865	NR_131122	75205	Mm.399304	NR_131122		4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA
chipseq_peak_7784	chr2	60815736	60816278	+	0	NA	intron (NM_001141931, intron 2 of 13)	intron (NM_001141931, intron 2 of 13)	65431	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
chipseq_peak_10900	chr5	111290078	111290486	+	0	NA	TTS (NM_001267622)	TTS (NM_001267622)	-40415	NM_001301643	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding
chipseq_peak_331	chr1	52264280	52264767	+	0	NA	Intergenic	Intergenic	-31291	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding
chipseq_peak_1304	chr10	16574233	16574956	+	0	NA	Intergenic	Intergenic	521188	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA
chipseq_peak_12438	chr7	111896123	111896635	+	0	NA	Intergenic	Intergenic	-116402	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding
chipseq_peak_901	chr1	145910720	145911436	+	0	NA	Intergenic	Intergenic	-584588	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_7337	chr19	59006583	59007273	+	0	NA	intron (NM_175172, intron 12 of 14)	intron (NM_175172, intron 12 of 14)	63503	NM_178689	226265	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding
chipseq_peak_5028	chr15	42562958	42563398	+	0	NA	intron (NM_009640, intron 1 of 8)	intron (NM_009640, intron 1 of 8)	113799	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
chipseq_peak_5174	chr15	58665094	58665882	+	0	NA	Intergenic	Intergenic	157939	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding
chipseq_peak_6000	chr16	75384110	75385562	+	0	NA	Intergenic	Intergenic	201225	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_11192	chr6	13476180	13477244	+	0	NA	Intergenic	Intergenic	63375	NR_038149	69413	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA
chipseq_peak_13508	chr9	45815129	45815473	+	0	NA	intron (NM_001081373, intron 3 of 29)	intron (NM_001081373, intron 3 of 29)	13337	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding
chipseq_peak_11917	chr6	135543261	135543742	+	0	NA	Intergenic	Intergenic	-115412	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA
chipseq_peak_13074	chr8	90392676	90393108	+	0	NA	Intergenic	Intergenic	-44640	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
chipseq_peak_12353	chr7	92234962	92236436	+	0	NA	intron (NM_001243047, intron 1 of 10)	intron (NM_001243047, intron 1 of 10)	729	NM_001243047	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_6701	chr18	30197447	30198160	+	0	NA	Intergenic	Intergenic	-75093	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_399	chr1	56788437	56790210	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-151872	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_7366	chr2	5031210	5031824	+	0	NA	intron (NM_181848, intron 10 of 14)	intron (NM_181848, intron 10 of 14)	-18726	NM_027290	70024	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance deficient 10 (S. cerevisiae)	protein-coding
chipseq_peak_5406	chr15	94392639	94393295	+	0	NA	intron (NM_177431, intron 3 of 38)	intron (NM_177431, intron 3 of 38)	11383	NM_177431	223838	Mm.214132	NM_177431	ENSMUSG00000022449	Adamts20	Adamst20|bt	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	protein-coding
chipseq_peak_6997	chr18	71607326	71607655	+	0	NA	intron (NM_007831, intron 7 of 28)	intron (NM_007831, intron 7 of 28)	743579	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
chipseq_peak_2657	chr12	7028313	7030895	+	0	NA	Intergenic	Intergenic	350726	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_12893	chr8	55939881	55940303	+	0	NA	promoter-TSS (NM_080438)	promoter-TSS (NM_080438)	-733	NM_080438	110304	Mm.307061	NM_080438		Glra3	-	glycine receptor, alpha 3 subunit	protein-coding
chipseq_peak_10870	chr5	106420601	106421227	+	0	NA	Intergenic	Intergenic	37252	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding
chipseq_peak_5495	chr16	9096090	9096383	+	0	NA	Intergenic	Intergenic	266136	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding
chipseq_peak_14137	chrX	166214480	166215174	+	0	NA	Intergenic	Intergenic	-24116	NM_001177962	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding
chipseq_peak_6844	chr18	54125528	54126897	+	0	NA	Intergenic	Intergenic	264099	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
chipseq_peak_545	chr1	78017833	78018646	+	0	NA	Intergenic	Intergenic	178897	NM_001159520	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding
chipseq_peak_8602	chr3	37052502	37053390	+	0	NA	TTS (NM_172679)	TTS (NM_172679)	-10710	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding
chipseq_peak_9759	chr4	45083443	45083967	+	0	NA	intron (NM_001024142, intron 1 of 10)	intron (NM_001024142, intron 1 of 10)	899	NM_001024142	269529	Mm.389552	NM_001024142	ENSMUSG00000048232	Fbxo10	FBX10|Gm634	F-box protein 10	protein-coding
chipseq_peak_12013	chr6	147947870	147948335	+	0	NA	Intergenic	Intergenic	-99314	NM_178797	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding
chipseq_peak_11043	chr5	132509455	132510144	+	0	NA	intron (NM_177047, intron 1 of 18)	intron (NM_177047, intron 1 of 18)	32544	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
chipseq_peak_1790	chr10	91804944	91805336	+	0	NA	Intergenic	Intergenic	267045	NR_029812	723955		NR_029812	ENSMUSG00000065524	Mir135a-2	Mirn135a-2|mir-135a-2	microRNA 135a-2	ncRNA
chipseq_peak_10643	chr5	71732914	71733740	+	0	NA	intron (NM_008069, intron 3 of 8)	intron (NM_008069, intron 3 of 8)	33311	NM_008069	14400	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding
chipseq_peak_12249	chr7	76941698	76941995	+	0	NA	intron (NM_001199224, intron 22 of 22)	(TAG)n|Simple_repeat|Simple_repeat	711959	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_6804	chr18	47806940	47807898	+	0	NA	Intergenic	Charlie17b|DNA|hAT-Charlie	-115422	NR_045404	414127	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA
chipseq_peak_7311	chr19	56647685	56648051	+	0	NA	Intergenic	Intergenic	-74504	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding
chipseq_peak_3920	chr13	96950382	96950908	+	0	NA	3' UTR (NM_001166065, exon 3 of 3)	3' UTR (NM_001166065, exon 3 of 3)	25956	NM_001166065	218476	Mm.483490	NM_001166065	ENSMUSG00000091387	Gcnt4	C2gnt3|Gm279|Gm73	glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	protein-coding
chipseq_peak_993	chr1	163129446	163130257	+	0	NA	Intergenic	Intergenic	-44181	NM_030071	78258	Mm.78368	NM_030071	ENSMUSG00000071890	Mroh9	4921528O07Rik|Armc11	maestro heat-like repeat family member 9	protein-coding
chipseq_peak_11197	chr6	13746302	13747527	+	0	NA	Intergenic	Intergenic	-68948	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	B630005N14Rik	AI666701	RIKEN cDNA B630005N14 gene	protein-coding
chipseq_peak_4921	chr15	25774021	25775386	+	0	NA	intron (NM_019472, intron 19 of 40)	intron (NM_019472, intron 19 of 40)	-68595	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding
chipseq_peak_2223	chr11	26812677	26813175	+	0	NA	Intergenic	Intergenic	27818	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_2441	chr11	80472164	80472697	+	0	NA	TTS (NM_178616)	TTS (NM_178616)	-4616	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding
chipseq_peak_12367	chr7	92964977	92965526	+	0	NA	Intergenic	Intergenic	89998	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding
chipseq_peak_9001	chr3	85764158	85765339	+	0	NA	Intergenic	Intergenic	-18539	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding
chipseq_peak_8819	chr3	66398301	66398909	+	0	NA	Intergenic	Intergenic	-101768	NM_145820	72789	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding
chipseq_peak_7245	chr19	38249601	38250078	+	0	NA	Intergenic	Intergenic	-14943	NM_020278	56839	Mm.298251	NM_020278		Lgi1	BB130740	leucine-rich repeat LGI family, member 1	protein-coding
chipseq_peak_13814	chr9	101609566	101609956	+	0	NA	Intergenic	MIR|SINE|MIR	267567	NR_110509	102633035	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA
chipseq_peak_4986	chr15	34930526	34930802	+	0	NA	intron (NM_019635, intron 10 of 10)	intron (NM_019635, intron 10 of 10)	92615	NM_001271704	16539	Mm.71045	NM_181317		Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding
chipseq_peak_11389	chr6	37171197	37172057	+	0	NA	intron (NM_001081206, intron 1 of 33)	intron (NM_001081206, intron 1 of 33)	128349	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding
chipseq_peak_11893	chr6	119197962	119198921	+	0	NA	intron (NM_001033379, intron 3 of 8)	intron (NM_001033379, intron 3 of 8)	-2032	NM_001255999	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding
chipseq_peak_7050	chr18	87849796	87850149	+	0	NA	Intergenic	L1MD2|LINE|L1	1044235	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
chipseq_peak_9140	chr3	118139704	118143219	+	0	NA	Intergenic	Intergenic	-272525	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_5656	chr16	41746333	41747487	+	0	NA	intron (NM_175548, intron 1 of 5)	intron (NM_175548, intron 1 of 5)	213568	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_6790	chr18	44956290	44957512	+	0	NA	Intergenic	Intergenic	128236	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding
chipseq_peak_2414	chr11	71944698	71945140	+	0	NA	Intergenic	Intergenic	-4797	NR_045942	73816	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA
chipseq_peak_1616	chr10	61798167	61798620	+	0	NA	Intergenic	Intergenic	-14529	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding
chipseq_peak_4757	chr14	123316720	123318310	+	0	NA	intron (NM_177393, intron 23 of 43)	intron (NM_177393, intron 23 of 43)	148329	NR_045143	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
chipseq_peak_11638	chr6	83103897	83104407	+	0	NA	intron (NM_001081266, intron 5 of 8)	PB1D9|SINE|Alu	2636	NM_001081266	243510	Mm.436553	NM_001081266	ENSMUSG00000079511	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding
chipseq_peak_4252	chr14	36842152	36843483	+	0	NA	Intergenic	Intergenic	92751	NM_028407	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding
chipseq_peak_9591	chr4	21951458	21951742	+	0	NA	intron (NM_175234, intron 3 of 5)	intron (NM_175234, intron 3 of 5)	20274	NM_175234	76132	Mm.159689	NM_175234		Faxc	6230409E13Rik|AW742931	failed axon connections homolog (Drosophila)	protein-coding
chipseq_peak_12946	chr8	64618599	64618906	+	0	NA	intron (NM_013494, intron 2 of 8)	intron (NM_013494, intron 2 of 8)	74288	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding
chipseq_peak_242	chr1	39441691	39442089	+	0	NA	intron (NM_018775, intron 1 of 19)	intron (NM_018775, intron 1 of 19)	36857	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding
chipseq_peak_11752	chr6	102395869	102396436	+	0	NA	intron (NM_008779, intron 3 of 21)	intron (NM_008779, intron 3 of 21)	68515	NM_008779	18488	Mm.435479	NM_008779	ENSMUSG00000030075	Cntn3	Pang	contactin 3	protein-coding
chipseq_peak_3151	chr12	73716245	73716803	+	0	NA	intron (NM_001313977, intron 10 of 14)	intron (NM_001313977, intron 10 of 14)	131728	NM_001313977	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding
chipseq_peak_6060	chr16	80202701	80203410	+	0	NA	Intergenic	Intergenic	-997642	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
chipseq_peak_2907	chr12	43832002	43832454	+	0	NA	Intergenic	Intergenic	377840	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
chipseq_peak_12849	chr8	50276345	50276997	+	0	NA	Intergenic	Intergenic	-91441	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
chipseq_peak_10295	chr5	13666960	13668091	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-124094	NM_027650	71026	Mm.158536	NM_027650	ENSMUSG00000067855	Speer3	4933405P08Rik|SPEER-3	spermatogenesis associated glutamate (E)-rich protein 3	protein-coding
chipseq_peak_12303	chr7	89590570	89591173	+	0	NA	Intergenic	Intergenic	-41947	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
chipseq_peak_7315	chr19	57161606	57162272	+	0	NA	intron (NM_001290813, intron 2 of 20)	intron (NM_001290813, intron 2 of 20)	35692	NM_001103177	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding
chipseq_peak_1110	chr1	177372519	177373867	+	0	NA	Intergenic	Intergenic	-71468	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_5233	chr15	65731411	65731727	+	0	NA	Intergenic	Intergenic	-55472	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
chipseq_peak_9282	chr3	139842693	139844532	+	0	NA	Intergenic	Intergenic	-184637	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA
chipseq_peak_7322	chr19	57505548	57506414	+	0	NA	Intergenic	Intergenic	-2583	NR_040306	78073	Mm.12411	NR_040306		6720468P15Rik	-	RIKEN cDNA 6720468P15 gene	ncRNA
chipseq_peak_6617	chr18	19576605	19577110	+	0	NA	Intergenic	Intergenic	425240	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_7160	chr19	24371393	24372251	+	0	NA	intron (NM_008846, intron 7 of 14)	intron (NM_008846, intron 7 of 14)	-91236	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding
chipseq_peak_1000	chr1	164232082	164232415	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-16798	NM_054087	116914	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding
chipseq_peak_2785	chr12	29547817	29548179	+	0	NA	intron (NM_001093776, intron 1 of 24)	intron (NM_001093776, intron 1 of 24)	13093	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding
chipseq_peak_9150	chr3	118547844	118548380	+	0	NA	Intergenic	Intergenic	-14066	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding
chipseq_peak_4238	chr14	33205806	33206484	+	0	NA	Intergenic	Intergenic	-10678	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding
chipseq_peak_3451	chr13	16758883	16759591	+	0	NA	Intergenic	LTR78B|LTR|ERV1	744762	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_9828	chr4	56376352	56376849	+	0	NA	Intergenic	Intergenic	364825	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding
chipseq_peak_11261	chr6	20421009	20421734	+	0	NA	Intergenic	Intergenic	-794738	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding
chipseq_peak_12250	chr7	77076000	77076554	+	0	NA	intron (NM_001199224, intron 22 of 22)	(CATATA)n|Simple_repeat|Simple_repeat	846390	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_9068	chr3	108241325	108241907	+	0	NA	Intergenic	Intergenic	-15017	NM_008596	17306	Mm.316885	NM_008596		Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding
chipseq_peak_687	chr1	106096114	106096800	+	0	NA	Intergenic	Intergenic	75067	NR_040630	626049	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA
chipseq_peak_12501	chr7	123065939	123066589	+	0	NA	Intergenic	Charlie5|DNA|hAT-Charlie	-57621	NM_144925	233833	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding
chipseq_peak_6471	chr17	82836339	82836583	+	0	NA	Intergenic	Intergenic	241764	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
chipseq_peak_12047	chr7	29070445	29071876	+	0	NA	intron (NM_009109, intron 49 of 105)	intron (NM_009109, intron 49 of 105)	12534	NR_035489	100316710		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA
chipseq_peak_5290	chr15	70012192	70013349	+	0	NA	intron (NR_045071, intron 3 of 5)	intron (NR_045071, intron 3 of 5)	88537	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_4355	chr14	64403832	64404463	+	0	NA	intron (NM_001253712, intron 1 of 5)	intron (NM_001253712, intron 1 of 5)	12809	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_9397	chr3	153473006	153473596	+	0	NA	intron (NM_011372, intron 2 of 4)	intron (NM_011372, intron 2 of 4)	-174652	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA
chipseq_peak_2938	chr12	49473184	49473707	+	0	NA	Intergenic	Intergenic	7417	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA
chipseq_peak_11169	chr6	12084648	12085264	+	0	NA	Intergenic	Intergenic	24624	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo
chipseq_peak_238	chr1	39105824	39106767	+	0	NA	Intergenic	Intergenic	80697	NR_105767	102466631		NR_105767	ENSMUSG00000098833	Mir6349	Gm27558|mmu-mir-6349	microRNA 6349	ncRNA
chipseq_peak_8216	chr2	136668373	136669751	+	0	NA	Intergenic	Intergenic	-44388	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding
chipseq_peak_8960	chr3	82046017	82046639	+	0	NA	intron (NM_017469, intron 5 of 13)	Tigger19a|DNA|TcMar-Tigger	28383	NM_017469	54195	Mm.9445	NM_017469	ENSMUSG00000028005	Gucy1b3	GC-S-beta-1|GCbeta1	guanylate cyclase 1, soluble, beta 3	protein-coding
chipseq_peak_13711	chr9	79954724	79955316	+	0	NA	intron (NM_001081243, intron 1 of 5)	intron (NM_001081243, intron 1 of 5)	22862	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding
chipseq_peak_10297	chr5	14100530	14101619	+	0	NA	intron (NM_011348, intron 1 of 16)	intron (NM_011348, intron 1 of 16)	75798	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding
chipseq_peak_9905	chr4	75262074	75265465	+	0	NA	Intergenic	Intergenic	14517	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_12341	chr7	91674403	91675748	+	0	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-387319	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_6269	chr17	48340198	48340828	+	0	NA	Intergenic	PB1D9|SINE|Alu	-5888	NM_031254	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding
chipseq_peak_10634	chr5	71009991	71011840	+	0	NA	intron (NM_008066, intron 6 of 9)	intron (NM_008066, intron 6 of 9)	84934	NM_008066	14395	Mm.5304	NM_008066		Gabra2	C630048P16Rik|Gabra-2	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2	protein-coding
chipseq_peak_12735	chr8	35897597	35897885	+	0	NA	Intergenic	Intergenic	-14784	NR_046181	330737	Mm.381743	NR_046181		5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA
chipseq_peak_6732	chr18	33236216	33236585	+	0	NA	Intergenic	Intergenic	-22584	NM_133774	170459	Mm.127058	NM_133774		Stard4	4632419C16Rik|9030213J02Rik|AA517649|AW324468	StAR-related lipid transfer (START) domain containing 4	protein-coding
chipseq_peak_3471	chr13	20901054	20902298	+	0	NA	intron (NM_012054, intron 5 of 20)	intron (NM_012054, intron 5 of 20)	107563	NM_001281854	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding
chipseq_peak_8114	chr2	114620711	114622832	+	0	NA	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	33157	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
chipseq_peak_5277	chr15	68396453	68396944	+	0	NA	Intergenic	RLTR13D6|LTR|ERVK	-55409	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA
chipseq_peak_5675	chr16	42418227	42418716	+	0	NA	Intergenic	Intergenic	-77820	NM_008083	14432	Mm.1222	NM_008083	ENSMUSG00000047261	Gap43	B-50|Basp2|GAP-43	growth associated protein 43	protein-coding
chipseq_peak_13873	chr9	109969688	109970132	+	0	NA	intron (NM_008633, intron 1 of 18)	intron (NM_008633, intron 1 of 18)	38136	NM_001205330	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding
chipseq_peak_5141	chr15	53994880	53995796	+	0	NA	Intergenic	Intergenic	-92902	NM_177225	320679	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding
chipseq_peak_9567	chr4	17984796	17986019	+	0	NA	intron (NM_019724, intron 1 of 9)	intron (NM_019724, intron 1 of 9)	131925	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_7802	chr2	62331678	62335091	+	0	NA	3' UTR (NM_001159543, exon 25 of 25)	3' UTR (NM_001159543, exon 25 of 25)	78847	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding
chipseq_peak_11974	chr6	143287424	143290332	+	0	NA	intron (NR_027803, intron 3 of 3)	intron (NR_027803, intron 3 of 3)	42990	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA
chipseq_peak_12963	chr8	66166998	66168068	+	0	NA	intron (NM_001293784, intron 4 of 8)	intron (NM_001293784, intron 4 of 8)	-218768	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
chipseq_peak_11992	chr6	144419033	144419815	+	0	NA	Intergenic	Intergenic	-209856	NM_001243163	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
chipseq_peak_4585	chr14	99894756	99895038	+	0	NA	intron (NM_010636, intron 6 of 6)	intron (NM_010636, intron 6 of 6)	254899	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
chipseq_peak_1372	chr10	27043227	27043779	+	0	NA	intron (NM_008481, intron 46 of 63)	intron (NM_008481, intron 46 of 63)	270991	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
chipseq_peak_5351	chr15	83875808	83876694	+	0	NA	intron (NM_029946, intron 27 of 31)	intron (NM_029946, intron 27 of 31)	43122	NM_001161629	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding
chipseq_peak_10810	chr5	97276611	97277975	+	0	NA	Intergenic	Intergenic	115037	NM_001033191	97243	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding
chipseq_peak_11203	chr6	13871314	13872756	+	0	NA	promoter-TSS (NR_024619)	promoter-TSS (NR_024619)	466	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
chipseq_peak_9076	chr3	109919025	109919458	+	0	NA	intron (NM_133488, intron 3 of 6)	intron (NM_133488, intron 3 of 6)	224231	NM_133488	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding
chipseq_peak_513	chr1	72243672	72244831	+	0	NA	Intergenic	U2|snRNA|snRNA	-31944	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding
chipseq_peak_3861	chr13	90163457	90165323	+	0	NA	Intergenic	Intergenic	74723	NM_025335	66074	Mm.241387	NM_025335		Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding
chipseq_peak_9928	chr4	77558750	77559325	+	0	NA	intron (NM_011211, intron 3 of 39)	intron (NM_011211, intron 3 of 39)	652858	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_4325	chr14	60413984	60415136	+	0	NA	Intergenic	Intergenic	36274	NM_028113	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding
chipseq_peak_9382	chr3	151342231	151342501	+	0	NA	Intergenic	Intergenic	-95516	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_12907	chr8	57879651	57879946	+	0	NA	intron (NM_175032, intron 7 of 11)	intron (NM_175032, intron 7 of 11)	-226743	NM_001167981	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
chipseq_peak_462	chr1	66386665	66387147	+	0	NA	intron (NM_001310634, intron 4 of 14)	intron (NM_001310634, intron 4 of 14)	65182	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding
chipseq_peak_4425	chr14	76617194	76617850	+	0	NA	Intergenic	Intergenic	-60046	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA
chipseq_peak_10569	chr5	62663010	62664328	+	0	NA	intron (NM_178407, intron 19 of 32)	intron (NM_178407, intron 19 of 32)	102508	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
chipseq_peak_9760	chr4	45259392	45260501	+	0	NA	intron (NM_001081172, intron 6 of 15)	intron (NM_001081172, intron 6 of 15)	-15956	NR_040666	78508	Mm.416908	NR_040666	ENSMUSG00000086284	Frmpd1os	2900093L17Rik	FERM and PDZ domain containing 1, opposite strand	ncRNA
chipseq_peak_3456	chr13	17432367	17432710	+	0	NA	intron (NM_138654, intron 9 of 13)	intron (NM_138654, intron 9 of 13)	262227	NM_138654	192136	Mm.364180	NM_138654		Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding
chipseq_peak_5985	chr16	74683130	74684529	+	0	NA	Intergenic	Intergenic	-272917	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_9892	chr4	72766928	72767256	+	0	NA	Intergenic	Intergenic	85542	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding
chipseq_peak_9088	chr3	113080574	113081187	+	0	NA	Intergenic	Intergenic	75847	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding
chipseq_peak_10032	chr4	90437730	90438913	+	0	NA	Intergenic	Intergenic	-77007	NR_033610	619842	Mm.484218	NR_033610	ENSMUSG00000080756	Gm12633	OTTMUSG00000007790	zinc finger protein 352 pseudogene	pseudo
chipseq_peak_13266	chr8	127915653	127915929	+	0	NA	Intergenic	L1MA4|LINE|L1	362434	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA
chipseq_peak_2122	chr11	6183387	6184417	+	0	NA	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	-10571	NR_029471	100042173	Mm.441799	NR_029471		Rps15a-ps6	Gm11968|OTTMUSG00000005107	ribosomal protein S15A, pseudogene 6	pseudo
chipseq_peak_9599	chr4	23176414	23176843	+	0	NA	Intergenic	Intergenic	686080	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
chipseq_peak_4097	chr13	115050659	115051052	+	0	NA	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	39303	NM_134058	105083	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota homolog (Drosophila)	protein-coding
chipseq_peak_7866	chr2	67730498	67731122	+	0	NA	Intergenic	Intergenic	-50233	NR_105752	102466627		NR_105752	ENSMUSG00000098734	Mir6335	Gm27836|mmu-mir-6335	microRNA 6335	ncRNA
chipseq_peak_7466	chr2	13290429	13290881	+	0	NA	intron (NM_001081084, intron 60 of 66)	intron (NM_001081084, intron 60 of 66)	-19240	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding
chipseq_peak_7587	chr2	43005800	43006185	+	0	NA	Intergenic	Intergenic	-352394	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding
chipseq_peak_4677	chr14	114137867	114138881	+	0	NA	Intergenic	L1MA7|LINE|L1	-693591	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_10015	chr4	87590032	87591767	+	0	NA	Intergenic	Intergenic	215424	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	protein-coding
chipseq_peak_3190	chr12	77403487	77404574	+	0	NA	intron (NR_045554, intron 7 of 11)	intron (NR_045554, intron 7 of 11)	-6111	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding
chipseq_peak_9450	chr4	5723907	5725624	+	0	NA	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	80586	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding
chipseq_peak_38	chr1	11649996	11650596	+	0	NA	intron (NM_001310451, intron 7 of 12)	intron (NM_001310451, intron 7 of 12)	236191	NM_001160369	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding
chipseq_peak_3859	chr13	89914224	89914648	+	0	NA	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-171924	NM_172955	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding
chipseq_peak_10822	chr5	97653899	97655866	+	0	NA	Intergenic	Intergenic	-197874	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding
chipseq_peak_6182	chr17	10357087	10357694	+	0	NA	Intergenic	Intergenic	32788	NR_045461	76634	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA
chipseq_peak_1789	chr10	91734428	91734717	+	0	NA	Intergenic	Intergenic	337613	NR_029812	723955		NR_029812	ENSMUSG00000065524	Mir135a-2	Mirn135a-2|mir-135a-2	microRNA 135a-2	ncRNA
chipseq_peak_8479	chr3	17632503	17632969	+	0	NA	Intergenic	Intergenic	-157185	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	2610100L16Rik	100040120|Gm2612	RIKEN cDNA 2610100L16 gene	ncRNA
chipseq_peak_12517	chr7	127477598	127478668	+	0	NA	Intergenic	Intergenic	6519	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding
chipseq_peak_8757	chr3	55965373	55966339	+	0	NA	intron (NM_030595, intron 31 of 57)	intron (NM_030595, intron 31 of 57)	118751	NR_033592	71182	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo
chipseq_peak_9197	chr3	123708509	123709046	+	0	NA	Intergenic	L1M5|LINE|L1	-17925	NR_121616	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding
chipseq_peak_10494	chr5	50626473	50627038	+	0	NA	Intergenic	Intergenic	373993	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
chipseq_peak_11644	chr6	86736458	86737876	+	0	NA	3' UTR (NM_013471, exon 13 of 13)	3' UTR (NM_013471, exon 13 of 13)	-3789	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Gcl|mglc-1	germ cell-less homolog 1 (Drosophila)	protein-coding
chipseq_peak_3692	chr13	70091675	70092388	+	0	NA	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-63683	NR_045965	74280	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA
chipseq_peak_10374	chr5	26175650	26176392	+	0	NA	Intergenic	Intergenic	-54596	NM_001134299	434689	Mm.484129	NM_001134299	ENSMUSG00000067698	Gm10220	ENSMUSG00000067698	predicted gene 10220	protein-coding
chipseq_peak_4020	chr13	108138452	108138904	+	0	NA	intron (NM_001127346, intron 1 of 3)	intron (NM_001127346, intron 1 of 3)	19947	NM_001127346	75597	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding
chipseq_peak_9822	chr4	55166300	55166741	+	0	NA	Intergenic	L1MD1|LINE|L1	-183522	NM_009011	19359	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23b homolog (S. cerevisiae)	protein-coding
chipseq_peak_41	chr1	12345382	12345758	+	0	NA	Intergenic	Intergenic	-80416	NR_105759	102465961		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA
chipseq_peak_10005	chr4	86408473	86408707	+	0	NA	intron (NM_029967, intron 22 of 27)	MER131|SINE?|SINE?	149713	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stablizer of axonemal microtubules 1	protein-coding
chipseq_peak_1005	chr1	164683834	164684815	+	0	NA	Intergenic	Intergenic	-112408	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding
chipseq_peak_11322	chr6	30920770	30921687	+	0	NA	Intergenic	L2|LINE|L2	-5655	NM_054073	116732	Mm.207048	NM_054073	ENSMUSG00000039032	Tsga13	1700023D02Rik|Vme1	testis specific gene A13	protein-coding
chipseq_peak_13280	chr9	5448238	5448623	+	0	NA	Intergenic	Intergenic	102954	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding
chipseq_peak_4418	chr14	76053771	76054100	+	0	NA	Intergenic	Intergenic	-43070	NM_026816	68705	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding
chipseq_peak_7001	chr18	72087371	72088051	+	0	NA	intron (NM_007831, intron 1 of 28)	intron (NM_007831, intron 1 of 28)	263358	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
chipseq_peak_10597	chr5	66209586	66210059	+	0	NA	Intergenic	Intergenic	-18487	NR_040695	73639	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA
chipseq_peak_33	chr1	10871253	10872205	+	0	NA	Intergenic	Intergenic	-5855	NR_030645	100124448		NR_030645	ENSMUSG00000076948	Mir467e	Mirn467e	microRNA 467e	ncRNA
chipseq_peak_3492	chr13	26327021	26327297	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-14753	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA
chipseq_peak_9891	chr4	72592026	72592683	+	0	NA	Intergenic	Intergenic	260280	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding
chipseq_peak_13339	chr9	21131094	21131734	+	0	NA	promoter-TSS (NM_018793)	promoter-TSS (NM_018793)	-139	NM_018793	54721	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding
chipseq_peak_4834	chr15	16728494	16728990	+	0	NA	Intergenic	Intergenic	-49359	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_2754	chr12	26231891	26232327	+	0	NA	intron (NR_046278, intron 2 of 2)	intron (NR_046278, intron 2 of 2)	20842	NR_046278	74930	Mm.398932	NR_046278		4930480M12Rik	-	RIKEN cDNA 4930480M12 gene	ncRNA
chipseq_peak_1865	chr10	99603574	99604101	+	0	NA	Intergenic	Intergenic	-5334	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA
chipseq_peak_9013	chr3	89652804	89653646	+	0	NA	intron (NM_080466, intron 5 of 7)	intron (NM_080466, intron 5 of 7)	-61797	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding
chipseq_peak_12484	chr7	120177682	120178242	+	0	NA	intron (NM_028085, intron 1 of 1)	intron (NM_028085, intron 1 of 1)	4104	NM_028085	72074	Mm.23165	NM_028085	ENSMUSG00000030909	Anks4b	2010013E14Rik|AI956809|Harp	ankyrin repeat and sterile alpha motif domain containing 4B	protein-coding
chipseq_peak_13650	chr9	63856093	63856626	+	0	NA	Intergenic	Intergenic	-98365	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding
chipseq_peak_3092	chr12	67099181	67100004	+	0	NA	intron (NM_207010, intron 1 of 15)	MLT1E2|LTR|ERVL-MaLR	122957	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_8038	chr2	103564770	103565085	+	0	NA	Intergenic	Intergenic	-1383	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
chipseq_peak_11501	chr6	52838198	52839022	+	0	NA	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	71010	NM_001168277	231986	Mm.386865	NM_173406		Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding
chipseq_peak_9906	chr4	75561759	75562696	+	0	NA	Intergenic	Intergenic	-283941	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_5129	chr15	52689488	52691161	+	0	NA	Intergenic	Intergenic	-22121	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
chipseq_peak_1321	chr10	19031939	19032159	+	0	NA	Intergenic	Intergenic	-16639	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding
chipseq_peak_11091	chr5	143638159	143638617	+	0	NA	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	-12853	NM_001163548	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding
chipseq_peak_9542	chr4	15022795	15023609	+	0	NA	intron (NM_178617, intron 5 of 12)	intron (NM_178617, intron 5 of 12)	92561	NM_001243100	100038514	Mm.331495	NM_001243100		Gm11837	OTTMUSG00000004551	predicted gene 11837	protein-coding
chipseq_peak_6537	chr17	91245969	91246577	+	0	NA	Intergenic	Intergenic	-153471	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
chipseq_peak_1875	chr10	100617264	100617847	+	0	NA	intron (NM_001081246, intron 12 of 12)	GA-rich|Low_complexity|Low_complexity	25169	NM_001081246	66605	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding
chipseq_peak_758	chr1	124825629	124826285	+	0	NA	Intergenic	Intergenic	609770	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding
chipseq_peak_3860	chr13	90134297	90134872	+	0	NA	Intergenic	Intergenic	44917	NM_025335	66074	Mm.241387	NM_025335		Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding
chipseq_peak_2291	chr11	40473615	40474009	+	0	NA	Intergenic	Intergenic	218870	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding
chipseq_peak_578	chr1	83354097	83354828	+	0	NA	intron (NM_172430, intron 2 of 10)	intron (NM_172430, intron 2 of 10)	53738	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding
chipseq_peak_9897	chr4	74067171	74067463	+	0	NA	intron (NM_172869, intron 1 of 13)	intron (NM_172869, intron 1 of 13)	53714	NM_172869	242506	Mm.221597	NM_172869	ENSMUSG00000049122	Frmd3	4.1O|9430066I12Rik|EPB41L4O|P410	FERM domain containing 3	protein-coding
chipseq_peak_6373	chr17	66266771	66267364	+	0	NA	Intergenic	Intergenic	143547	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding
chipseq_peak_11841	chr6	110608065	110608752	+	0	NA	Intergenic	Intergenic	-37190	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_4411	chr14	74822969	74823216	+	0	NA	intron (NM_001252132, intron 4 of 18)	intron (NM_001252132, intron 4 of 18)	90795	NM_001285423	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding
chipseq_peak_10784	chr5	89631516	89632315	+	0	NA	Intergenic	Intergenic	15479	NR_037571	631105	Mm.7732	NR_037571		Gm7056	Gm149	predicted gene 7056	ncRNA
chipseq_peak_11962	chr6	140143424	140143776	+	0	NA	Intergenic	Intergenic	102075	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding
chipseq_peak_4138	chr14	10630869	10631497	+	0	NA	intron (NM_001308285, intron 4 of 9)	intron (NM_001308285, intron 4 of 9)	-107370	NR_131139	547334	Mm.434606	NR_131139	ENSMUSG00000089833	Fhitos	Gm16542	fragile histidine triad gene, opposite strand	ncRNA
chipseq_peak_5122	chr15	52054275	52054861	+	0	NA	Intergenic	Intergenic	14461	NM_175503	239435	Mm.24204	NM_175503	ENSMUSG00000068522	Aard	A5D3|AV328152	alanine and arginine rich domain containing protein	protein-coding
chipseq_peak_8190	chr2	134059348	134060429	+	0	NA	Intergenic	Intergenic	494464	NM_010403	15112	Mm.26634	NM_010403	ENSMUSG00000027261	Hao1	GOX|Gox1|Hao-1	hydroxyacid oxidase 1, liver	protein-coding
chipseq_peak_13374	chr9	27233706	27234425	+	0	NA	Intergenic	Intergenic	-65163	NM_001033323	235086	Mm.335029	NM_001033323	ENSMUSG00000034275	Igsf9b	Gm508|mKIAA1030	immunoglobulin superfamily, member 9B	protein-coding
chipseq_peak_8821	chr3	66564300	66565235	+	0	NA	Intergenic	Intergenic	-267930	NM_145820	72789	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding
chipseq_peak_7070	chr19	7068149	7068645	+	0	NA	intron (NM_134147, intron 3 of 10)	intron (NM_134147, intron 3 of 10)	11629	NM_134147	107227	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding
chipseq_peak_5375	chr15	90309760	90310174	+	0	NA	Intergenic	LTR40b|LTR|ERVL	85607	NR_106106	102466838		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA
chipseq_peak_1377	chr10	27123821	27124638	+	0	NA	intron (NM_008481, intron 35 of 63)	intron (NM_008481, intron 35 of 63)	-265637	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_8955	chr3	81923208	81923562	+	0	NA	Intergenic	Intergenic	-9231	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
chipseq_peak_11879	chr6	117099856	117100444	+	0	NA	Intergenic	Intergenic	-68385	NM_013655	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding
chipseq_peak_6771	chr18	42296651	42297206	+	0	NA	intron (NM_172626, intron 3 of 19)	intron (NM_172626, intron 3 of 19)	21575	NM_172626	225432	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding
chipseq_peak_13879	chr9	111465659	111465977	+	0	NA	intron (NM_172928, intron 1 of 4)	intron (NM_172928, intron 1 of 4)	26737	NM_172928	245038	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding
chipseq_peak_5538	chr16	24542799	24543342	+	0	NA	intron (NM_001145952, intron 2 of 11)	intron (NM_001145952, intron 2 of 11)	13756	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo
chipseq_peak_5340	chr15	80798174	80799162	+	0	NA	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	58	NM_177124	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding
chipseq_peak_11259	chr6	19551809	19552450	+	0	NA	Intergenic	Intergenic	-3213	NR_105789	102465192		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA
chipseq_peak_3168	chr12	74389827	74390136	+	0	NA	Intergenic	Intergenic	92507	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding
chipseq_peak_107	chr1	23321914	23322588	+	0	NA	Intergenic	Lx9|LINE|L1	30550	NR_029717	723964		NR_029717	ENSMUSG00000065567	Mir30c-2	Mirn30c-2|mir-30c-2	microRNA 30c-2	ncRNA
chipseq_peak_12449	chr7	113607775	113608279	+	0	NA	Intergenic	Intergenic	-43040	NR_126544	69295	Mm.396150	NR_126544		Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA
chipseq_peak_12573	chr7	144204346	144205519	+	0	NA	intron (NM_001113373, intron 4 of 15)	intron (NM_001113373, intron 4 of 15)	29412	NM_001113373	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding
chipseq_peak_4258	chr14	37554010	37554293	+	0	NA	Intergenic	Lx5b|LINE|L1	-418829	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
chipseq_peak_13486	chr9	41740324	41741649	+	0	NA	Intergenic	Intergenic	159060	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA
chipseq_peak_429	chr1	60838960	60839330	+	0	NA	Intergenic	Intergenic	-69880	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding
chipseq_peak_12274	chr7	83056097	83056974	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-85144	NR_045855	71285	Mm.76818	NR_045855		4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA
chipseq_peak_10675	chr5	74451006	74451466	+	0	NA	intron (NM_001286437, intron 4 of 7)	intron (NM_001286437, intron 4 of 7)	80506	NM_178672	212986	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding
chipseq_peak_3254	chr12	89503550	89503869	+	0	NA	intron (NM_172544, intron 9 of 19)	L2b|LINE|L2	-308774	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
chipseq_peak_5442	chr15	98166906	98167375	+	0	NA	promoter-TSS (NM_177716)	promoter-TSS (NM_177716)	-666	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding
chipseq_peak_13534	chr9	49818498	49818821	+	0	NA	Intergenic	Intergenic	-19266	NM_001311065	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding
chipseq_peak_13460	chr9	37939562	37939919	+	0	NA	Intergenic	Intergenic	21192	NM_146798	258794	Mm.377695	NM_146798	ENSMUSG00000066747	Olfr878	MOR163-1	olfactory receptor 878	protein-coding
chipseq_peak_4964	chr15	32002906	32004292	+	0	NA	Intergenic	Intergenic	-173690	NM_020503	57254	Mm.377133	NM_020503	ENSMUSG00000045267	Tas2r119	T2r19|Tas2r19|mGR19|mt2r19	taste receptor, type 2, member 119	protein-coding
chipseq_peak_3570	chr13	43706517	43707371	+	0	NA	Intergenic	Intergenic	-9847	NR_046022	622552	Mm.375036	NR_046022		Gm20751	-	predicted gene, 20751	ncRNA
chipseq_peak_8511	chr3	21025474	21026353	+	0	NA	Intergenic	Intergenic	-658736	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
chipseq_peak_1733	chr10	82661243	82663104	+	0	NA	exon (NM_029102, exon 5 of 10)	exon (NM_029102, exon 5 of 10)	28477	NM_029102	74782	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding
chipseq_peak_19	chr1	7750854	7751231	+	0	NA	Intergenic	Intergenic	662122	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
chipseq_peak_7522	chr2	29413106	29413407	+	0	NA	intron (NM_001290489, intron 1 of 6)	intron (NM_001290489, intron 1 of 6)	34742	NM_001290489	68975	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding
chipseq_peak_571	chr1	82905889	82906300	+	0	NA	Intergenic	Intergenic	66634	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding
chipseq_peak_596	chr1	88995941	88996822	+	0	NA	Intergenic	Intergenic	-19732	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA
chipseq_peak_9376	chr3	150954856	150955230	+	0	NA	Intergenic	Intergenic	-482839	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_11584	chr6	73791986	73792542	+	0	NA	Intergenic	Intergenic	-321243	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA
chipseq_peak_7575	chr2	41434977	41435467	+	0	NA	intron (NM_053011, intron 18 of 90)	intron (NM_053011, intron 18 of 90)	1012346	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
chipseq_peak_12538	chr7	132183779	132184313	+	0	NA	Intergenic	Intergenic	-29305	NM_018867	55987	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding
chipseq_peak_2294	chr11	40555380	40555762	+	0	NA	Intergenic	Intergenic	137111	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding
chipseq_peak_2690	chr12	12252695	12255141	+	0	NA	Intergenic	Intergenic	-8221	NM_029758	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding
chipseq_peak_5729	chr16	49288089	49288668	+	0	NA	Intergenic	Intergenic	230892	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding
chipseq_peak_1855	chr10	99317466	99319058	+	0	NA	Intergenic	Intergenic	55031	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
chipseq_peak_9691	chr4	31608942	31609293	+	0	NA	Intergenic	Intergenic	-354990	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_10260	chr5	7102420	7102690	+	0	NA	intron (NM_001163223, intron 1 of 3)	intron (NM_001163223, intron 1 of 3)	-201609	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding
chipseq_peak_9127	chr3	117788287	117789213	+	0	NA	intron (NM_001190156, intron 7 of 7)	(CAAAC)n|Simple_repeat|Simple_repeat	80186	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_12497	chr7	121676917	121677286	+	0	NA	intron (NM_001033173, intron 5 of 15)	intron (NM_001033173, intron 5 of 15)	30152	NM_001033173	76179	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding
chipseq_peak_2776	chr12	27984172	27984826	+	0	NA	Intergenic	Intergenic	563838	NM_001177964	68511	Mm.310284	NM_001177964	ENSMUSG00000020633	Dcdc2c	1110015M06Rik	doublecortin domain containing 2C	protein-coding
chipseq_peak_7850	chr2	66173198	66173505	+	0	NA	Intergenic	Intergenic	-48558	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
chipseq_peak_8221	chr2	137124983	137125350	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	-8646	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding
chipseq_peak_6584	chr18	12882266	12884009	+	0	NA	intron (NM_207530, intron 13 of 27)	RLTR46A|LTR|ERVK	-3158	NM_001252489	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding
chipseq_peak_1838	chr10	97623773	97625170	+	0	NA	Intergenic	(GGGAGA)n|Simple_repeat|Simple_repeat	17266	NM_008438	16545	Mm.6228	NM_008438	ENSMUSG00000019932	Kera	CNA2|SLRR2B	keratocan	protein-coding
chipseq_peak_12098	chr7	50441216	50441881	+	0	NA	intron (NM_001037906, intron 12 of 19)	L1MC1|LINE|L1	134336	NR_045928	73515	Mm.437440	NR_045928	ENSMUSG00000085265	Nell1os	1700081H22Rik	NEL-like 1, opposite strand	ncRNA
chipseq_peak_13818	chr9	102038273	102040175	+	0	NA	intron (NM_173447, intron 5 of 15)	intron (NM_173447, intron 5 of 15)	265751	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA
chipseq_peak_11146	chr6	7601460	7601956	+	0	NA	Intergenic	Intergenic	46637	NM_009311	21333	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding
chipseq_peak_10318	chr5	16235723	16239066	+	0	NA	intron (NM_009784, intron 6 of 37)	intron (NM_009784, intron 6 of 37)	302703	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_7612	chr2	43947325	43951413	+	0	NA	intron (NM_001301832, intron 7 of 14)	intron (NM_001301832, intron 7 of 14)	115955	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_7777	chr2	59139989	59141194	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-20259	NM_175464	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding
chipseq_peak_13444	chr9	34599580	34600251	+	0	NA	intron (NM_001190912, intron 1 of 15)	intron (NM_001190912, intron 1 of 15)	111184	NM_001190912	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding
chipseq_peak_6511	chr17	89470372	89470779	+	0	NA	Intergenic	Lx7|LINE|L1	91334	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
chipseq_peak_3181	chr12	75424107	75424688	+	0	NA	Intergenic	Intergenic	-7616	NM_175644	217674	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding
chipseq_peak_4989	chr15	35502114	35502488	+	0	NA	intron (NM_177151, intron 17 of 61)	intron (NM_177151, intron 17 of 61)	130755	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B (yeast)	protein-coding
chipseq_peak_11272	chr6	22473890	22474378	+	0	NA	Intergenic	Intergenic	-118053	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding
chipseq_peak_2508	chr11	91593031	91593739	+	0	NA	Intergenic	Intergenic	-15830	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding
chipseq_peak_6791	chr18	45008827	45009304	+	0	NA	Intergenic	Intergenic	180400	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding
chipseq_peak_5195	chr15	61670789	61671178	+	0	NA	Intergenic	Intergenic	103468	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA
chipseq_peak_11328	chr6	32276392	32276930	+	0	NA	intron (NM_175750, intron 4 of 31)	MER2|DNA|TcMar-Tigger	226373	NM_029587	76382	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding
chipseq_peak_4312	chr14	56497193	56498451	+	0	NA	intron (NM_001033043, intron 26 of 36)	intron (NM_001033043, intron 26 of 36)	74024	NM_001014996	219103	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding
chipseq_peak_11635	chr6	81768895	81769446	+	0	NA	Intergenic	Intergenic	126493	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA
chipseq_peak_1980	chr10	110413091	110413860	+	0	NA	Intergenic	Intergenic	-187175	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
chipseq_peak_5875	chr16	66901611	66902789	+	0	NA	intron (NM_001145977, intron 1 of 8)	intron (NM_001145977, intron 1 of 8)	245082	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA
chipseq_peak_3704	chr13	74390825	74391276	+	0	NA	Intergenic	Intergenic	-14484	NM_001081680	238722	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding
chipseq_peak_12796	chr8	44412128	44413308	+	0	NA	Intergenic	Intergenic	-537490	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chipseq_peak_3944	chr13	99146204	99146956	+	0	NA	Intergenic	Intergenic	-38243	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding
chipseq_peak_2989	chr12	52386116	52387118	+	0	NA	Intergenic	Intergenic	-129460	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding
chipseq_peak_11031	chr5	132011822	132012182	+	0	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	131733	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_12742	chr8	36924185	36925177	+	0	NA	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	27761	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding
chipseq_peak_468	chr1	67183440	67184043	+	0	NA	intron (NM_001080809, intron 21 of 37)	intron (NM_001080809, intron 21 of 37)	60714	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding
chipseq_peak_10461	chr5	45208833	45209598	+	0	NA	intron (NR_131933, intron 4 of 5)	intron (NR_131933, intron 4 of 5)	215185	NR_131933	52401	Mm.33854	NR_131933		D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA
chipseq_peak_12049	chr7	29905958	29907136	+	0	NA	promoter-TSS (NM_011754)	promoter-TSS (NM_011754)	-15	NM_001285798	22689	Mm.86747	NM_011754	ENSMUSG00000062040	Zfp27	Zfp-27|mkr-4|mszf76	zinc finger protein 27	protein-coding
chipseq_peak_3449	chr13	16654953	16656467	+	0	NA	Intergenic	Intergenic	641235	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_4968	chr15	32323558	32324406	+	0	NA	intron (NM_009154, intron 1 of 22)	MER20|DNA|hAT-Charlie	79169	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding
chipseq_peak_1209	chr1	193893381	193895026	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	328556	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_1641	chr10	66234482	66234870	+	0	NA	Intergenic	L1MC1|LINE|L1	89380	NR_131070	77198	Mm.107617	NR_131070		4930407I19Rik	-	RIKEN cDNA 4930407I19 gene	ncRNA
chipseq_peak_12378	chr7	94853709	94854549	+	0	NA	Intergenic	Intergenic	-1317115	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
chipseq_peak_11333	chr6	32837532	32838544	+	0	NA	intron (NM_025336, intron 6 of 7)	intron (NM_025336, intron 6 of 7)	222114	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
chipseq_peak_11214	chr6	14331899	14332182	+	0	NA	Intergenic	MTE-int|LTR|ERVL-MaLR	423234	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding
chipseq_peak_13016	chr8	77682631	77683071	+	0	NA	intron (NM_010332, intron 3 of 7)	intron (NM_010332, intron 3 of 7)	41601	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding
chipseq_peak_6313	chr17	54559961	54560377	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-190095	NR_045825	69418	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA
chipseq_peak_488	chr1	70746656	70747009	+	0	NA	intron (NM_001310658, intron 2 of 2)	intron (NM_001310658, intron 2 of 2)	21117	NM_001310658	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_13383	chr9	27634655	27635364	+	0	NA	Intergenic	Intergenic	-156260	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_11581	chr6	73054887	73055837	+	0	NA	intron (NM_001164669, intron 61 of 76)	Tigger1|DNA|TcMar-Tigger	-96614	NM_001190327	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding
chipseq_peak_6793	chr18	45123111	45123753	+	0	NA	Intergenic	Intergenic	-145428	NM_001312905	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding
chipseq_peak_13962	chr9	123384341	123385622	+	0	NA	intron (NM_153168, intron 3 of 20)	intron (NM_153168, intron 3 of 20)	18041	NM_153168	102436	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding
chipseq_peak_12512	chr7	127208720	127209401	+	0	NA	promoter-TSS (NM_144522)	promoter-TSS (NM_144522)	-592	NM_144522	68449	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding
chipseq_peak_13637	chr9	62095181	62095546	+	0	NA	Intergenic	Intergenic	-24757	NM_033320	93683	Mm.24411	NM_033320	ENSMUSG00000032252	Glce	1110017N23Rik|AI747411|C130034A12Rik|Hsepi	glucuronyl C5-epimerase	protein-coding
chipseq_peak_13892	chr9	112432110	112432815	+	0	NA	Intergenic	Intergenic	175888	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_3223	chr12	82339185	82339976	+	0	NA	intron (NM_172579, intron 1 of 20)	intron (NM_172579, intron 1 of 20)	28231	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding
chipseq_peak_10439	chr5	43372443	43372852	+	0	NA	Intergenic	Intergenic	-137293	NR_028417	665934	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934|ENSMUSG00000054483	predicted gene 7854	ncRNA
chipseq_peak_4648	chr14	108914084	108914605	+	0	NA	promoter-TSS (NM_199065)	promoter-TSS (NM_199065)	-105	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_4358	chr14	64430957	64431369	+	0	NA	intron (NM_001253712, intron 1 of 5)	L1MD|LINE|L1	9863	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_3652	chr13	57870025	57870529	+	0	NA	intron (NM_001166464, intron 2 of 10)	intron (NM_001166464, intron 2 of 10)	38055	NM_001166464	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding
chipseq_peak_6186	chr17	10649562	10649977	+	0	NA	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	190422	NM_027032	69310	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding
chipseq_peak_5179	chr15	59835488	59835735	+	0	NA	Intergenic	Lx9|LINE|L1	-40652	NR_045076	100503021	Mm.402924	NR_045076		Gm19510	-	predicted gene, 19510	ncRNA
chipseq_peak_6555	chr17	94340302	94340990	+	0	NA	Intergenic	Intergenic	409246	NM_176917	76781	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding
chipseq_peak_11582	chr6	73247485	73248109	+	0	NA	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	-708	NM_019879	56451	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding
chipseq_peak_6796	chr18	45719833	45720276	+	0	NA	intron (NR_040342, intron 3 of 3)	MLT2B4|LTR|ERVL	159900	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding
chipseq_peak_6680	chr18	26584334	26584938	+	0	NA	Intergenic	Intergenic	-830653	NM_001146294	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
chipseq_peak_876	chr1	141999549	142000335	+	0	NA	Intergenic	Intergenic	-1343540	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_12443	chr7	112223124	112223669	+	0	NA	Intergenic	Intergenic	-2440	NM_177282	320878	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
chipseq_peak_2798	chr12	31579070	31579449	+	0	NA	Intergenic	Intergenic	-19290	NM_011867	23985	Mm.100187	NM_011867	ENSMUSG00000020651	Slc26a4	Pds|pendrin	solute carrier family 26, member 4	protein-coding
chipseq_peak_7782	chr2	60722481	60723447	+	0	NA	promoter-TSS (NM_001159564)	promoter-TSS (NM_001159564)	-361	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding
chipseq_peak_9146	chr3	118361747	118362167	+	0	NA	Intergenic	Intergenic	-71900	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA
chipseq_peak_7189	chr19	28366867	28367969	+	0	NA	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-310806	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_3041	chr12	60151190	60152022	+	0	NA	Intergenic	Intergenic	-932123	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_9258	chr3	136182972	136183525	+	0	NA	intron (NM_001310749, intron 6 of 15)	intron (NM_001310749, intron 6 of 15)	142818	NM_001033350	242248	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding
chipseq_peak_208	chr1	34040734	34041778	+	0	NA	intron (NM_133833, intron 1 of 92)	intron (NM_133833, intron 1 of 92)	29431	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding
chipseq_peak_320	chr1	48951415	48952742	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-1484953	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_3479	chr13	23562219	23563630	+	0	NA	promoter-TSS (NM_178205)	promoter-TSS (NM_178205)	-559	NM_178205	319151	Mm.261658	NM_178205		Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding
chipseq_peak_8188	chr2	133783874	133784336	+	0	NA	Intergenic	Intergenic	219397	NR_037273	100526500		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA
chipseq_peak_10682	chr5	76419178	76419910	+	0	NA	intron (NR_035422, intron 1 of 2)	intron (NR_035422, intron 1 of 2)	49975	NR_035422	100316839		NR_035422	ENSMUSG00000080533	Mir1191	Mirn1191|mmu-mir-1191|mmu-mir-1191a	microRNA 1191	ncRNA
chipseq_peak_11660	chr6	92640933	92641323	+	0	NA	intron (NM_001081146, intron 2 of 8)	intron (NM_001081146, intron 2 of 8)	65056	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle homolog 2 (Drosophila)	protein-coding
chipseq_peak_5576	chr16	28497392	28499625	+	0	NA	intron (NM_010199, intron 2 of 5)	LTR41|LTR|ERVL	-52433	NM_183064	14167	Mm.7996	NM_010199		Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding
chipseq_peak_12090	chr7	49442176	49442757	+	0	NA	intron (NM_001111016, intron 7 of 38)	intron (NM_001111016, intron 7 of 38)	194369	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding
chipseq_peak_7836	chr2	65690467	65691585	+	0	NA	intron (NM_001099298, intron 10 of 25)	intron (NM_001099298, intron 10 of 25)	20581	NM_001099298	110876	Mm.220329	NM_001099298	ENSMUSG00000075318	Scn2a1	6430408L10|A230052E19Rik|Nav1.2|Scn2a	sodium channel, voltage-gated, type II, alpha 1	protein-coding
chipseq_peak_3910	chr13	95106988	95107579	+	0	NA	intron (NM_172263, intron 3 of 19)	intron (NM_172263, intron 3 of 19)	115767	NM_001170669	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding
chipseq_peak_6888	chr18	57522755	57523542	+	0	NA	intron (NR_015541, intron 1 of 1)	intron (NR_015541, intron 1 of 1)	10604	NR_015541	74916	Mm.444721	NR_015541	ENSMUSG00000085800	1700066O22Rik	4930500F21Rik|4930515O13Rik|4930542C11Rik	RIKEN cDNA 1700066O22 gene	ncRNA
chipseq_peak_13622	chr9	61031369	61033234	+	0	NA	Intergenic	Intergenic	15232	NR_040767	330956	Mm.207985	NR_040767		Gm5122	A430102L10	predicted gene 5122	ncRNA
chipseq_peak_5438	chr15	97195551	97195985	+	0	NA	Intergenic	Intergenic	-51339	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding
chipseq_peak_6168	chr17	5249395	5249754	+	0	NA	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	169193	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding
chipseq_peak_984	chr1	160671664	160672881	+	0	NA	intron (NM_013862, intron 11 of 20)	intron (NM_013862, intron 11 of 20)	-94519	NM_001146330	620246	Mm.478780	NM_001146330		Gpr52	EG620246	G protein-coupled receptor 52	protein-coding
chipseq_peak_12400	chr7	97345228	97345603	+	0	NA	intron (NM_001039039, intron 1 of 1)	intron (NM_001039039, intron 1 of 1)	13092	NM_001039039	622320	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding
chipseq_peak_4787	chr15	10264250	10265218	+	0	NA	intron (NM_001253781, intron 1 of 9)	intron (NM_001253781, intron 1 of 9)	-28917	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding
chipseq_peak_11830	chr6	108738394	108738895	+	0	NA	Intergenic	Intergenic	-44415	NM_026011	67166	Mm.271178	NM_026011		Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding
chipseq_peak_1498	chr10	43023449	43024310	+	0	NA	intron (NM_175407, intron 5 of 6)	intron (NM_175407, intron 5 of 6)	150651	NM_175407	109205	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis-binding protein homolog (Drosophila)	protein-coding
chipseq_peak_9115	chr3	117307591	117308092	+	0	NA	Intergenic	Intergenic	53035	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding
chipseq_peak_3769	chr13	82483233	82483986	+	0	NA	Intergenic	Intergenic	214724	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_6202	chr17	15564599	15565087	+	0	NA	Intergenic	Intergenic	-1520	NM_144809	213389	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding
chipseq_peak_9623	chr4	24698445	24698983	+	0	NA	intron (NM_001033531, intron 4 of 9)	intron (NM_001033531, intron 4 of 9)	152372	NM_001033531	212390	Mm.412074	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding
chipseq_peak_13026	chr8	80189943	80191096	+	0	NA	Intergenic	Intergenic	-132511	NM_020259	15245	Mm.254493	NM_020259		Hhip	Hhip1	Hedgehog-interacting protein	protein-coding
chipseq_peak_7961	chr2	83105732	83107460	+	0	NA	Intergenic	Intergenic	-537982	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
chipseq_peak_13564	chr9	52545899	52546513	+	0	NA	Intergenic	Intergenic	133231	NM_178906	330941	Mm.335160	NM_177907	ENSMUSG00000078307	AI593442	E130102D23	expressed sequence AI593442	protein-coding
chipseq_peak_14049	chrX	89352651	89353314	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	56707	NM_008821	18630	Mm.3086	NM_008821	ENSMUSG00000035395	Pet2	PC231|PC326|Pex3	plasmacytoma expressed transcript 2	protein-coding
chipseq_peak_9360	chr3	149765377	149766504	+	0	NA	Intergenic	Intergenic	491203	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_10435	chr5	42509196	42509696	+	0	NA	Intergenic	Intergenic	441486	NR_131130	433882	Mm.319353	NR_131130		Gm16223	EG433882|OTTMUSG00000031875	predicted gene 16223	ncRNA
chipseq_peak_9096	chr3	115028178	115029008	+	0	NA	intron (NM_001286750, intron 1 of 5)	intron (NM_001286750, intron 1 of 5)	-52372	NM_153157	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding
chipseq_peak_11020	chr5	131698919	131699311	+	0	NA	intron (NM_177047, intron 5 of 18)	Charlie1b|DNA|hAT-Charlie	-181154	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_7904	chr2	76283380	76284193	+	0	NA	intron (NM_001081033, intron 2 of 19)	intron (NM_001081033, intron 2 of 19)	54867	NM_001081033	241489	Mm.246613	NM_001081033		Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding
chipseq_peak_10941	chr5	116655224	116655804	+	0	NA	Intergenic	Lx8|LINE|L1	-63697	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding
chipseq_peak_3251	chr12	89331464	89332729	+	0	NA	intron (NM_172544, intron 6 of 19)	intron (NM_172544, intron 6 of 19)	378706	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
chipseq_peak_6029	chr16	77234909	77238696	+	0	NA	Intergenic	Intergenic	-92526	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA
chipseq_peak_1445	chr10	33732431	33733786	+	0	NA	Intergenic	Intergenic	49007	NM_001101452	215895	Mm.473684	NM_001101452	ENSMUSG00000090298	Gm4794	EG215895|Sult3a2	predicted gene 4794	protein-coding
chipseq_peak_5974	chr16	74273173	74274088	+	0	NA	intron (NM_175549, intron 2 of 27)	RLTR31D_MM|LTR|ERVK	68437	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_14123	chrX	160955553	160956225	+	0	NA	intron (NM_001024624, intron 1 of 18)	L1M5|LINE|L1	38792	NM_001024624	382253	Mm.443717	NM_001024624	ENSMUSG00000031292	Cdkl5	BC038161|Stk9	cyclin-dependent kinase-like 5	protein-coding
chipseq_peak_160	chr1	30593610	30595650	+	0	NA	Intergenic	Intergenic	268626	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
chipseq_peak_1847	chr10	98742820	98743362	+	0	NA	Intergenic	Intergenic	-172061	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding
chipseq_peak_6648	chr18	22841215	22841916	+	0	NA	intron (NM_001161483, intron 5 of 10)	intron (NM_001161483, intron 5 of 10)	197098	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding
chipseq_peak_10181	chr4	128261110	128261591	+	0	NA	promoter-TSS (NM_027036)	promoter-TSS (NM_027036)	306	NR_130980	75242	Mm.488254	NR_130980		Hmgb4os	4930546G22Rik	high-mobility group box 4, opposite strand	ncRNA
chipseq_peak_13988	chrX	47029810	47030371	+	0	NA	Intergenic	Intergenic	701083	NM_028514	73360	Mm.60929	NM_028514	ENSMUSG00000046615	Actrt1	1700061J02Rik|Arp-T1	actin-related protein T1	protein-coding
chipseq_peak_1951	chr10	108600441	108602493	+	0	NA	intron (NM_001252342, intron 8 of 10)	intron (NM_001252342, intron 8 of 10)	98693	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding
chipseq_peak_13001	chr8	76052101	76052469	+	0	NA	Intergenic	Intergenic	603591	NM_027944	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding
chipseq_peak_12183	chr7	66989349	66990057	+	0	NA	intron (NM_001033877, intron 8 of 22)	intron (NM_001033877, intron 8 of 22)	149968	NM_001033877	233332	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding
chipseq_peak_5491	chr16	7265893	7266420	+	0	NA	intron (NM_183188, intron 2 of 12)	intron (NM_183188, intron 2 of 12)	196321	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_4594	chr14	101844828	101845143	+	0	NA	intron (NM_201529, intron 4 of 30)	intron (NM_201529, intron 4 of 30)	115057	NM_201529	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding
chipseq_peak_12473	chr7	117595260	117595826	+	0	NA	intron (NM_175645, intron 5 of 11)	intron (NM_175645, intron 5 of 11)	214564	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_13378	chr9	27496456	27498305	+	0	NA	Intergenic	Intergenic	100168	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding
chipseq_peak_13450	chr9	35424467	35425561	+	0	NA	Intergenic	Intergenic	-27062	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding
chipseq_peak_2493	chr11	88391263	88391772	+	0	NA	intron (NM_054043, intron 9 of 13)	intron (NM_054043, intron 9 of 13)	38744	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA
chipseq_peak_3933	chr13	97910966	97911595	+	0	NA	intron (NM_012026, intron 35 of 35)	intron (NM_012026, intron 35 of 35)	294885	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
chipseq_peak_8694	chr3	51095701	51097699	+	0	NA	Intergenic	Intergenic	-127747	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding
chipseq_peak_256	chr1	41103220	41105177	+	0	NA	Intergenic	Intergenic	77054	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_3036	chr12	59850659	59851253	+	0	NA	Intergenic	Intergenic	-631473	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_8155	chr2	124860457	124861043	+	0	NA	Intergenic	Intergenic	207169	NM_199241	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
chipseq_peak_9517	chr4	13262760	13262971	+	0	NA	Intergenic	Plat_L3|LINE|CR1	356028	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_10606	chr5	66708617	66708900	+	0	NA	Intergenic	Intergenic	-32261	NR_102714	101202684	Mm.381468	NR_102714	ENSMUSG00000087601	Uchl1os	Gm16832|Uchl1as	ubiquitin carboxy-terminal hydrolase L1, opposite strand	ncRNA
chipseq_peak_7047	chr18	86575370	86576186	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-135332	NM_001302356	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding
chipseq_peak_4847	chr15	18233380	18233923	+	0	NA	intron (NR_045711, intron 7 of 11)	intron (NR_045711, intron 7 of 11)	135976	NR_045711	70886	Mm.399021	NR_045711		4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA
chipseq_peak_1105	chr1	177165283	177166238	+	0	NA	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	83007	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_8636	chr3	41154893	41155629	+	0	NA	Intergenic	Intergenic	-72215	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding
chipseq_peak_4015	chr13	108037418	108037906	+	0	NA	Intergenic	Intergenic	-6812	NM_001048250	75616	Mm.491164	NM_001048250		Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding
chipseq_peak_7119	chr19	20181839	20182369	+	0	NA	Intergenic	Intergenic	208567	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding
chipseq_peak_13522	chr9	48517305	48517780	+	0	NA	Intergenic	Intergenic	22199	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding
chipseq_peak_6714	chr18	30844447	30844838	+	0	NA	Intergenic	Intergenic	472486	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_7233	chr19	36614953	36615320	+	0	NA	intron (NM_172637, intron 19 of 20)	intron (NM_172637, intron 19 of 20)	60497	NM_172637	226098	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain containing 2	protein-coding
chipseq_peak_9816	chr4	54509707	54510152	+	0	NA	Intergenic	Intergenic	-438016	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding
chipseq_peak_881	chr1	143006200	143006626	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-634284	NM_020025	26878	Mm.285580	NM_020025		B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding
chipseq_peak_78	chr1	20136141	20136842	+	0	NA	intron (NM_153179, intron 60 of 66)	intron (NM_153179, intron 60 of 66)	-219963	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA
chipseq_peak_2866	chr12	38341955	38343326	+	0	NA	intron (NM_178681, intron 20 of 24)	(GGAA)n|Simple_repeat|Simple_repeat	271881	NR_045943	73867	Mm.78933	NR_045943		4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA
chipseq_peak_11606	chr6	77358115	77358830	+	0	NA	intron (NM_145732, intron 8 of 18)	intron (NM_145732, intron 8 of 18)	24003	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA
chipseq_peak_7815	chr2	62717895	62718882	+	0	NA	intron (NM_133207, intron 13 of 15)	intron (NM_133207, intron 13 of 15)	54061	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding
chipseq_peak_10926	chr5	114576045	114576331	+	0	NA	intron (NM_001004180, intron 1 of 2)	intron (NM_001004180, intron 1 of 2)	7937	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding
chipseq_peak_4579	chr14	97435448	97436319	+	0	NA	Intergenic	Intergenic	733882	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding
chipseq_peak_6590	chr18	13677988	13679269	+	0	NA	Intergenic	Intergenic	294105	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
chipseq_peak_6461	chr17	81738259	81739751	+	0	NA	promoter-TSS (NM_011406)	promoter-TSS (NM_011406)	-618	NM_001112798	20541	Mm.265834	NM_011406		Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
chipseq_peak_3503	chr13	28856720	28857831	+	0	NA	intron (NR_045053, intron 2 of 8)	L1ME3A|LINE|L1	28147	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA
chipseq_peak_2218	chr11	26608236	26609054	+	0	NA	Intergenic	Intergenic	-14725	NM_027260	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding
chipseq_peak_14073	chrX	132789946	132790671	+	0	NA	Intergenic	Intergenic	898685	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding
chipseq_peak_4065	chr13	111044487	111045035	+	0	NA	Intergenic	Intergenic	-140915	NR_131194	102636142	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA
chipseq_peak_14144	chrX	167329991	167330381	+	0	NA	intron (NM_001290755, intron 1 of 4)	intron (NM_001290755, intron 1 of 4)	385	NM_001290755	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding
chipseq_peak_12750	chr8	38303607	38304645	+	0	NA	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	-51924	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA
chipseq_peak_13911	chr9	113081178	113082519	+	0	NA	Intergenic	Intergenic	505304	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_1062	chr1	174676302	174677040	+	0	NA	intron (NM_019445, intron 8 of 17)	intron (NM_019445, intron 8 of 17)	174846	NM_019445	54418	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding
chipseq_peak_5434	chr15	96233617	96233964	+	0	NA	intron (NR_130160, intron 2 of 2)	intron (NR_130160, intron 2 of 2)	20894	NR_130160	75768	Mm.212701	NR_130160	ENSMUSG00000097619	4833422M21Rik	4933406G12Rik	RIKEN cDNA 4833422M21 gene	ncRNA
chipseq_peak_11736	chr6	101319205	101319634	+	0	NA	intron (NM_018884, intron 3 of 9)	intron (NM_018884, intron 3 of 9)	58478	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
chipseq_peak_12377	chr7	94841245	94842049	+	0	NA	Intergenic	Intergenic	-1329597	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
chipseq_peak_2153	chr11	15655938	15656220	+	0	NA	Intergenic	Intergenic	-601645	NM_145967	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding
chipseq_peak_797	chr1	131452581	131452972	+	0	NA	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	74585	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding
chipseq_peak_9207	chr3	124453132	124453702	+	0	NA	Intergenic	Intergenic	-27389	NM_027939	71824	Mm.331353	NM_027939	ENSMUSG00000027973	1700006A11Rik	-	RIKEN cDNA 1700006A11 gene	protein-coding
chipseq_peak_10991	chr5	126527655	126528640	+	0	NA	Intergenic	Intergenic	-502642	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA
chipseq_peak_12166	chr7	62388382	62388616	+	0	NA	Intergenic	Intergenic	11520	NM_013779	27385	Mm.45207	NM_013779	ENSMUSG00000056972	Magel2	Mage-l2|NDNL1|nM15|ns7	melanoma antigen, family L, 2	protein-coding
chipseq_peak_1474	chr10	39049065	39051054	+	0	NA	intron (NM_010681, intron 11 of 37)	intron (NM_010681, intron 11 of 37)	83836	NM_183254	66337	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding
chipseq_peak_4548	chr14	93599759	93600398	+	0	NA	intron (NM_001081377, intron 1 of 3)	intron (NM_001081377, intron 1 of 3)	288810	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_2150	chr11	15027133	15028074	+	0	NA	Intergenic	Intergenic	428363	NM_001164166	432536	Mm.33646	NM_001164166		Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding
chipseq_peak_6092	chr16	87567503	87568574	+	0	NA	intron (NM_144854, intron 2 of 4)	intron (NM_144854, intron 2 of 4)	14708	NM_144854	224419	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding
chipseq_peak_4205	chr14	24784154	24784560	+	0	NA	Intergenic	L1MC|LINE|L1	293676	NM_207634	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding
chipseq_peak_2037	chr10	119966433	119966847	+	0	NA	intron (NM_001277293, intron 7 of 24)	intron (NM_001277293, intron 7 of 24)	-26282	NM_001277295	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding
chipseq_peak_5501	chr16	10379713	10380013	+	0	NA	intron (NM_001291001, intron 4 of 6)	Tigger7|DNA|TcMar-Tigger	15585	NM_001099275	70426	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding
chipseq_peak_13755	chr9	91824054	91824713	+	0	NA	Intergenic	Intergenic	-368553	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding
chipseq_peak_14046	chrX	85046094	85047069	+	0	NA	intron (NM_007868, intron 62 of 78)	intron (NM_007868, intron 62 of 78)	-1714	NM_001314038	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding
chipseq_peak_3523	chr13	29855513	29855944	+	0	NA	promoter-TSS (NM_144536)	promoter-TSS (NM_144536)	-55	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
chipseq_peak_13387	chr9	27828861	27829158	+	0	NA	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	37740	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_3888	chr13	92300466	92301114	+	0	NA	intron (NM_001311120, intron 10 of 23)	intron (NM_001311120, intron 10 of 23)	-53993	NM_010049	13361	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding
chipseq_peak_321	chr1	49099155	49100465	+	0	NA	Intergenic	Intergenic	-1632685	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_6998	chr18	71664792	71665502	+	0	NA	intron (NM_007831, intron 7 of 28)	intron (NM_007831, intron 7 of 28)	685922	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
chipseq_peak_2276	chr11	38770478	38770961	+	0	NA	Intergenic	Intergenic	-250674	NR_040295	100502917	Mm.61144	NR_040295		Gm12130	OTTMUSG00000005424	predicted gene 12130	ncRNA
chipseq_peak_10090	chr4	103629957	103630634	+	0	NA	Intergenic	Intergenic	247795	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA
chipseq_peak_6049	chr16	78427298	78427741	+	0	NA	Intergenic	Intergenic	-50338	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding
chipseq_peak_12188	chr7	68105138	68105810	+	0	NA	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	153217	NM_010513	16001	Mm.275742	NM_010513		Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding
chipseq_peak_8248	chr2	140482632	140483300	+	0	NA	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	87531	NM_028387	72899	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding
chipseq_peak_3156	chr12	74142068	74142842	+	0	NA	intron (NM_172804, intron 2 of 6)	intron (NM_172804, intron 2 of 6)	-141821	NR_030735	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA
chipseq_peak_2713	chr12	14292086	14292426	+	0	NA	Intergenic	Intergenic	30722	NR_045003	791361	Mm.217963	NR_045003		Gm16497	ENSMUSG00000066623	predicted gene 16497	ncRNA
chipseq_peak_7820	chr2	63153593	63154437	+	0	NA	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	30272	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
chipseq_peak_9646	chr4	26965818	26966306	+	0	NA	Intergenic	Lx8b|LINE|L1	-260613	NR_040656	75360	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA
chipseq_peak_11056	chr5	133940802	133941207	+	0	NA	Intergenic	Intergenic	-158744	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
chipseq_peak_2529	chr11	101363063	101363465	+	0	NA	Intergenic	Intergenic	-4452	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding
chipseq_peak_11126	chr5	150168703	150169051	+	0	NA	Intergenic	Intergenic	-91053	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	furry homolog (Drosophila)	protein-coding
chipseq_peak_6365	chr17	64581113	64582128	+	0	NA	Intergenic	Intergenic	-20029	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding
chipseq_peak_2430	chr11	77827238	77827595	+	0	NA	intron (NM_001291212, intron 15 of 40)	intron (NM_001291212, intron 15 of 40)	26118	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ	myosin XVIIIA	protein-coding
chipseq_peak_7449	chr2	9352046	9352644	+	0	NA	Intergenic	Intergenic	162830	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_10437	chr5	42552354	42553111	+	0	NA	Intergenic	Intergenic	484772	NR_131130	433882	Mm.319353	NR_131130		Gm16223	EG433882|OTTMUSG00000031875	predicted gene 16223	ncRNA
chipseq_peak_1984	chr10	110794700	110795196	+	0	NA	Intergenic	Intergenic	49483	NM_178609	52679	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e	E2F transcription factor 7	protein-coding
chipseq_peak_6105	chr16	90351653	90353714	+	0	NA	Intergenic	Intergenic	-33714	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding
chipseq_peak_53	chr1	16934473	16934868	+	0	NA	Intergenic	Intergenic	163219	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding
chipseq_peak_10215	chr4	148058984	148059653	+	0	NA	non-coding (NR_027809, exon 13 of 13)	non-coding (NR_027809, exon 13 of 13)	18129	NM_001161798	17769	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	5,10-methylenetetrahydrofolate reductase	protein-coding
chipseq_peak_11269	chr6	22097343	22098296	+	0	NA	intron (NM_001081351, intron 6 of 21)	intron (NM_001081351, intron 6 of 21)	111909	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding
chipseq_peak_9715	chr4	34089382	34089891	+	0	NA	Intergenic	Intergenic	-39569	NM_026293	67652	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding
chipseq_peak_7997	chr2	96166434	96167063	+	0	NA	Intergenic	Intergenic	-151421	NM_001289743	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_9569	chr4	18062396	18062862	+	0	NA	intron (NM_019724, intron 6 of 9)	intron (NM_019724, intron 6 of 9)	209147	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_14055	chrX	95808258	95808722	+	0	NA	intron (NM_001034907, intron 3 of 8)	L1_Rod|LINE|L1	-75225	NM_029590	76386	Mm.443249	NM_029590		1700010D01Rik	-	RIKEN cDNA 1700010D01 gene	protein-coding
chipseq_peak_12489	chr7	121294112	121294615	+	0	NA	Intergenic	Intergenic	-97933	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
chipseq_peak_8000	chr2	96351838	96352758	+	0	NA	intron (NM_001289742, intron 1 of 7)	intron (NM_001289742, intron 1 of 7)	34129	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_2706	chr12	13209878	13210391	+	0	NA	Intergenic	Intergenic	39040	NM_134040	104721	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding
chipseq_peak_14001	chrX	52179856	52180079	+	0	NA	Intergenic	Intergenic	-15044	NM_008150	14735	Mm.1528	NM_008150	ENSMUSG00000031119	Gpc4	9530073D23Rik|AF311610|AI385680|AI661372|K-glypican	glypican 4	protein-coding
chipseq_peak_79	chr1	20360069	20360735	+	0	NA	intron (NM_153179, intron 45 of 66)	intron (NM_153179, intron 45 of 66)	3948	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA
chipseq_peak_13838	chr9	104127571	104128470	+	0	NA	TTS (NM_175324)	TTS (NM_175324)	-1377	NM_145700	252837	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding
chipseq_peak_11655	chr6	92394742	92395838	+	0	NA	intron (NM_001134460, intron 7 of 7)	intron (NM_001134460, intron 7 of 7)	86102	NM_001134460	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle homolog 2 (Drosophila)	protein-coding
chipseq_peak_6842	chr18	54121019	54121985	+	0	NA	Intergenic	Intergenic	259389	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
chipseq_peak_7283	chr19	49880491	49881425	+	0	NA	Intergenic	Intergenic	797688	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_12292	chr7	88819375	88820506	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	389667	NM_028238	72433	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding
chipseq_peak_1137	chr1	179935470	179936136	+	0	NA	Intergenic	Intergenic	-25286	NM_001033285	226751	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding
chipseq_peak_7497	chr2	20436816	20437032	+	0	NA	intron (NM_001081006, intron 2 of 21)	intron (NM_001081006, intron 2 of 21)	-73123	NM_178059	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
chipseq_peak_1125	chr1	178218824	178219150	+	0	NA	intron (NM_024282, intron 1 of 4)	Charlie22a|DNA|hAT-Charlie	31570	NM_024282	78825	Mm.440132	NM_024282		Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding
chipseq_peak_5015	chr15	40425555	40425912	+	0	NA	Intergenic	Lx8|LINE|L1	101544	NR_046185	432945	Mm.321981	NR_046185	ENSMUSG00000056332	Gm16294	EG432945|OTTMUSG00000033304	predicted gene 16294	ncRNA
chipseq_peak_2614	chr11	114499303	114500083	+	0	NA	intron (NR_037269, intron 2 of 4)	intron (NR_037269, intron 2 of 4)	-50833	NR_027643	319819	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA
chipseq_peak_8412	chr2	173301006	173301368	+	0	NA	Intergenic	L1ME4a|LINE|L1	-24654	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding
chipseq_peak_935	chr1	152468589	152469109	+	0	NA	intron (NM_177756, intron 2 of 11)	intron (NM_177756, intron 2 of 11)	68982	NM_177756	269132	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding
chipseq_peak_6036	chr16	77660476	77662606	+	0	NA	Intergenic	Intergenic	15268	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_11312	chr6	27688632	27690265	+	0	NA	intron (NM_008174, intron 6 of 10)	intron (NM_008174, intron 6 of 10)	247302	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA
chipseq_peak_9641	chr4	26709832	26710707	+	0	NA	Intergenic	Intergenic	-4820	NR_040656	75360	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA
chipseq_peak_7435	chr2	8431361	8432334	+	0	NA	Intergenic	Intergenic	-757668	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_1703	chr10	72001956	72004041	+	0	NA	Intergenic	Intergenic	-22308	NR_003644	108950	Mm.212793	NM_175390	ENSMUSG00000043859	1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo
chipseq_peak_10940	chr5	116552527	116552964	+	0	NA	intron (NM_026886, intron 1 of 12)	RLTR17B_Mm|LTR|ERVK	39072	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding
chipseq_peak_12498	chr7	122500036	122500620	+	0	NA	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	-171416	NM_019430	54376	Mm.444212	NM_019430		Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
chipseq_peak_7417	chr2	7954174	7954561	+	0	NA	Intergenic	Intergenic	-558169	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_5386	chr15	92004705	92005324	+	0	NA	Intergenic	Intergenic	-46151	NM_001159648	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding
chipseq_peak_14067	chrX	120524994	120525500	+	0	NA	intron (NR_073452, intron 3 of 6)	intron (NR_073452, intron 3 of 6)	-212021	NM_001281531	624957		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding
chipseq_peak_350	chr1	54734068	54735824	+	0	NA	intron (NM_001081433, intron 12 of 27)	intron (NM_001081433, intron 12 of 27)	-177262	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding
chipseq_peak_4731	chr14	119528550	119529448	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	-220228	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA
chipseq_peak_9477	chr4	7567842	7568925	+	0	NA	intron (NR_040645, intron 2 of 2)	intron (NR_040645, intron 2 of 2)	7695	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA
chipseq_peak_1068	chr1	175550528	175551049	+	0	NA	Intergenic	Intergenic	-58243	NM_001199003	24012	Mm.7956	NM_011880	ENSMUSG00000026527	Rgs7	-	regulator of G protein signaling 7	protein-coding
chipseq_peak_9218	chr3	127148607	127149048	+	0	NA	Intergenic	Intergenic	-12478	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA
chipseq_peak_13856	chr9	106317974	106318688	+	0	NA	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	37270	NM_027354	70235	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a	POC1 centriolar protein homolog A (Chlamydomonas)	protein-coding
chipseq_peak_11898	chr6	120715763	120716113	+	0	NA	intron (NM_001128151, intron 1 of 18)	intron (NM_001128151, intron 1 of 18)	49517	NM_001128151	330409	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	cat eye syndrome chromosome region, candidate 2	protein-coding
chipseq_peak_14115	chrX	158924939	158925514	+	0	NA	Intergenic	Intergenic	-330556	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding
chipseq_peak_2364	chr11	57521224	57522800	+	0	NA	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	3347	NM_180599	216760	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding
chipseq_peak_12153	chr7	57512781	57513315	+	0	NA	Intergenic	Intergenic	-3039	NM_176942	110886	Mm.273114	NM_176942	ENSMUSG00000055078	Gabra5	A230018I05Rik	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5	protein-coding
chipseq_peak_11607	chr6	77381251	77381659	+	0	NA	non-coding (NR_045141, exon 1 of 1)	non-coding (NR_045141, exon 1 of 1)	1020	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA
chipseq_peak_12052	chr7	30626184	30626591	+	0	NA	promoter-TSS (NM_025628)	promoter-TSS (NM_025628)	-236	NM_025628	110323	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding
chipseq_peak_7166	chr19	26319022	26319458	+	0	NA	Intergenic	Intergenic	-285920	NM_011416	67155	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
chipseq_peak_8143	chr2	123002022	123002742	+	0	NA	Intergenic	Intergenic	220383	NM_021507	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding
chipseq_peak_6217	chr17	29993192	29993815	+	0	NA	Intergenic	Intergenic	-11584	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding
chipseq_peak_10908	chr5	111761136	111762539	+	0	NA	promoter-TSS (NR_045832)	promoter-TSS (NR_045832)	-109	NR_045832	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA
chipseq_peak_8494	chr3	18704214	18705635	+	0	NA	Intergenic	Intergenic	-224447	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
chipseq_peak_2103	chr10	126957020	126958007	+	0	NA	Intergenic	Intergenic	-21204	NM_001113470	52468	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding
chipseq_peak_2460	chr11	82521370	82521727	+	0	NA	Intergenic	Intergenic	-111805	NR_033582	791422	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	OTTMUSG00000000913	predicted gene 11426	ncRNA
chipseq_peak_4196	chr14	22179871	22180322	+	0	NA	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	160384	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding
chipseq_peak_831	chr1	137545660	137546389	+	0	NA	Intergenic	Intergenic	-420431	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA
chipseq_peak_8326	chr2	154525413	154525744	+	0	NA	intron (NM_001285446, intron 8 of 10)	intron (NM_001285446, intron 8 of 10)	-23326	NM_029305	75480	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding
chipseq_peak_11900	chr6	121039341	121039848	+	0	NA	intron (NM_001270475, intron 3 of 31)	intron (NM_001270475, intron 3 of 31)	42033	NM_153396	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
chipseq_peak_8568	chr3	29399073	29399815	+	0	NA	intron (NM_029412, intron 5 of 14)	intron (NM_029412, intron 5 of 14)	-17379	NR_030422	791072		NR_030422	ENSMUSG00000076120	Mir551b	Mirn551b|mir-551b	microRNA 551b	ncRNA
chipseq_peak_1425	chr10	31144138	31144683	+	0	NA	Intergenic	Intergenic	-168995	NM_027168	69692	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding
chipseq_peak_6501	chr17	88527758	88528106	+	0	NA	Intergenic	Intergenic	-2192	NM_028658	73825	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding
chipseq_peak_9018	chr3	94473143	94474171	+	0	NA	promoter-TSS (NM_025506)	promoter-TSS (NM_025506)	-66	NM_025506	66353	Mm.46405	NM_025506	ENSMUSG00000028139	Riiad1	2310007A19Rik|Ncrna00166	regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1	protein-coding
chipseq_peak_12752	chr8	38522581	38523046	+	0	NA	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	138695	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding
chipseq_peak_8054	chr2	107040505	107041065	+	0	NA	Intergenic	Intergenic	18866	NM_008045	14308	Mm.249525	NM_008045	ENSMUSG00000027120	Fshb	FSH|FSH-B|FSH-beta|Fshbeta	follicle stimulating hormone beta	protein-coding
chipseq_peak_10761	chr5	85337880	85339183	+	0	NA	Intergenic	Intergenic	727052	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_1329	chr10	20577154	20577603	+	0	NA	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	147690	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding
chipseq_peak_8552	chr3	28333861	28335234	+	0	NA	intron (NM_001163007, intron 1 of 31)	MER34A|LTR|ERV1	71333	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding
chipseq_peak_7446	chr2	8638045	8638442	+	0	NA	Intergenic	Intergenic	-551272	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_13368	chr9	26604534	26605064	+	0	NA	Intergenic	Intergenic	-129009	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding
chipseq_peak_833	chr1	137605924	137607299	+	0	NA	Intergenic	Intergenic	-359844	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA
chipseq_peak_7548	chr2	35930281	35931586	+	0	NA	intron (NM_029774, intron 3 of 9)	intron (NM_029774, intron 3 of 9)	48691	NM_029774	74410	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding
chipseq_peak_3636	chr13	53101558	53102963	+	0	NA	Intergenic	L1MB8|LINE|L1	-121221	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding
chipseq_peak_3579	chr13	45053948	45054165	+	0	NA	Intergenic	B4|SINE|B4	-51960	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding
chipseq_peak_4095	chr13	114874754	114875163	+	0	NA	intron (NM_008396, intron 9 of 29)	intron (NM_008396, intron 9 of 29)	56721	NM_001113375	17434	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding
chipseq_peak_5511	chr16	12516818	12517304	+	0	NA	Intergenic	Intergenic	-294329	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA
chipseq_peak_9550	chr4	15608534	15608984	+	0	NA	Intergenic	Intergenic	-272505	NM_009788	12307	Mm.277665	NM_009788		Calb1	Brain-2|CB|Calb|Calb-1	calbindin 1	protein-coding
chipseq_peak_2245	chr11	35517327	35517630	+	0	NA	intron (NM_011412, intron 5 of 35)	(TTAA)n|Simple_repeat|Simple_repeat	-99338	NR_029799	723924		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA
chipseq_peak_2759	chr12	26635281	26636034	+	0	NA	Intergenic	Intergenic	166442	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
chipseq_peak_12914	chr8	58566142	58566473	+	0	NA	intron (NM_175032, intron 1 of 11)	intron (NM_175032, intron 1 of 11)	134489	NM_001177534	100271928	Mm.484123	NM_001177534		Gm15881	OTTMUSG00000027193	predicted gene 15881	protein-coding
chipseq_peak_7468	chr2	14070324	14070956	+	0	NA	non-coding (NR_038162, exon 2 of 2)	non-coding (NR_038162, exon 2 of 2)	3294	NR_038162	70957	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA
chipseq_peak_56	chr1	17163489	17163879	+	0	NA	3' UTR (NM_010267, exon 6 of 6)	3' UTR (NM_010267, exon 6 of 6)	18311	NM_010267	14545	Mm.18218	NM_010267	ENSMUSG00000025777	Gdap1	-	ganglioside-induced differentiation-associated-protein 1	protein-coding
chipseq_peak_6691	chr18	29445026	29445419	+	0	NA	intron (NR_045391, intron 4 of 7)	intron (NR_045391, intron 4 of 7)	3022	NR_045395	78199	Mm.243850	NR_045395		4930527G23Rik	-	RIKEN cDNA 4930527G23 gene	ncRNA
chipseq_peak_8316	chr2	147751773	147752319	+	0	NA	Intergenic	Intergenic	41353	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA
chipseq_peak_11216	chr6	14358097	14358826	+	0	NA	Intergenic	Intergenic	396813	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding
chipseq_peak_4261	chr14	37881631	37882483	+	0	NA	Intergenic	Intergenic	-746735	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
chipseq_peak_12385	chr7	96417404	96417948	+	0	NA	intron (NM_001310760, intron 2 of 32)	intron (NM_001310760, intron 2 of 32)	-75712	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA
chipseq_peak_1404	chr10	28811932	28813253	+	0	NA	intron (NM_001305663, intron 5 of 5)	intron (NM_001305663, intron 5 of 5)	110915	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo
chipseq_peak_7401	chr2	7400232	7402229	+	0	NA	Intergenic	Intergenic	-5032	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_3905	chr13	94267167	94267537	+	0	NA	intron (NM_029153, intron 1 of 8)	intron (NM_029153, intron 1 of 8)	17929	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding
chipseq_peak_14077	chrX	135080774	135081587	+	0	NA	Intergenic	Intergenic	-20844	NR_040282	320606	Mm.439072	NR_040281	ENSMUSG00000089759	3632454L22Rik	-	RIKEN cDNA 3632454L22 gene	ncRNA
chipseq_peak_10489	chr5	49916912	49917430	+	0	NA	Intergenic	Intergenic	141825	NM_133911	70693	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding
chipseq_peak_13930	chr9	113792850	113794616	+	0	NA	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	403	NM_001286603	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding
chipseq_peak_4234	chr14	31933371	31934824	+	0	NA	Intergenic	Intergenic	-95006	NM_030166	78754	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
chipseq_peak_4628	chr14	106677653	106678387	+	0	NA	Intergenic	Intergenic	-191500	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
chipseq_peak_3493	chr13	26503673	26504097	+	0	NA	Intergenic	Intergenic	-191479	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA
chipseq_peak_13808	chr9	101083673	101084351	+	0	NA	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	9250	NM_001100451	77853	Mm.326206	NM_001100451		Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding
chipseq_peak_4156	chr14	13651571	13652195	+	0	NA	Intergenic	Intergenic	-18993	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding
chipseq_peak_5805	chr16	57823474	57823761	+	0	NA	Intergenic	Intergenic	-68880	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding
chipseq_peak_12271	chr7	82657289	82658989	+	0	NA	exon (NM_001159672, exon 4 of 20)	exon (NM_001159672, exon 4 of 20)	9525	NM_175317	101592	Mm.238020	NM_175317	ENSMUSG00000038563	Eftud1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e	elongation factor Tu GTP binding domain containing 1	protein-coding
chipseq_peak_3553	chr13	42671461	42672465	+	0	NA	Intergenic	Intergenic	-8836	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_13908	chr9	113054244	113054960	+	0	NA	Intergenic	L1M5|LINE|L1	532550	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_2261	chr11	37451154	37452304	+	0	NA	Intergenic	Intergenic	-207260	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	OTTMUSG00000005422	predicted gene 12128	ncRNA
chipseq_peak_447	chr1	63934560	63935139	+	0	NA	Intergenic	Intergenic	-29878	NR_027824	433315	Mm.342696	NM_001013800	ENSMUSG00000044689	Gm13749	OTTMUSG00000013918	predicted gene 13749	ncRNA
chipseq_peak_9827	chr4	56284504	56285254	+	0	NA	Intergenic	Intergenic	456546	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding
chipseq_peak_3404	chr13	6535327	6535943	+	0	NA	Intergenic	Intergenic	-12522	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding
chipseq_peak_6305	chr17	52920436	52921488	+	0	NA	intron (NM_001031811, intron 11 of 15)	intron (NM_001031811, intron 11 of 15)	318253	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
chipseq_peak_13671	chr9	71974220	71975346	+	0	NA	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	11342	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA
chipseq_peak_3961	chr13	101214772	101215733	+	0	NA	Intergenic	Intergenic	-16875	NR_046158	328324	Mm.402274	NR_046158		5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA
chipseq_peak_503	chr1	71673640	71675207	+	0	NA	Intergenic	Intergenic	21088	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA
chipseq_peak_3885	chr13	92217174	92217710	+	0	NA	intron (NM_001311120, intron 22 of 23)	intron (NM_001311120, intron 22 of 23)	-137341	NM_010049	13361	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding
chipseq_peak_12822	chr8	48319485	48321053	+	0	NA	intron (NM_011857, intron 11 of 28)	intron (NM_011857, intron 11 of 28)	210256	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding
chipseq_peak_12148	chr7	56582915	56583343	+	0	NA	Intergenic	MLT1F-int|LTR|ERVL-MaLR	343358	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p	oculocutaneous albinism II	protein-coding
chipseq_peak_12599	chr8	7721458	7722762	+	0	NA	Intergenic	Intergenic	938663	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_8351	chr2	160510861	160511180	+	0	NA	Intergenic	Intergenic	-134877	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding
chipseq_peak_2860	chr12	37763597	37764192	+	0	NA	Intergenic	Intergenic	-116811	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding
chipseq_peak_9523	chr4	13586568	13587506	+	0	NA	Intergenic	Intergenic	-156265	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_11687	chr6	97419693	97420407	+	0	NA	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	-167270	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding
chipseq_peak_11558	chr6	62198778	62199443	+	0	NA	intron (NM_001164316, intron 10 of 10)	intron (NM_001164316, intron 10 of 10)	-1018300	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
chipseq_peak_9417	chr3	155670726	155671477	+	0	NA	Intergenic	Intergenic	-305253	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
chipseq_peak_6288	chr17	50954197	50954867	+	0	NA	intron (NM_028162, intron 8 of 21)	intron (NM_028162, intron 8 of 21)	204846	NM_001285993	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding
chipseq_peak_6547	chr17	93362664	93364262	+	0	NA	Intergenic	Intergenic	164295	NM_001315504	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
chipseq_peak_1894	chr10	102444879	102445323	+	0	NA	Intergenic	Intergenic	45317	NM_024435	67405	Mm.64201	NM_024435	ENSMUSG00000019890	Nts	5033428E16Rik|NMN-125|NN|NT|NT/N|NTS1	neurotensin	protein-coding
chipseq_peak_3053	chr12	61842569	61843085	+	0	NA	intron (NM_001310586, intron 3 of 5)	intron (NM_001310586, intron 3 of 5)	319660	NM_178714	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
chipseq_peak_8387	chr2	170503080	170503449	+	0	NA	non-coding (NR_040367, exon 2 of 3)	non-coding (NR_040367, exon 2 of 3)	-6119	NM_009996	13081	Mm.6575	NM_009996	ENSMUSG00000038567	Cyp24a1	24-OHase|CP24|Cyp24	cytochrome P450, family 24, subfamily a, polypeptide 1	protein-coding
chipseq_peak_13320	chr9	16002926	16003856	+	0	NA	intron (NM_001080814, intron 8 of 24)	intron (NM_001080814, intron 8 of 24)	-128835	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
chipseq_peak_1770	chr10	90081664	90082073	+	0	NA	intron (NM_001128086, intron 8 of 24)	intron (NM_001128086, intron 8 of 24)	208359	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_2662	chr12	7264614	7266144	+	0	NA	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	114951	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_11315	chr6	28338771	28339100	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	-77334	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding
chipseq_peak_12151	chr7	57037499	57038223	+	0	NA	intron (NM_008074, intron 3 of 9)	intron (NM_008074, intron 3 of 9)	349010	NM_008074	14407	Mm.434343	NM_008074		Gabrg3	B230362M20Rik|Gabrg-3	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	protein-coding
chipseq_peak_8003	chr2	97165444	97166458	+	0	NA	intron (NM_001289743, intron 4 of 6)	intron (NM_001289743, intron 4 of 6)	-301706	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_2457	chr11	81612560	81613599	+	0	NA	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	-39540	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding
chipseq_peak_4337	chr14	61753377	61753861	+	0	NA	Intergenic	Intergenic	-71246	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA
chipseq_peak_3160	chr12	74268374	74269650	+	0	NA	Intergenic	Intergenic	-15264	NR_030735	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA
chipseq_peak_7700	chr2	52210637	52211861	+	0	NA	intron (NM_010889, intron 90 of 156)	intron (NM_010889, intron 90 of 156)	-79753	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA
chipseq_peak_3810	chr13	83746605	83751309	+	0	NA	Intergenic	Intergenic	10143	NR_029545	723967		NR_029545	ENSMUSG00000065424	Mir9-2	Mirn9-2|mir-9-2|mmu-mir-9-2	microRNA 9-2	ncRNA
chipseq_peak_13134	chr8	101097651	101098466	+	0	NA	Intergenic	Intergenic	1681384	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
chipseq_peak_4933	chr15	27361154	27362008	+	0	NA	Intergenic	Intergenic	-105096	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding
chipseq_peak_12969	chr8	66779318	66780302	+	0	NA	Intergenic	Intergenic	-80407	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 homolog (S. cerevisiae)	protein-coding
chipseq_peak_8996	chr3	85661877	85662693	+	0	NA	intron (NM_172682, intron 11 of 11)	L3b|LINE|CR1	83924	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding
chipseq_peak_7408	chr2	7578009	7579672	+	0	NA	Intergenic	Intergenic	-182642	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_7670	chr2	47879137	47880027	+	0	NA	Intergenic	Intergenic	-934527	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_6361	chr17	64130285	64130865	+	0	NA	intron (NM_001286415, intron 15 of 17)	intron (NM_001286415, intron 15 of 17)	-79903	NR_130982	68771	Mm.443351	NR_130982		1110058D11Rik	-	RIKEN cDNA 1110058D11 gene	ncRNA
chipseq_peak_4673	chr14	113867269	113868040	+	0	NA	Intergenic	Intergenic	-964311	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_2001	chr10	113369025	113369675	+	0	NA	Intergenic	Intergenic	-217228	NR_035418	100316831		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA
chipseq_peak_4033	chr13	109440177	109441707	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	116198	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_7249	chr19	42902031	42902341	+	0	NA	intron (NM_001081257, intron 9 of 11)	Mam_R4|LINE|Dong-R4	-122210	NM_019424	192236	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	Hermansky-Pudlak syndrome 1 homolog (human)	protein-coding
chipseq_peak_12175	chr7	64900264	64900634	+	0	NA	intron (NM_183087, intron 2 of 9)	intron (NM_183087, intron 2 of 9)	-27409	NM_023239	66647	Mm.19944	NM_023239		Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|mage-g1	necdin-like 2	protein-coding
chipseq_peak_9718	chr4	34371580	34372070	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-178790	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding
chipseq_peak_10449	chr5	44653168	44653730	+	0	NA	intron (NM_001077398, intron 2 of 8)	intron (NM_001077398, intron 2 of 8)	146297	NM_001077398	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding
chipseq_peak_13557	chr9	52056894	52057308	+	0	NA	intron (NM_001104617, intron 1 of 10)	intron (NM_001104617, intron 1 of 10)	-8396	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_13803	chr9	98538561	98538997	+	0	NA	Intergenic	Intergenic	24832	NR_029444	75881	Mm.483402	NM_175227	ENSMUSG00000051074	4930579K19Rik	-	RIKEN cDNA 4930579K19 gene	ncRNA
chipseq_peak_12091	chr7	49490770	49491251	+	0	NA	intron (NM_001111016, intron 11 of 38)	intron (NM_001111016, intron 11 of 38)	145825	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding
chipseq_peak_10172	chr4	126781932	126783380	+	0	NA	intron (NM_001035525, intron 2 of 23)	intron (NM_001035525, intron 2 of 23)	28886	NM_001035526	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|Kiaa0319l	expressed sequence AU040320	protein-coding
chipseq_peak_8096	chr2	113236775	113237544	+	0	NA	intron (NR_035479, intron 2 of 3)	intron (NR_035479, intron 2 of 3)	16972	NR_035479	100316776		NR_035479	ENSMUSG00000093336	Mir1954	mmu-mir-1954	microRNA 1954	ncRNA
chipseq_peak_3085	chr12	67008834	67009680	+	0	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	213292	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
chipseq_peak_7772	chr2	58645715	58646283	+	0	NA	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	78665	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
chipseq_peak_9157	chr3	119591256	119591592	+	0	NA	Intergenic	Intergenic	191964	NM_019550	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
chipseq_peak_2638	chr12	5599981	5600364	+	0	NA	Intergenic	Intergenic	223670	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA
chipseq_peak_1938	chr10	106870012	106870990	+	0	NA	intron (NM_001205341, intron 21 of 31)	intron (NM_001205341, intron 21 of 31)	253163	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding
chipseq_peak_2448	chr11	80622287	80623816	+	0	NA	intron (NM_177390, intron 16 of 21)	intron (NM_177390, intron 16 of 21)	-113945	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA
chipseq_peak_1852	chr10	98959359	98960068	+	0	NA	intron (NM_026482, intron 1 of 20)	intron (NM_026482, intron 1 of 20)	44561	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding
chipseq_peak_102	chr1	22476187	22476696	+	0	NA	intron (NM_001012625, intron 12 of 14)	intron (NM_001012625, intron 12 of 14)	-43598	NM_183018	116837	Mm.60061	NM_053270		Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding
chipseq_peak_1015	chr1	166753038	166753626	+	0	NA	Intergenic	Intergenic	-71487	NM_172844	240894	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding
chipseq_peak_6895	chr18	58155423	58156601	+	0	NA	intron (NM_010181, intron 5 of 64)	intron (NM_010181, intron 5 of 64)	53914	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding
chipseq_peak_11004	chr5	129417535	129417858	+	0	NA	Intergenic	Intergenic	-83535	NM_172276	231769	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding
chipseq_peak_8587	chr3	33305727	33306663	+	0	NA	Intergenic	Intergenic	-163004	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding
chipseq_peak_12286	chr7	87486091	87487214	+	0	NA	intron (NM_011661, intron 1 of 4)	intron (NM_011661, intron 1 of 4)	6759	NM_011661	22173	Mm.238127	NM_011661	ENSMUSG00000004651	Tyr	Oca1|albino|c|skc35	tyrosinase	protein-coding
chipseq_peak_9427	chr3	156979967	156981683	+	0	NA	intron (NM_001039094, intron 2 of 6)	intron (NM_001039094, intron 2 of 6)	419031	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding
chipseq_peak_10166	chr4	124606988	124607450	+	0	NA	Intergenic	Intergenic	38040	NR_045819	108809	Mm.250313	NR_045819		4933407E24Rik	-	RIKEN cDNA 4933407E24 gene	ncRNA
chipseq_peak_13653	chr9	64788111	64789492	+	0	NA	Intergenic	B3|SINE|B2	-22210	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding
chipseq_peak_5283	chr15	69016599	69016917	+	0	NA	intron (NM_010158, intron 3 of 8)	intron (NM_010158, intron 3 of 8)	88338	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
chipseq_peak_3869	chr13	90643145	90644137	+	0	NA	Intergenic	Intergenic	261714	NM_001145879	435376	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
chipseq_peak_11379	chr6	36776977	36778026	+	0	NA	intron (NM_008973, intron 1 of 4)	intron (NM_008973, intron 1 of 4)	33860	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_1665	chr10	68274928	68281075	+	0	NA	exon (NM_023598, exon 2 of 10)	exon (NM_023598, exon 2 of 10)	725	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding
chipseq_peak_13652	chr9	64785967	64786497	+	0	NA	Intergenic	Intergenic	-24779	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding
chipseq_peak_4370	chr14	65612478	65612922	+	0	NA	intron (NM_001195674, intron 6 of 18)	intron (NM_001195674, intron 6 of 18)	7433	NM_001195674	100503545	Mm.297364	NM_001195674	ENSMUSG00000061356	Nuggc	Gm600|SLIP-GC	nuclear GTPase, germinal center associated	protein-coding
chipseq_peak_13306	chr9	10659467	10659815	+	0	NA	intron (NM_001170787, intron 1 of 24)	intron (NM_001170787, intron 1 of 24)	245085	NM_001033359	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding
chipseq_peak_4035	chr13	109487455	109487910	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	162938	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_12141	chr7	55650080	55650479	+	0	NA	Intergenic	Intergenic	-117905	NM_001310740	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding
chipseq_peak_1459	chr10	37298564	37300599	+	0	NA	Intergenic	Intergenic	-160655	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
chipseq_peak_3255	chr12	89668778	89669281	+	0	NA	intron (NM_172544, intron 14 of 19)	intron (NM_172544, intron 14 of 19)	-143454	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
chipseq_peak_5242	chr15	66271143	66271503	+	0	NA	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	14901	NM_152923	110862	Mm.255585	NM_152923		Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding
chipseq_peak_1561	chr10	52778097	52778583	+	0	NA	intron (NM_178675, intron 1 of 7)	intron (NM_178675, intron 1 of 7)	87839	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
chipseq_peak_1331	chr10	20658775	20659276	+	0	NA	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	66043	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding
chipseq_peak_9091	chr3	113930902	113931871	+	0	NA	Intergenic	Intergenic	-99154	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding
chipseq_peak_69	chr1	18698161	18698780	+	0	NA	Intergenic	Intergenic	-404552	NM_153154	226896	Mm.244858	NM_153154	ENSMUSG00000042596	Tfap2d	Tcfap2d	transcription factor AP-2, delta	protein-coding
chipseq_peak_13778	chr9	95784933	95786004	+	0	NA	intron (NM_001033210, intron 4 of 15)	intron (NM_001033210, intron 4 of 15)	-35110	NM_011643	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding
chipseq_peak_1465	chr10	37907700	37908091	+	0	NA	Intergenic	Intergenic	-267879	NR_131035	75877	Mm.402094	NR_131035		4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA
chipseq_peak_5602	chr16	33882519	33883239	+	0	NA	intron (NM_001145884, intron 4 of 14)	intron (NM_001145884, intron 4 of 14)	53214	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding
chipseq_peak_12472	chr7	117285274	117285756	+	0	NA	Intergenic	PB1D10|SINE|Alu	-95464	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_254	chr1	41035134	41037421	+	0	NA	Intergenic	T-rich|Low_complexity|Low_complexity	144975	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_7539	chr2	34106368	34108205	+	0	NA	intron (NR_130173, intron 1 of 3)	intron (NR_130173, intron 1 of 3)	449	NR_130173	329387	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA
chipseq_peak_4195	chr14	21789715	21790279	+	0	NA	intron (NM_026283, intron 4 of 5)	intron (NM_026283, intron 4 of 5)	39466	NM_026283	67630	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding
chipseq_peak_4025	chr13	108808975	108809708	+	0	NA	intron (NM_011056, intron 1 of 16)	intron (NM_011056, intron 1 of 16)	155164	NM_011056	238871	Mm.434429	NM_011056		Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding
chipseq_peak_12305	chr7	89923524	89923920	+	0	NA	intron (NM_001291289, intron 1 of 3)	intron (NM_001291289, intron 1 of 3)	17482	NM_001291288	67669	Mm.28679	NM_026304		l7Rn6	0610007P06Rik|1110002N09Rik|Hikeshi|l(7)6Rn	lethal, Chr 7, Rinchik 6	protein-coding
chipseq_peak_3278	chr12	93810717	93811109	+	0	NA	Intergenic	Intergenic	-116425	NR_106201	102466888		NR_106201	ENSMUSG00000098498	Mir8099-2	Gm27692|mmu-mir-8099-2	microRNA 8099-2	ncRNA
chipseq_peak_11228	chr6	17105784	17106232	+	0	NA	TTS (NM_207176)	TTS (NM_207176)	40859	NM_207176	21753	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding
chipseq_peak_11750	chr6	101940304	101940794	+	0	NA	Intergenic	Intergenic	166300	NR_027989	207157	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157|ENSMUSG00000052236	predicted gene 9871	ncRNA
chipseq_peak_6866	chr18	55287679	55288162	+	0	NA	Intergenic	MER121|DNA|TcMar?	-297740	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_11668	chr6	94269809	94270246	+	0	NA	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	13890	NM_001286784	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
chipseq_peak_3331	chr12	104629499	104629777	+	0	NA	Intergenic	Lx5b|LINE|L1	122314	NM_148948	192119	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding
chipseq_peak_3285	chr12	94670049	94670407	+	0	NA	Intergenic	Intergenic	742890	NR_106175	102465890		NR_106175	ENSMUSG00000098931	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA
chipseq_peak_7604	chr2	43815621	43817961	+	0	NA	intron (NM_001301832, intron 2 of 14)	intron (NM_001301832, intron 2 of 14)	67967	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_10509	chr5	54435078	54435472	+	0	NA	Intergenic	Intergenic	85283	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
chipseq_peak_1618	chr10	63838943	63839837	+	0	NA	intron (NM_001164519, intron 1 of 12)	intron (NM_001164519, intron 1 of 12)	18335	NM_001164519	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding
chipseq_peak_11292	chr6	24415538	24416430	+	0	NA	Intergenic	Intergenic	99083	NM_172535	214704	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding
chipseq_peak_9733	chr4	36646147	36647623	+	0	NA	intron (NM_001166000, intron 1 of 8)	intron (NM_001166000, intron 1 of 8)	-1432	NR_030545	100124458		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA
chipseq_peak_11109	chr5	147146963	147147455	+	0	NA	Intergenic	RLTR19-int|LTR|ERVK	-41487	NM_008178	14842	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding
chipseq_peak_11532	chr6	55901777	55902992	+	0	NA	intron (NM_001081665, intron 9 of 13)	intron (NM_001081665, intron 9 of 13)	65366	NM_001081665	232016	Mm.333084	NM_001081665	ENSMUSG00000037973	Ccdc129	D530004J12Rik|Gm458	coiled-coil domain containing 129	protein-coding
chipseq_peak_423	chr1	58621926	58622992	+	0	NA	Intergenic	Intergenic	-30182	NR_045007	100504501	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo
chipseq_peak_7294	chr19	51059544	51060673	+	0	NA	Intergenic	Intergenic	-381462	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_1243	chr10	8760348	8760900	+	0	NA	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	125446	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding
chipseq_peak_3426	chr13	11757266	11758346	+	0	NA	intron (NM_023868, intron 29 of 104)	B4A|SINE|B4	235754	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo
chipseq_peak_11724	chr6	99364448	99364908	+	0	NA	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	70667	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
chipseq_peak_7292	chr19	50596880	50597359	+	0	NA	intron (NM_001252501, intron 1 of 25)	intron (NM_001252501, intron 1 of 25)	81527	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_5499	chr16	9735425	9736202	+	0	NA	intron (NM_008170, intron 2 of 11)	intron (NM_008170, intron 2 of 11)	256720	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding
chipseq_peak_6262	chr17	45490379	45491235	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-15869	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding
chipseq_peak_13563	chr9	52303033	52304168	+	0	NA	Intergenic	Intergenic	-135489	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding
chipseq_peak_2131	chr11	10562880	10563872	+	0	NA	Intergenic	Intergenic	-550640	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding
chipseq_peak_6837	chr18	53961315	53962717	+	0	NA	Intergenic	Intergenic	99903	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
chipseq_peak_13638	chr9	62122888	62123227	+	0	NA	promoter-TSS (NR_039595)	promoter-TSS (NR_039595)	-463	NR_039595	100628602		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA
chipseq_peak_11858	chr6	112926129	112926418	+	0	NA	intron (NM_080448, intron 1 of 21)	intron (NM_080448, intron 1 of 21)	20993	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding
chipseq_peak_7229	chr19	35442421	35442889	+	0	NA	Intergenic	Intergenic	520297	NM_183046	240641	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|B130024C23|C330014J10Rik|Mphosph1|magoo	kinesin family member 20B	protein-coding
chipseq_peak_7752	chr2	57646547	57646893	+	0	NA	Intergenic	L1ME1|LINE|L1	-351435	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
chipseq_peak_8597	chr3	35281002	35281479	+	0	NA	Intergenic	Intergenic	-358589	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA
chipseq_peak_1697	chr10	71422279	71423019	+	0	NA	Intergenic	Intergenic	74856	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding
chipseq_peak_1945	chr10	107813656	107814578	+	0	NA	intron (NM_001177567, intron 29 of 57)	intron (NM_001177567, intron 29 of 57)	-94090	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding
chipseq_peak_2282	chr11	39289185	39289699	+	0	NA	Intergenic	Intergenic	100783	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_7265	chr19	45916059	45917062	+	0	NA	intron (NM_198296, intron 20 of 25)	intron (NM_198296, intron 20 of 25)	81928	NM_198296	71617	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding
chipseq_peak_9796	chr4	52007277	52007539	+	0	NA	intron (NR_040668, intron 2 of 2)	intron (NR_040668, intron 2 of 2)	43702	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA
chipseq_peak_5810	chr16	59693127	59693660	+	0	NA	intron (NM_007938, intron 14 of 17)	intron (NM_007938, intron 14 of 17)	-54054	NM_019665	56297	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding
chipseq_peak_7254	chr19	43444708	43445368	+	0	NA	intron (NM_031396, intron 1 of 10)	intron (NM_031396, intron 1 of 10)	4602	NM_031396	83674	Mm.329864	NM_031396	ENSMUSG00000025189	Cnnm1	AI846314|Acdp1|CLP-1	cyclin M1	protein-coding
chipseq_peak_5399	chr15	92983817	92984302	+	0	NA	Intergenic	Intergenic	291025	NM_001033275	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding
chipseq_peak_251	chr1	40967810	40968316	+	0	NA	Intergenic	Intergenic	162462	NM_001081198	381339	Mm.334678	NM_001081198		Tmem182	2310079P10Rik|AI414494	transmembrane protein 182	protein-coding
chipseq_peak_396	chr1	56664115	56665336	+	0	NA	Intergenic	Intergenic	-27274	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_4305	chr14	54560926	54561258	+	0	NA	Intergenic	Intergenic	-6731	NM_145462	219072	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding
chipseq_peak_2825	chr12	34334393	34334889	+	0	NA	intron (NM_001271386, intron 14 of 27)	intron (NM_001271386, intron 14 of 27)	194248	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
chipseq_peak_278	chr1	41909714	41910497	+	0	NA	Intergenic	Intergenic	-728853	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_10630	chr5	70472667	70473038	+	0	NA	Intergenic	Intergenic	369765	NM_010252	14405	Mm.255292	NM_010252	ENSMUSG00000001260	Gabrg1	GabaA|GabaA/BZ	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	protein-coding
chipseq_peak_1436	chr10	32250249	32251155	+	0	NA	intron (NM_001013411, intron 3 of 6)	RLTR51A_Mm|LTR|ERVK?	639213	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
chipseq_peak_12072	chr7	40699644	40699953	+	0	NA	Intergenic	Intergenic	25061	NR_045504	71029	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA
chipseq_peak_9266	chr3	137529677	137530993	+	0	NA	Intergenic	Intergenic	22287	NM_177665	229862	Mm.246591	NM_177665	ENSMUSG00000055138	Gm4861	9230109N16|EG229862	predicted gene 4861	protein-coding
chipseq_peak_8001	chr2	96757677	96758179	+	0	NA	intron (NM_001289742, intron 2 of 7)	L1MC5a|LINE|L1	439759	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_880	chr1	142653069	142654077	+	0	NA	Intergenic	Intergenic	-987124	NM_020025	26878	Mm.285580	NM_020025		B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding
chipseq_peak_3792	chr13	83304163	83305484	+	0	NA	Intergenic	Intergenic	-199211	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_10967	chr5	122063286	122063900	+	0	NA	Intergenic	Intergenic	-13742	NM_001312908	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding
chipseq_peak_4789	chr15	10654676	10656392	+	0	NA	intron (NM_001166408, intron 2 of 17)	intron (NM_001166408, intron 2 of 17)	55241	NR_033541	100038608	Mm.450744	NR_033541		Gm10389	ENSMUSG00000072658	predicted gene 10389	ncRNA
chipseq_peak_8459	chr3	12326057	12326438	+	0	NA	Intergenic	RMER16-int|LTR|ERVK	-481888	NR_040751	100038545	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	ENSMUSG00000074696	predicted gene 10745	ncRNA
chipseq_peak_2241	chr11	33772577	33772972	+	0	NA	intron (NM_001190885, intron 1 of 8)	intron (NM_001190885, intron 1 of 8)	70811	NM_001290690	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding
chipseq_peak_4373	chr14	66377141	66379159	+	0	NA	Intergenic	Intergenic	33854	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding
chipseq_peak_5882	chr16	67191228	67191694	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	429447	NM_001145977	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_2275	chr11	38764283	38764916	+	0	NA	Intergenic	Intergenic	-244554	NR_040295	100502917	Mm.61144	NR_040295		Gm12130	OTTMUSG00000005424	predicted gene 12130	ncRNA
chipseq_peak_5245	chr15	66353934	66354250	+	0	NA	Intergenic	Intergenic	-67868	NM_152923	110862	Mm.255585	NM_152923		Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding
chipseq_peak_4094	chr13	114872815	114873104	+	0	NA	intron (NM_008396, intron 10 of 29)	(TTAA)n|Simple_repeat|Simple_repeat	54722	NM_001113375	17434	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding
chipseq_peak_5098	chr15	49895958	49896731	+	0	NA	Intergenic	Intergenic	992705	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_1473	chr10	39018966	39019445	+	0	NA	intron (NM_010681, intron 4 of 37)	L1MA4|LINE|L1	53690	NM_010681	16775	Mm.258065	NM_010681	ENSMUSG00000019846	Lama4	-	laminin, alpha 4	protein-coding
chipseq_peak_6941	chr18	66955062	66955997	+	0	NA	Intergenic	Intergenic	-5568	NR_040461	100503582	Mm.329508	NR_040461		Gm19784	-	predicted gene, 19784	ncRNA
chipseq_peak_10309	chr5	15936196	15939133	+	0	NA	intron (NM_009784, intron 1 of 37)	intron (NM_009784, intron 1 of 37)	2973	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_6969	chr18	68816691	68817186	+	0	NA	Intergenic	Intergenic	77538	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA
chipseq_peak_12674	chr8	17621044	17621514	+	0	NA	Intergenic	Intergenic	-85894	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
chipseq_peak_9606	chr4	23829645	23833262	+	0	NA	Intergenic	Intergenic	-665009	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_1737	chr10	83542127	83543841	+	0	NA	promoter-TSS (NM_001033375)	promoter-TSS (NM_001033375)	-957	NM_001033375	319277	Mm.491194	NM_001033375	ENSMUSG00000034560	A230046K03Rik	AA589518|Kiaa1033|mKIAA1033	RIKEN cDNA A230046K03 gene	protein-coding
chipseq_peak_4168	chr14	17641937	17642260	+	0	NA	Intergenic	Intergenic	-18862	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding
chipseq_peak_10406	chr5	39052730	39053328	+	0	NA	Intergenic	Intergenic	-176336	NM_013748	27278	Mm.440845	NM_013748	ENSMUSG00000039315	Clnk	MIST	cytokine-dependent hematopoietic cell linker	protein-coding
chipseq_peak_7722	chr2	54347722	54348403	+	0	NA	Intergenic	Intergenic	-88325	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
chipseq_peak_6285	chr17	50650448	50651916	+	0	NA	intron (NM_013880, intron 4 of 5)	intron (NM_013880, intron 4 of 5)	-47499	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding
chipseq_peak_3231	chr12	82687048	82687307	+	0	NA	intron (NM_001310478, intron 2 of 17)	MLT1F|LTR|ERVL-MaLR	69678	NM_001282061	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding
chipseq_peak_5420	chr15	95028611	95029330	+	0	NA	intron (NM_178789, intron 6 of 7)	intron (NM_178789, intron 6 of 7)	120348	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_5121	chr15	51899076	51899368	+	0	NA	Intergenic	Intergenic	21781	NM_030132	78581	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23, small subunit (SSU) processome component, homolog (yeast)	protein-coding
chipseq_peak_3631	chr13	52361238	52362053	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	169191	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding
chipseq_peak_7369	chr2	5249930	5250335	+	0	NA	Intergenic	Intergenic	112356	NM_028804	74186	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding
chipseq_peak_627	chr1	96201017	96201819	+	0	NA	Intergenic	Intergenic	-179660	NR_040467	73454	Mm.396229	NR_040467	ENSMUSG00000100062	1700063A18Rik	-	RIKEN cDNA 1700063A18 gene	ncRNA
chipseq_peak_10903	chr5	111677903	111678163	+	0	NA	Intergenic	Intergenic	83695	NR_045833	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA
chipseq_peak_7940	chr2	79362152	79362454	+	0	NA	intron (NM_001048176, intron 3 of 12)	intron (NM_001048176, intron 3 of 12)	66685	NM_001048176	228094	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding
chipseq_peak_7727	chr2	55450839	55451176	+	0	NA	intron (NM_008426, intron 3 of 3)	intron (NM_008426, intron 3 of 3)	15037	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
chipseq_peak_12550	chr7	133479207	133479936	+	0	NA	Intergenic	Intergenic	122544	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding
chipseq_peak_12957	chr8	65588482	65588969	+	0	NA	Intergenic	Intergenic	-29315	NM_001293784	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
chipseq_peak_13904	chr9	112747746	112748382	+	0	NA	Intergenic	Intergenic	491490	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_4239	chr14	33464578	33464888	+	0	NA	Intergenic	MER45R|DNA|hAT-Tip100	-17575	NM_001310453	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding
chipseq_peak_3228	chr12	82663572	82664952	+	0	NA	intron (NM_001310478, intron 2 of 17)	intron (NM_001310478, intron 2 of 17)	46763	NM_001282061	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding
chipseq_peak_10962	chr5	121239820	121240290	+	0	NA	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	19836	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding
chipseq_peak_6893	chr18	58104928	58105349	+	0	NA	exon (NM_010181, exon 13 of 65)	exon (NM_010181, exon 13 of 65)	104788	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding
chipseq_peak_8088	chr2	112591084	112591731	+	0	NA	intron (NM_001165935, intron 1 of 4)	L1MC|LINE|L1	31725	NM_001165935	74268	Mm.315125	NM_028844		Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding
chipseq_peak_12939	chr8	61703502	61703896	+	0	NA	intron (NM_001081390, intron 6 of 19)	intron (NM_001081390, intron 6 of 19)	56399	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding
chipseq_peak_10054	chr4	95007907	95008535	+	0	NA	Intergenic	Intergenic	-29121	NM_177239	320713	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding
chipseq_peak_91	chr1	21865695	21867112	+	0	NA	intron (NM_001310477, intron 1 of 12)	intron (NM_001310477, intron 1 of 12)	95539	NM_023872	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding
chipseq_peak_4055	chr13	110211315	110211943	+	0	NA	intron (NM_023852, intron 2 of 4)	intron (NM_023852, intron 2 of 4)	68577	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding
chipseq_peak_10261	chr5	7342904	7343588	+	0	NA	intron (NM_001163223, intron 1 of 3)	intron (NM_001163223, intron 1 of 3)	1132	NM_001163223	207618	Mm.478808	NM_001163223	ENSMUSG00000092094	Zfp804b	Gm441	zinc finger protein 804B	protein-coding
chipseq_peak_6478	chr17	83771600	83772956	+	0	NA	intron (NM_001171052, intron 8 of 15)	intron (NM_001171052, intron 8 of 15)	66115	NM_054082	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding
chipseq_peak_4031	chr13	109303555	109304012	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-20961	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_4653	chr14	110271277	110271572	+	0	NA	Intergenic	Intergenic	483725	NM_175499	239250	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding
chipseq_peak_11347	chr6	33496393	33496889	+	0	NA	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	247491	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
chipseq_peak_5889	chr16	67610314	67611435	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	10034	NM_001145977	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_5063	chr15	44762395	44762998	+	0	NA	intron (NM_176998, intron 1 of 7)	intron (NM_176998, intron 1 of 7)	-10238	NM_178765	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_6449	chr17	78916484	78917083	+	0	NA	intron (NM_001177403, intron 1 of 4)	intron (NM_001177403, intron 1 of 4)	284	NM_001177403	68554	Mm.391820	NM_001177402		Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding
chipseq_peak_6608	chr18	18691618	18692467	+	0	NA	Intergenic	Intergenic	-1111052	NR_045374	75162	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA
chipseq_peak_12663	chr8	16482247	16482559	+	0	NA	intron (NM_053171, intron 6 of 69)	intron (NM_053171, intron 6 of 69)	-313565	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_12990	chr8	70527279	70527651	+	0	NA	promoter-TSS (NM_010223)	promoter-TSS (NM_010223)	-278	NM_001111066	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding
chipseq_peak_11337	chr6	32955230	32956805	+	0	NA	intron (NM_025336, intron 4 of 7)	intron (NM_025336, intron 4 of 7)	104135	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
chipseq_peak_1383	chr10	27234317	27235320	+	0	NA	intron (NM_008481, intron 16 of 63)	intron (NM_008481, intron 16 of 63)	-155048	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_9276	chr3	138852423	138854857	+	0	NA	intron (NR_121195, intron 1 of 7)	intron (NR_121195, intron 1 of 7)	111432	NR_121195	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding
chipseq_peak_13164	chr8	106710059	106710511	+	0	NA	intron (NM_173037, intron 7 of 17)	intron (NM_173037, intron 7 of 17)	27217	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding
chipseq_peak_13083	chr8	92160763	92161812	+	0	NA	Intergenic	Intergenic	194833	NR_033641	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA
chipseq_peak_7336	chr19	58829694	58831078	+	0	NA	intron (NM_175199, intron 1 of 11)	L1MB4|LINE|L1	30598	NM_175199	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|mKIAA0417	heat shock protein 12A	protein-coding
chipseq_peak_6616	chr18	19563468	19564184	+	0	NA	Intergenic	Intergenic	438271	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_7513	chr2	27572701	27573360	+	0	NA	Intergenic	Intergenic	57883	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding
chipseq_peak_903	chr1	146546632	146547346	+	0	NA	intron (NM_001145807, intron 2 of 7)	intron (NM_001145807, intron 2 of 7)	49302	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_14050	chrX	90639790	90640151	+	0	NA	Intergenic	Intergenic	-252172	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding
chipseq_peak_5627	chr16	39246295	39246718	+	0	NA	Intergenic	Intergenic	344161	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_6912	chr18	64506606	64506951	+	0	NA	intron (NM_001142950, intron 8 of 14)	intron (NM_001142950, intron 8 of 14)	9779	NM_027350	70223	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding
chipseq_peak_36	chr1	11413733	11414368	+	0	NA	promoter-TSS (NM_001160371)	promoter-TSS (NM_001160371)	-55	NM_177173	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding
chipseq_peak_307	chr1	47277730	47278991	+	0	NA	Intergenic	Intergenic	188765	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_8428	chr3	4756835	4757563	+	0	NA	Intergenic	Intergenic	-41509	NR_045272	100503859	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA
chipseq_peak_11386	chr6	37026664	37027158	+	0	NA	intron (NM_001081206, intron 15 of 33)	intron (NM_001081206, intron 15 of 33)	-215550	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
chipseq_peak_9329	chr3	144718403	144719446	+	0	NA	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1411	NM_001282037	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding
chipseq_peak_9802	chr4	52849271	52850107	+	0	NA	Intergenic	Intergenic	6822	NM_146824	258821	Mm.297704	NM_146824	ENSMUSG00000049648	Olfr273	MOR262-8	olfactory receptor 273	protein-coding
chipseq_peak_6128	chr16	96472878	96473263	+	0	NA	intron (NM_008791, intron 1 of 2)	intron (NM_008791, intron 1 of 2)	5464	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding
chipseq_peak_4778	chr15	8658788	8659170	+	0	NA	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	51828	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
chipseq_peak_9536	chr4	14435307	14435793	+	0	NA	Intergenic	Intergenic	-144241	NR_131155	100040030	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA
chipseq_peak_1009	chr1	164799235	164799660	+	0	NA	intron (NM_019759, intron 1 of 3)	intron (NM_019759, intron 1 of 3)	2715	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding
chipseq_peak_12732	chr8	35120970	35121446	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-155518	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding
chipseq_peak_6497	chr17	88317910	88318432	+	0	NA	Intergenic	ID_B1|SINE|B4	-122541	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding
chipseq_peak_2398	chr11	68583268	68584479	+	0	NA	Intergenic	Intergenic	-3164	NM_177779	276920	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding
chipseq_peak_1981	chr10	110452683	110454011	+	0	NA	Intergenic	Intergenic	-147303	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
chipseq_peak_492	chr1	70829270	70830522	+	0	NA	intron (NM_177164, intron 3 of 3)	intron (NM_177164, intron 3 of 3)	104181	NM_001310658	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_11904	chr6	122810563	122811042	+	0	NA	Intergenic	Intergenic	-9382	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding
chipseq_peak_7689	chr2	50014557	50015082	+	0	NA	Intergenic	Intergenic	-51610	NR_033304	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding
chipseq_peak_6346	chr17	62843801	62844145	+	0	NA	intron (NM_207654, intron 1 of 4)	intron (NM_207654, intron 1 of 4)	37344	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_4877	chr15	20550813	20551393	+	0	NA	Intergenic	Intergenic	115647	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_4726	chr14	119357238	119358492	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	219600	NM_015820	50787	Mm.445777	NM_015820		Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
chipseq_peak_7332	chr19	58456834	58457327	+	0	NA	Intergenic	Intergenic	-1682	NM_010279	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding
chipseq_peak_11156	chr6	8791545	8791997	+	0	NA	Intergenic	Intergenic	-13287	NM_010492	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding
chipseq_peak_5398	chr15	92959218	92959778	+	0	NA	Intergenic	Intergenic	315586	NM_001033275	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding
chipseq_peak_4793	chr15	11479137	11479569	+	0	NA	Intergenic	Intergenic	-79695	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding
chipseq_peak_12032	chr7	6359144	6359548	+	0	NA	Intergenic	Intergenic	-3962	NM_001112805	330463	Mm.136456	NM_177888		Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding
chipseq_peak_822	chr1	136664814	136665539	+	0	NA	Intergenic	Intergenic	-18220	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA
chipseq_peak_8455	chr3	10815262	10815603	+	0	NA	Intergenic	Intergenic	-375302	NM_001127191	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding
chipseq_peak_8270	chr2	141934778	141935623	+	0	NA	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	966264	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_7972	chr2	90667471	90668032	+	0	NA	Intergenic	Intergenic	-9464	NM_021512	59015	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding
chipseq_peak_2883	chr12	39957207	39958548	+	0	NA	Intergenic	Intergenic	79499	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
chipseq_peak_14096	chrX	145106850	145107165	+	0	NA	intron (NM_001033795, intron 3 of 6)	intron (NM_001033795, intron 3 of 6)	67663	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA
chipseq_peak_8153	chr2	124405159	124405581	+	0	NA	intron (NM_001290997, intron 4 of 20)	intron (NM_001290997, intron 4 of 20)	-183012	NR_040612	75946	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA
chipseq_peak_12929	chr8	60092363	60092852	+	0	NA	Intergenic	Intergenic	266958	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
chipseq_peak_9597	chr4	22970468	22971544	+	0	NA	Intergenic	Intergenic	480458	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
chipseq_peak_918	chr1	149202184	149202890	+	0	NA	Intergenic	Intergenic	719902	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
chipseq_peak_13743	chr9	87712836	87713331	+	0	NA	intron (NM_023814, intron 6 of 7)	intron (NM_023814, intron 6 of 7)	18177	NM_023814	76365	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding
chipseq_peak_13982	chrX	41533824	41534751	+	0	NA	intron (NR_104053, intron 3 of 16)	intron (NR_104053, intron 3 of 16)	132758	NM_001290451	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding
chipseq_peak_13463	chr9	40433370	40433872	+	0	NA	intron (NM_172768, intron 1 of 19)	intron (NM_172768, intron 1 of 19)	22143	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding
chipseq_peak_406	chr1	57205554	57205993	+	0	NA	intron (NR_037990, intron 5 of 6)	intron (NR_037990, intron 5 of 6)	9223	NR_037990	407809	Mm.134505	NR_037990	ENSMUSG00000101429	BC055402	-	cDNA sequence BC055402	ncRNA
chipseq_peak_2376	chr11	61625099	61625543	+	0	NA	Intergenic	L1MC1|LINE|L1	-28000	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding
chipseq_peak_164	chr1	30750991	30751508	+	0	NA	Intergenic	Intergenic	112007	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
chipseq_peak_5321	chr15	73886899	73887478	+	0	NA	Intergenic	Intergenic	-47517	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding
chipseq_peak_5427	chr15	95389990	95391735	+	0	NA	intron (NM_001289653, intron 10 of 20)	Lx9|LINE|L1	137390	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding
chipseq_peak_5230	chr15	65593077	65593526	+	0	NA	Intergenic	Intergenic	-193740	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
chipseq_peak_14052	chrX	92498118	92499225	+	0	NA	intron (NM_173783, intron 3 of 4)	intron (NM_173783, intron 3 of 4)	8722	NM_001034103	546347	Mm.380183	NM_001034103	ENSMUSG00000071726	Gm5941	EG546347	predicted gene 5941	protein-coding
chipseq_peak_11629	chr6	81065743	81066052	+	0	NA	Intergenic	Intergenic	829766	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA
chipseq_peak_1741	chr10	84641734	84642089	+	0	NA	intron (NM_027423, intron 9 of 27)	intron (NM_027423, intron 9 of 27)	19474	NM_027423	70428	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding
chipseq_peak_1400	chr10	28665280	28665670	+	0	NA	Intergenic	Intergenic	-2885	NM_001305663	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding
chipseq_peak_1787	chr10	91514570	91514999	+	0	NA	Intergenic	Intergenic	-343165	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
chipseq_peak_13064	chr8	88671464	88671914	+	0	NA	intron (NM_145857, intron 6 of 12)	MIR|SINE|MIR	24342	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding
chipseq_peak_12495	chr7	121571291	121571685	+	0	NA	Intergenic	Intergenic	18348	NR_102286	75793	Mm.23397	NR_102286		4933432K03Rik	1700001C18Rik|4930433G11Rik|AI428127	RIKEN cDNA 4933432K03 gene	ncRNA
chipseq_peak_8705	chr3	53192724	53193072	+	0	NA	intron (NM_175386, intron 2 of 3)	intron (NM_175386, intron 2 of 3)	151351	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968	lipoma HMGIC fusion partner	protein-coding
chipseq_peak_3237	chr12	84690670	84691035	+	0	NA	intron (NM_001033334, intron 1 of 3)	L2c|LINE|L2	7955	NM_001033334	627191	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|Tmem90a	synapse differentiation inducing 1 like	protein-coding
chipseq_peak_14030	chrX	69150395	69151383	+	0	NA	Intergenic	(TTTCC)n|Simple_repeat|Simple_repeat	-209442	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding
chipseq_peak_9441	chr3	158970791	158971252	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-105343	NR_040750	624759	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA
chipseq_peak_9830	chr4	57205896	57206301	+	0	NA	intron (NM_011207, intron 20 of 25)	intron (NM_011207, intron 20 of 25)	34027	NR_040669	329851	Mm.392470	NR_040669	ENSMUSG00000085967	Gm12530	D730003B17|OTTMUSG00000007337	predicted gene 12530	ncRNA
chipseq_peak_10955	chr5	118639160	118639502	+	0	NA	intron (NM_172424, intron 2 of 30)	intron (NM_172424, intron 2 of 30)	78612	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding
chipseq_peak_13665	chr9	68799063	68799371	+	0	NA	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	33871	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA
chipseq_peak_1764	chr10	89550852	89552242	+	0	NA	Intergenic	Intergenic	-17925	NM_001163504	20186	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding
chipseq_peak_2569	chr11	108449932	108450360	+	0	NA	intron (NM_029606, intron 5 of 27)	intron (NM_029606, intron 5 of 27)	24880	NM_029606	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding
chipseq_peak_8063	chr2	107701061	107701463	+	0	NA	Intergenic	Intergenic	410673	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_10370	chr5	24122143	24122950	+	0	NA	intron (NM_026448, intron 1 of 10)	MurERV4-int|LTR|ERVK	7422	NR_037304	100499521		NR_037304	ENSMUSG00000092880	Mir3471-1	mmu-mir-3471-1	microRNA 3471-1	ncRNA
chipseq_peak_10816	chr5	97554235	97555143	+	0	NA	non-coding (NR_045981, exon 5 of 8)	non-coding (NR_045981, exon 5 of 8)	-97681	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding
chipseq_peak_668	chr1	103472144	103472740	+	0	NA	Intergenic	Intergenic	-1296377	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_1601	chr10	58383390	58383847	+	0	NA	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-10755	NM_001193303	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding
chipseq_peak_14063	chrX	109969881	109970281	+	0	NA	Intergenic	Intergenic	-402672	NR_033597	634340	Mm.66709	NR_033597	ENSMUSG00000082853	Gm7134	EG634340	kinesin family member 18B pseudogene	pseudo
chipseq_peak_1793	chr10	92091532	92091846	+	0	NA	intron (NR_028262, intron 11 of 12)	intron (NR_028262, intron 11 of 12)	-19504	NR_029812	723955		NR_029812	ENSMUSG00000065524	Mir135a-2	Mirn135a-2|mir-135a-2	microRNA 135a-2	ncRNA
chipseq_peak_13914	chr9	113162356	113164266	+	0	NA	Intergenic	Intergenic	423841	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_9386	chr3	151578206	151578620	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	140531	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_3183	chr12	75611856	75613124	+	0	NA	Intergenic	L1MB2|LINE|L1	-16290	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding
chipseq_peak_10203	chr4	138848948	138849247	+	0	NA	intron (NM_001122954, intron 1 of 5)	intron (NM_001122954, intron 1 of 5)	14372	NM_001122954	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding
chipseq_peak_7586	chr2	43004000	43004932	+	0	NA	Intergenic	Intergenic	-350868	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding
chipseq_peak_8698	chr3	52264170	52264698	+	0	NA	Intergenic	Intergenic	-3903	NM_019739	56458	Mm.29891	NM_019739		Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding
chipseq_peak_1441	chr10	32952345	32952906	+	0	NA	Intergenic	Intergenic	-62710	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
chipseq_peak_204	chr1	33940420	33941078	+	0	NA	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	32524	NM_001276764	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding
chipseq_peak_6458	chr17	81368977	81369311	+	0	NA	Intergenic	Intergenic	-304059	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding
chipseq_peak_11674	chr6	95548769	95549233	+	0	NA	intron (NM_011507, intron 9 of 10)	intron (NM_011507, intron 9 of 10)	169845	NM_011507	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding
chipseq_peak_7180	chr19	27382514	27382786	+	0	NA	Intergenic	Intergenic	47258	NR_131940	52874	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e|Kiaa0020	pumilio RNA-binding family member 3	protein-coding
chipseq_peak_1490	chr10	40711007	40711799	+	0	NA	intron (NM_177793, intron 1 of 4)	intron (NM_177793, intron 1 of 4)	28121	NM_177793	327747	Mm.80407	NM_177793	ENSMUSG00000045555	Mettl24	9030224M15Rik	methyltransferase like 24	protein-coding
chipseq_peak_13435	chr9	33188811	33189749	+	0	NA	Intergenic	Intergenic	-260314	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA
chipseq_peak_10047	chr4	93832184	93832515	+	0	NA	Intergenic	Intergenic	-496838	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding
chipseq_peak_11594	chr6	75470037	75471521	+	0	NA	Intergenic	Intergenic	-1771938	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_4419	chr14	76432211	76432738	+	0	NA	intron (NM_001310646, intron 3 of 4)	intron (NM_001310646, intron 3 of 4)	16653	NM_207652	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding
chipseq_peak_4597	chr14	102475286	102475742	+	0	NA	Intergenic	Charlie26a|DNA|hAT-Charlie	507118	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
chipseq_peak_5113	chr15	51230642	51231004	+	0	NA	TTS (NR_045092)	TTS (NR_045092)	164787	NR_045092	100502643	Mm.131987	NR_045092		Gm19303	-	predicted gene, 19303	ncRNA
chipseq_peak_5564	chr16	26782066	26782595	+	0	NA	Intergenic	Intergenic	-26828	NR_105063	100504628	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA
chipseq_peak_7462	chr2	12474536	12475477	+	0	NA	Intergenic	Intergenic	-55546	NM_024185	66960	Mm.34059	NM_024185	ENSMUSG00000026767	Fam188a	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958	family with sequence similarity 188, member A	protein-coding
chipseq_peak_1949	chr10	108279281	108279720	+	0	NA	Intergenic	Intergenic	-52689	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding
chipseq_peak_13392	chr9	28225689	28226412	+	0	NA	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	434781	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_1382	chr10	27189301	27190250	+	0	NA	intron (NM_008481, intron 23 of 63)	intron (NM_008481, intron 23 of 63)	-200091	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_2867	chr12	38386965	38387902	+	0	NA	intron (NM_178681, intron 20 of 24)	intron (NM_178681, intron 20 of 24)	227088	NR_045943	73867	Mm.78933	NR_045943		4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA
chipseq_peak_8648	chr3	42792293	42793967	+	0	NA	Intergenic	Intergenic	1050512	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
chipseq_peak_6348	chr17	63025238	63025779	+	0	NA	Intergenic	Intergenic	-144191	NM_207654	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_3847	chr13	88424980	88425230	+	0	NA	Intergenic	Intergenic	-396367	NM_010103	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding
chipseq_peak_11021	chr5	131702898	131703192	+	0	NA	intron (NM_177047, intron 5 of 18)	intron (NM_177047, intron 5 of 18)	-177224	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_875	chr1	141966832	141969015	+	0	NA	Intergenic	Intergenic	-1311521	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_2803	chr12	31967672	31968641	+	0	NA	intron (NM_011158, intron 6 of 10)	intron (NM_011158, intron 6 of 10)	-17621	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding
chipseq_peak_11067	chr5	136511297	136511906	+	0	NA	intron (NM_198602, intron 1 of 22)	intron (NM_198602, intron 1 of 22)	54380	NM_001291233	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
chipseq_peak_5456	chr15	102736000	102736465	+	0	NA	Intergenic	Intergenic	10677	NR_104334	102216269		NR_104334		Gm38436	Cistr|Cistr-act	predicted gene, 38436	ncRNA
chipseq_peak_10148	chr4	120045142	120045575	+	0	NA	intron (NM_010657, intron 2 of 8)	Plat_L3|LINE|CR1	-116066	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	VIC	endothelin 2	protein-coding
chipseq_peak_1422	chr10	30810659	30811591	+	0	NA	Intergenic	Intergenic	-8018	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding
chipseq_peak_5742	chr16	50009421	50009971	+	0	NA	Intergenic	Intergenic	29236	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA
chipseq_peak_2635	chr12	5242331	5242707	+	0	NA	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	133163	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding
chipseq_peak_10950	chr5	118199563	118199949	+	0	NA	intron (NM_001109902, intron 10 of 10)	intron (NM_001109902, intron 10 of 10)	29992	NM_007545	12123	Mm.384468	NM_007545	ENSMUSG00000046607	Hrk	AI838259|Bid3|DP5|harakiri	harakiri, BCL2 interacting protein (contains only BH3 domain)	protein-coding
chipseq_peak_6738	chr18	33809733	33810151	+	0	NA	intron (NM_013512, intron 19 of 23)	intron (NM_013512, intron 19 of 23)	15050	NR_038152	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA
chipseq_peak_10270	chr5	10169780	10170885	+	0	NA	Intergenic	Intergenic	-444980	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding
chipseq_peak_14145	chrX	167433869	167434375	+	0	NA	Intergenic	Intergenic	-51373	NM_026662	110639	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding
chipseq_peak_9469	chr4	7190617	7192356	+	0	NA	Intergenic	Intergenic	-200763	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
chipseq_peak_2451	chr11	81283221	81283627	+	0	NA	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	-130521	NM_007384	11418	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding
chipseq_peak_8620	chr3	39719040	39719453	+	0	NA	Intergenic	Intergenic	803666	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_10907	chr5	111754689	111755244	+	0	NA	intron (NR_045833, intron 1 of 4)	intron (NR_045833, intron 1 of 4)	6762	NR_045833	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA
chipseq_peak_1628	chr10	64424085	64425102	+	0	NA	intron (NM_001164376, intron 10 of 17)	intron (NM_001164376, intron 10 of 17)	-334338	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_8488	chr3	18374118	18374513	+	0	NA	Intergenic	Intergenic	106162	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
chipseq_peak_1835	chr10	97404070	97404650	+	0	NA	Intergenic	Intergenic	-19118	NR_039547	100628616		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA
chipseq_peak_9255	chr3	134935512	134936104	+	0	NA	Intergenic	Intergenic	106801	NM_021382	21338	Mm.103810	NM_021382	ENSMUSG00000028172	Tacr3	Nk3r|Nkr|Tac3r	tachykinin receptor 3	protein-coding
chipseq_peak_1828	chr10	96911640	96912098	+	0	NA	Intergenic	Intergenic	-123899	NR_045358	75301	Mm.108650	NR_045358		4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA
chipseq_peak_6653	chr18	23394745	23395182	+	0	NA	intron (NM_001285813, intron 1 of 21)	intron (NM_001285813, intron 1 of 21)	-20446	NM_207650	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding
chipseq_peak_3981	chr13	103914941	103915312	+	0	NA	intron (NM_001289473, intron 1 of 25)	Charlie1a|DNA|hAT-Charlie	5460	NM_001289474	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbb2ip	1700028E05Rik|Erbin|mKIAA1225	Erbb2 interacting protein	protein-coding
chipseq_peak_9551	chr4	16069366	16069814	+	0	NA	Intergenic	Intergenic	-55713	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding
chipseq_peak_11955	chr6	139391315	139391665	+	0	NA	Intergenic	Intergenic	-68914	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA
chipseq_peak_313	chr1	47961791	47963106	+	0	NA	Intergenic	Intergenic	-495323	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_7982	chr2	93957738	93958010	+	0	NA	promoter-TSS (NM_001145034)	promoter-TSS (NM_001145034)	-774	NM_001145034	620695	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2|OTTMUSG00000014994	predicted gene 13889	protein-coding
chipseq_peak_2601	chr11	111662099	111662758	+	0	NA	Intergenic	Intergenic	596264	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
chipseq_peak_8828	chr3	67891638	67893121	+	0	NA	intron (NM_001113419, intron 1 of 10)	intron (NM_001113419, intron 1 of 10)	159	NM_001113419	100505386	Mm.331064	NM_001113419	ENSMUSG00000102422	Gm21949	Iqcj-schip1|Schip-1-iqcj|Schip1	predicted gene, 21949	protein-coding
chipseq_peak_3437	chr13	16125606	16126754	+	0	NA	Intergenic	Intergenic	111705	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_4040	chr13	109576807	109577076	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	252197	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_14126	chrX	161537434	161538729	+	0	NA	Intergenic	Intergenic	-178955	NM_001103367	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding
chipseq_peak_11946	chr6	138503809	138504393	+	0	NA	intron (NM_207222, intron 1 of 4)	intron (NM_207222, intron 1 of 4)	60128	NR_126082	102632192	Mm.417247	NR_126082	ENSMUSG00000107675	Gm30332	-	predicted gene, 30332	ncRNA
chipseq_peak_8857	chr3	70223037	70224081	+	0	NA	Intergenic	Intergenic	215946	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1 homolog (zebrafish)	protein-coding
chipseq_peak_12442	chr7	112162675	112163298	+	0	NA	Intergenic	Intergenic	-3929	NM_015814	50781	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148	dickkopf homolog 3 (Xenopus laevis)	protein-coding
chipseq_peak_11765	chr6	103507872	103508570	+	0	NA	Intergenic	Intergenic	-2655	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_339	chr1	53018693	53019266	+	0	NA	Intergenic	Intergenic	-42661	NM_010834	17700	Mm.3514	NM_010834	ENSMUSG00000026100	Mstn	Cmpt|Gdf8	myostatin	protein-coding
chipseq_peak_11075	chr5	140371200	140372093	+	0	NA	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	17601	NM_172277	231834	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding
chipseq_peak_8607	chr3	37963852	37966025	+	0	NA	intron (NR_040559, intron 2 of 3)	intron (NR_040559, intron 2 of 3)	66125	NR_040559	626410	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA
chipseq_peak_5840	chr16	63653479	63653998	+	0	NA	intron (NM_010140, intron 3 of 16)	intron (NM_010140, intron 3 of 16)	210419	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_11828	chr6	108592262	108593151	+	0	NA	intron (NR_104577, intron 3 of 6)	intron (NR_104577, intron 3 of 6)	30461	NR_040757	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA
chipseq_peak_3509	chr13	29357000	29357983	+	0	NA	intron (NR_131896, intron 14 of 16)	intron (NR_131896, intron 14 of 16)	341236	NR_045073	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
chipseq_peak_9638	chr4	26223202	26223565	+	0	NA	Intergenic	Intergenic	123269	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding
chipseq_peak_8261	chr2	141460184	141460563	+	0	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-788897	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_7210	chr19	30613344	30613867	+	0	NA	intron (NM_011160, intron 10 of 17)	intron (NM_011160, intron 10 of 17)	-64109	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf homolog 1 (Xenopus laevis)	protein-coding
chipseq_peak_10118	chr4	105149454	105149798	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-7721	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding
chipseq_peak_3822	chr13	84349475	84350226	+	0	NA	Intergenic	Intergenic	127554	NR_029419	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
chipseq_peak_5151	chr15	55417968	55418492	+	0	NA	intron (NM_181277, intron 19 of 47)	intron (NM_181277, intron 19 of 47)	110480	NM_181277	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding
chipseq_peak_10352	chr5	21500734	21501253	+	0	NA	intron (NM_177076, intron 16 of 19)	intron (NM_177076, intron 16 of 19)	-42534	NM_028977	74511	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding
chipseq_peak_6666	chr18	23921588	23922125	+	0	NA	Intergenic	Intergenic	-32832	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding
chipseq_peak_4866	chr15	19667206	19668616	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	847582	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_1568	chr10	52940103	52941390	+	0	NA	intron (NM_178675, intron 2 of 7)	intron (NM_178675, intron 2 of 7)	250245	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
chipseq_peak_2891	chr12	41483016	41484215	+	0	NA	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	2442	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_7252	chr19	43428238	43428865	+	0	NA	Intergenic	PB1D10|SINE|Alu	-11885	NM_031396	83674	Mm.329864	NM_031396	ENSMUSG00000025189	Cnnm1	AI846314|Acdp1|CLP-1	cyclin M1	protein-coding
chipseq_peak_9695	chr4	32188698	32189774	+	0	NA	Intergenic	Intergenic	225129	NM_009316	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_2689	chr12	12225470	12226295	+	0	NA	Intergenic	Intergenic	-36257	NM_029758	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding
chipseq_peak_5167	chr15	58073492	58073821	+	0	NA	intron (NM_009572, intron 1 of 3)	intron (NM_009572, intron 1 of 3)	2852	NM_001042438	22770	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding
chipseq_peak_6007	chr16	75501816	75502367	+	0	NA	Intergenic	Intergenic	83970	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
chipseq_peak_10837	chr5	100108535	100109440	+	0	NA	intron (NM_182841, intron 1 of 7)	intron (NM_182841, intron 1 of 7)	31025	NR_045993	76003	Mm.447060	NR_045993	ENSMUSG00000086259	Tmem150cos	5830403M04Rik	transmembrane protein 150C, opposite strand	ncRNA
chipseq_peak_9101	chr3	116047081	116047399	+	0	NA	Intergenic	Intergenic	38943	NM_001163514	58193	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding
chipseq_peak_3256	chr12	89722440	89723089	+	0	NA	intron (NM_172544, intron 14 of 19)	intron (NM_172544, intron 14 of 19)	-89719	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
chipseq_peak_3800	chr13	83461643	83462117	+	0	NA	Intergenic	Intergenic	-42154	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_8257	chr2	141074177	141074842	+	0	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-403033	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_13525	chr9	48739812	48740522	+	0	NA	intron (NM_001033324, intron 3 of 6)	intron (NM_001033324, intron 3 of 6)	95778	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding
chipseq_peak_12856	chr8	53695319	53695695	+	0	NA	Intergenic	Intergenic	-56442	NM_146208	234258	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding
chipseq_peak_2911	chr12	44181318	44181890	+	0	NA	Intergenic	Intergenic	28464	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
chipseq_peak_5080	chr15	46259236	46260581	+	0	NA	Intergenic	Intergenic	-64677	NR_045509	71120	Mm.158571	NR_045509	ENSMUSG00000099751	1700022A22Rik	4933413D07Rik	RIKEN cDNA 1700022A22 gene	ncRNA
chipseq_peak_8338	chr2	157315551	157315822	+	0	NA	intron (NM_019642, intron 12 of 16)	intron (NM_019642, intron 12 of 16)	30969	NM_010285	14601	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	Ghrf	growth hormone releasing hormone	protein-coding
chipseq_peak_6635	chr18	21758255	21758814	+	0	NA	Intergenic	Intergenic	-106166	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding
chipseq_peak_12809	chr8	45627395	45627893	+	0	NA	promoter-TSS (NM_001310707)	promoter-TSS (NM_001310707)	-107	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777	sorbin and SH3 domain containing 2	protein-coding
chipseq_peak_11258	chr6	19282755	19283726	+	0	NA	Intergenic	Intergenic	-4397	NR_126084	74725	Mm.387798	NR_126084	ENSMUSG00000107217	4930524B17Rik	-	RIKEN cDNA 4930524B17 gene	ncRNA
chipseq_peak_4173	chr14	17979704	17980013	+	0	NA	intron (NM_001113417, intron 4 of 9)	intron (NM_001113417, intron 4 of 9)	-1786	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding
chipseq_peak_6151	chr17	3602892	3603681	+	0	NA	Intergenic	Intergenic	45462	NR_045303	68230	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA
chipseq_peak_3311	chr12	99155917	99156360	+	0	NA	Intergenic	MTE2b-int|LTR|ERVL-MaLR	6670	NR_038130	67639	Mm.87374	NR_038130		4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA
chipseq_peak_10984	chr5	125931513	125931883	+	0	NA	Intergenic	Intergenic	399280	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding
chipseq_peak_9431	chr3	158287060	158287404	+	0	NA	intron (NM_001081358, intron 8 of 27)	intron (NM_001081358, intron 8 of 27)	250550	NM_001289524	67144	Mm.358704	NM_024194		Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding
chipseq_peak_1991	chr10	111190004	111190601	+	0	NA	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	25500	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding
chipseq_peak_5776	chr16	53385046	53385584	+	0	NA	Intergenic	Intergenic	-569571	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA
chipseq_peak_119	chr1	24759858	24760386	+	0	NA	intron (NM_001310483, intron 14 of 15)	intron (NM_001310483, intron 14 of 15)	81204	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding
chipseq_peak_1679	chr10	69334522	69335283	+	0	NA	Intergenic	Intergenic	18010	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding
chipseq_peak_144	chr1	27657312	27659062	+	0	NA	Intergenic	Intergenic	-970727	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding
chipseq_peak_2172	chr11	21010292	21010918	+	0	NA	Intergenic	Intergenic	-80719	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding
chipseq_peak_12186	chr7	67976659	67977149	+	0	NA	intron (NM_010513, intron 1 of 20)	(TGAG)n|Simple_repeat|Simple_repeat	24647	NM_010513	16001	Mm.275742	NM_010513		Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding
chipseq_peak_7894	chr2	74128939	74129609	+	0	NA	Intergenic	Intergenic	178443	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA
chipseq_peak_6022	chr16	76779901	76780429	+	0	NA	Intergenic	Intergenic	230716	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA
chipseq_peak_5371	chr15	88667651	88669063	+	0	NA	Intergenic	ID_B1|SINE|B4	65862	NM_001033274	223770	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding
chipseq_peak_3767	chr13	82462880	82464250	+	0	NA	Intergenic	Intergenic	234768	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_8025	chr2	101268890	101269426	+	0	NA	Intergenic	RMER12B|LTR|ERVK	-355590	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
chipseq_peak_9036	chr3	101162750	101163537	+	0	NA	Intergenic	Intergenic	-52977	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding
chipseq_peak_7988	chr2	94695186	94696138	+	0	NA	Intergenic	Intergenic	-257476	NM_001305258	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding
chipseq_peak_8356	chr2	161233374	161233669	+	0	NA	Intergenic	Intergenic	-124435	NM_173368	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
chipseq_peak_13946	chr9	120444257	120444980	+	0	NA	intron (NM_144557, intron 11 of 16)	intron (NM_144557, intron 11 of 16)	-47988	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding
chipseq_peak_690	chr1	106240257	106240657	+	0	NA	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	68588	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
chipseq_peak_2335	chr11	46203008	46203429	+	0	NA	intron (NM_133769, intron 28 of 30)	intron (NM_133769, intron 28 of 30)	-28917	NR_105955	102465598		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA
chipseq_peak_13761	chr9	92937186	92938425	+	0	NA	Intergenic	Charlie6|DNA|hAT-Charlie	67928	NR_040756	78349	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA
chipseq_peak_4712	chr14	117225842	117226815	+	0	NA	intron (NM_011821, intron 2 of 8)	L2b|LINE|L2	301031	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_9032	chr3	100731418	100731727	+	0	NA	Intergenic	MIR|SINE|MIR	-46099	NM_010763	17156	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding
chipseq_peak_660	chr1	100024792	100025213	+	0	NA	intron (NM_172851, intron 3 of 23)	intron (NM_172851, intron 3 of 23)	252237	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding
chipseq_peak_8075	chr2	109678217	109678883	+	0	NA	intron (NM_001285419, intron 1 of 1)	intron (NM_001285419, intron 1 of 1)	1518	NM_001285419	12064	Mm.1442	NM_007540	ENSMUSG00000048482	Bdnf	-	brain derived neurotrophic factor	protein-coding
chipseq_peak_3768	chr13	82466098	82467473	+	0	NA	Intergenic	Intergenic	231548	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_409	chr1	57298555	57299075	+	0	NA	Intergenic	Intergenic	78729	NR_037999	75323	Mm.362968	NR_037999	ENSMUSG00000097519	4930558J18Rik	-	RIKEN cDNA 4930558J18 gene	ncRNA
chipseq_peak_13698	chr9	77569093	77569613	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-24501	NM_001146048	214345	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding
chipseq_peak_10010	chr4	87062622	87063160	+	0	NA	intron (NM_172426, intron 4 of 10)	intron (NM_172426, intron 4 of 10)	165072	NM_001110240	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
chipseq_peak_9221	chr3	127258507	127260099	+	0	NA	Intergenic	Intergenic	97998	NR_105030	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA
chipseq_peak_13732	chr9	85225015	85225538	+	0	NA	Intergenic	Intergenic	101848	NM_001160378	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	D930050G01Rik	family with sequence similarity 46, member A	protein-coding
chipseq_peak_3280	chr12	93981116	93981998	+	0	NA	Intergenic	Intergenic	54219	NR_106175	102465890		NR_106175	ENSMUSG00000098931	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA
chipseq_peak_3510	chr13	29365382	29365736	+	0	NA	intron (NR_131896, intron 13 of 16)	intron (NR_131896, intron 13 of 16)	349304	NR_045073	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
chipseq_peak_5758	chr16	52085134	52086086	+	0	NA	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	54061	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
chipseq_peak_4202	chr14	24525968	24526705	+	0	NA	Intergenic	Intergenic	35655	NM_207634	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding
chipseq_peak_3462	chr13	19428249	19428756	+	0	NA	Intergenic	Intergenic	-32689	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding
chipseq_peak_10255	chr5	6042678	6043131	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	-293587	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding
chipseq_peak_11273	chr6	22547202	22547700	+	0	NA	Intergenic	Intergenic	-191370	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding
chipseq_peak_7454	chr2	10986067	10986453	+	0	NA	Intergenic	Tigger10|DNA|TcMar-Tigger	-186122	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding
chipseq_peak_10088	chr4	103549099	103549448	+	0	NA	Intergenic	MER31B|LTR|ERV1	166773	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA
chipseq_peak_10995	chr5	126974592	126975078	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	-55954	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA
chipseq_peak_4573	chr14	96559874	96560699	+	0	NA	Intergenic	Intergenic	-41252	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
chipseq_peak_6076	chr16	84135705	84136212	+	0	NA	Intergenic	Intergenic	-235185	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
chipseq_peak_11434	chr6	43590708	43591862	+	0	NA	intron (NM_001311111, intron 3 of 7)	intron (NM_001311111, intron 3 of 7)	74993	NM_013861	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
chipseq_peak_13437	chr9	33208640	33209786	+	0	NA	Intergenic	Intergenic	-280247	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA
chipseq_peak_284	chr1	42253759	42254749	+	0	NA	Intergenic	Intergenic	440571	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
chipseq_peak_4276	chr14	46148984	46149390	+	0	NA	Intergenic	Intergenic	65160	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo
chipseq_peak_12904	chr8	57457076	57457593	+	0	NA	intron (NM_009136, intron 1 of 2)	intron (NM_009136, intron 1 of 2)	1411	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding
chipseq_peak_9029	chr3	98106448	98107128	+	0	NA	intron (NM_010928, intron 11 of 33)	intron (NM_010928, intron 11 of 33)	-54024	NM_027665	71078	Mm.50711	NM_027665		Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding
chipseq_peak_10795	chr5	90033103	90033549	+	0	NA	Intergenic	Intergenic	-149992	NM_177872	330119	Mm.133062	NM_177872		Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding
chipseq_peak_11471	chr6	49414751	49416175	+	0	NA	intron (NM_029916, intron 6 of 23)	ETnERV2-int|LTR|ERVK	19859	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding
chipseq_peak_12348	chr7	91868740	91869244	+	0	NA	intron (NM_011807, intron 4 of 22)	L1MA7|LINE|L1	-193402	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_11370	chr6	34769469	34770350	+	0	NA	intron (NM_145575, intron 10 of 11)	intron (NM_145575, intron 10 of 11)	-10523	NM_178630	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding
chipseq_peak_12553	chr7	133620722	133621742	+	0	NA	Intergenic	Intergenic	-16443	NM_178115	214764	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding
chipseq_peak_13400	chr9	28499896	28500810	+	0	NA	intron (NM_177906, intron 2 of 7)	intron (NM_177906, intron 2 of 7)	709084	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_8892	chr3	76567246	76567936	+	0	NA	intron (NM_178673, intron 8 of 15)	intron (NM_178673, intron 8 of 15)	492008	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding
chipseq_peak_1336	chr10	21683865	21684562	+	0	NA	Intergenic	Intergenic	-6632	NR_045843	432436	Mm.244553	NM_001004162		Gm5420	EG432436	predicted gene 5420	ncRNA
chipseq_peak_4644	chr14	108664732	108665526	+	0	NA	Intergenic	Intergenic	249110	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_4293	chr14	49460808	49461229	+	0	NA	intron (NM_029238, intron 1 of 7)	RMER15-int|LTR|ERVL	64819	NM_029238	75288	Mm.78738	NM_029238	ENSMUSG00000021852	Slc35f4	4930550L21Rik	solute carrier family 35, member F4	protein-coding
chipseq_peak_10533	chr5	57363469	57365035	+	0	NA	Intergenic	Intergenic	353667	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_1146	chr1	181851494	181851934	+	0	NA	Intergenic	Intergenic	-9313	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding
chipseq_peak_2151	chr11	15385896	15386763	+	0	NA	Intergenic	Intergenic	787089	NM_001164166	432536	Mm.33646	NM_001164166		Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding
chipseq_peak_7339	chr19	59053888	59055383	+	0	NA	intron (NM_175172, intron 2 of 14)	intron (NM_175172, intron 2 of 14)	21434	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding
chipseq_peak_845	chr1	138901669	138902232	+	0	NA	Intergenic	LTR16B1|LTR|ERVL	-45096	NM_001081226	69549	Mm.264673	NM_001081226	ENSMUSG00000079283	2310009B15Rik	-	RIKEN cDNA 2310009B15 gene	protein-coding
chipseq_peak_10749	chr5	84215592	84216232	+	0	NA	intron (NM_007937, intron 3 of 15)	intron (NM_007937, intron 3 of 15)	201470	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_5164	chr15	57892240	57892906	+	0	NA	promoter-TSS (NM_024207)	promoter-TSS (NM_024207)	-155	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding
chipseq_peak_6328	chr17	58468878	58469431	+	0	NA	Intergenic	Intergenic	522221	NM_027001	69239	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding
chipseq_peak_324	chr1	50868730	50868940	+	0	NA	Intergenic	Intergenic	-58688	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding
chipseq_peak_10017	chr4	87667039	87668855	+	0	NA	Intergenic	Intergenic	138376	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	protein-coding
chipseq_peak_9590	chr4	21321881	21322416	+	0	NA	Intergenic	Intergenic	363815	NM_001080771	230025	Mm.208541	NM_001080771	ENSMUSG00000040478	Prdm13	-	PR domain containing 13	protein-coding
chipseq_peak_8372	chr2	164091791	164092168	+	0	NA	intron (NM_021420, intron 5 of 10)	intron (NM_021420, intron 5 of 10)	17801	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding
chipseq_peak_11850	chr6	111347977	111348451	+	0	NA	intron (NM_177328, intron 7 of 9)	intron (NM_177328, intron 7 of 9)	702616	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_12518	chr7	127572873	127573441	+	0	NA	promoter-TSS (NM_026888)	promoter-TSS (NM_026888)	-191	NM_026888	68961	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding
chipseq_peak_6152	chr17	3702188	3702489	+	0	NA	Intergenic	Intergenic	-6077	NM_198958	224480	Mm.328756	NM_198958	ENSMUSG00000023802	Nox3	GP91-3|het|nmf250	NADPH oxidase 3	protein-coding
chipseq_peak_6994	chr18	70828515	70828836	+	0	NA	Intergenic	Intergenic	260383	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding
chipseq_peak_4568	chr14	95912735	95914376	+	0	NA	Intergenic	Intergenic	32289	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding
chipseq_peak_3998	chr13	106823457	106824081	+	0	NA	intron (NM_029665, intron 27 of 29)	L1ME2|LINE|L1	113146	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding
chipseq_peak_10882	chr5	110913726	110914079	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	34099	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding
chipseq_peak_3455	chr13	17297759	17298113	+	0	NA	intron (NM_138654, intron 11 of 13)	intron (NM_138654, intron 11 of 13)	396829	NM_138654	192136	Mm.364180	NM_138654		Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding
chipseq_peak_11060	chr5	136292634	136293530	+	0	NA	intron (NM_009986, intron 20 of 23)	intron (NM_009986, intron 20 of 23)	-48142	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding
chipseq_peak_1751	chr10	86907093	86907779	+	0	NA	intron (NM_138673, intron 31 of 68)	intron (NM_138673, intron 31 of 68)	100506	NM_138673	192188	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding
chipseq_peak_8657	chr3	45968510	45969046	+	0	NA	Intergenic	Intergenic	479163	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding
chipseq_peak_7043	chr18	85798706	85800806	+	0	NA	Intergenic	Intergenic	-595196	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chipseq_peak_7316	chr19	57211587	57212277	+	0	NA	intron (NM_001290813, intron 1 of 20)	intron (NM_001290813, intron 1 of 20)	4100	NM_001290813	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding
chipseq_peak_6326	chr17	58148552	58149084	+	0	NA	intron (NM_001081653, intron 11 of 23)	intron (NM_001081653, intron 11 of 23)	379248	NM_001081653	620292	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding
chipseq_peak_7947	chr2	80594278	80595303	+	0	NA	Intergenic	Intergenic	-13608	NM_016965	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding
chipseq_peak_2588	chr11	110796408	110796702	+	0	NA	Intergenic	Intergenic	-171478	NM_010604	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
chipseq_peak_12913	chr8	58253379	58254170	+	0	NA	intron (NM_175032, intron 4 of 11)	intron (NM_175032, intron 4 of 11)	447022	NM_001177534	100271928	Mm.484123	NM_001177534		Gm15881	OTTMUSG00000027193	predicted gene 15881	protein-coding
chipseq_peak_12960	chr8	65852838	65853712	+	0	NA	intron (NM_175188, intron 1 of 7)	intron (NM_175188, intron 1 of 7)	234750	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
chipseq_peak_12682	chr8	23078133	23078926	+	0	NA	intron (NR_102385, intron 2 of 45)	intron (NR_102385, intron 2 of 45)	20270	NM_001277289	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding
chipseq_peak_4873	chr15	20222017	20223765	+	0	NA	Intergenic	Intergenic	443859	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_5927	chr16	72277282	72278205	+	0	NA	Intergenic	Intergenic	-43416	NR_131115	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA
chipseq_peak_12933	chr8	60865454	60865778	+	0	NA	Intergenic	Intergenic	-24835	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	2700029M09Rik	C230006B22Rik	RIKEN cDNA 2700029M09 gene	protein-coding
chipseq_peak_5514	chr16	13025281	13025700	+	0	NA	Intergenic	Intergenic	-84246	NM_015769	50505	Mm.287837	NM_015769		Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding
chipseq_peak_12783	chr8	42498148	42498649	+	0	NA	Intergenic	Intergenic	643088	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding
chipseq_peak_9685	chr4	31404691	31405442	+	0	NA	Intergenic	Intergenic	-559041	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_5384	chr15	91463874	91464426	+	0	NA	intron (NM_001033633, intron 3 of 9)	B3|SINE|B2	109111	NM_001033633	239606	Mm.360596	NM_001033633	ENSMUSG00000036298	Slc2a13	6530403A04|A630029G22Rik|AI505012|Gm308	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding
chipseq_peak_8829	chr3	67931143	67931466	+	0	NA	intron (NM_001113419, intron 1 of 10)	intron (NM_001113419, intron 1 of 10)	39084	NM_001113419	100505386	Mm.331064	NM_001113419	ENSMUSG00000102422	Gm21949	Iqcj-schip1|Schip-1-iqcj|Schip1	predicted gene, 21949	protein-coding
chipseq_peak_12372	chr7	93836088	93836457	+	0	NA	Intergenic	Intergenic	756393	NM_021427	58238	Mm.113787	NM_021427		Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding
chipseq_peak_10230	chr4	152585526	152585897	+	0	NA	Intergenic	Intergenic	107569	NM_153424	260305	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding
chipseq_peak_5802	chr16	57389890	57390204	+	0	NA	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	36770	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding
chipseq_peak_7531	chr2	32138835	32139160	+	0	NA	Intergenic	MIR|SINE|MIR	-12151	NM_001159634	227723	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding
chipseq_peak_12001	chr6	144961189	144962125	+	0	NA	Intergenic	Intergenic	87155	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding
chipseq_peak_11459	chr6	47050200	47051303	+	0	NA	intron (NM_001004357, intron 18 of 23)	intron (NM_001004357, intron 18 of 23)	-193645	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_4688	chr14	114968526	114969814	+	0	NA	Intergenic	Intergenic	-23222	NR_126551	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA
chipseq_peak_9886	chr4	72328207	72329276	+	0	NA	Intergenic	Intergenic	127497	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA
chipseq_peak_1807	chr10	93939084	93939330	+	0	NA	Intergenic	Intergenic	24656	NR_029764	723908		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA
chipseq_peak_7924	chr2	78447165	78448225	+	0	NA	Intergenic	L1MEc|LINE|L1	210148	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding
chipseq_peak_9858	chr4	67928374	67929083	+	0	NA	Intergenic	Intergenic	1025669	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding
chipseq_peak_10920	chr5	112834016	112835365	+	0	NA	intron (NM_028901, intron 17 of 43)	intron (NM_028901, intron 17 of 43)	41398	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA
chipseq_peak_1407	chr10	29420630	29421478	+	0	NA	Intergenic	Intergenic	-58612	NM_001110198	68031	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding
chipseq_peak_3173	chr12	74781142	74782781	+	0	NA	Intergenic	Intergenic	395371	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding
chipseq_peak_1696	chr10	71150561	71150926	+	0	NA	intron (NM_031397, intron 1 of 20)	intron (NM_031397, intron 1 of 20)	8891	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	bicaudal C homolog 1 (Drosophila)	protein-coding
chipseq_peak_5239	chr15	66093386	66093744	+	0	NA	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-116761	NM_001145096	654498	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding
chipseq_peak_13415	chr9	29892903	29893646	+	0	NA	intron (NM_172290, intron 1 of 7)	intron (NM_172290, intron 1 of 7)	69855	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_9377	chr3	150987121	150987917	+	0	NA	Intergenic	Intergenic	-450363	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_7052	chr18	87911632	87912095	+	0	NA	Intergenic	Intergenic	982344	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
chipseq_peak_966	chr1	159581702	159582229	+	0	NA	intron (NM_022312, intron 1 of 22)	intron (NM_022312, intron 1 of 22)	58196	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding
chipseq_peak_485	chr1	70441888	70443032	+	0	NA	intron (NM_029160, intron 14 of 16)	intron (NM_029160, intron 14 of 16)	-283255	NM_177164	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_5337	chr15	80500479	80501460	+	0	NA	intron (NM_001163189, intron 4 of 5)	intron (NM_001163189, intron 4 of 5)	59501	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding
chipseq_peak_2494	chr11	88545311	88545782	+	0	NA	intron (NM_054043, intron 6 of 13)	intron (NM_054043, intron 6 of 13)	-73705	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA
chipseq_peak_7074	chr19	11964813	11965829	+	0	NA	promoter-TSS (NM_001033174)	promoter-TSS (NM_001033174)	-523	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding
chipseq_peak_11392	chr6	37241484	37242592	+	0	NA	intron (NM_001081206, intron 1 of 33)	intron (NM_001081206, intron 1 of 33)	57938	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding
chipseq_peak_12157	chr7	58093299	58094487	+	0	NA	Intergenic	Intergenic	502720	NM_008071	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding
chipseq_peak_1604	chr10	58798105	58798500	+	0	NA	Intergenic	Intergenic	-15057	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding
chipseq_peak_11999	chr6	144876428	144877181	+	0	NA	Intergenic	Intergenic	172008	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding
chipseq_peak_9502	chr4	12533968	12534834	+	0	NA	Intergenic	Intergenic	-362386	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
chipseq_peak_1180	chr1	189048256	189048964	+	0	NA	Intergenic	Intergenic	-40770	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
chipseq_peak_9456	chr4	6225422	6225876	+	0	NA	Intergenic	Intergenic	34544	NM_026534	68053	Mm.404043	NM_026534		Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding
chipseq_peak_13958	chr9	122310065	122310979	+	0	NA	Intergenic	Intergenic	-16099	NM_001271873	102566	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding
chipseq_peak_558	chr1	80073823	80074539	+	0	NA	Intergenic	Intergenic	139763	NM_173425	241128	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding
chipseq_peak_3243	chr12	86086661	86087144	+	0	NA	intron (NM_001199843, intron 2 of 8)	intron (NM_001199843, intron 2 of 8)	4341	NM_029601	76411	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding
chipseq_peak_8445	chr3	9378447	9379027	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-24341	NR_015499	320088	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA
chipseq_peak_7134	chr19	22196904	22197341	+	0	NA	intron (NM_001035239, intron 1 of 24)	intron (NM_001035239, intron 1 of 24)	58005	NM_001035242	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding
chipseq_peak_4179	chr14	20825516	20826192	+	0	NA	Intergenic	Intergenic	-10808	NM_008873	18792	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding
chipseq_peak_6397	chr17	69229551	69230798	+	0	NA	intron (NM_013813, intron 3 of 21)	intron (NM_013813, intron 3 of 21)	47032	NR_045428	69750	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA
chipseq_peak_6989	chr18	70096495	70097395	+	0	NA	intron (NM_001082553, intron 2 of 6)	intron (NM_001082553, intron 2 of 6)	-43357	NM_001302799	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding
chipseq_peak_6195	chr17	11861326	11861687	+	0	NA	intron (NM_016694, intron 9 of 11)	intron (NM_016694, intron 9 of 11)	21683	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA
chipseq_peak_2234	chr11	29840761	29841143	+	0	NA	intron (NM_146016, intron 10 of 41)	intron (NM_146016, intron 10 of 41)	-15284	NM_176829	216622	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding
chipseq_peak_645	chr1	98047733	98049638	+	0	NA	promoter-TSS (NR_037993)	promoter-TSS (NR_037993)	-892	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA
chipseq_peak_12665	chr8	16894449	16895793	+	0	NA	intron (NM_053171, intron 3 of 69)	intron (NM_053171, intron 3 of 69)	640264	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
chipseq_peak_13512	chr9	47652564	47653370	+	0	NA	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	122615	NM_207675	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding
chipseq_peak_8265	chr2	141712122	141712663	+	0	NA	intron (NM_001013802, intron 6 of 18)	intron (NM_001013802, intron 6 of 18)	-1040916	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_11267	chr6	21417088	21419781	+	0	NA	intron (NM_019697, intron 1 of 5)	intron (NM_019697, intron 1 of 5)	202325	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding
chipseq_peak_10311	chr5	16092739	16093947	+	0	NA	intron (NM_009784, intron 3 of 37)	intron (NM_009784, intron 3 of 37)	158652	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_11892	chr6	119159912	119160340	+	0	NA	intron (NM_001255997, intron 1 of 46)	Lx8b|LINE|L1	-15127	NM_001033379	319618	Mm.250197	NM_001033379	ENSMUSG00000041477	Dcp1b	B930050E02Rik	DCP1 decapping enzyme homolog B (S. cerevisiae)	protein-coding
chipseq_peak_6034	chr16	77642637	77647201	+	0	NA	Intergenic	T-rich|Low_complexity|Low_complexity	-1354	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_6214	chr17	29687958	29688930	+	0	NA	intron (NM_028791, intron 10 of 23)	intron (NM_028791, intron 10 of 23)	27849	NM_028791	74157	Mm.390979	NM_028791		Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding
chipseq_peak_7042	chr18	85289375	85289891	+	0	NA	Intergenic	Intergenic	-338109	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding
chipseq_peak_7549	chr2	36059527	36059876	+	0	NA	intron (NM_029309, intron 4 of 4)	AT_rich|Low_complexity|Low_complexity	10228	NM_029309	75495	Mm.276332	NM_029309	ENSMUSG00000026894	Morn5	1700010A17Rik	MORN repeat containing 5	protein-coding
chipseq_peak_11682	chr6	96446314	96446765	+	0	NA	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	-280334	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo
chipseq_peak_6244	chr17	41453470	41454471	+	0	NA	Intergenic	Intergenic	519285	NM_008650	17850	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding
chipseq_peak_7357	chr2	4245113	4245420	+	0	NA	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	92403	NM_172475	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding
chipseq_peak_6650	chr18	22893937	22894283	+	0	NA	intron (NM_001161483, intron 5 of 10)	intron (NM_001161483, intron 5 of 10)	144553	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding
chipseq_peak_2649	chr12	6380676	6381189	+	0	NA	Intergenic	MER127|DNA|TcMar-Tigger	999398	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_5915	chr16	70837961	70839945	+	0	NA	Intergenic	Intergenic	222528	NR_040474	52645	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA
chipseq_peak_12068	chr7	37870943	37871563	+	0	NA	Intergenic	Intergenic	-101501	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding
chipseq_peak_2458	chr11	81624124	81626685	+	0	NA	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	-51865	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding
chipseq_peak_1503	chr10	43312278	43312793	+	0	NA	intron (NM_027772, intron 2 of 7)	intron (NM_027772, intron 2 of 7)	91049	NM_027772	71365	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding
chipseq_peak_12009	chr6	146957031	146957511	+	0	NA	intron (NM_001170433, intron 2 of 27)	intron (NM_001170433, intron 2 of 27)	-2850	NM_001164236	73344	Mm.391543	NM_028509	ENSMUSG00000040163	1700034J05Rik	-	RIKEN cDNA 1700034J05 gene	protein-coding
chipseq_peak_6272	chr17	49282704	49283047	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	30085	NR_033486	100415784	Mm.400421	NR_033486		Gm17830	-	predicted gene, 17830	ncRNA
chipseq_peak_12772	chr8	40432297	40432597	+	0	NA	intron (NM_178395, intron 1 of 12)	intron (NM_178395, intron 1 of 12)	8632	NM_178395	70546	Mm.34326	NM_178395		Zdhhc2	5730415P04Rik|6430583A19Rik	zinc finger, DHHC domain containing 2	protein-coding
chipseq_peak_11820	chr6	108054830	108055305	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-9978	NM_178391	74729	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding
chipseq_peak_1874	chr10	100556611	100557110	+	0	NA	intron (NM_146009, intron 43 of 52)	intron (NM_146009, intron 43 of 52)	32399	NM_175128	68281	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding
chipseq_peak_12643	chr8	13640515	13641025	+	0	NA	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	36817	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|scat	RAS p21 protein activator 3	protein-coding
chipseq_peak_5301	chr15	70751911	70753467	+	0	NA	Intergenic	L1MDa|LINE|L1	828456	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_2000	chr10	113295713	113296379	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	-290532	NR_035418	100316831		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA
chipseq_peak_10846	chr5	102109986	102110671	+	0	NA	Intergenic	Intergenic	-40407	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding
chipseq_peak_11842	chr6	110694077	110695376	+	0	NA	intron (NM_177328, intron 1 of 9)	intron (NM_177328, intron 1 of 9)	49128	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_11438	chr6	44155249	44155900	+	0	NA	Intergenic	Intergenic	-489296	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
chipseq_peak_14128	chrX	162206424	162206663	+	0	NA	Intergenic	Intergenic	-47102	NM_001081052	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding
chipseq_peak_5485	chr16	6658670	6659043	+	0	NA	intron (NM_021477, intron 4 of 16)	intron (NM_021477, intron 4 of 16)	-410979	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_7344	chr19	60500440	60500675	+	0	NA	Intergenic	Intergenic	-32253	NM_201615	226278	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding
chipseq_peak_1897	chr10	102670052	102670788	+	0	NA	Intergenic	Intergenic	158198	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding
chipseq_peak_7243	chr19	37991263	37992759	+	0	NA	intron (NM_001099634, intron 5 of 52)	intron (NM_001099634, intron 5 of 52)	51566	NM_001302140	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding
chipseq_peak_8595	chr3	35213218	35213938	+	0	NA	Intergenic	Intergenic	-290927	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA
chipseq_peak_9831	chr4	58400930	58401451	+	0	NA	Intergenic	Intergenic	39908	NR_037278	100526502		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA
chipseq_peak_4009	chr13	107546359	107547528	+	0	NA	Intergenic	Intergenic	77121	NR_045084	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA
chipseq_peak_1729	chr10	78726996	78728243	+	0	NA	Intergenic	(TTCCC)n|Simple_repeat|Simple_repeat	-9326	NM_009809	12365	Mm.20940	NM_009809	ENSMUSG00000005355	Casp14	MICE|mini-ICE	caspase 14	protein-coding
chipseq_peak_4898	chr15	22758955	22759820	+	0	NA	Intergenic	Intergenic	-44403	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding
chipseq_peak_12088	chr7	49382882	49383300	+	0	NA	intron (NM_001111016, intron 4 of 38)	intron (NM_001111016, intron 4 of 38)	136902	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
chipseq_peak_5543	chr16	24990045	24991702	+	0	NA	3' UTR (NM_178665, exon 13 of 13)	3' UTR (NM_178665, exon 13 of 13)	-68766	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA
chipseq_peak_13762	chr9	93008331	93009622	+	0	NA	Intergenic	Intergenic	-3243	NR_040756	78349	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA
chipseq_peak_12118	chr7	54338793	54341197	+	0	NA	Intergenic	Intergenic	-448106	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
chipseq_peak_5668	chr16	42078879	42080502	+	0	NA	intron (NM_175548, intron 3 of 5)	intron (NM_175548, intron 3 of 5)	223779	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
chipseq_peak_4776	chr15	8634103	8634808	+	0	NA	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	76352	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
chipseq_peak_4728	chr14	119422693	119423609	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	284886	NM_015820	50787	Mm.445777	NM_015820		Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
chipseq_peak_11593	chr6	75451614	75453052	+	0	NA	Intergenic	Intergenic	-1790384	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_6810	chr18	50312190	50312977	+	0	NA	Intergenic	Intergenic	34214	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding
chipseq_peak_5796	chr16	56392912	56393225	+	0	NA	Intergenic	Intergenic	-84778	NM_001014399	320712	Mm.209236	NM_178790	ENSMUSG00000035258	Abi3bp	5033411B22Rik|AI506287|BG172926|D930038M13Rik|TARSH|eratin	ABI gene family, member 3 (NESH) binding protein	protein-coding
chipseq_peak_3826	chr13	84564557	84566543	+	0	NA	Intergenic	Intergenic	343254	NR_029419	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
chipseq_peak_196	chr1	33175030	33175369	+	0	NA	Intergenic	Intergenic	494595	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding
chipseq_peak_13868	chr9	107777149	107777601	+	0	NA	intron (NM_029169, intron 19 of 20)	intron (NM_029169, intron 19 of 20)	-6373	NM_148930	83486	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding
chipseq_peak_10945	chr5	117466422	117466674	+	0	NA	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	52546	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding
chipseq_peak_1963	chr10	109517349	109517908	+	0	NA	Intergenic	L1MA5|LINE|L1	482591	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding
chipseq_peak_6814	chr18	50525284	50526031	+	0	NA	Intergenic	Intergenic	43042	NM_026108	67365	Mm.158150	NM_026108	ENSMUSG00000048875	Hdhd1a	1700121L12Rik|GS1|Hdhd1	haloacid dehalogenase-like hydrolase domain containing 1A	protein-coding
chipseq_peak_7474	chr2	14656665	14657548	+	0	NA	intron (NM_023116, intron 2 of 13)	intron (NM_023116, intron 2 of 13)	52800	NM_023116	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding
chipseq_peak_10779	chr5	89141719	89142341	+	0	NA	intron (NM_001197147, intron 12 of 25)	intron (NM_001197147, intron 12 of 25)	254770	NM_001197147	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding
chipseq_peak_7170	chr19	26475257	26476154	+	0	NA	Intergenic	Intergenic	-129455	NM_011416	67155	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
chipseq_peak_2698	chr12	12578185	12578692	+	0	NA	Intergenic	Intergenic	-185963	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
chipseq_peak_13138	chr8	101802902	101803672	+	0	NA	Intergenic	Intergenic	981824	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_1925	chr10	106238078	106239383	+	0	NA	Intergenic	Intergenic	-231580	NM_001205341	327814	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding
chipseq_peak_11728	chr6	99668720	99670212	+	0	NA	Intergenic	MIRc|SINE|MIR	-2695	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding
chipseq_peak_7486	chr2	17415392	17415679	+	0	NA	intron (NM_028757, intron 4 of 6)	intron (NM_028757, intron 4 of 6)	-147979	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA
chipseq_peak_9194	chr3	123629240	123629947	+	0	NA	intron (NR_121616, intron 3 of 13)	intron (NR_121616, intron 3 of 13)	-10143	NM_001293682	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding
chipseq_peak_13886	chr9	112189214	112190448	+	0	NA	intron (NM_001177619, intron 1 of 10)	intron (NM_001177619, intron 1 of 10)	-1902	NM_001177620	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding
chipseq_peak_10055	chr4	95648977	95649770	+	0	NA	intron (NM_001113412, intron 5 of 15)	intron (NM_001113412, intron 5 of 15)	69952	NM_029347	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding
chipseq_peak_14044	chrX	78769422	78769815	+	0	NA	Intergenic	Intergenic	31855	NM_001164739	70864	Mm.66681	NM_001164739	ENSMUSG00000078315	Fam47c	4921509A18Rik|Fam47a|Fam47a-ps	family with sequence similarity 47, member C	protein-coding
chipseq_peak_11455	chr6	46704072	46705159	+	0	NA	intron (NM_001004357, intron 13 of 23)	intron (NM_001004357, intron 13 of 23)	-539781	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_12235	chr7	75328874	75329355	+	0	NA	intron (NR_045814, intron 2 of 2)	intron (NR_045814, intron 2 of 2)	-19852	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding
chipseq_peak_12896	chr8	56149896	56150901	+	0	NA	Intergenic	Intergenic	-144154	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding
chipseq_peak_1324	chr10	19429116	19429421	+	0	NA	Intergenic	Intergenic	72729	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
chipseq_peak_328	chr1	51513373	51513786	+	0	NA	Intergenic	Intergenic	-35180	NM_001310548	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding
chipseq_peak_10603	chr5	66492526	66492892	+	0	NA	intron (NM_001310626, intron 2 of 15)	intron (NM_001310626, intron 2 of 15)	126108	NM_001201413	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
chipseq_peak_5127	chr15	52565320	52565993	+	0	NA	Intergenic	Intergenic	-146789	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
chipseq_peak_11701	chr6	98132602	98133561	+	0	NA	Intergenic	Intergenic	141298	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding
chipseq_peak_1753	chr10	87109130	87109591	+	0	NA	intron (NM_029685, intron 2 of 5)	intron (NM_029685, intron 2 of 5)	51314	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding
chipseq_peak_2796	chr12	30244235	30244613	+	0	NA	intron (NM_172951, intron 10 of 16)	intron (NM_172951, intron 10 of 16)	-111800	NM_009417	22018	Mm.4991	NM_009417	ENSMUSG00000020673	Tpo	-	thyroid peroxidase	protein-coding
chipseq_peak_13568	chr9	52767069	52768623	+	0	NA	intron (NR_045333, intron 2 of 4)	intron (NR_045333, intron 2 of 4)	87983	NR_045333	382139	Mm.335162	NR_045333		Gm1715	-	predicted gene 1715	ncRNA
chipseq_peak_11947	chr6	138761879	138762680	+	0	NA	Intergenic	Intergenic	-103835	NM_015777	50540	Mm.84043	NM_015777	ENSMUSG00000046717	Igbp1b	alpha4-b	immunoglobulin (CD79A) binding protein 1b	protein-coding
chipseq_peak_5634	chr16	39862703	39863613	+	0	NA	Intergenic	Intergenic	960813	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
chipseq_peak_6951	chr18	67700775	67701231	+	0	NA	intron (NM_001127177, intron 2 of 8)	intron (NM_001127177, intron 2 of 8)	23618	NM_008977	19255	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding
chipseq_peak_7234	chr19	36641083	36641523	+	0	NA	intron (NR_033510, intron 3 of 4)	intron (NR_033510, intron 3 of 4)	48176	NR_033510	668215	Mm.394223	NR_033510	ENSMUSG00000087579	1500017E21Rik	-	RIKEN cDNA 1500017E21 gene	ncRNA
chipseq_peak_10036	chr4	91244358	91244793	+	0	NA	Intergenic	Intergenic	127480	NM_207686	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding
chipseq_peak_6704	chr18	30588265	30589367	+	0	NA	Intergenic	Intergenic	315920	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_3829	chr13	84749046	84754877	+	0	NA	Intergenic	Intergenic	-437516	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
chipseq_peak_13410	chr9	29455096	29457154	+	0	NA	intron (NM_172290, intron 1 of 7)	L3|LINE|CR1	507004	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_5359	chr15	84727783	84728256	+	0	NA	intron (NM_028455, intron 1 of 11)	intron (NM_028455, intron 1 of 11)	-7753	NR_040347	328576	Mm.400211	NR_040347		Gm20556	A430075N02	predicted gene, 20556	ncRNA
chipseq_peak_10896	chr5	111123338	111123851	+	0	NA	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	119450	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_6937	chr18	66831628	66832099	+	0	NA	Intergenic	Intergenic	28624	NM_016977	17202	Mm.229447	NM_016977	ENSMUSG00000047259	Mc4r	Mc4-r	melanocortin 4 receptor	protein-coding
chipseq_peak_1727	chr10	77315513	77316141	+	0	NA	intron (NR_004429, intron 5 of 10)	MTE-int|LTR|ERVL-MaLR	56527	NM_030262	80294	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding
chipseq_peak_9268	chr3	137647274	137648179	+	0	NA	Intergenic	Intergenic	24054	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding
chipseq_peak_1748	chr10	86425718	86426168	+	0	NA	intron (NM_013722, intron 3 of 13)	intron (NM_013722, intron 3 of 13)	72953	NM_013722	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding
chipseq_peak_11489	chr6	50847299	50847808	+	0	NA	Intergenic	Intergenic	71438	NR_045984	319981	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA
chipseq_peak_2997	chr12	53405506	53406124	+	0	NA	intron (NM_013780, intron 2 of 11)	intron (NM_013780, intron 2 of 11)	157138	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding
chipseq_peak_4114	chr13	117880301	117881698	+	0	NA	intron (NM_010408, intron 4 of 7)	intron (NM_010408, intron 4 of 7)	-160988	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
chipseq_peak_3102	chr12	68599551	68600072	+	0	NA	Intergenic	Intergenic	559375	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding
chipseq_peak_10658	chr5	72389413	72390256	+	0	NA	intron (NM_016869, intron 5 of 21)	B3A|SINE|B2	114374	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding
chipseq_peak_5213	chr15	62952892	62953713	+	0	NA	Intergenic	Intergenic	526306	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA
chipseq_peak_1654	chr10	67918174	67918543	+	0	NA	Intergenic	Intergenic	-5696	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding
chipseq_peak_1702	chr10	71893552	71894306	+	0	NA	Intergenic	Intergenic	86761	NR_003644	108950	Mm.212793	NM_175390	ENSMUSG00000043859	1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo
chipseq_peak_9015	chr3	89688853	89689499	+	0	NA	Intergenic	Intergenic	-25846	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding
chipseq_peak_3959	chr13	101158821	101159897	+	0	NA	Intergenic	B4A|SINE|B4	-72768	NR_046158	328324	Mm.402274	NR_046158		5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA
chipseq_peak_5581	chr16	29216107	29217155	+	0	NA	intron (NM_013751, intron 1 of 3)	intron (NM_013751, intron 1 of 3)	6936	NM_013751	27281	Mm.103650	NM_013751	ENSMUSG00000022525	Hrasls	2810012B06Rik|A-C1|HRSL1|Hrasrs	HRAS-like suppressor	protein-coding
chipseq_peak_1235	chr10	6916268	6917129	+	0	NA	TTS (NM_001170802)	TTS (NM_001170802)	63767	NM_001170801	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding
chipseq_peak_2739	chr12	25492483	25493618	+	0	NA	Intergenic	Intergenic	363876	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA
chipseq_peak_4236	chr14	32016802	32017830	+	0	NA	Intergenic	Intergenic	-11787	NM_030166	78754	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding
chipseq_peak_3635	chr13	53029465	53029825	+	0	NA	Intergenic	Intergenic	-48606	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding
chipseq_peak_10304	chr5	15779428	15780113	+	0	NA	Intergenic	Intergenic	-65499	NM_001281511	100502967	Mm.425235	NM_001281511	ENSMUSG00000073208	Speer4c	4933431D05Rik|SPEER-4C	spermatogenesis associated glutamate (E)-rich protein 4C	protein-coding
chipseq_peak_14113	chrX	158713957	158714513	+	0	NA	Intergenic	Intergenic	-541547	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding
chipseq_peak_4821	chr15	13917257	13917608	+	0	NA	Intergenic	Intergenic	-743757	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_6744	chr18	35449924	35450409	+	0	NA	intron (NM_030749, intron 1 of 9)	intron (NM_030749, intron 1 of 9)	48759	NM_030749	81500	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding
chipseq_peak_5344	chr15	81860080	81860590	+	0	NA	Intergenic	Intergenic	-2009	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding
chipseq_peak_8007	chr2	97477809	97478484	+	0	NA	intron (NM_001289744, intron 1 of 1)	intron (NM_001289744, intron 1 of 1)	10489	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_2224	chr11	26818134	26820331	+	0	NA	Intergenic	Intergenic	34124	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_9823	chr4	55194608	55195012	+	0	NA	Intergenic	Intergenic	-155232	NM_009011	19359	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23b homolog (S. cerevisiae)	protein-coding
chipseq_peak_11096	chr5	144083470	144083941	+	0	NA	Intergenic	Intergenic	-16731	NM_001081109	231876	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding
chipseq_peak_13902	chr9	112732612	112733282	+	0	NA	Intergenic	Intergenic	476373	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_5857	chr16	64264593	64265944	+	0	NA	Intergenic	Intergenic	213866	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding
chipseq_peak_3918	chr13	96426048	96427728	+	0	NA	intron (NM_001042714, intron 10 of 13)	intron (NM_001042714, intron 10 of 13)	38594	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein homolog (Chlamydomonas)	protein-coding
chipseq_peak_9479	chr4	7595844	7596545	+	0	NA	Intergenic	Intergenic	35506	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA
chipseq_peak_7773	chr2	58773861	58774351	+	0	NA	intron (NM_001289659, intron 4 of 7)	intron (NM_001289659, intron 4 of 7)	18922	NM_001289659	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
chipseq_peak_13075	chr8	90398475	90398906	+	0	NA	Intergenic	Intergenic	-50438	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
chipseq_peak_10709	chr5	80659088	80659506	+	0	NA	Intergenic	Intergenic	-362296	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_9219	chr3	127184206	127185263	+	0	NA	Intergenic	Intergenic	23429	NR_105030	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA
chipseq_peak_14140	chrX	166805795	166806789	+	0	NA	Intergenic	Intergenic	144267	NR_046015	382255	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA
chipseq_peak_13427	chr9	31280311	31282540	+	0	NA	Intergenic	Intergenic	10024	NM_001101597	638580	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding
chipseq_peak_10671	chr5	74027774	74028454	+	0	NA	intron (NM_177561, intron 4 of 8)	intron (NM_177561, intron 4 of 8)	40297	NM_177561	69727	Mm.48795	NM_177561		Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding
chipseq_peak_10843	chr5	102075665	102075959	+	0	NA	Intergenic	Intergenic	-5891	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding
chipseq_peak_1664	chr10	68182345	68182662	+	0	NA	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	96223	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding
chipseq_peak_90	chr1	21803393	21805135	+	0	NA	intron (NM_001310477, intron 1 of 12)	MIRb|SINE|MIR	157678	NM_023872	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding
chipseq_peak_8195	chr2	134767030	134767382	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	-18958	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding
chipseq_peak_1864	chr10	99587140	99587889	+	0	NA	Intergenic	Intergenic	-21657	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA
chipseq_peak_1626	chr10	64268157	64268690	+	0	NA	intron (NM_001164376, intron 9 of 17)	intron (NM_001164376, intron 9 of 17)	-178168	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_5939	chr16	72838939	72839579	+	0	NA	intron (NM_019413, intron 2 of 28)	intron (NM_019413, intron 2 of 28)	176110	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_3677	chr13	60444943	60445454	+	0	NA	Intergenic	Intergenic	-156749	NM_029653	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding
chipseq_peak_11166	chr6	11710360	11711691	+	0	NA	Intergenic	L1MC1|LINE|L1	196421	NM_010886	17992	Mm.415865	NM_010886	ENSMUSG00000029632	Ndufa4	MLRQ	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	protein-coding
chipseq_peak_9205	chr3	124365639	124366469	+	0	NA	Intergenic	Intergenic	45017	NM_146140	229801	Mm.165810	NM_146140		Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding
chipseq_peak_2634	chr12	5239831	5240145	+	0	NA	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	135694	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding
chipseq_peak_12820	chr8	48146397	48146785	+	0	NA	Intergenic	Intergenic	36578	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding
chipseq_peak_9605	chr4	23796719	23797290	+	0	NA	Intergenic	Intergenic	-699458	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_5716	chr16	47633074	47633437	+	0	NA	Intergenic	Intergenic	-650480	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
chipseq_peak_13013	chr8	77364447	77364890	+	0	NA	intron (NM_030113, intron 14 of 22)	intron (NM_030113, intron 14 of 22)	-152388	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA
chipseq_peak_5425	chr15	95192240	95194268	+	0	NA	Intergenic	Intergenic	-43936	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_2914	chr12	44386236	44386749	+	0	NA	intron (NM_176930, intron 1 of 30)	intron (NM_176930, intron 1 of 30)	57607	NM_176930	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding
chipseq_peak_5061	chr15	44750258	44751553	+	0	NA	intron (NM_176998, intron 1 of 7)	intron (NM_176998, intron 1 of 7)	1553	NM_178765	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_10898	chr5	111204941	111205472	+	0	NA	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-125491	NM_001301643	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding
chipseq_peak_2932	chr12	48439152	48440567	+	0	NA	Intergenic	Lx2B2|LINE|L1	-138397	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA
chipseq_peak_1579	chr10	53995995	53997516	+	0	NA	intron (NM_008548, intron 5 of 12)	intron (NM_008548, intron 5 of 12)	79041	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding
chipseq_peak_9003	chr3	85923606	85924183	+	0	NA	Intergenic	Intergenic	-36376	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding
chipseq_peak_4360	chr14	64488994	64490592	+	0	NA	Intergenic	Intergenic	-33890	NM_026322	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_13951	chr9	121164340	121164999	+	0	NA	intron (NM_177589, intron 22 of 36)	intron (NM_177589, intron 22 of 36)	112503	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding
chipseq_peak_395	chr1	56548235	56548848	+	0	NA	Intergenic	Intergenic	88910	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
chipseq_peak_4429	chr14	76760542	76761119	+	0	NA	Intergenic	Intergenic	83262	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA
chipseq_peak_9107	chr3	116999787	117001010	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-31446	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding
chipseq_peak_11700	chr6	98112152	98113185	+	0	NA	Intergenic	Intergenic	120885	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding
chipseq_peak_8446	chr3	9400280	9400674	+	0	NA	Intergenic	Intergenic	-2601	NR_015499	320088	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA
chipseq_peak_891	chr1	144189106	144190641	+	0	NA	Intergenic	Intergenic	-12501	NM_153171	246709	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding
chipseq_peak_11255	chr6	18688132	18689690	+	0	NA	Intergenic	Intergenic	-159724	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
chipseq_peak_13479	chr9	41498319	41498756	+	0	NA	intron (NR_131930, intron 2 of 3)	intron (NR_131930, intron 2 of 3)	23644	NR_131931	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA
chipseq_peak_9432	chr3	158330446	158331662	+	0	NA	intron (NM_001081358, intron 4 of 27)	intron (NM_001081358, intron 4 of 27)	231167	NM_001291452	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding
chipseq_peak_306	chr1	47263760	47264252	+	0	NA	Intergenic	Intergenic	203119	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
chipseq_peak_12617	chr8	9400356	9400703	+	0	NA	intron (NM_173446, intron 1 of 2)	intron (NM_173446, intron 1 of 2)	255860	NR_073360	74688	Mm.159298	NR_073360		4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA
chipseq_peak_3192	chr12	77491435	77491813	+	0	NA	Intergenic	L1MA9|LINE|L1	81483	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding
chipseq_peak_3264	chr12	92035805	92036480	+	0	NA	Intergenic	Intergenic	-186985	NM_001039089	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chipseq_peak_13816	chr9	101903126	101903913	+	0	NA	Intergenic	Intergenic	401456	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA
chipseq_peak_9864	chr4	69538119	69538737	+	0	NA	Intergenic	Tigger16a|DNA|TcMar-Tigger	-584031	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding
chipseq_peak_2969	chr12	50946919	50947348	+	0	NA	Intergenic	Intergenic	-58023	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
chipseq_peak_4528	chr14	90797323	90798459	+	0	NA	Intergenic	Intergenic	671000	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
chipseq_peak_4295	chr14	49507195	49507911	+	0	NA	intron (NM_029238, intron 1 of 7)	HAL1|LINE|L1	18284	NM_029238	75288	Mm.78738	NM_029238	ENSMUSG00000021852	Slc35f4	4930550L21Rik	solute carrier family 35, member F4	protein-coding
chipseq_peak_9761	chr4	46202278	46204298	+	0	NA	Intergenic	Intergenic	-6977	NM_011728	22590	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding
chipseq_peak_1554	chr10	51124483	51124808	+	0	NA	Intergenic	Intergenic	228994	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding
chipseq_peak_4629	chr14	106687650	106688052	+	0	NA	Intergenic	Intergenic	-201331	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
chipseq_peak_5606	chr16	34521153	34521656	+	0	NA	Intergenic	Charlie2a|DNA|hAT-Charlie	-7377	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding
chipseq_peak_10180	chr4	127883419	127884098	+	0	NA	Intergenic	L1M5|LINE|L1	87083	NM_001134733	635169	Mm.346755	NM_001134733	ENSMUSG00000028813	CK137956	-	cDNA sequence CK137956	protein-coding
chipseq_peak_2834	chr12	34574197	34574607	+	0	NA	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-45513	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
chipseq_peak_12846	chr8	49826221	49826667	+	0	NA	Intergenic	Intergenic	-541668	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
chipseq_peak_1322	chr10	19277195	19277651	+	0	NA	Intergenic	Intergenic	-79116	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
chipseq_peak_5814	chr16	60544330	60544986	+	0	NA	intron (NM_007938, intron 1 of 17)	intron (NM_007938, intron 1 of 17)	60873	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding
chipseq_peak_13680	chr9	73258030	73258741	+	0	NA	Intergenic	Intergenic	144916	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding
chipseq_peak_1851	chr10	98941944	98942360	+	0	NA	intron (NM_026482, intron 1 of 20)	intron (NM_026482, intron 1 of 20)	27000	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding
chipseq_peak_2289	chr11	40027127	40027832	+	0	NA	Intergenic	Intergenic	-637254	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_4845	chr15	18065120	18065914	+	0	NA	Intergenic	Intergenic	304110	NR_045711	70886	Mm.399021	NR_045711		4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA
chipseq_peak_1408	chr10	29424418	29425362	+	0	NA	Intergenic	Intergenic	-62448	NM_001110198	68031	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding
chipseq_peak_10951	chr5	118327093	118327403	+	0	NA	Intergenic	Intergenic	82021	NM_001081236	76792	Mm.103428	NM_001081236		2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding
chipseq_peak_13012	chr8	77294494	77295065	+	0	NA	intron (NM_030113, intron 19 of 22)	intron (NM_030113, intron 19 of 22)	-222277	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA
chipseq_peak_11872	chr6	115672167	115672600	+	0	NA	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	4252	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding
chipseq_peak_10833	chr5	98998123	98998434	+	0	NA	intron (NM_008926, intron 2 of 18)	intron (NM_008926, intron 2 of 18)	38801	NM_008926	19092	Mm.263002	NM_008926	ENSMUSG00000029334	Prkg2	AW212535|CGKII|Prkgr2|cGK-II	protein kinase, cGMP-dependent, type II	protein-coding
chipseq_peak_8871	chr3	71959257	71960427	+	0	NA	Intergenic	Intergenic	1007024	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding
chipseq_peak_1752	chr10	86961554	86962220	+	0	NA	intron (NM_138673, intron 9 of 68)	intron (NM_138673, intron 9 of 68)	46055	NM_138673	192188	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding
chipseq_peak_826	chr1	137302746	137303472	+	0	NA	Intergenic	Intergenic	-342661	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding
chipseq_peak_9611	chr4	23921352	23921939	+	0	NA	Intergenic	L1MEg|LINE|L1	-574817	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_5577	chr16	28595908	28596486	+	0	NA	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	3846	NR_030463	751543		NR_030463	ENSMUSG00000076064	Mir690	Mirn690|mir-690|mmu-mir-690	microRNA 690	ncRNA
chipseq_peak_9438	chr3	158910344	158911002	+	0	NA	Intergenic	Intergenic	-165691	NR_040750	624759	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA
chipseq_peak_10620	chr5	67952579	67955434	+	0	NA	intron (NM_001256184, intron 2 of 3)	intron (NM_001256184, intron 2 of 3)	-10925	NR_038182	73865	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA
chipseq_peak_12493	chr7	121510184	121510902	+	0	NA	Intergenic	Intergenic	79293	NR_102286	75793	Mm.23397	NR_102286		4933432K03Rik	1700001C18Rik|4930433G11Rik|AI428127	RIKEN cDNA 4933432K03 gene	ncRNA
chipseq_peak_499	chr1	71356966	71357876	+	0	NA	intron (NM_175210, intron 3 of 52)	intron (NM_175210, intron 3 of 52)	57489	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
chipseq_peak_9190	chr3	123348089	123348928	+	0	NA	intron (NM_027135, intron 13 of 22)	intron (NM_027135, intron 13 of 22)	37482	NM_201638	210529	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding
chipseq_peak_10207	chr4	139933189	139933632	+	0	NA	promoter-TSS (NR_045160)	promoter-TSS (NR_045160)	-336	NR_045160	71235	Mm.61253	NR_045159	ENSMUSG00000085928	4933427I22Rik	-	RIKEN cDNA 4933427I22 gene	ncRNA
chipseq_peak_2547	chr11	103911158	103911456	+	0	NA	intron (NM_008740, intron 7 of 20)	AT_rich|Low_complexity|Low_complexity	42749	NM_008740	18195	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding
chipseq_peak_477	chr1	69708293	69709136	+	0	NA	Intergenic	Intergenic	-22754	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding
chipseq_peak_12219	chr7	73917779	73918520	+	0	NA	Intergenic	Intergenic	92225	NR_102375	100861851		NR_102375		Gm21269	-	predicted gene, 21269	ncRNA
chipseq_peak_8125	chr2	116009631	116010028	+	0	NA	intron (NM_001159567, intron 7 of 12)	intron (NM_001159567, intron 7 of 12)	54792	NM_001159569	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding
chipseq_peak_9309	chr3	142950933	142951212	+	0	NA	Intergenic	MTC-int|LTR|ERVL-MaLR	-69068	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding
chipseq_peak_6274	chr17	49690739	49691471	+	0	NA	intron (NM_177052, intron 6 of 22)	intron (NM_177052, intron 6 of 22)	75933	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding
chipseq_peak_5800	chr16	56830328	56830863	+	0	NA	intron (NM_019631, intron 1 of 5)	intron (NM_019631, intron 1 of 5)	-34737	NM_172825	239853	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding
chipseq_peak_12520	chr7	127744343	127746345	+	0	NA	Intergenic	Intergenic	-1431	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding
chipseq_peak_852	chr1	140295106	140296396	+	0	NA	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	49494	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding
chipseq_peak_733	chr1	119179607	119180286	+	0	NA	Intergenic	HAL1|LINE|L1	-126327	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding
chipseq_peak_11425	chr6	42199508	42200409	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-15370	NM_001001453	387515	Mm.377922	NM_001001453	ENSMUSG00000051917	Tas2r144	Tas2r40|Tas2r44|mt2r33	taste receptor, type 2, member 144	protein-coding
chipseq_peak_2896	chr12	41683183	41684008	+	0	NA	intron (NM_053122, intron 5 of 6)	intron (NM_053122, intron 5 of 6)	-197538	NM_001271709	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_4200	chr14	23684988	23685377	+	0	NA	intron (NM_001253374, intron 1 of 28)	intron (NM_001253374, intron 1 of 28)	319023	NM_001253370	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
chipseq_peak_1570	chr10	52992347	52993109	+	0	NA	intron (NM_178675, intron 2 of 7)	intron (NM_178675, intron 2 of 7)	-287542	NR_038015	100502820	Mm.55827	NR_038015		Gm19395	-	predicted gene, 19395	ncRNA
chipseq_peak_14094	chrX	144104636	144105300	+	0	NA	Intergenic	Intergenic	-48727	NR_040271	319764	Mm.208482	NR_040271	ENSMUSG00000085139	A730046J19Rik	-	RIKEN cDNA A730046J19 gene	ncRNA
chipseq_peak_3545	chr13	39959162	39959510	+	0	NA	Intergenic	(TAG)n|Simple_repeat|Simple_repeat	328675	NM_172143	218165	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding
chipseq_peak_8869	chr3	71919599	71920306	+	0	NA	Intergenic	Intergenic	1046914	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding
chipseq_peak_13529	chr9	49595064	49597435	+	0	NA	intron (NM_001113204, intron 1 of 18)	intron (NM_001113204, intron 1 of 18)	77961	NR_029465	100036537	Mm.437541	NR_029465		Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA
chipseq_peak_2278	chr11	39055467	39056478	+	0	NA	Intergenic	Intergenic	334253	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_402	chr1	56920195	56920941	+	0	NA	intron (NM_139146, intron 3 of 10)	intron (NM_139146, intron 3 of 10)	50766	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding
chipseq_peak_13503	chr9	43997619	43998032	+	0	NA	Intergenic	Intergenic	-45559	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding
chipseq_peak_12833	chr8	48739895	48740362	+	0	NA	Intergenic	Intergenic	-65438	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_11969	chr6	142781111	142781858	+	0	NA	Intergenic	Intergenic	22982	NM_001145390	330440	Mm.484618	NM_001033417	ENSMUSG00000048473	Gm766	-	predicted gene 766	protein-coding
chipseq_peak_13979	chrX	40350709	40351348	+	0	NA	Intergenic	Intergenic	-487424	NM_001191032	100504400	Mm.373409	NM_001191032	ENSMUSG00000095240	Cypt14	-	cysteine-rich perinuclear theca 14	protein-coding
chipseq_peak_1004	chr1	164544573	164544981	+	0	NA	Intergenic	MamGypLTR2b|LTR|Gypsy	-86422	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding
chipseq_peak_3442	chr13	16355199	16355918	+	0	NA	Intergenic	Lx7|LINE|L1	341083	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_1069	chr1	175625524	175626185	+	0	NA	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-219	NM_010209	14194	Mm.41502	NM_010209		Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding
chipseq_peak_10623	chr5	68097955	68098555	+	0	NA	intron (NM_001018019, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	66420	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding
chipseq_peak_6740	chr18	34456867	34458170	+	0	NA	intron (NM_146084, intron 12 of 20)	intron (NM_146084, intron 12 of 20)	48095	NM_001163004	53871	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding
chipseq_peak_582	chr1	84249866	84250143	+	0	NA	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-31043	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA
chipseq_peak_6954	chr18	67741688	67742385	+	0	NA	Intergenic	Intergenic	-17415	NM_001127177	19255	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding
chipseq_peak_6421	chr17	73713306	73713664	+	0	NA	Intergenic	Intergenic	-3034	NM_027864	71685	Mm.271953	NM_027864	ENSMUSG00000024064	Galnt14	0610033M06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	protein-coding
chipseq_peak_9634	chr4	25738864	25739185	+	0	NA	intron (NM_010243, intron 1 of 2)	intron (NM_010243, intron 1 of 2)	60979	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding
chipseq_peak_4143	chr14	12337603	12338071	+	0	NA	Intergenic	Intergenic	8028	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding
chipseq_peak_5902	chr16	70016751	70017756	+	0	NA	Intergenic	Intergenic	-153509	NM_173069	224318	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding
chipseq_peak_6133	chr16	97007709	97008350	+	0	NA	intron (NM_031174, intron 3 of 32)	intron (NM_031174, intron 3 of 32)	162706	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding
chipseq_peak_7757	chr2	57909553	57909943	+	0	NA	Intergenic	Intergenic	-88407	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
chipseq_peak_11940	chr6	137712540	137713649	+	0	NA	Intergenic	Intergenic	-21988	NM_011499	20901	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding
chipseq_peak_35	chr1	11267688	11269022	+	0	NA	intron (NM_029525, intron 37 of 39)	intron (NM_029525, intron 37 of 39)	4392	NM_001033636	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding
chipseq_peak_8306	chr2	144655051	144655606	+	0	NA	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	55375	NM_025314	66044	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding
chipseq_peak_2731	chr12	17060965	17061559	+	0	NA	Intergenic	Intergenic	-49535	NM_001201332	73667	Mm.159048	NM_001201332		2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding
chipseq_peak_4389	chr14	68934558	68935001	+	0	NA	Intergenic	Intergenic	-94510	NM_009285	20855	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding
chipseq_peak_3818	chr13	84061642	84066787	+	0	NA	intron (NR_131220, intron 1 of 1)	intron (NR_131220, intron 1 of 1)	560	NR_131220	553095	Mm.39702	NR_131220		Gm17750	-	predicted gene, 17750	ncRNA
chipseq_peak_4578	chr14	97170692	97171330	+	0	NA	Intergenic	Intergenic	-651977	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
chipseq_peak_11645	chr6	86879258	86879740	+	0	NA	intron (NM_177762, intron 1 of 19)	L1MB3|LINE|L1	29982	NM_001040106	269774	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding
chipseq_peak_6649	chr18	22849190	22851038	+	0	NA	intron (NM_001161483, intron 5 of 10)	intron (NM_001161483, intron 5 of 10)	188549	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding
chipseq_peak_10493	chr5	50457580	50457901	+	0	NA	Intergenic	Intergenic	204978	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
chipseq_peak_8297	chr2	143170640	143171107	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	92381	NM_020595	57329	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding
chipseq_peak_8592	chr3	34828068	34829224	+	0	NA	Intergenic	PB1D10|SINE|Alu	56571	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA
chipseq_peak_9292	chr3	140754823	140755414	+	0	NA	Intergenic	Intergenic	457237	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding
chipseq_peak_3326	chr12	102201491	102201800	+	0	NA	intron (NM_172152, intron 2 of 16)	MLT2C1|LTR|ERVL	72226	NM_172152	238384	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding
chipseq_peak_5510	chr16	12446414	12446808	+	0	NA	Intergenic	Intergenic	-364779	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA
chipseq_peak_2967	chr12	50804336	50805791	+	0	NA	Intergenic	Intergenic	-155840	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_12997	chr8	75375646	75377020	+	0	NA	Intergenic	Intergenic	-72361	NM_001164235	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding
chipseq_peak_5924	chr16	72215608	72216178	+	0	NA	Intergenic	Intergenic	18434	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA
chipseq_peak_13586	chr9	56738526	56739497	+	0	NA	Intergenic	Intergenic	-53758	NM_181074	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
chipseq_peak_13291	chr9	9548520	9549211	+	0	NA	Intergenic	MamRep605|LTR?|LTR?	-309852	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding
chipseq_peak_13452	chr9	37121875	37122362	+	0	NA	intron (NM_148950, intron 1 of 11)	intron (NM_148950, intron 1 of 11)	25204	NM_148950	208076	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding
chipseq_peak_5345	chr15	82381790	82382538	+	0	NA	Intergenic	Intergenic	-1904	NM_019823	56448	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding
chipseq_peak_5841	chr16	63761279	63761617	+	0	NA	intron (NM_010140, intron 3 of 16)	intron (NM_010140, intron 3 of 16)	102709	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
chipseq_peak_6473	chr17	83001478	83002019	+	0	NA	Intergenic	Intergenic	76477	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
chipseq_peak_1478	chr10	39320939	39321667	+	0	NA	Intergenic	Intergenic	-48496	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding
chipseq_peak_14112	chrX	158613743	158614634	+	0	NA	Intergenic	Intergenic	-570991	NM_001310719	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding
chipseq_peak_7099	chr19	17818969	17819441	+	0	NA	intron (NM_001190483, intron 1 of 37)	intron (NM_001190483, intron 1 of 37)	18427	NM_001163144	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding
chipseq_peak_3137	chr12	71747528	71750105	+	0	NA	Intergenic	Intergenic	-82252	NM_026102	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding
chipseq_peak_13010	chr8	76941316	76941907	+	0	NA	intron (NM_001083906, intron 2 of 8)	intron (NM_001083906, intron 2 of 8)	39103	NM_001083906	110784	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding
chipseq_peak_8927	chr3	80204414	80205771	+	0	NA	Intergenic	Intergenic	319162	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_2297	chr11	40775500	40776211	+	0	NA	Intergenic	Intergenic	-20569	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding
chipseq_peak_637	chr1	97624275	97624723	+	0	NA	Intergenic	Intergenic	37519	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding
chipseq_peak_1207	chr1	193685107	193685385	+	0	NA	Intergenic	Intergenic	-177716	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA
chipseq_peak_3127	chr12	70531607	70532500	+	0	NA	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	78899	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding
chipseq_peak_2083	chr10	125117896	125118989	+	0	NA	Intergenic	Intergenic	210093	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
chipseq_peak_10004	chr4	86286515	86286944	+	0	NA	intron (NM_029967, intron 13 of 27)	intron (NM_029967, intron 13 of 27)	232814	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding
chipseq_peak_9242	chr3	133757863	133758490	+	0	NA	Intergenic	Intergenic	-213786	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding
chipseq_peak_5143	chr15	54458197	54458585	+	0	NA	intron (NM_173422, intron 4 of 5)	intron (NM_173422, intron 4 of 5)	47617	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding
chipseq_peak_3834	chr13	84783391	84784067	+	0	NA	Intergenic	Intergenic	-405748	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
chipseq_peak_8651	chr3	43029967	43030866	+	0	NA	Intergenic	Intergenic	1287798	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
chipseq_peak_2397	chr11	68580564	68580865	+	0	NA	Intergenic	ORSL-2b|DNA|hAT-Tip100	-6323	NM_177779	276920	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding
chipseq_peak_2734	chr12	17159517	17159899	+	0	NA	Intergenic	Intergenic	17180	NM_201531	382571	Mm.40173	NM_201531	ENSMUSG00000051726	Kcnf1	Gm1182|Kv5.1	potassium voltage-gated channel, subfamily F, member 1	protein-coding
chipseq_peak_999	chr1	163958077	163958435	+	0	NA	intron (NM_201364, intron 20 of 23)	intron (NM_201364, intron 20 of 23)	28491	NM_001286003	240880	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding
chipseq_peak_12701	chr8	28961163	28961486	+	0	NA	intron (NM_153135, intron 1 of 17)	intron (NM_153135, intron 1 of 17)	258312	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_11511	chr6	54478190	54479316	+	0	NA	intron (NM_001167860, intron 1 of 7)	intron (NM_001167860, intron 1 of 7)	25870	NM_001167861	330319	Mm.434326	NM_001167860	ENSMUSG00000086040	Wipf3	9030621G03|BQ952480	WAS/WASL interacting protein family, member 3	protein-coding
chipseq_peak_11111	chr5	148786614	148787049	+	0	NA	Intergenic	Intergenic	8868	NR_131106	78015	Mm.243839	NR_131106		4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA
chipseq_peak_1518	chr10	46006328	46006982	+	0	NA	Intergenic	Intergenic	198951	NR_040624	320363	Mm.123343	NR_040624		D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA
chipseq_peak_3381	chr13	5451183	5451777	+	0	NA	Intergenic	Intergenic	406612	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
chipseq_peak_12252	chr7	77325074	77325621	+	0	NA	Intergenic	Intergenic	1095460	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_962	chr1	158739548	158740046	+	0	NA	intron (NM_001085376, intron 20 of 21)	intron (NM_001085376, intron 20 of 21)	217641	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding
chipseq_peak_11057	chr5	134063744	134064091	+	0	NA	Intergenic	Intergenic	-35831	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
chipseq_peak_1784	chr10	91326288	91326611	+	0	NA	Intergenic	Intergenic	-154830	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
chipseq_peak_13724	chr9	84109832	84110990	+	0	NA	intron (NM_001305935, intron 9 of 10)	intron (NM_001305935, intron 9 of 10)	161630	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding
chipseq_peak_11141	chr6	6390176	6390568	+	0	NA	Intergenic	Intergenic	-173199	NM_001177572	50799	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding
chipseq_peak_9775	chr4	48371035	48371415	+	0	NA	intron (NM_001281977, intron 4 of 16)	intron (NM_001281977, intron 4 of 16)	91465	NM_001281977	16348	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding
chipseq_peak_13429	chr9	31979671	31980251	+	0	NA	Intergenic	Intergenic	-66676	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding
chipseq_peak_7581	chr2	42458411	42459193	+	0	NA	intron (NM_053011, intron 1 of 90)	intron (NM_053011, intron 1 of 90)	-11234	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
chipseq_peak_537	chr1	76509444	76509858	+	0	NA	promoter-TSS (NR_105761)	promoter-TSS (NR_105761)	91	NR_105761	102465175		NR_105761	ENSMUSG00000098611	Mir6343	Gm27304|mmu-mir-6343	microRNA 6343	ncRNA
chipseq_peak_11667	chr6	94207938	94208222	+	0	NA	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	29362	NR_130996	78178	Mm.452749	NR_130996		4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA
chipseq_peak_5600	chr16	33734616	33736069	+	0	NA	intron (NM_175256, intron 6 of 14)	intron (NM_175256, intron 6 of 14)	50876	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	HEG homolog 1 (zebrafish)	protein-coding
chipseq_peak_13185	chr8	109906371	109907476	+	0	NA	intron (NM_001122594, intron 4 of 18)	intron (NM_001122594, intron 4 of 18)	38320	NM_001122594	244650	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding
chipseq_peak_1007	chr1	164743250	164743881	+	0	NA	Intergenic	Intergenic	-53167	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding
chipseq_peak_4062	chr13	110673479	110674126	+	0	NA	Intergenic	Intergenic	-229697	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA
chipseq_peak_1184	chr1	189214591	189214996	+	0	NA	intron (NM_001281848, intron 5 of 5)	intron (NM_001281848, intron 5 of 5)	128560	NM_001159850	16526	Mm.33304	NM_010607	ENSMUSG00000037624	Kcnk2	A430027H14Rik|AI848635|TREK-1	potassium channel, subfamily K, member 2	protein-coding
chipseq_peak_713	chr1	111832667	111834291	+	0	NA	Intergenic	RSINE1|SINE|B4	31439	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
chipseq_peak_3268	chr12	92589107	92590968	+	0	NA	Intergenic	Intergenic	-740880	NM_001039089	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chipseq_peak_2322	chr11	42624276	42625016	+	0	NA	intron (NM_008070, intron 9 of 9)	intron (NM_008070, intron 9 of 9)	204889	NM_008070	14401	Mm.338723	NM_008070		Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding
chipseq_peak_6265	chr17	46328063	46328365	+	0	NA	promoter-TSS (NM_170680)	promoter-TSS (NM_170680)	-191	NM_170680	224814	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding
chipseq_peak_9012	chr3	89539922	89540469	+	0	NA	intron (NM_080466, intron 1 of 7)	intron (NM_080466, intron 1 of 7)	20031	NM_080466	140493	Mm.120250	NM_080466		Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding
chipseq_peak_5342	chr15	81128171	81128681	+	0	NA	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-23379	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding
chipseq_peak_5588	chr16	31501214	31502195	+	0	NA	Intergenic	Intergenic	72951	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding
chipseq_peak_5180	chr15	59954423	59954848	+	0	NA	Intergenic	Intergenic	61983	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding
chipseq_peak_6882	chr18	56152355	56153286	+	0	NA	Intergenic	Intergenic	-279312	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
chipseq_peak_1659	chr10	68038932	68040056	+	0	NA	intron (NM_001081346, intron 11 of 12)	intron (NM_001081346, intron 11 of 12)	59896	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding
chipseq_peak_1706	chr10	72613474	72614022	+	0	NA	Intergenic	Intergenic	-41098	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding
chipseq_peak_8322	chr2	149768556	149769047	+	0	NA	Intergenic	Intergenic	-61982	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding
chipseq_peak_8728	chr3	54155206	54156318	+	0	NA	promoter-TSS (NM_001253682)	promoter-TSS (NM_001253682)	-295	NM_001253682	22066	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding
chipseq_peak_3247	chr12	87333836	87334143	+	0	NA	intron (NM_011479, intron 9 of 11)	MLT1G3|LTR|ERVL-MaLR	-34284	NM_001290302	217738	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2 homolog (zebrafish)	protein-coding
chipseq_peak_6833	chr18	53743878	53745283	+	0	NA	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-33	NM_178686	225523	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding
chipseq_peak_112	chr1	24122299	24122989	+	0	NA	Intergenic	Intergenic	-22303	NM_026604	68187	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding
chipseq_peak_13552	chr9	51581632	51582049	+	0	NA	Intergenic	Intergenic	-183512	NM_175535	244867	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding
chipseq_peak_11690	chr6	97622146	97622560	+	0	NA	Intergenic	Intergenic	-4696	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013	FERM domain containing 4B	protein-coding
chipseq_peak_12390	chr7	96573038	96573352	+	0	NA	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	228354	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA
chipseq_peak_3103	chr12	68758363	68759080	+	0	NA	Intergenic	Intergenic	400465	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding
chipseq_peak_13238	chr8	122552605	122552918	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-1432	NM_001037298	234839	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding
chipseq_peak_3078	chr12	66092909	66093502	+	0	NA	Intergenic	Intergenic	191196	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding
chipseq_peak_4018	chr13	108114263	108114759	+	0	NA	intron (NM_001127346, intron 1 of 3)	intron (NM_001127346, intron 1 of 3)	44114	NM_001127346	75597	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding
chipseq_peak_836	chr1	137941484	137943664	+	0	NA	Intergenic	Intergenic	-23881	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA
chipseq_peak_4550	chr14	93675309	93676665	+	0	NA	intron (NM_001081377, intron 1 of 3)	intron (NM_001081377, intron 1 of 3)	212901	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_10292	chr5	13629009	13629371	+	0	NA	Intergenic	Intergenic	-162429	NM_027650	71026	Mm.158536	NM_027650	ENSMUSG00000067855	Speer3	4933405P08Rik|SPEER-3	spermatogenesis associated glutamate (E)-rich protein 3	protein-coding
chipseq_peak_13714	chr9	83062185	83062493	+	0	NA	Intergenic	(TTA)n|Simple_repeat|Simple_repeat	84268	NM_026122	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding
chipseq_peak_1667	chr10	68333961	68334505	+	0	NA	Intergenic	L3|LINE|CR1	-13091	NR_045357	75148	Mm.23505	NR_045357		4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA
chipseq_peak_7677	chr2	48627112	48627395	+	0	NA	Intergenic	Intergenic	-186856	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_71	chr1	18852985	18853454	+	0	NA	Intergenic	Intergenic	-249803	NM_153154	226896	Mm.244858	NM_153154	ENSMUSG00000042596	Tfap2d	Tcfap2d	transcription factor AP-2, delta	protein-coding
chipseq_peak_760	chr1	125607583	125607909	+	0	NA	Intergenic	Intergenic	46730	NM_028787	74150	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding
chipseq_peak_10093	chr4	103828475	103828983	+	0	NA	Intergenic	Intergenic	446229	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA
chipseq_peak_1698	chr10	71426650	71427337	+	0	NA	Intergenic	Intergenic	79200	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding
chipseq_peak_2503	chr11	90812428	90813279	+	0	NA	intron (NR_045956, intron 1 of 2)	Tigger19a|DNA|TcMar-Tigger	8162	NR_045956	73922	Mm.233289	NR_045956	ENSMUSG00000085940	4930405D11Rik	-	RIKEN cDNA 4930405D11 gene	ncRNA
chipseq_peak_266	chr1	41651928	41653418	+	0	NA	Intergenic	Intergenic	-471421	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_6409	chr17	70933476	70934413	+	0	NA	Intergenic	Intergenic	56572	NM_023402	67938	Mm.261329	NM_023402		Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding
chipseq_peak_2209	chr11	25999888	26000270	+	0	NA	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-202161	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
chipseq_peak_12340	chr7	91667385	91667917	+	0	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-394743	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_2475	chr11	86416806	86417387	+	0	NA	intron (NR_030571, intron 1 of 2)	intron (NR_030571, intron 1 of 2)	1252	NR_030571	100124487		NR_030571	ENSMUSG00000077049	Mir467c	Mirn467c	microRNA 467c	ncRNA
chipseq_peak_4131	chr14	8867570	8868103	+	0	NA	Intergenic	Intergenic	201446	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA
chipseq_peak_9301	chr3	141594445	141594952	+	0	NA	intron (NM_001293561, intron 1 of 16)	L3|LINE|CR1	129134	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 homolog C (C. elegans)	protein-coding
chipseq_peak_9071	chr3	108358519	108359159	+	0	NA	3' UTR (NM_001271599, exon 21 of 21)	3' UTR (NM_001271599, exon 21 of 21)	-6072	NM_026831	68753	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding
chipseq_peak_9448	chr4	5327198	5327755	+	0	NA	Intergenic	Intergenic	-304852	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA
chipseq_peak_2640	chr12	5921039	5921939	+	0	NA	Intergenic	Intergenic	544987	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA
chipseq_peak_14135	chrX	165264865	165265521	+	0	NA	intron (NM_183427, intron 4 of 8)	intron (NM_183427, intron 4 of 8)	61788	NM_183427	237213	Mm.113877	NM_183427	ENSMUSG00000018589	Glra2	-	glycine receptor, alpha 2 subunit	protein-coding
chipseq_peak_3976	chr13	102939892	102940339	+	0	NA	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	179860	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA
chipseq_peak_9901	chr4	74890935	74891860	+	0	NA	Intergenic	Intergenic	386889	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_173	chr1	31448081	31449854	+	0	NA	Intergenic	Intergenic	184120	NR_015347	226957	Mm.25966	NR_015347		Gm4850	EG226957	THO complex 4 pseudogene	pseudo
chipseq_peak_3974	chr13	102866032	102866628	+	0	NA	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	106075	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA
chipseq_peak_9363	chr3	149862542	149863118	+	0	NA	Intergenic	Intergenic	588093	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
chipseq_peak_11239	chr6	17842500	17843065	+	0	NA	intron (NM_001289625, intron 3 of 15)	intron (NM_001289625, intron 3 of 15)	93612	NM_001083315	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
chipseq_peak_11124	chr5	149716265	149717246	+	0	NA	intron (NM_001081204, intron 4 of 14)	intron (NM_001081204, intron 4 of 14)	38498	NM_001081204	381694	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding
chipseq_peak_12909	chr8	57892182	57892414	+	0	NA	intron (NM_175032, intron 6 of 11)	intron (NM_175032, intron 6 of 11)	-239243	NM_001167981	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
chipseq_peak_5886	chr16	67554930	67556816	+	0	NA	intron (NM_178721, intron 1 of 9)	Lx9|LINE|L1	65035	NM_001145977	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_1670	chr10	68419672	68420854	+	0	NA	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-99121	NR_045357	75148	Mm.23505	NR_045357		4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA
chipseq_peak_8456	chr3	10891073	10892703	+	0	NA	Intergenic	Intergenic	-451758	NM_001127191	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding
chipseq_peak_14064	chrX	110349923	110350840	+	0	NA	Intergenic	Intergenic	-22372	NR_033597	634340	Mm.66709	NR_033597	ENSMUSG00000082853	Gm7134	EG634340	kinesin family member 18B pseudogene	pseudo
chipseq_peak_10638	chr5	71381388	71381810	+	0	NA	Intergenic	Intergenic	166606	NM_030052	78174	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding
chipseq_peak_11853	chr6	111664588	111665103	+	0	NA	Intergenic	Intergenic	-545863	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA
chipseq_peak_3003	chr12	54822757	54823350	+	0	NA	Intergenic	Intergenic	-27391	NM_026998	72183	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding
chipseq_peak_9235	chr3	132269477	132270312	+	0	NA	Intergenic	Intergenic	184602	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf homolog 2 (Xenopus laevis)	protein-coding
chipseq_peak_12251	chr7	77205680	77206027	+	0	NA	Intergenic	L1ME2z|LINE|L1	975966	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_8467	chr3	13713136	13715076	+	0	NA	intron (NM_178631, intron 2 of 9)	intron (NM_178631, intron 2 of 9)	-61241	NR_040598	75203	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA
chipseq_peak_7103	chr19	18873245	18874078	+	0	NA	intron (NM_153417, intron 32 of 38)	intron (NM_153417, intron 32 of 38)	123678	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding
chipseq_peak_259	chr1	41313014	41313343	+	0	NA	Intergenic	L1MA4|LINE|L1	-131926	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_6577	chr18	11814552	11814879	+	0	NA	Intergenic	Intergenic	-24559	NM_022021	63955	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding
chipseq_peak_3907	chr13	94367438	94368683	+	0	NA	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	9100	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding
chipseq_peak_4120	chr13	118570746	118571162	+	0	NA	intron (NR_045982, intron 2 of 3)	intron (NR_045982, intron 2 of 3)	14786	NR_045982	75890	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA
chipseq_peak_13428	chr9	31598305	31599091	+	0	NA	Intergenic	L1MC2|LINE|L1	-134460	NM_144936	235135	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding
chipseq_peak_4541	chr14	93055823	93056657	+	0	NA	intron (NM_001271800, intron 2 of 2)	MLT2C1|LTR|ERVL	832648	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_1621	chr10	64146407	64146767	+	0	NA	intron (NM_001164376, intron 7 of 17)	intron (NM_001164376, intron 7 of 17)	-56332	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
chipseq_peak_3109	chr12	69268236	69268671	+	0	NA	intron (NM_178253, intron 11 of 12)	intron (NM_178253, intron 11 of 12)	26621	NM_178253	271005	Mm.180969	NM_178253		Klhdc1	-	kelch domain containing 1	protein-coding
chipseq_peak_7732	chr2	55817186	55818532	+	0	NA	Intergenic	Intergenic	381889	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
chipseq_peak_10695	chr5	77898655	77899209	+	0	NA	Intergenic	Intergenic	433444	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
chipseq_peak_4135	chr14	9648390	9648873	+	0	NA	intron (NM_001308286, intron 5 of 6)	intron (NM_001308286, intron 5 of 6)	-235464	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo
chipseq_peak_3592	chr13	45932429	45933440	+	0	NA	intron (NM_009124, intron 2 of 7)	intron (NM_009124, intron 2 of 7)	32057	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding
chipseq_peak_13161	chr8	106074197	106075571	+	0	NA	intron (NM_010901, intron 1 of 9)	B1F2|SINE|Alu	15281	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding
chipseq_peak_1692	chr10	70532370	70532707	+	0	NA	intron (NM_024244, intron 6 of 13)	intron (NM_024244, intron 6 of 13)	60274	NM_001162846	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding
chipseq_peak_7651	chr2	45044592	45045231	+	0	NA	intron (NM_001289521, intron 1 of 8)	intron (NM_001289521, intron 1 of 8)	-21734	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA
chipseq_peak_3606	chr13	46434147	46435205	+	0	NA	Intergenic	L1MA6|LINE|L1	16376	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding
chipseq_peak_1931	chr10	106507806	106509767	+	0	NA	intron (NM_001205341, intron 2 of 31)	intron (NM_001205341, intron 2 of 31)	38476	NM_177373	327814	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding
chipseq_peak_9253	chr3	134629718	134630179	+	0	NA	Intergenic	Intergenic	-199059	NM_021382	21338	Mm.103810	NM_021382	ENSMUSG00000028172	Tacr3	Nk3r|Nkr|Tac3r	tachykinin receptor 3	protein-coding
chipseq_peak_9653	chr4	27936809	27937680	+	0	NA	Intergenic	Intergenic	-875887	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_2252	chr11	36674917	36675251	+	0	NA	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	269157	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
chipseq_peak_9033	chr3	100872691	100872968	+	0	NA	intron (NM_178594, intron 1 of 5)	L1_Mur3|LINE|L1	47370	NM_178594	242122	Mm.137467	NM_178594	ENSMUSG00000051076	Vtcn1	B7h4|B7s1|B7x|BC032925	V-set domain containing T cell activation inhibitor 1	protein-coding
chipseq_peak_2081	chr10	125028463	125029898	+	0	NA	Intergenic	Intergenic	299355	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
chipseq_peak_2996	chr12	53040438	53040993	+	0	NA	intron (NM_198111, intron 9 of 13)	intron (NM_198111, intron 9 of 13)	-207962	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding
chipseq_peak_2227	chr11	26906549	26907950	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	122141	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_6381	chr17	68163583	68163908	+	0	NA	Intergenic	Intergenic	-110052	NM_177278	320858	Mm.137356	NM_177278		L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding
chipseq_peak_6237	chr17	32262885	32264022	+	0	NA	intron (NM_020508, intron 1 of 19)	B2_Mm1t|SINE|B2	20670	NM_198094	57261	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding
chipseq_peak_6147	chr17	3495616	3496027	+	0	NA	intron (NM_001286757, intron 1 of 12)	intron (NM_001286757, intron 1 of 12)	12331	NM_001286757	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
chipseq_peak_5523	chr16	20628617	20629505	+	0	NA	promoter-TSS (NM_177942)	promoter-TSS (NM_177942)	-790	NM_177942	107522	Mm.263319	NM_025462	ENSMUSG00000022842	Ece2	1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2	endothelin converting enzyme 2	protein-coding
chipseq_peak_6769	chr18	41683663	41684327	+	0	NA	Intergenic	Intergenic	267199	NM_029942	77619	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding
chipseq_peak_10803	chr5	96394954	96395735	+	0	NA	intron (NM_175473, intron 2 of 73)	(TATATG)n|Simple_repeat|Simple_repeat	21389	NM_175473	231470	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser syndrome 1 homolog (human)	protein-coding
chipseq_peak_3030	chr12	59117188	59117804	+	0	NA	Intergenic	Intergenic	-12250	NM_146034	217615	Mm.244118	NM_146034	ENSMUSG00000021000	Ctage5	D12Bwg0579e|Mea6|Mgea|Mgea6	CTAGE family, member 5	protein-coding
chipseq_peak_2009	chr10	114578963	114579261	+	0	NA	intron (NM_146241, intron 5 of 18)	intron (NM_146241, intron 5 of 18)	222258	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding
chipseq_peak_6976	chr18	69506400	69508122	+	0	NA	intron (NM_001083967, intron 5 of 19)	intron (NM_001083967, intron 5 of 19)	161540	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
chipseq_peak_11286	chr6	23909493	23910683	+	0	NA	Intergenic	Intergenic	59972	NM_207022	387347	Mm.377909	NM_207022	ENSMUSG00000043865	Tas2r118	Gm465|T2R18|Tas2r16|Tas2r18|mGR18|mt2r40	taste receptor, type 2, member 118	protein-coding
chipseq_peak_14090	chrX	140749213	140749610	+	0	NA	intron (NM_011845, intron 4 of 8)	intron (NM_011845, intron 4 of 8)	64022	NM_031381	83555	Mm.193025	NM_031381	ENSMUSG00000042386	Tex13	4933403J23Rik|Tex13b	testis expressed gene 13	protein-coding
chipseq_peak_13108	chr8	97778518	97778902	+	0	NA	Intergenic	Intergenic	-1232737	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_9899	chr4	74553921	74554301	+	0	NA	Intergenic	Intergenic	302232	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding
chipseq_peak_6115	chr16	93182612	93182965	+	0	NA	Intergenic	Intergenic	170401	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA
chipseq_peak_2889	chr12	41417803	41418344	+	0	NA	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	67984	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_13784	chr9	96932769	96933302	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-43561	NM_153420	235534	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding
chipseq_peak_9792	chr4	51545309	51546031	+	0	NA	Intergenic	Intergenic	328992	NM_001162865	74914	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding
chipseq_peak_1564	chr10	52814530	52815149	+	0	NA	intron (NM_178675, intron 1 of 7)	intron (NM_178675, intron 1 of 7)	124338	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
chipseq_peak_7906	chr2	76430451	76431164	+	0	NA	intron (NM_145525, intron 1 of 26)	intron (NM_145525, intron 1 of 26)	24299	NM_145525	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding
chipseq_peak_12322	chr7	91208073	91209599	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	118050	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_10558	chr5	61393677	61394085	+	0	NA	Intergenic	Intergenic	-414962	NM_019468	14380	Mm.347430	NM_019468		G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding
chipseq_peak_11746	chr6	101877049	101877420	+	0	NA	Intergenic	LTR37A|LTR|ERV1	102985	NR_027989	207157	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157|ENSMUSG00000052236	predicted gene 9871	ncRNA
chipseq_peak_14082	chrX	137923474	137923786	+	0	NA	intron (NM_030688, intron 2 of 10)	B3|SINE|B2	285950	NM_026469	67944	Mm.443280	NM_026469	ENSMUSG00000071686	Tex13a	1700025D03Rik	testis expressed 13A	protein-coding
chipseq_peak_7769	chr2	58585261	58587721	+	0	NA	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	19157	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
chipseq_peak_13295	chr9	9735450	9735739	+	0	NA	intron (NM_001170787, intron 18 of 24)	intron (NM_001170787, intron 18 of 24)	-158837	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA
chipseq_peak_11763	chr6	103354818	103356001	+	0	NA	Intergenic	Intergenic	-155467	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_672	chr1	104049041	104049581	+	0	NA	Intergenic	Intergenic	-719508	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
chipseq_peak_10621	chr5	68002191	68002985	+	0	NA	Intergenic	Intergenic	-29247	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding
chipseq_peak_7649	chr2	45032346	45032667	+	0	NA	intron (NM_001289521, intron 1 of 8)	intron (NM_001289521, intron 1 of 8)	-9329	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA
chipseq_peak_9503	chr4	12537809	12539711	+	0	NA	Intergenic	Intergenic	-366745	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
chipseq_peak_11625	chr6	80625565	80626185	+	0	NA	intron (NM_001134743, intron 2 of 2)	intron (NM_001134743, intron 2 of 2)	606232	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding
chipseq_peak_5910	chr16	70568579	70569284	+	0	NA	intron (NM_028803, intron 15 of 15)	intron (NM_028803, intron 15 of 15)	-47494	NR_040474	52645	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA
chipseq_peak_1391	chr10	27630709	27631689	+	0	NA	Intergenic	Intergenic	-14257	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding
chipseq_peak_9379	chr3	151210575	151211633	+	0	NA	Intergenic	Intergenic	-226778	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_13193	chr8	112268465	112269301	+	0	NA	Intergenic	Intergenic	257524	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding
chipseq_peak_12878	chr8	54863636	54865509	+	0	NA	intron (NM_001253754, intron 1 of 6)	intron (NM_001253754, intron 1 of 6)	85138	NM_001253754	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_7328	chr19	57850151	57850917	+	0	NA	intron (NM_181415, intron 26 of 28)	intron (NM_181415, intron 26 of 28)	-200633	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA
chipseq_peak_5496	chr16	9452033	9452392	+	0	NA	Intergenic	Intergenic	540321	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding
chipseq_peak_8849	chr3	68759257	68759936	+	0	NA	Intergenic	Intergenic	68172	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding
chipseq_peak_2115	chr11	5165404	5166142	+	0	NA	Intergenic	Intergenic	-13551	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding
chipseq_peak_11737	chr6	101352686	101353099	+	0	NA	intron (NM_018884, intron 3 of 9)	intron (NM_018884, intron 3 of 9)	25005	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
chipseq_peak_9116	chr3	117375100	117375907	+	0	NA	Intergenic	Intergenic	-14627	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding
chipseq_peak_3575	chr13	44098802	44101025	+	0	NA	Intergenic	Intergenic	-21254	NR_045285	328235	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA
chipseq_peak_3956	chr13	101019148	101019808	+	0	NA	Intergenic	Intergenic	-186051	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding
chipseq_peak_3120	chr12	70130574	70131553	+	0	NA	Intergenic	Intergenic	-19028	NM_001286079	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding
chipseq_peak_10700	chr5	78993134	78993745	+	0	NA	intron (NR_035474, intron 3 of 4)	intron (NR_035474, intron 3 of 4)	522465	NR_035474	100316701		NR_035474	ENSMUSG00000089570	Mir669m-1	mmu-mir-669m-1	microRNA 669m-1	ncRNA
chipseq_peak_1215	chr1	194148567	194149569	+	0	NA	Intergenic	Intergenic	73691	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
chipseq_peak_10070	chr4	97941544	97942184	+	0	NA	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	164238	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
chipseq_peak_1539	chr10	48646576	48647226	+	0	NA	Intergenic	Intergenic	448942	NR_046212	100418235	Mm.185993	NR_046212		C130030K03Rik	-	proteasome (prosome, macropain) subunit, alpha type 6 pseudogene	pseudo
chipseq_peak_5596	chr16	32942524	32943106	+	0	NA	intron (NM_001310672, intron 1 of 19)	intron (NM_001310672, intron 1 of 19)	28715	NM_001081255	70144	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding
chipseq_peak_10890	chr5	111022067	111023393	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	18586	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_11805	chr6	106425575	106426654	+	0	NA	intron (NM_173004, intron 7 of 19)	intron (NM_173004, intron 7 of 19)	307349	NM_001109751	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding
chipseq_peak_11577	chr6	66532804	66535272	+	0	NA	Intergenic	Intergenic	-1430	NM_019499	56150	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding
chipseq_peak_7147	chr19	23225079	23225337	+	0	NA	intron (NM_001252684, intron 17 of 24)	intron (NM_001252684, intron 17 of 24)	47391	NM_001252685	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding
chipseq_peak_10210	chr4	141955082	141955320	+	0	NA	intron (NM_177868, intron 11 of 31)	intron (NM_177868, intron 11 of 31)	-27791	NR_040672	545691	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037|OTTMUSG00000010113	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA
chipseq_peak_9976	chr4	81695320	81695848	+	0	NA	Intergenic	L1ME1|LINE|L1	-208571	NR_030570	100124446		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA
chipseq_peak_1546	chr10	49784155	49786288	+	0	NA	intron (NM_010349, intron 1 of 17)	intron (NM_010349, intron 1 of 17)	3533	NM_001111268	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding
chipseq_peak_2661	chr12	7216978	7217987	+	0	NA	Intergenic	Intergenic	162848	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_7036	chr18	82962705	82963495	+	0	NA	intron (NM_001177464, intron 2 of 5)	intron (NM_001177464, intron 2 of 5)	-42540	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA
chipseq_peak_10707	chr5	80274501	80276184	+	0	NA	Intergenic	Intergenic	-746251	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_13699	chr9	78175135	78175664	+	0	NA	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	-515	NR_040401	320295	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA
chipseq_peak_7740	chr2	56549948	56551080	+	0	NA	Intergenic	Intergenic	-235297	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
chipseq_peak_12211	chr7	73511612	73512143	+	0	NA	intron (NM_001081345, intron 5 of 38)	intron (NM_001081345, intron 5 of 38)	29869	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding
chipseq_peak_3133	chr12	71581220	71581548	+	0	NA	Intergenic	Intergenic	40777	NR_045941	73815	Mm.416916	NR_045941		4930404H11Rik	-	RIKEN cDNA 4930404H11 gene	ncRNA
chipseq_peak_8374	chr2	165349370	165349725	+	0	NA	Intergenic	Intergenic	12572	NM_001005425	381405	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding
chipseq_peak_7957	chr2	82715752	82716236	+	0	NA	Intergenic	Intergenic	662336	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding
chipseq_peak_1934	chr10	106609004	106609425	+	0	NA	intron (NM_001205341, intron 3 of 31)	intron (NM_001205341, intron 3 of 31)	-6734	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA
chipseq_peak_3309	chr12	98738542	98738927	+	0	NA	Intergenic	Intergenic	-1329	NM_001146199	24000	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding
chipseq_peak_5159	chr15	57302318	57303296	+	0	NA	intron (NM_172378, intron 2 of 11)	intron (NM_172378, intron 2 of 11)	174818	NM_172378	210463	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding
chipseq_peak_170	chr1	31210128	31210860	+	0	NA	intron (NR_033445, intron 1 of 2)	intron (NR_033445, intron 1 of 2)	12162	NR_033445	70988	Mm.161414	NM_027637	ENSMUSG00000086727	4931428L18Rik	4930563O14Rik	RIKEN cDNA 4931428L18 gene	ncRNA
chipseq_peak_12413	chr7	100812235	100813682	+	0	NA	exon (NM_178764, exon 4 of 9)	exon (NM_178764, exon 4 of 9)	50455	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding
chipseq_peak_10894	chr5	111054298	111055846	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	50928	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_4021	chr13	108151799	108152343	+	0	NA	intron (NM_001127346, intron 1 of 3)	intron (NM_001127346, intron 1 of 3)	6554	NM_001127346	75597	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding
chipseq_peak_11540	chr6	58933167	58933918	+	0	NA	TTS (NM_153574)	TTS (NM_153574)	-26416	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding
chipseq_peak_6531	chr17	90850086	90850578	+	0	NA	intron (NM_020252, intron 4 of 22)	intron (NM_020252, intron 4 of 22)	-10837	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_3844	chr13	85863819	85864319	+	0	NA	Intergenic	Intergenic	182726	NM_007749	12867	Mm.378898	NM_007749		Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding
chipseq_peak_8429	chr3	4793137	4793606	+	0	NA	Intergenic	Intergenic	-5337	NR_045272	100503859	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA
chipseq_peak_7000	chr18	72081462	72082273	+	0	NA	intron (NM_007831, intron 1 of 28)	intron (NM_007831, intron 1 of 28)	269202	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
chipseq_peak_3202	chr12	78360603	78361700	+	0	NA	intron (NM_145965, intron 2 of 22)	intron (NM_145965, intron 2 of 22)	134496	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding
chipseq_peak_476	chr1	69437062	69437407	+	0	NA	Intergenic	Intergenic	248726	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding
chipseq_peak_4152	chr14	12923671	12924204	+	0	NA	Intergenic	Intergenic	-100858	NM_012061	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding
chipseq_peak_3927	chr13	97545989	97546445	+	0	NA	Intergenic	Intergenic	-13783	NR_046157	328314	Mm.138047	NR_046157		Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA
chipseq_peak_14051	chrX	90992065	90992402	+	0	NA	Intergenic	Intergenic	100091	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding
chipseq_peak_10782	chr5	89559904	89560220	+	0	NA	intron (NM_133192, intron 1 of 3)	intron (NM_133192, intron 1 of 3)	32633	NM_133192	104443	Mm.447881	NM_133192	ENSMUSG00000035528	Npffr2	Gpr74|HG31|NPFF2	neuropeptide FF receptor 2	protein-coding
chipseq_peak_13351	chr9	23835007	23835624	+	0	NA	Intergenic	Intergenic	-262703	NM_175678	319239	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
chipseq_peak_7854	chr2	66409950	66410505	+	0	NA	intron (NM_001313997, intron 1 of 26)	intron (NM_001313997, intron 1 of 26)	30610	NM_001313997	20265	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding
chipseq_peak_4380	chr14	67291101	67291562	+	0	NA	intron (NM_001276387, intron 7 of 16)	intron (NM_001276387, intron 7 of 16)	23380	NM_001037931	628416	Mm.390723	NM_001037931		Gm6878	EG628416	predicted gene 6878	protein-coding
chipseq_peak_1735	chr10	83064795	83065081	+	0	NA	intron (NM_021439, intron 1 of 2)	L1MA4|LINE|L1	79441	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding
chipseq_peak_10226	chr4	151103437	151103812	+	0	NA	intron (NM_001081557, intron 11 of 23)	intron (NM_001081557, intron 11 of 23)	14054	NM_001308446	105704528	Mm.415128	NM_001308446		Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding
chipseq_peak_1376	chr10	27103654	27104744	+	0	NA	exon (NM_008481, exon 39 of 64)	exon (NM_008481, exon 39 of 64)	-285667	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
chipseq_peak_12559	chr7	135600028	135600411	+	0	NA	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	-5609	NM_001316679	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding
chipseq_peak_4574	chr14	96563265	96564049	+	0	NA	Intergenic	Intergenic	-44623	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
chipseq_peak_1990	chr10	111129852	111130500	+	0	NA	Intergenic	Intergenic	-34626	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding
chipseq_peak_761	chr1	125732890	125733209	+	0	NA	intron (NM_027677, intron 1 of 1)	intron (NM_027677, intron 1 of 1)	56053	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding
chipseq_peak_6053	chr16	79108837	79109721	+	0	NA	Intergenic	Intergenic	-18182	NM_178855	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
chipseq_peak_10780	chr5	89151097	89152225	+	0	NA	intron (NM_001197147, intron 13 of 25)	intron (NM_001197147, intron 13 of 25)	264401	NM_001197147	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding
chipseq_peak_13727	chr9	84786828	84787907	+	0	NA	Intergenic	Intergenic	12969	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA
chipseq_peak_6984	chr18	69820075	69820953	+	0	NA	Intergenic	Intergenic	-105045	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding
chipseq_peak_11741	chr6	101534385	101534945	+	0	NA	Intergenic	Intergenic	-156768	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
chipseq_peak_12748	chr8	37716245	37717028	+	0	NA	intron (NM_145841, intron 3 of 7)	intron (NM_145841, intron 3 of 7)	535566	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA
chipseq_peak_4532	chr14	91463400	91464477	+	0	NA	Intergenic	Intergenic	1337047	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
chipseq_peak_8048	chr2	106318657	106318916	+	0	NA	Intergenic	Intergenic	204317	NR_040637	329483	Mm.246777	NR_040637	ENSMUSG00000087226	Gm14015	9330126M15|OTTMUSG00000015366	predicted gene 14015	ncRNA
chipseq_peak_7185	chr19	28003430	28003841	+	0	NA	intron (NM_011265, intron 1 of 16)	intron (NM_011265, intron 1 of 16)	7531	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding
chipseq_peak_10415	chr5	39777241	39777696	+	0	NA	Intergenic	Intergenic	-132837	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_6832	chr18	53723846	53724346	+	0	NA	intron (NM_178686, intron 8 of 20)	intron (NM_178686, intron 8 of 20)	20451	NM_178686	225523	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding
chipseq_peak_10099	chr4	104257642	104258228	+	0	NA	Intergenic	Intergenic	-109603	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
chipseq_peak_8254	chr2	140664595	140664888	+	0	NA	intron (NM_001172160, intron 1 of 2)	intron (NM_001172160, intron 1 of 2)	6735	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_8695	chr3	51121836	51122225	+	0	NA	Intergenic	Intergenic	-102417	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding
chipseq_peak_3639	chr13	54023192	54023935	+	0	NA	Intergenic	Intergenic	31217	NM_001291801	13488	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding
chipseq_peak_1303	chr10	16514443	16515208	+	0	NA	Intergenic	Intergenic	580957	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA
chipseq_peak_10471	chr5	47034091	47034525	+	0	NA	Intergenic	Intergenic	-948847	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
chipseq_peak_12880	chr8	54875718	54878352	+	0	NA	intron (NM_001253754, intron 1 of 6)	MER2|DNA|TcMar-Tigger	-77693	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_12494	chr7	121567988	121568583	+	0	NA	Intergenic	Intergenic	21551	NR_102286	75793	Mm.23397	NR_102286		4933432K03Rik	1700001C18Rik|4930433G11Rik|AI428127	RIKEN cDNA 4933432K03 gene	ncRNA
chipseq_peak_6411	chr17	71161796	71162224	+	0	NA	Intergenic	Intergenic	-21968	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding
chipseq_peak_4575	chr14	96668019	96669225	+	0	NA	Intergenic	Intergenic	-149588	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
chipseq_peak_2077	chr10	124806285	124806940	+	0	NA	Intergenic	L1_Mur3|LINE|L1	337538	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo
chipseq_peak_4223	chr14	29028826	29029303	+	0	NA	3' UTR (NM_176920, exon 3 of 3)	3' UTR (NM_176920, exon 3 of 3)	10856	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding
chipseq_peak_7374	chr2	6261004	6261811	+	0	NA	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-48413	NM_024208	67856	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding
chipseq_peak_13152	chr8	103885807	103886259	+	0	NA	Intergenic	PB1D10|SINE|Alu	-215592	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding
chipseq_peak_8707	chr3	53230940	53231595	+	0	NA	intron (NM_175386, intron 2 of 3)	intron (NM_175386, intron 2 of 3)	189720	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968	lipoma HMGIC fusion partner	protein-coding
chipseq_peak_11716	chr6	98626296	98626863	+	0	NA	Intergenic	Intergenic	-283825	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_14002	chrX	52934478	52934793	+	0	NA	intron (NM_001290546, intron 3 of 8)	intron (NM_001290546, intron 3 of 8)	22421	NM_001290546	70998	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding
chipseq_peak_13057	chr8	86475795	86476048	+	0	NA	Intergenic	Intergenic	90669	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
chipseq_peak_6830	chr18	52796375	52796979	+	0	NA	intron (NM_001199154, intron 1 of 10)	intron (NM_001199154, intron 1 of 10)	28533	NM_001199154	67847	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding
chipseq_peak_4334	chr14	61172103	61172724	+	0	NA	intron (NM_172809, intron 2 of 9)	intron (NM_172809, intron 2 of 9)	33956	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding
chipseq_peak_974	chr1	160213227	160213944	+	0	NA	promoter-TSS (NM_009786)	promoter-TSS (NM_009786)	-693	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding
chipseq_peak_3400	chr13	6287677	6287999	+	0	NA	Intergenic	Intergenic	-260319	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding
chipseq_peak_5103	chr15	50324567	50324928	+	0	NA	Intergenic	Intergenic	564302	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_1933	chr10	106590579	106591247	+	0	NA	intron (NR_131027, intron 1 of 3)	intron (NR_131027, intron 1 of 3)	10142	NR_131027	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA
chipseq_peak_10177	chr4	127736299	127736604	+	0	NA	Intergenic	Intergenic	234390	NM_001134733	635169	Mm.346755	NM_001134733	ENSMUSG00000028813	CK137956	-	cDNA sequence CK137956	protein-coding
chipseq_peak_710	chr1	111164191	111164427	+	0	NA	Intergenic	Lx2B|LINE|L1	-186937	NM_001081386	227485	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding
chipseq_peak_12026	chr6	148578208	148579267	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	35572	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
chipseq_peak_2101	chr10	126828206	126828753	+	0	NA	Intergenic	L1MA7|LINE|L1	-34769	NR_131015	75813	Mm.159583	NR_131015		4930484H19Rik	-	RIKEN cDNA 4930484H19 gene	ncRNA
chipseq_peak_2008	chr10	114343060	114343560	+	0	NA	Intergenic	L1MA4|LINE|L1	458060	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding
chipseq_peak_11330	chr6	32406452	32406799	+	0	NA	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-104516	NR_040277	319849	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA
chipseq_peak_2723	chr12	15122421	15123468	+	0	NA	Intergenic	Lx8b|LINE|L1	-72555	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
chipseq_peak_116	chr1	24229473	24229871	+	0	NA	intron (NM_001290691, intron 22 of 31)	intron (NM_001290691, intron 22 of 31)	34469	NM_001290691	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding
chipseq_peak_950	chr1	156904857	156905404	+	0	NA	intron (NM_001159965, intron 2 of 19)	intron (NM_001159965, intron 2 of 19)	34257	NM_001159966	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
chipseq_peak_6928	chr18	66159995	66161036	+	0	NA	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	58818	NR_030467	751558		NR_030467	ENSMUSG00000076147	Mir694	Mirn694|mir-694|mmu-mir-694	microRNA 694	ncRNA
chipseq_peak_10609	chr5	66850831	66851303	+	0	NA	intron (NM_001001980, intron 1 of 25)	intron (NM_001001980, intron 1 of 25)	105227	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding
chipseq_peak_11888	chr6	118739740	118740562	+	0	NA	intron (NM_001159533, intron 8 of 46)	intron (NM_001159533, intron 8 of 46)	17823	NM_001290335	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding
chipseq_peak_10250	chr5	5342763	5343184	+	0	NA	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	37278	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding
chipseq_peak_10191	chr4	133343940	133344360	+	0	NA	Intergenic	PB1D7|SINE|Alu	-4835	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding
chipseq_peak_3284	chr12	94320976	94321355	+	0	NA	Intergenic	Intergenic	393827	NR_106175	102465890		NR_106175	ENSMUSG00000098931	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA
chipseq_peak_7331	chr19	58270795	58271059	+	0	NA	intron (NR_104342, intron 6 of 11)	intron (NR_104342, intron 6 of 11)	-25277	NR_040449	791347	Mm.452208	NR_040449		Gm10007	ENSMUSG00000056739	predicted gene 10007	ncRNA
chipseq_peak_2470	chr11	86083593	86084089	+	0	NA	intron (NM_178309, intron 16 of 19)	intron (NM_178309, intron 16 of 19)	-59491	NR_046030	629393	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA
chipseq_peak_6606	chr18	17494919	17495376	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	85843	NR_045374	75162	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA
chipseq_peak_1850	chr10	98933170	98933561	+	0	NA	intron (NM_026482, intron 1 of 20)	Kanga11a|DNA|TcMar-Tc2	18213	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding
chipseq_peak_5512	chr16	12766922	12767155	+	0	NA	Intergenic	Intergenic	-44352	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA
chipseq_peak_11068	chr5	136587340	136587688	+	0	NA	Intergenic	Intergenic	-20024	NM_009986	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding
chipseq_peak_9900	chr4	74587336	74588219	+	0	NA	Intergenic	Intergenic	335898	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding
chipseq_peak_6952	chr18	67707502	67708476	+	0	NA	intron (NM_001127177, intron 2 of 8)	B1F2|SINE|Alu	16632	NM_008977	19255	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding
chipseq_peak_5231	chr15	65597797	65598203	+	0	NA	Intergenic	Intergenic	-189041	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
chipseq_peak_4679	chr14	114261657	114262146	+	0	NA	Intergenic	Intergenic	-570064	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_8634	chr3	40845727	40846832	+	0	NA	promoter-TSS (NR_038067)	promoter-TSS (NR_038067)	575	NM_028140	72175	Mm.130610	NM_028140	ENSMUSG00000025759	Mfsd8	2810423E13Rik|AI836898|AV142426|Cln7	major facilitator superfamily domain containing 8	protein-coding
chipseq_peak_10534	chr5	57397721	57398450	+	0	NA	Intergenic	Intergenic	319834	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
chipseq_peak_214	chr1	35180762	35181892	+	0	NA	Intergenic	Lx8b|LINE|L1	331368	NM_175421	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding
chipseq_peak_2195	chr11	25179274	25180224	+	0	NA	Intergenic	Intergenic	-146358	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_2157	chr11	16597004	16597465	+	0	NA	Intergenic	Intergenic	-88750	NM_011343	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding
chipseq_peak_8461	chr3	13191769	13192747	+	0	NA	Intergenic	Intergenic	-279397	NM_178631	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding
chipseq_peak_13989	chrX	47290623	47291005	+	0	NA	Intergenic	L3|LINE|CR1	601738	NM_053123	93761	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
chipseq_peak_58	chr1	17762633	17763313	+	0	NA	intron (NM_031402, intron 14 of 14)	intron (NM_031402, intron 14 of 14)	-35327	NR_130314	102634913	Mm.319094	NR_130314	ENSMUSG00000085125	Gm16070	OTTMUSG00000029756	predicted gene 16070	ncRNA
chipseq_peak_6975	chr18	69499254	69501567	+	0	NA	intron (NM_001083967, intron 5 of 19)	intron (NM_001083967, intron 5 of 19)	154689	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
chipseq_peak_13446	chr9	34711964	34713600	+	0	NA	intron (NM_001190912, intron 1 of 15)	intron (NM_001190912, intron 1 of 15)	224051	NM_001190912	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding
chipseq_peak_2875	chr12	39493176	39494135	+	0	NA	Intergenic	Intergenic	543721	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
chipseq_peak_3271	chr12	92975194	92976103	+	0	NA	Intergenic	Intergenic	469175	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA
chipseq_peak_1916	chr10	105796622	105797807	+	0	NA	intron (NM_207522, intron 6 of 11)	intron (NM_207522, intron 6 of 11)	44166	NM_207522	216292	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding
chipseq_peak_3620	chr13	48176811	48177237	+	0	NA	intron (NR_102303, intron 1 of 2)	intron (NR_102303, intron 1 of 2)	-84403	NM_031166	15904	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding
chipseq_peak_2637	chr12	5301822	5302174	+	0	NA	intron (NM_001164493, intron 1 of 13)	intron (NM_001164493, intron 1 of 13)	73684	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding
chipseq_peak_9573	chr4	18958453	18960140	+	0	NA	Intergenic	Intergenic	-321554	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding
chipseq_peak_1335	chr10	21382780	21383403	+	0	NA	intron (NM_178713, intron 3 of 6)	intron (NM_178713, intron 3 of 6)	5791	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding
chipseq_peak_1823	chr10	95756411	95756953	+	0	NA	Intergenic	L1M5|LINE|L1	-183981	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding
chipseq_peak_12450	chr7	113637977	113638877	+	0	NA	Intergenic	Intergenic	-73440	NR_126544	69295	Mm.396150	NR_126544		Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA
chipseq_peak_9142	chr3	118247865	118249197	+	0	NA	Intergenic	Intergenic	-185326	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA
chipseq_peak_3046	chr12	61212179	61213325	+	0	NA	Intergenic	Lx6|LINE|L1	309068	NR_045049	100504101	Mm.235026	NR_045049		Gm20063	-	predicted gene, 20063	ncRNA
chipseq_peak_1141	chr1	180536029	180536543	+	0	NA	Intergenic	Intergenic	-32689	NM_007415	11545	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding
chipseq_peak_8833	chr3	68095117	68095541	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	30527	NM_001113421	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_11884	chr6	117613741	117614236	+	0	NA	Intergenic	Intergenic	137781	NR_045731	72263	Mm.443289	NR_045731	ENSMUSG00000099869	1700030F04Rik	-	RIKEN cDNA 1700030F04 gene	ncRNA
chipseq_peak_12600	chr8	7738692	7739040	+	0	NA	Intergenic	Lx6|LINE|L1	921907	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_10133	chr4	111181330	111181822	+	0	NA	intron (NM_030231, intron 5 of 12)	intron (NM_030231, intron 5 of 12)	-233430	NM_026279	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding
chipseq_peak_8703	chr3	52782605	52783034	+	0	NA	Intergenic	Intergenic	43095	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA
chipseq_peak_4042	chr13	109660555	109661878	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-242593	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
chipseq_peak_2006	chr10	114093883	114094698	+	0	NA	Intergenic	Intergenic	507712	NR_035418	100316831		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA
chipseq_peak_13416	chr9	30008271	30008897	+	0	NA	Intergenic	Intergenic	-45455	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_6179	chr17	10097718	10098007	+	0	NA	Intergenic	Intergenic	221499	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding
chipseq_peak_5316	chr15	72906001	72906298	+	0	NA	intron (NM_001164641, intron 16 of 17)	intron (NM_001164641, intron 16 of 17)	-95825	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA
chipseq_peak_4675	chr14	113930619	113931645	+	0	NA	Intergenic	Intergenic	-900833	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_4616	chr14	105676034	105676691	+	0	NA	Intergenic	Intergenic	-52592	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
chipseq_peak_2232	chr11	28899433	28899807	+	0	NA	intron (NM_146015, intron 4 of 10)	intron (NM_146015, intron 4 of 10)	46415	NM_146015	216616	Mm.44176	NM_146015	ENSMUSG00000020467	Efemp1	-	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	protein-coding
chipseq_peak_3178	chr12	75086659	75088091	+	0	NA	intron (NM_172805, intron 7 of 10)	intron (NM_172805, intron 7 of 10)	89957	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding
chipseq_peak_11343	chr6	33194896	33195235	+	0	NA	Intergenic	L1ME1|LINE|L1	-54085	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
chipseq_peak_10262	chr5	7607493	7608397	+	0	NA	Intergenic	Intergenic	-263567	NM_001163223	207618	Mm.478808	NM_001163223	ENSMUSG00000092094	Zfp804b	Gm441	zinc finger protein 804B	protein-coding
chipseq_peak_7091	chr19	14701140	14701619	+	0	NA	Intergenic	Intergenic	-103196	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_2010	chr10	114642407	114644496	+	0	NA	intron (NM_146241, intron 3 of 18)	L1MB8|LINE|L1	157919	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding
chipseq_peak_8844	chr3	68322418	68323740	+	0	NA	intron (NM_001113420, intron 1 of 6)	B4A|SINE|B4	-145104	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_4028	chr13	109233959	109234280	+	0	NA	intron (NM_011056, intron 3 of 16)	B4A|SINE|B4	-90625	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_7227	chr19	34550243	34551229	+	0	NA	promoter-TSS (NM_008332)	promoter-TSS (NM_008332)	42	NM_008332	15958	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding
chipseq_peak_6255	chr17	44631320	44631865	+	0	NA	intron (NR_073392, intron 6 of 7)	intron (NR_073392, intron 6 of 7)	104584	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding
chipseq_peak_12034	chr7	16930866	16931340	+	0	NA	Intergenic	Intergenic	-7071	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding
chipseq_peak_8089	chr2	112748524	112748941	+	0	NA	intron (NM_177652, intron 60 of 103)	intron (NM_177652, intron 60 of 103)	189050	NM_001165935	74268	Mm.315125	NM_028844		Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding
chipseq_peak_8411	chr2	172412226	172412497	+	0	NA	intron (NM_001276422, intron 1 of 5)	(TTAA)n|Simple_repeat|Simple_repeat	18567	NM_001276422	320664	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding
chipseq_peak_8800	chr3	63145988	63146893	+	0	NA	Intergenic	Intergenic	-148995	NM_001289462	17380	Mm.296022	NM_008604		Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding
chipseq_peak_126	chr1	25163145	25163990	+	0	NA	intron (NM_175642, intron 19 of 30)	intron (NM_175642, intron 19 of 30)	114387	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
chipseq_peak_2926	chr12	46417143	46417935	+	0	NA	Intergenic	Intergenic	401236	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
chipseq_peak_11486	chr6	50399855	50400303	+	0	NA	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	-17242	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
chipseq_peak_3522	chr13	29826441	29827786	+	0	NA	intron (NM_001308486, intron 4 of 5)	intron (NM_001308486, intron 4 of 5)	28560	NM_144536	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
chipseq_peak_12661	chr8	16290219	16291122	+	0	NA	intron (NM_053171, intron 10 of 69)	(TAGA)n|Simple_repeat|Simple_repeat	-121832	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
chipseq_peak_13633	chr9	61714089	61714705	+	0	NA	Intergenic	Intergenic	200113	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding
chipseq_peak_2257	chr11	36988747	36989532	+	0	NA	Intergenic	Intergenic	-44898	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
chipseq_peak_10958	chr5	120365970	120366334	+	0	NA	Intergenic	Intergenic	-65734	NM_008499	16873	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding
chipseq_peak_6978	chr18	69589626	69591926	+	0	NA	intron (NM_001083967, intron 8 of 19)	intron (NM_001083967, intron 8 of 19)	245055	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
chipseq_peak_5559	chr16	26314842	26315200	+	0	NA	Intergenic	Intergenic	56818	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding
chipseq_peak_6322	chr17	55561462	55562333	+	0	NA	Intergenic	Intergenic	62775	NM_001104582	383258	Mm.461682	NM_001104582	ENSMUSG00000091504	Vmn2r118	EG383258|EG668547|Vmn2r119	vomeronasal 2, receptor 118	protein-coding
chipseq_peak_11285	chr6	23824043	23825184	+	0	NA	intron (NM_001252109, intron 1 of 4)	Lx9|LINE|L1	14808	NM_001252105	320405	Mm.259632	NM_153163	ENSMUSG00000017978	Cadps2	A230044C21Rik|Caps-2|Caps2|Cpd2	Ca2+-dependent activator protein for secretion 2	protein-coding
chipseq_peak_8513	chr3	21292846	21293794	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-783332	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
chipseq_peak_13943	chr9	120435761	120436311	+	0	NA	intron (NM_144557, intron 10 of 16)	intron (NM_144557, intron 10 of 16)	-56570	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding
chipseq_peak_11320	chr6	30372984	30373316	+	0	NA	intron (NM_001311086, intron 7 of 9)	intron (NM_001311086, intron 7 of 9)	17860	NM_172735	232679	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding
chipseq_peak_2990	chr12	52603802	52605305	+	0	NA	Intergenic	U6|snRNA|snRNA	-2231	NR_045910	73278	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA
chipseq_peak_14078	chrX	135757992	135758950	+	0	NA	intron (NM_001005385, intron 5 of 9)	L1M3f|LINE|L1	11755	NR_106104	102465755		NR_106104	ENSMUSG00000106264	Mir7646	mmu-mir-7646	microRNA mir-7646	ncRNA
chipseq_peak_10126	chr4	109122409	109122869	+	0	NA	intron (NM_133885, intron 4 of 22)	intron (NM_133885, intron 4 of 22)	-4603	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding
chipseq_peak_9935	chr4	77992664	77993145	+	0	NA	intron (NM_011211, intron 1 of 39)	intron (NM_011211, intron 1 of 39)	218991	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_3169	chr12	74549388	74549926	+	0	NA	Intergenic	Intergenic	252183	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding
chipseq_peak_12004	chr6	145445299	145446290	+	0	NA	Intergenic	Intergenic	-10869	NM_028742	74071	Mm.441497	NM_028742	ENSMUSG00000054966	Ifltd1	4933403M22Rik|AI482300|Lmna-rs1|Lmna1|Lmntd1	intermediate filament tail domain containing 1	protein-coding
chipseq_peak_10077	chr4	101070765	101071425	+	0	NA	intron (NM_183024, intron 1 of 11)	intron (NM_183024, intron 1 of 11)	2057	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding
chipseq_peak_2254	chr11	36758037	36758357	+	0	NA	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	186044	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
chipseq_peak_5107	chr15	50832905	50833318	+	0	NA	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	55938	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_247	chr1	40627793	40629233	+	0	NA	intron (NM_177084, intron 11 of 11)	intron (NM_177084, intron 11 of 11)	48286	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding
chipseq_peak_9666	chr4	30226902	30227724	+	0	NA	Intergenic	Tigger9b|DNA|TcMar-Tigger	-437283	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
chipseq_peak_3814	chr13	83871477	83873415	+	0	NA	Intergenic	Intergenic	-18762	NR_036594	72677	Mm.245636	NR_036594	ENSMUSG00000100891	2810049E08Rik	-	RIKEN cDNA 2810049E08 gene	ncRNA
chipseq_peak_1712	chr10	73622313	73622868	+	0	NA	Intergenic	Intergenic	-199277	NM_001142747	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
chipseq_peak_7687	chr2	49922933	49925047	+	0	NA	intron (NM_027990, intron 4 of 9)	intron (NM_027990, intron 4 of 9)	136304	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding
chipseq_peak_13531	chr9	49621621	49624658	+	0	NA	intron (NM_001113204, intron 1 of 18)	intron (NM_001113204, intron 1 of 18)	104851	NR_029465	100036537	Mm.437541	NR_029465		Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA
chipseq_peak_11818	chr6	108004825	108005101	+	0	NA	Intergenic	Intergenic	-60082	NM_178391	74729	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding
chipseq_peak_11351	chr6	33542270	33543635	+	0	NA	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	293802	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
chipseq_peak_4137	chr14	10531635	10532142	+	0	NA	intron (NM_001308285, intron 4 of 9)	RLTR49|LTR|ERVK	-78430	NM_001308286	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding
chipseq_peak_13421	chr9	30233656	30233959	+	0	NA	Intergenic	Intergenic	-193522	NM_028874	102607	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding
chipseq_peak_11155	chr6	8719723	8720072	+	0	NA	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	38561	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding
chipseq_peak_11963	chr6	140152549	140153182	+	0	NA	Intergenic	Intergenic	111340	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding
chipseq_peak_12627	chr8	10342952	10343519	+	0	NA	intron (NM_001081397, intron 4 of 35)	intron (NM_001081397, intron 4 of 35)	189312	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
chipseq_peak_8563	chr3	29136367	29136729	+	0	NA	intron (NM_001167748, intron 1 of 12)	intron (NM_001167748, intron 1 of 12)	53971	NM_001167748	75740	Mm.330948	NM_029412	ENSMUSG00000063600	Egfem1	6130401L20Rik|Efcab11	EGF-like and EMI domain containing 1	protein-coding
chipseq_peak_12468	chr7	117170035	117170511	+	0	NA	Intergenic	Intergenic	-210706	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_8665	chr3	47090487	47091137	+	0	NA	Intergenic	Intergenic	-190030	NR_105800	102465199		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA
chipseq_peak_10326	chr5	16967211	16968169	+	0	NA	Intergenic	Intergenic	413789	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
chipseq_peak_8012	chr2	98286656	98287775	+	0	NA	Intergenic	Intergenic	819558	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_7491	chr2	18473411	18473754	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-80752	NM_007869	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ (Hsp40) homolog, subfamily C, member 1	protein-coding
chipseq_peak_4001	chr13	107187187	107187987	+	0	NA	Intergenic	Intergenic	165017	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA
chipseq_peak_6652	chr18	23338813	23339284	+	0	NA	intron (NM_001285813, intron 1 of 21)	intron (NM_001285813, intron 1 of 21)	29028	NM_001285813	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding
chipseq_peak_13439	chr9	33530399	33531159	+	0	NA	Intergenic	Intergenic	-511592	NR_040744	77119	Mm.367930	NR_040744	ENSMUSG00000098758	7630403G23Rik	-	RIKEN cDNA 7630403G23 gene	ncRNA
chipseq_peak_8531	chr3	25426816	25427422	+	0	NA	Intergenic	Intergenic	726188	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
chipseq_peak_10137	chr4	117189547	117190466	+	0	NA	Intergenic	U5|snRNA|snRNA	-7382	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding
chipseq_peak_13067	chr8	89514189	89514656	+	0	NA	Intergenic	Intergenic	-470260	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding
chipseq_peak_6414	chr17	72043323	72044100	+	0	NA	intron (NM_007439, intron 5 of 28)	MIRb|SINE|MIR	261764	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding
chipseq_peak_1452	chr10	36526653	36526953	+	0	NA	intron (NM_001253356, intron 1 of 4)	intron (NM_001253356, intron 1 of 4)	19996	NM_001081208	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
chipseq_peak_13426	chr9	31252825	31253197	+	0	NA	Intergenic	Intergenic	-18390	NM_001101597	638580	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding
chipseq_peak_6325	chr17	57801142	57801659	+	0	NA	intron (NM_001081653, intron 1 of 23)	intron (NM_001081653, intron 1 of 23)	31830	NM_001081653	620292	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding
chipseq_peak_13261	chr8	127690531	127691146	+	0	NA	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	391186	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_8350	chr2	158888504	158888899	+	0	NA	Intergenic	L2b|LINE|L2	93894	NM_001291144	71715	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding
chipseq_peak_8357	chr2	161362343	161362691	+	0	NA	Intergenic	Intergenic	-253431	NM_173368	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
chipseq_peak_13720	chr9	83657531	83657905	+	0	NA	Intergenic	Intergenic	-33757	NR_046066	100039222	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA
chipseq_peak_4446	chr14	78955883	78957017	+	0	NA	intron (NM_173758, intron 12 of 25)	intron (NM_173758, intron 12 of 25)	107272	NM_173758	219189	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding
chipseq_peak_6031	chr16	77536100	77537979	+	0	NA	intron (NR_015543, intron 4 of 4)	intron (NR_015543, intron 4 of 4)	-61897	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA
chipseq_peak_11913	chr6	131402552	131402928	+	0	NA	Intergenic	Intergenic	-14290	NM_011733	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding
chipseq_peak_4148	chr14	12798986	12799401	+	0	NA	intron (NM_012061, intron 1 of 28)	intron (NM_012061, intron 1 of 28)	23886	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding
chipseq_peak_5736	chr16	49633460	49633985	+	0	NA	Intergenic	Intergenic	-65572	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding
chipseq_peak_3081	chr12	66355629	66356458	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-71642	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding
chipseq_peak_11450	chr6	46101330	46103048	+	0	NA	intron (NM_001004357, intron 8 of 23)	intron (NM_001004357, intron 8 of 23)	1042128	NM_001004357	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_10912	chr5	112064918	112065257	+	0	NA	Intergenic	L1M5|LINE|L1	-141676	NR_045378	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA
chipseq_peak_13686	chr9	76029181	76030128	+	0	NA	intron (NM_173731, intron 1 of 8)	intron (NM_173731, intron 1 of 8)	14677	NM_173731	208982	Mm.82306	NM_173731	ENSMUSG00000007908	Hmgcll1	BC037381	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	protein-coding
chipseq_peak_621	chr1	95222961	95223970	+	0	NA	Intergenic	Intergenic	-90163	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding
chipseq_peak_12106	chr7	51819573	51820804	+	0	NA	Intergenic	Intergenic	42079	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding
chipseq_peak_3793	chr13	83328483	83328831	+	0	NA	Intergenic	Intergenic	-175377	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
chipseq_peak_1165	chr1	187470142	187470549	+	0	NA	Intergenic	L1MB7|LINE|L1	-138661	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding
chipseq_peak_323	chr1	50824837	50825319	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-102445	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding
chipseq_peak_4092	chr13	114603291	114604757	+	0	NA	Intergenic	Intergenic	-3204	NR_045976	75161	Mm.50406	NM_175218	ENSMUSG00000051758	4930544M13Rik	-	RIKEN cDNA 4930544M13 gene	ncRNA
chipseq_peak_4697	chr14	115630415	115630764	+	0	NA	intron (NM_175500, intron 6 of 7)	intron (NM_175500, intron 6 of 7)	-221037	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA
chipseq_peak_6990	chr18	70118943	70120572	+	0	NA	intron (NM_001082553, intron 2 of 6)	intron (NM_001082553, intron 2 of 6)	21848	NM_001082553	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding
chipseq_peak_11464	chr6	47281418	47281954	+	0	NA	intron (NM_001004357, intron 22 of 23)	intron (NM_001004357, intron 22 of 23)	37290	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_1001	chr1	164395162	164395922	+	0	NA	intron (NM_001293313, intron 12 of 13)	intron (NM_001293313, intron 12 of 13)	62813	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding
chipseq_peak_10176	chr4	127576176	127576955	+	0	NA	Intergenic	L1M4b|LINE|L1	-218401	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding
chipseq_peak_11393	chr6	37465871	37466310	+	0	NA	Intergenic	L1MCa|LINE|L1	-23942	NM_178661	208647	Mm.169929	NM_178661		Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding
chipseq_peak_13328	chr9	16282302	16283052	+	0	NA	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	95554	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT tumor suppressor homolog 3 (Drosophila)	protein-coding
chipseq_peak_9788	chr4	50291522	50291897	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-445940	NM_001033351	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding
chipseq_peak_13532	chr9	49695352	49695665	+	0	NA	intron (NM_001113204, intron 1 of 18)	intron (NM_001113204, intron 1 of 18)	103561	NM_010875	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding
chipseq_peak_2765	chr12	26802626	26803301	+	0	NA	Intergenic	Intergenic	312032	NR_045052	100504347	Mm.130500	NR_045052		Gm20187	-	predicted gene, 20187	ncRNA
chipseq_peak_4472	chr14	81287421	81288437	+	0	NA	Intergenic	Intergenic	1287627	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_2853	chr12	37133940	37134593	+	0	NA	intron (NM_008584, intron 1 of 2)	intron (NM_008584, intron 1 of 2)	25720	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding
chipseq_peak_1032	chr1	169066372	169067933	+	0	NA	Intergenic	Intergenic	464312	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
chipseq_peak_11298	chr6	25026968	25027311	+	0	NA	Intergenic	Intergenic	-71014	NM_177013	319832	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding
chipseq_peak_8177	chr2	131882854	131883519	+	0	NA	Intergenic	Intergenic	-23439	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding
chipseq_peak_5900	chr16	69424475	69425757	+	0	NA	Intergenic	Intergenic	375265	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA
chipseq_peak_1745	chr10	85190483	85190999	+	0	NA	Intergenic	Intergenic	-5687	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding
chipseq_peak_378	chr1	56213519	56213964	+	0	NA	Intergenic	Intergenic	194763	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA
chipseq_peak_8779	chr3	57788174	57790500	+	0	NA	intron (NM_001304454, intron 4 of 9)	intron (NM_001304454, intron 4 of 9)	53275	NM_001304456	24017	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding
chipseq_peak_8754	chr3	55662073	55662416	+	0	NA	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-120266	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding
chipseq_peak_2721	chr12	14923425	14924939	+	0	NA	Intergenic	Intergenic	126207	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
chipseq_peak_1615	chr10	59565961	59567247	+	0	NA	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	50088	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding
chipseq_peak_3049	chr12	61415832	61416396	+	0	NA	Intergenic	Intergenic	105706	NR_045049	100504101	Mm.235026	NR_045049		Gm20063	-	predicted gene, 20063	ncRNA
chipseq_peak_8498	chr3	18905415	18906659	+	0	NA	Intergenic	Intergenic	257028	NM_028840	74252	Mm.200383	NM_028840		Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding
chipseq_peak_13159	chr8	105550935	105551321	+	0	NA	intron (NM_013477, intron 1 of 7)	(TTAA)n|Simple_repeat|Simple_repeat	14912	NM_013477	11972	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding
chipseq_peak_9510	chr4	13079992	13080637	+	0	NA	Intergenic	Intergenic	173477	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_3481	chr13	23581084	23581628	+	0	NA	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-246	NM_175654	319156	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding
chipseq_peak_2067	chr10	123751640	123752473	+	0	NA	Intergenic	Intergenic	487980	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_2065	chr10	123620799	123621168	+	0	NA	intron (NR_045514, intron 2 of 5)	intron (NR_045514, intron 2 of 5)	356907	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding
chipseq_peak_8873	chr3	72620785	72621313	+	0	NA	Intergenic	Intergenic	345817	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding
chipseq_peak_9968	chr4	80852909	80853911	+	0	NA	Intergenic	Intergenic	19197	NM_001282014	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding
chipseq_peak_519	chr1	72465307	72465592	+	0	NA	intron (NM_001045533, intron 1 of 3)	intron (NM_001045533, intron 1 of 3)	71115	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding
chipseq_peak_8062	chr2	107627442	107627701	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	336982	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_1720	chr10	74387467	74388089	+	0	NA	intron (NM_001142735, intron 17 of 32)	intron (NM_001142735, intron 17 of 32)	565911	NM_001142738	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
chipseq_peak_13833	chr9	103761792	103762112	+	0	NA	promoter-TSS (NM_178638)	promoter-TSS (NM_178638)	-115	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding
chipseq_peak_10089	chr4	103576268	103578347	+	0	NA	Intergenic	Intergenic	194807	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA
chipseq_peak_2711	chr12	13964454	13965233	+	0	NA	Intergenic	Intergenic	187195	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding
chipseq_peak_207	chr1	34005495	34005944	+	0	NA	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6106	NM_134448	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding
chipseq_peak_1507	chr10	43474621	43475211	+	0	NA	Intergenic	Intergenic	-4224	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding
chipseq_peak_11792	chr6	104932118	104932684	+	0	NA	Intergenic	Intergenic	439357	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_13787	chr9	97414342	97416196	+	0	NA	Intergenic	Intergenic	-45311	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
chipseq_peak_8421	chr2	180559476	180560205	+	0	NA	Intergenic	Charlie5|DNA|hAT-Charlie	-21464	NM_028479	73247	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding
chipseq_peak_9636	chr4	26084881	26085287	+	0	NA	Intergenic	L1M5|LINE|L1	261568	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding
chipseq_peak_10679	chr5	75184844	75185296	+	0	NA	intron (NM_011058, intron 16 of 22)	intron (NM_011058, intron 16 of 22)	8239	NR_105992	102465620		NR_105992	ENSMUSG00000099060	Mir7025	Gm27860|mmu-mir-7025	microRNA 7025	ncRNA
chipseq_peak_1773	chr10	90405174	90406016	+	0	NA	intron (NM_001128086, intron 12 of 24)	intron (NM_001128086, intron 12 of 24)	-170132	NM_001177397	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
chipseq_peak_11339	chr6	33044791	33045193	+	0	NA	intron (NM_025336, intron 2 of 7)	intron (NM_025336, intron 2 of 7)	15160	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
chipseq_peak_6347	chr17	62862431	62862969	+	0	NA	intron (NM_207654, intron 1 of 4)	intron (NM_207654, intron 1 of 4)	18617	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
chipseq_peak_342	chr1	53823581	53824486	+	0	NA	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-25391	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA
chipseq_peak_10760	chr5	85285646	85286670	+	0	NA	Intergenic	Intergenic	779425	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_157	chr1	30503184	30503571	+	0	NA	Intergenic	Intergenic	359879	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
chipseq_peak_2158	chr11	17083036	17083333	+	0	NA	Intergenic	Intergenic	31250	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding
chipseq_peak_145	chr1	27835168	27835765	+	0	NA	Intergenic	Intergenic	944786	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding
chipseq_peak_4771	chr15	6048163	6048702	+	0	NA	Intergenic	Intergenic	-251357	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
chipseq_peak_7343	chr19	60478096	60478545	+	0	NA	Intergenic	Intergenic	-10016	NM_201615	226278	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding
chipseq_peak_12433	chr7	111301827	111302844	+	0	NA	Intergenic	L3|LINE|CR1	-179660	NR_015573	75479	Mm.381620	NR_015573		1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA
chipseq_peak_1261	chr10	10246760	10248678	+	0	NA	Intergenic	Intergenic	224595	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding
chipseq_peak_3560	chr13	42757259	42759411	+	0	NA	intron (NM_001302635, intron 3 of 13)	intron (NM_001302635, intron 3 of 13)	48754	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_2722	chr12	14930732	14931101	+	0	NA	Intergenic	Intergenic	119473	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
chipseq_peak_13986	chrX	43201921	43202751	+	0	NA	intron (NM_011855, intron 1 of 32)	intron (NM_011855, intron 1 of 32)	72448	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding
chipseq_peak_12509	chr7	126265792	126266244	+	0	NA	Intergenic	Intergenic	-6601	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding
chipseq_peak_9120	chr3	117615021	117615593	+	0	NA	intron (NM_029425, intron 1 of 5)	intron (NM_029425, intron 1 of 5)	40080	NM_029425	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding
chipseq_peak_3641	chr13	54621336	54621718	+	0	NA	promoter-TSS (NM_178397)	promoter-TSS (NM_178397)	-257	NM_178397	76577	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding
chipseq_peak_11374	chr6	36604960	36607267	+	0	NA	Intergenic	Intergenic	184371	NR_030524	735279		NR_030524	ENSMUSG00000070075	Mir490	Mirn490|mir-490|mmu-mir-490	microRNA 490	ncRNA
chipseq_peak_11015	chr5	131260844	131261362	+	0	NA	intron (NM_145218, intron 1 of 10)	MER58A|DNA|hAT-Charlie	46419	NM_145218	212996	Mm.299204	NM_145218		Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding
chipseq_peak_282	chr1	42229331	42231266	+	0	NA	Intergenic	MIR|SINE|MIR	464527	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
chipseq_peak_7761	chr2	58237145	58237842	+	0	NA	Intergenic	Intergenic	-39286	NR_040365	100502932	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	OTTMUSG00000012672	predicted gene 13544	ncRNA
chipseq_peak_552	chr1	79212467	79213107	+	0	NA	Intergenic	Intergenic	227303	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding
chipseq_peak_5317	chr15	73068825	73069291	+	0	NA	Intergenic	Intergenic	-7854	NM_180662	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding
chipseq_peak_6363	chr17	64406907	64407596	+	0	NA	Intergenic	Intergenic	-33555	NR_105848	102465228		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA
chipseq_peak_8484	chr3	18053992	18054434	+	0	NA	promoter-TSS (NM_021560)	promoter-TSS (NM_021560)	-112	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding
chipseq_peak_7944	chr2	80053838	80054395	+	0	NA	intron (NM_001159582, intron 2 of 15)	intron (NM_001159582, intron 2 of 15)	74855	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding
chipseq_peak_3411	chr13	8439123	8439799	+	0	NA	intron (NM_001289530, intron 1 of 9)	L1MA7|LINE|L1	236595	NM_001289530	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
chipseq_peak_3811	chr13	83762675	83763588	+	0	NA	Intergenic	Intergenic	24317	NR_029545	723967		NR_029545	ENSMUSG00000065424	Mir9-2	Mirn9-2|mir-9-2|mmu-mir-9-2	microRNA 9-2	ncRNA
chipseq_peak_4139	chr14	11085362	11085986	+	0	NA	intron (NM_001308285, intron 2 of 9)	intron (NM_001308285, intron 2 of 9)	76361	NM_010210	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding
chipseq_peak_517	chr1	72414080	72414631	+	0	NA	Intergenic	Intergenic	106934	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding
chipseq_peak_9508	chr4	12979256	12982855	+	0	NA	3' UTR (NM_001171801, exon 5 of 5)	3' UTR (NM_001171801, exon 5 of 5)	74218	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_3554	chr13	42725690	42725990	+	0	NA	intron (NM_001302635, intron 3 of 13)	intron (NM_001302635, intron 3 of 13)	16259	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_4915	chr15	24588772	24589299	+	0	NA	Intergenic	Intergenic	824729	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
chipseq_peak_5950	chr16	73107469	73109609	+	0	NA	Intergenic	Intergenic	445390	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
chipseq_peak_3748	chr13	81407282	81408702	+	0	NA	intron (NM_054053, intron 76 of 89)	intron (NM_054053, intron 76 of 89)	225152	NM_054053	110789	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding
chipseq_peak_14085	chrX	138740822	138741274	+	0	NA	intron (NM_030688, intron 6 of 10)	intron (NM_030688, intron 6 of 10)	-173382	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding
chipseq_peak_6507	chr17	88847202	88847979	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	-55614	NM_013582	16867	Mm.1644	NM_013582	ENSMUSG00000024107	Lhcgr	Gpcr19-rs1|LH-R|Lhr	luteinizing hormone/choriogonadotropin receptor	protein-coding
chipseq_peak_12070	chr7	38151640	38152086	+	0	NA	Intergenic	Intergenic	-31354	NM_001085385	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding
chipseq_peak_7072	chr19	10124127	10124607	+	0	NA	Intergenic	L1MB2|LINE|L1	-22864	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding
chipseq_peak_9498	chr4	12307193	12307587	+	0	NA	Intergenic	Intergenic	-135375	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
chipseq_peak_1962	chr10	109487951	109488375	+	0	NA	Intergenic	Intergenic	-477188	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding
chipseq_peak_6312	chr17	54473625	54474280	+	0	NA	Intergenic	Intergenic	-103878	NR_045825	69418	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA
chipseq_peak_10416	chr5	39803325	39804411	+	0	NA	Intergenic	Intergenic	-159237	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
chipseq_peak_6812	chr18	50365369	50365705	+	0	NA	Intergenic	Intergenic	87168	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding
chipseq_peak_1834	chr10	97373452	97374162	+	0	NA	Intergenic	Intergenic	-49671	NR_039547	100628616		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA
chipseq_peak_2753	chr12	26226244	26228292	+	0	NA	intron (NR_046278, intron 2 of 2)	intron (NR_046278, intron 2 of 2)	16001	NR_046278	74930	Mm.398932	NR_046278		4930480M12Rik	-	RIKEN cDNA 4930480M12 gene	ncRNA
chipseq_peak_6735	chr18	33443358	33444033	+	0	NA	intron (NM_001267717, intron 3 of 4)	Plat_L3|LINE|CR1	19939	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
chipseq_peak_13418	chr9	30140079	30140667	+	0	NA	Intergenic	Intergenic	-177244	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_326	chr1	51267038	51267568	+	0	NA	intron (NR_045151, intron 2 of 4)	intron (NR_045151, intron 2 of 4)	-21823	NM_138741	20324	Mm.398690	NM_138741	ENSMUSG00000045954	Sdpr	-	serum deprivation response	protein-coding
chipseq_peak_6460	chr17	81729091	81729686	+	0	NA	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	8999	NM_011406	20541	Mm.265834	NM_011406		Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
chipseq_peak_9059	chr3	106131617	106132090	+	0	NA	exon (NM_023186, exon 11 of 11)	exon (NM_023186, exon 11 of 11)	18471	NM_023186	81600	Mm.46418	NM_023186	ENSMUSG00000062778	Chia1	2200003E03Rik|AMCase|Chia|YNL	chitinase, acidic 1	protein-coding
chipseq_peak_8302	chr2	143689841	143690265	+	0	NA	intron (NM_008792, intron 3 of 11)	ID4_|SINE|ID	99133	NR_040625	378775	Mm.441313	NR_040625	ENSMUSG00000087115	Pcsk2os2	9430032N09Rik|Gm12360|OTTMUSG00000006467	proprotein convertase subtilisin/kexin type 2, opposite strand 2	ncRNA
chipseq_peak_13137	chr8	101778606	101779231	+	0	NA	Intergenic	Intergenic	1006193	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_4736	chr14	119725038	119725647	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	-23885	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA
chipseq_peak_472	chr1	68573970	68574211	+	0	NA	intron (NM_010154, intron 2 of 26)	intron (NM_010154, intron 2 of 26)	533969	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
chipseq_peak_10985	chr5	126007987	126008788	+	0	NA	Intergenic	Intergenic	475969	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding
chipseq_peak_7027	chr18	79055890	79056377	+	0	NA	intron (NM_053099, intron 2 of 5)	intron (NM_053099, intron 2 of 5)	53258	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
chipseq_peak_3617	chr13	47497558	47498126	+	0	NA	Intergenic	Intergenic	303839	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding
chipseq_peak_7681	chr2	49521029	49521654	+	0	NA	intron (NM_172663, intron 3 of 13)	intron (NM_172663, intron 3 of 13)	69855	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
chipseq_peak_1704	chr10	72221079	72221549	+	0	NA	Intergenic	Intergenic	-240624	NR_003644	108950	Mm.212793	NM_175390	ENSMUSG00000043859	1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo
chipseq_peak_3607	chr13	46522807	46524016	+	0	NA	intron (NM_026056, intron 1 of 12)	intron (NM_026056, intron 1 of 12)	21508	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding
chipseq_peak_7400	chr2	7371099	7371502	+	0	NA	intron (NM_001110231, intron 2 of 15)	intron (NM_001110231, intron 2 of 15)	24700	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_5308	chr15	71739312	71739949	+	0	NA	Intergenic	L1ME3F|LINE|L1	-11792	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
chipseq_peak_892	chr1	144367407	144367949	+	0	NA	Intergenic	Intergenic	-118574	NM_015811	50778	Mm.103701	NM_015811		Rgs1	BL34	regulator of G-protein signaling 1	protein-coding
chipseq_peak_14041	chrX	76790703	76791235	+	0	NA	Intergenic	Intergenic	-188045	NM_001201395	74987	Mm.107996	NM_001201395	ENSMUSG00000079525	Cldn34d	4930468A15Rik	claudin 34D	protein-coding
chipseq_peak_1249	chr10	9393325	9393817	+	0	NA	Intergenic	Intergenic	281637	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
chipseq_peak_13603	chr9	59188255	59188727	+	0	NA	Intergenic	Intergenic	-103081	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding
chipseq_peak_10705	chr5	79900694	79901181	+	0	NA	Intergenic	Intergenic	-385033	NR_035474	100316701		NR_035474	ENSMUSG00000089570	Mir669m-1	mmu-mir-669m-1	microRNA 669m-1	ncRNA
chipseq_peak_11856	chr6	112057732	112058433	+	0	NA	Intergenic	Intergenic	-152626	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA
chipseq_peak_10978	chr5	124269445	124270205	+	0	NA	intron (NM_001277867, intron 15 of 22)	intron (NM_001277867, intron 15 of 22)	-20065	NM_011256	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding
chipseq_peak_10790	chr5	89868796	89869206	+	0	NA	intron (NM_177872, intron 2 of 21)	intron (NM_177872, intron 2 of 21)	14333	NM_001081401	330119	Mm.133062	NM_177872		Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding
chipseq_peak_12689	chr8	25598770	25599343	+	0	NA	Intergenic	Intergenic	-1569	NM_173012	270035	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding
chipseq_peak_7950	chr2	80731362	80731680	+	0	NA	Intergenic	Intergenic	92257	NM_001190179	69482	Mm.29200	NM_027091		Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding
chipseq_peak_2308	chr11	41812967	41813415	+	0	NA	Intergenic	Intergenic	187523	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding
chipseq_peak_9607	chr4	23850206	23851204	+	0	NA	Intergenic	Intergenic	-645757	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_11302	chr6	25866867	25868438	+	0	NA	Intergenic	Intergenic	-58426	NM_133931	101185	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding
chipseq_peak_12723	chr8	33100402	33100971	+	0	NA	Intergenic	Intergenic	-150660	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding
chipseq_peak_13725	chr9	84441440	84442145	+	0	NA	Intergenic	Intergenic	-332606	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA
chipseq_peak_723	chr1	114862352	114863600	+	0	NA	Intergenic	Intergenic	-822161	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_12727	chr8	34359082	34359376	+	0	NA	Intergenic	Intergenic	-192517	NR_105820	102465211		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA
chipseq_peak_3753	chr13	81782920	81784085	+	0	NA	intron (NM_007684, intron 1 of 4)	CpG	210	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_6574	chr18	10404724	10405317	+	0	NA	intron (NM_001083628, intron 1 of 32)	intron (NM_001083628, intron 1 of 32)	79841	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding
chipseq_peak_12592	chr8	7190016	7191406	+	0	NA	Intergenic	Intergenic	1470062	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_4674	chr14	113913487	113914325	+	0	NA	Intergenic	Intergenic	-918059	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_9971	chr4	81058739	81059758	+	0	NA	Intergenic	Intergenic	148562	NM_026821	52829	Mm.273986	NM_026821		Lurap1l	1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1	leucine rich adaptor protein 1-like	protein-coding
chipseq_peak_12792	chr8	43452144	43453274	+	0	NA	Intergenic	Intergenic	75428	NM_001009547	382007	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding
chipseq_peak_998	chr1	163751393	163752057	+	0	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-26493	NM_001143956	240879	Mm.484621	NM_001143956		Mettl11b	Gm207|NTM1B	methyltransferase like 11B	protein-coding
chipseq_peak_4581	chr14	98891266	98891634	+	0	NA	Intergenic	Intergenic	154686	NM_175245	76789	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding
chipseq_peak_7112	chr19	19542305	19543132	+	0	NA	Intergenic	Intergenic	-431522	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
chipseq_peak_4846	chr15	18079182	18081062	+	0	NA	intron (NR_045711, intron 11 of 11)	intron (NR_045711, intron 11 of 11)	289505	NR_045711	70886	Mm.399021	NR_045711		4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA
chipseq_peak_3042	chr12	60223651	60224296	+	0	NA	Intergenic	Intergenic	-1004490	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
chipseq_peak_4552	chr14	93713393	93714625	+	0	NA	intron (NM_001081377, intron 1 of 3)	intron (NM_001081377, intron 1 of 3)	174879	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_4691	chr14	115129561	115130856	+	0	NA	intron (NM_175500, intron 1 of 7)	intron (NM_175500, intron 1 of 7)	37993	NM_175500	103978	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding
chipseq_peak_3815	chr13	83984083	83985688	+	0	NA	Intergenic	Intergenic	79889	NR_131220	553095	Mm.39702	NR_131220		Gm17750	-	predicted gene, 17750	ncRNA
chipseq_peak_3341	chr12	108411685	108412065	+	0	NA	intron (NM_001043336, intron 1 of 21)	intron (NM_001043336, intron 1 of 21)	1242	NM_001043336	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding
chipseq_peak_3200	chr12	78153668	78154402	+	0	NA	Intergenic	Intergenic	-72620	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding
chipseq_peak_9576	chr4	19441189	19441472	+	0	NA	intron (NM_013927, intron 13 of 17)	intron (NM_013927, intron 13 of 17)	128774	NM_027769	70568	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding
chipseq_peak_3051	chr12	61806922	61810366	+	0	NA	intron (NM_001310586, intron 2 of 5)	B1_Mm|SINE|Alu	285477	NM_178714	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
chipseq_peak_4870	chr15	20084243	20086479	+	0	NA	Intergenic	Intergenic	581389	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_11927	chr6	136553874	136556027	+	0	NA	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36099	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding
chipseq_peak_5097	chr15	49751706	49753380	+	0	NA	Intergenic	Intergenic	-960554	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
chipseq_peak_8361	chr2	161894740	161895126	+	0	NA	intron (NM_001291150, intron 9 of 30)	intron (NM_001291150, intron 9 of 30)	-495880	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA
chipseq_peak_171	chr1	31219239	31219853	+	0	NA	intron (NR_033445, intron 1 of 2)	intron (NR_033445, intron 1 of 2)	3110	NR_033445	70988	Mm.161414	NM_027637	ENSMUSG00000086727	4931428L18Rik	4930563O14Rik	RIKEN cDNA 4931428L18 gene	ncRNA
chipseq_peak_12989	chr8	69158610	69159047	+	0	NA	Intergenic	Intergenic	-17875	NM_199364	211134	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1	leucine zipper, putative tumor suppressor 1	protein-coding
chipseq_peak_2147	chr11	14333099	14333979	+	0	NA	Intergenic	Intergenic	-154498	NR_131011	75280	Mm.108492	NR_131011		4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA
chipseq_peak_2119	chr11	6075589	6076102	+	0	NA	Intergenic	Intergenic	-10097	NM_001174053	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	-	calcium/calmodulin-dependent protein kinase II, beta	protein-coding
chipseq_peak_10107	chr4	104628799	104629144	+	0	NA	intron (NR_104385, intron 4 of 15)	intron (NR_104385, intron 4 of 15)	-137346	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding
chipseq_peak_300	chr1	46269029	46270133	+	0	NA	intron (NM_001160386, intron 49 of 65)	intron (NM_001160386, intron 49 of 65)	-155937	NM_001310335	100101919	Mm.383402	NM_001310335	ENSMUSG00000101337	Dnah7c	Dnahc7c	dynein, axonemal, heavy chain 7C	protein-coding
chipseq_peak_8287	chr2	142625630	142626124	+	0	NA	intron (NM_001081133, intron 25 of 25)	L1ME3A|LINE|L1	275587	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_1538	chr10	48581815	48583162	+	0	NA	Intergenic	Intergenic	513355	NR_046212	100418235	Mm.185993	NR_046212		C130030K03Rik	-	proteasome (prosome, macropain) subunit, alpha type 6 pseudogene	pseudo
chipseq_peak_10747	chr5	83961146	83961792	+	0	NA	Intergenic	RMER15-int|LTR|ERVL	455913	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_4828	chr15	15257284	15260119	+	0	NA	Intergenic	Intergenic	-1519400	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
chipseq_peak_8566	chr3	29292815	29293252	+	0	NA	intron (NM_001167748, intron 4 of 12)	intron (NM_001167748, intron 4 of 12)	-123790	NR_030422	791072		NR_030422	ENSMUSG00000076120	Mir551b	Mirn551b|mir-551b	microRNA 551b	ncRNA
chipseq_peak_13570	chr9	52782374	52782849	+	0	NA	intron (NR_045333, intron 3 of 4)	L1MD|LINE|L1	102748	NR_045333	382139	Mm.335162	NR_045333		Gm1715	-	predicted gene 1715	ncRNA
chipseq_peak_12291	chr7	88199870	88200400	+	0	NA	Intergenic	Intergenic	-77950	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding
chipseq_peak_13639	chr9	62222503	62222949	+	0	NA	Intergenic	Intergenic	21374	NR_040769	330958	Mm.411888	NR_040769		A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA
chipseq_peak_11869	chr6	115122177	115122567	+	0	NA	Intergenic	Intergenic	12463	NR_132436	100503783	Mm.102390	NR_132436	ENSMUSG00000097486	Gm17733	-	predicted gene, 17733	ncRNA
chipseq_peak_11022	chr5	131707617	131708017	+	0	NA	intron (NM_177047, intron 5 of 18)	intron (NM_177047, intron 5 of 18)	-172452	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_700	chr1	108389642	108390777	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	472950	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
chipseq_peak_9385	chr3	151566417	151567916	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	129284	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_222	chr1	37077756	37078410	+	0	NA	Intergenic	Intergenic	-138556	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding
chipseq_peak_5520	chr16	17069169	17069797	+	0	NA	promoter-TSS (NM_023249)	promoter-TSS (NM_023249)	-656	NM_001291047	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding
chipseq_peak_14100	chrX	155557922	155558632	+	0	NA	Intergenic	Intergenic	65050	NM_001093750	211612	Mm.218811	NM_001093750		Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding
chipseq_peak_355	chr1	54979220	54979461	+	0	NA	Intergenic	Intergenic	48138	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding
chipseq_peak_9227	chr3	128797794	128798359	+	0	NA	Intergenic	Intergenic	-401802	NM_001286942	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding
chipseq_peak_4897	chr15	22640379	22641024	+	0	NA	Intergenic	Intergenic	74283	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding
chipseq_peak_13406	chr9	28861978	28862505	+	0	NA	intron (NM_177906, intron 4 of 7)	MER103C|DNA|hAT-Charlie	1070972	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_1986	chr10	110931158	110931660	+	0	NA	intron (NM_007792, intron 1 of 5)	intron (NM_007792, intron 1 of 5)	11233	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding
chipseq_peak_4871	chr15	20115157	20115440	+	0	NA	Intergenic	Intergenic	551452	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_3382	chr13	5492089	5492720	+	0	NA	Intergenic	L1M5|LINE|L1	365688	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
chipseq_peak_412	chr1	57342391	57342659	+	0	NA	Intergenic	Intergenic	35019	NR_037999	75323	Mm.362968	NR_037999	ENSMUSG00000097519	4930558J18Rik	-	RIKEN cDNA 4930558J18 gene	ncRNA
chipseq_peak_2777	chr12	27990921	27991271	+	0	NA	Intergenic	L1_Mur3|LINE|L1	557241	NM_001177964	68511	Mm.310284	NM_001177964	ENSMUSG00000020633	Dcdc2c	1110015M06Rik	doublecortin domain containing 2C	protein-coding
chipseq_peak_2771	chr12	27565172	27566151	+	0	NA	Intergenic	Intergenic	-222943	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding
chipseq_peak_1401	chr10	28696110	28696621	+	0	NA	intron (NM_178666, intron 1 of 5)	intron (NM_178666, intron 1 of 5)	28005	NR_131208	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding
chipseq_peak_1680	chr10	69465533	69466467	+	0	NA	Intergenic	Intergenic	-67708	NM_170729	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_4809	chr15	13276741	13277572	+	0	NA	Intergenic	Intergenic	-103481	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
chipseq_peak_8931	chr3	80396248	80396724	+	0	NA	Intergenic	Intergenic	406305	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_147	chr1	28100166	28100620	+	0	NA	Intergenic	Intergenic	679859	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding
chipseq_peak_2552	chr11	105456901	105457330	+	0	NA	promoter-TSS (NM_172568)	promoter-TSS (NM_172568)	-380	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding
chipseq_peak_2727	chr12	15813653	15814246	+	0	NA	intron (NM_144551, intron 1 of 2)	intron (NM_144551, intron 1 of 2)	2836	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles homolog 2 (Drosophila)	protein-coding
chipseq_peak_11550	chr6	61296162	61296690	+	0	NA	intron (NM_183310, intron 1 of 10)	intron (NM_183310, intron 1 of 10)	-115616	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
chipseq_peak_8646	chr3	42757421	42758421	+	0	NA	Intergenic	Intergenic	1015303	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
chipseq_peak_13094	chr8	96489756	96490168	+	0	NA	Intergenic	Intergenic	56011	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
chipseq_peak_12847	chr8	49829355	49829674	+	0	NA	Intergenic	Intergenic	-538598	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
chipseq_peak_3457	chr13	17954221	17955151	+	0	NA	Intergenic	Intergenic	-10469	NM_019491	56044	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene homolog A (ras related)	protein-coding
chipseq_peak_9522	chr4	13437698	13438169	+	0	NA	Intergenic	Intergenic	-305369	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_1136	chr1	179614449	179614805	+	0	NA	intron (NM_146105, intron 9 of 10)	intron (NM_146105, intron 9 of 10)	-53604	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding
chipseq_peak_11490	chr6	50890402	50891422	+	0	NA	Intergenic	Intergenic	114797	NR_045984	319981	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA
chipseq_peak_13832	chr9	103739082	103739552	+	0	NA	intron (NM_178638, intron 2 of 5)	intron (NM_178638, intron 2 of 5)	22520	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding
chipseq_peak_13397	chr9	28423501	28423887	+	0	NA	intron (NM_177906, intron 2 of 7)	L1M4c|LINE|L1	632425	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_9716	chr4	34155353	34155933	+	0	NA	Intergenic	Intergenic	-105576	NM_026293	67652	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding
chipseq_peak_6146	chr17	3393617	3394516	+	0	NA	intron (NM_001122998, intron 1 of 26)	intron (NM_001122998, intron 1 of 26)	-3141	NM_011878	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
chipseq_peak_7241	chr19	37714224	37714841	+	0	NA	Intergenic	Intergenic	16724	NM_007811	13082	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding
chipseq_peak_13279	chr9	5401911	5403081	+	0	NA	Intergenic	Intergenic	57020	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding
chipseq_peak_12462	chr7	116735919	116736850	+	0	NA	Intergenic	Intergenic	232015	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding
chipseq_peak_2660	chr12	7215433	7216160	+	0	NA	Intergenic	Intergenic	164534	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_2480	chr11	86456874	86457959	+	0	NA	intron (NR_030571, intron 1 of 2)	intron (NR_030571, intron 1 of 2)	-27241	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding
chipseq_peak_5698	chr16	45213558	45214121	+	0	NA	Intergenic	L1_Rod|LINE|L1	-10498	NM_001037719	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding
chipseq_peak_3971	chr13	102344786	102345213	+	0	NA	Intergenic	Intergenic	-348559	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding
chipseq_peak_6557	chr18	4092078	4092526	+	0	NA	Intergenic	Intergenic	-73530	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding
chipseq_peak_2270	chr11	38600872	38601355	+	0	NA	Intergenic	Intergenic	-81068	NR_040295	100502917	Mm.61144	NR_040295		Gm12130	OTTMUSG00000005424	predicted gene 12130	ncRNA
chipseq_peak_10139	chr4	118341393	118342176	+	0	NA	Intergenic	L1MEd|LINE|L1	-18215	NR_003946	68180	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase homolog (E. coli)	protein-coding
chipseq_peak_4943	chr15	28917276	28920544	+	0	NA	Intergenic	Intergenic	715144	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
chipseq_peak_11119	chr5	149436481	149437360	+	0	NA	Intergenic	Intergenic	-2740	NM_001310763	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding
chipseq_peak_6805	chr18	48534163	48535540	+	0	NA	Intergenic	Intergenic	489516	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding
chipseq_peak_6908	chr18	61845294	61846410	+	0	NA	exon (NM_001164491, exon 7 of 24)	exon (NM_001164491, exon 7 of 24)	-59190	NM_178928	106877	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding
chipseq_peak_2208	chr11	25940634	25942523	+	0	NA	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-260662	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
chipseq_peak_5048	chr15	43942004	43942570	+	0	NA	Intergenic	Intergenic	-72258	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
chipseq_peak_6779	chr18	42861622	42861934	+	0	NA	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	37728	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
chipseq_peak_13940	chr9	118455174	118455874	+	0	NA	Intergenic	Intergenic	-22665	NM_001164789	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin homolog (Xenopus laevis)	protein-coding
chipseq_peak_3029	chr12	58743728	58744245	+	0	NA	Intergenic	Intergenic	268031	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding
chipseq_peak_5045	chr15	43825651	43825950	+	0	NA	Intergenic	L1MEf|LINE|L1	44229	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
chipseq_peak_11652	chr6	90746439	90746756	+	0	NA	intron (NM_001134384, intron 1 of 13)	intron (NM_001134384, intron 1 of 13)	-30068	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding
chipseq_peak_5480	chr16	6287628	6288340	+	0	NA	intron (NM_021477, intron 2 of 16)	intron (NM_021477, intron 2 of 16)	312397	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA
chipseq_peak_3766	chr13	82392854	82393992	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	304910	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
chipseq_peak_13641	chr9	62918646	62919335	+	0	NA	intron (NM_019663, intron 6 of 13)	L1ME4c|LINE|L1	-56966	NR_003965	677044	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	ENSMUSG00000074250	ribsomal protein S2 pseudogene	pseudo
chipseq_peak_7874	chr2	69773198	69774267	+	0	NA	intron (NM_001077684, intron 6 of 8)	intron (NM_001077684, intron 6 of 8)	15754	NM_001077684	75051	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding
chipseq_peak_5055	chr15	44669712	44670516	+	0	NA	Intergenic	L2|LINE|L2	36374	NM_001285843	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
chipseq_peak_8342	chr2	157843266	157843600	+	0	NA	intron (NM_025680, intron 11 of 15)	AT_rich|Low_complexity|Low_complexity	-71220	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding
chipseq_peak_4216	chr14	28267243	28267748	+	0	NA	intron (NM_177814, intron 13 of 15)	intron (NM_177814, intron 13 of 15)	-237978	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
chipseq_peak_2532	chr11	101626832	101627874	+	0	NA	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-596	NM_025654	66599	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding
chipseq_peak_9493	chr4	10507847	10508579	+	0	NA	intron (NR_045185, intron 4 of 4)	intron (NR_045185, intron 4 of 4)	289589	NR_045185	73624	Mm.67392	NR_045185	ENSMUSG00000086080	1700123O12Rik	-	RIKEN cDNA 1700123O12 gene	ncRNA
chipseq_peak_11280	chr6	22887563	22888515	+	0	NA	intron (NM_001081306, intron 1 of 29)	intron (NM_001081306, intron 1 of 29)	12537	NM_001311064	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding
chipseq_peak_12759	chr8	39021519	39022063	+	0	NA	intron (NM_030254, intron 1 of 7)	RMER15|LTR|ERVL	15924	NM_030254	80286	Mm.272722	NM_030254		Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding
chipseq_peak_13350	chr9	23788748	23789638	+	0	NA	Intergenic	Intergenic	-308825	NM_175678	319239	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
chipseq_peak_3663	chr13	59144393	59146068	+	0	NA	Intergenic	Intergenic	337533	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
chipseq_peak_8327	chr2	154532756	154533168	+	0	NA	intron (NM_001285446, intron 10 of 10)	intron (NM_001285446, intron 10 of 10)	-15942	NM_029305	75480	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding
chipseq_peak_9413	chr3	155536654	155537276	+	0	NA	Intergenic	Intergenic	-439389	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
chipseq_peak_360	chr1	55897145	55901110	+	0	NA	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-32114	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
chipseq_peak_8238	chr2	139784559	139785398	+	0	NA	Intergenic	Intergenic	106800	NM_001276489	319909	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1 homolog (zebrafish)	protein-coding
chipseq_peak_2190	chr11	24483874	24484272	+	0	NA	intron (NR_045857, intron 1 of 3)	intron (NR_045857, intron 1 of 3)	2164	NR_045857	71316	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA
chipseq_peak_4220	chr14	28525285	28525973	+	0	NA	TTS (NM_009524)	TTS (NM_009524)	14224	NM_001256224	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
chipseq_peak_7163	chr19	24498187	24498455	+	0	NA	intron (NM_008846, intron 1 of 14)	intron (NM_008846, intron 1 of 14)	-20847	NM_026520	68034	Mm.440181	NM_026520		Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding
chipseq_peak_10586	chr5	63579162	63580091	+	0	NA	Intergenic	Intergenic	-69477	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding
chipseq_peak_12033	chr7	6776331	6776640	+	0	NA	intron (NM_021323, intron 2 of 7)	intron (NM_021323, intron 2 of 7)	-27102	NR_037213	100499513		NR_037213	ENSMUSG00000092815	Mir3099	mir-3099|mmu-mir-3099	microRNA 3099	ncRNA
chipseq_peak_11938	chr6	137643838	137644333	+	0	NA	intron (NM_007945, intron 1 of 21)	L1MC3|LINE|L1	5200	NM_001271588	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding
chipseq_peak_11368	chr6	34514749	34515005	+	0	NA	Intergenic	Intergenic	38521	NM_007563	12183	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding
chipseq_peak_10116	chr4	105051328	105052118	+	0	NA	intron (NM_178143, intron 3 of 8)	intron (NM_178143, intron 3 of 8)	58175	NM_178143	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding
chipseq_peak_6620	chr18	19776814	19777678	+	0	NA	Intergenic	Intergenic	224851	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
chipseq_peak_10767	chr5	85772629	85773022	+	0	NA	Intergenic	Intergenic	292758	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_12469	chr7	117174618	117175483	+	0	NA	Intergenic	Intergenic	-205929	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding
chipseq_peak_11352	chr6	33597238	33597648	+	0	NA	intron (NM_009148, intron 10 of 17)	intron (NM_009148, intron 10 of 17)	348293	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
chipseq_peak_10125	chr4	108359456	108360973	+	0	NA	Intergenic	Intergenic	23441	NM_001099303	545667	Mm.380025	NM_001099303		Fam159a	OTTMUSG00000008243	family with sequence similarity 159, member A	protein-coding
chipseq_peak_5898	chr16	68898131	68899303	+	0	NA	Intergenic	L1Md_Gf|LINE|L1	901664	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA
chipseq_peak_6566	chr18	7563202	7564002	+	0	NA	intron (NM_001161620, intron 1 of 12)	intron (NM_001161620, intron 1 of 12)	63261	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding
chipseq_peak_10717	chr5	81321207	81323248	+	0	NA	intron (NM_198702, intron 4 of 27)	intron (NM_198702, intron 4 of 27)	300634	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_6096	chr16	88488102	88488496	+	0	NA	Intergenic	Intergenic	18679	NM_181490	239931	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding
chipseq_peak_7683	chr2	49741800	49742187	+	0	NA	exon (NM_008449, exon 19 of 26)	exon (NM_008449, exon 19 of 26)	-45693	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding
chipseq_peak_3958	chr13	101129408	101129896	+	0	NA	Intergenic	Intergenic	-102475	NR_046158	328324	Mm.402274	NR_046158		5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA
chipseq_peak_5826	chr16	62653602	62654266	+	0	NA	Intergenic	Intergenic	132782	NM_178925	106338	Mm.26321	NM_178925		Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding
chipseq_peak_13774	chr9	95055878	95056598	+	0	NA	intron (NM_177909, intron 12 of 15)	intron (NM_177909, intron 12 of 15)	304409	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA
chipseq_peak_2359	chr11	54675887	54676263	+	0	NA	intron (NM_001252496, intron 23 of 28)	intron (NM_001252496, intron 23 of 28)	79929	NM_001252498	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding
chipseq_peak_12042	chr7	25278209	25279174	+	0	NA	intron (NM_001302811, intron 2 of 20)	CpG	-3488	NM_027882	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua homolog (Drosophila)	protein-coding
chipseq_peak_6629	chr18	20344056	20344738	+	0	NA	Intergenic	Intergenic	-32438	NM_181682	225256	Mm.269128	NM_181682	ENSMUSG00000061928	Dsg1b	Dsg5	desmoglein 1 beta	protein-coding
chipseq_peak_11560	chr6	62407656	62408117	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-848971	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
chipseq_peak_11133	chr6	4621492	4621822	+	0	NA	intron (NM_145398, intron 8 of 17)	intron (NM_145398, intron 8 of 17)	20591	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1	CAS1 domain containing 1	protein-coding
chipseq_peak_9700	chr4	32486094	32487743	+	0	NA	intron (NM_001109661, intron 1 of 4)	intron (NM_001109661, intron 1 of 4)	69483	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology 2	protein-coding
chipseq_peak_9380	chr3	151216070	151217351	+	0	NA	Intergenic	Intergenic	-221172	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_287	chr1	42539821	42540750	+	0	NA	Intergenic	Intergenic	154540	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
chipseq_peak_3580	chr13	45133372	45134124	+	0	NA	Intergenic	Intergenic	-131652	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding
chipseq_peak_1653	chr10	67746091	67746427	+	0	NA	Intergenic	Intergenic	166403	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding
chipseq_peak_2132	chr11	11014149	11014907	+	0	NA	Intergenic	Intergenic	-99488	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding
chipseq_peak_5225	chr15	64562382	64563050	+	0	NA	Intergenic	Intergenic	-179797	NM_001276461	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding
chipseq_peak_8437	chr3	8051257	8051614	+	0	NA	Intergenic	Intergenic	-96548	NR_040587	75476	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA
chipseq_peak_4699	chr14	115636004	115636663	+	0	NA	intron (NM_175500, intron 6 of 7)	intron (NM_175500, intron 6 of 7)	-226781	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA
chipseq_peak_6930	chr18	66348972	66349694	+	0	NA	Intergenic	L4_C_Mam|LINE|RTE-X	-57495	NM_178793	320924	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding
chipseq_peak_10632	chr5	70842348	70843659	+	0	NA	promoter-TSS (NM_010252)	promoter-TSS (NM_010252)	-386	NM_010252	14405	Mm.255292	NM_010252	ENSMUSG00000001260	Gabrg1	GabaA|GabaA/BZ	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	protein-coding
chipseq_peak_11684	chr6	97112080	97112650	+	0	NA	intron (NM_175313, intron 17 of 17)	MER58A|DNA|hAT-Charlie	36518	NM_175313	101351	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding
chipseq_peak_1860	chr10	99476149	99476984	+	0	NA	Intergenic	Intergenic	-132605	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA
chipseq_peak_13765	chr9	93571487	93572226	+	0	NA	Intergenic	Intergenic	-566123	NR_040756	78349	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA
chipseq_peak_616	chr1	94502000	94504534	+	0	NA	Intergenic	Intergenic	-294175	NR_040473	74689	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA
chipseq_peak_8472	chr3	15172618	15172974	+	0	NA	Intergenic	Intergenic	159506	NM_001076679	751864	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding
chipseq_peak_11401	chr6	38944314	38944826	+	0	NA	intron (NM_011539, intron 1 of 12)	Charlie24|DNA|hAT-Charlie	25584	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding
chipseq_peak_1325	chr10	19471235	19472407	+	0	NA	Intergenic	Intergenic	115282	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
chipseq_peak_5464	chr16	5287438	5288229	+	0	NA	Intergenic	MYSERV16_I-int|LTR|ERVK	-31877	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
chipseq_peak_2912	chr12	44343052	44343364	+	0	NA	intron (NM_176930, intron 1 of 30)	intron (NM_176930, intron 1 of 30)	14323	NM_176930	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding
chipseq_peak_5556	chr16	26231015	26232074	+	0	NA	Intergenic	Intergenic	-125760	NM_173379	210530	Mm.326869	NM_173379		P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding
chipseq_peak_1582	chr10	54549003	54549333	+	0	NA	Intergenic	Intergenic	473246	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA
chipseq_peak_13707	chr9	79382223	79382731	+	0	NA	Intergenic	Intergenic	136825	NR_045336	100038575	Mm.367838	NR_045336		Gm10635	ENSMUSG00000074174	predicted gene 10635	ncRNA
chipseq_peak_45	chr1	14915799	14917318	+	0	NA	intron (NM_177781, intron 1 of 26)	intron (NM_177781, intron 1 of 26)	2304	NM_177781	277328	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding
chipseq_peak_13237	chr8	121832467	121832825	+	0	NA	Intergenic	Intergenic	-3077	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding
chipseq_peak_8274	chr2	142055217	142056039	+	0	NA	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	845836	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_11826	chr6	108321696	108322283	+	0	NA	intron (NM_010585, intron 4 of 61)	L1MC4|LINE|L1	108893	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding
chipseq_peak_7385	chr2	7006643	7007344	+	0	NA	intron (NM_001110231, intron 3 of 15)	L1M6|LINE|L1	74309	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_2524	chr11	100560767	100561367	+	0	NA	intron (NM_028918, intron 7 of 11)	(TG)n|Simple_repeat|Simple_repeat	-13872	NM_009923	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding
chipseq_peak_8503	chr3	19824840	19825672	+	0	NA	Intergenic	Intergenic	-69615	NR_027985	70808	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo
chipseq_peak_4762	chr14	124220749	124221340	+	0	NA	intron (NM_207667, intron 1 of 4)	intron (NM_207667, intron 1 of 4)	-28498	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding
chipseq_peak_3355	chr12	117267936	117268920	+	0	NA	intron (NR_044987, intron 1 of 2)	RCHARR1|DNA|hAT-Charlie	17611	NR_029563	387171		NR_029563	ENSMUSG00000065538	Mir153	Mirn153|mir-153|mmu-mir-153	microRNA 153	ncRNA
chipseq_peak_1672	chr10	68806076	68806807	+	0	NA	Intergenic	Intergenic	82695	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding
chipseq_peak_630	chr1	96432641	96433689	+	0	NA	Intergenic	Intergenic	229408	NR_040478	75159	Mm.243854	NR_040478	ENSMUSG00000100589	4930533P14Rik	-	RIKEN cDNA 4930533P14 gene	ncRNA
chipseq_peak_9857	chr4	67723239	67723956	+	0	NA	Intergenic	MIRb|SINE|MIR	896046	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding
chipseq_peak_10828	chr5	98151979	98152622	+	0	NA	Intergenic	L1M4|LINE|L1	-28569	NM_029947	77630	Mm.332511	NM_029947		Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding
chipseq_peak_9370	chr3	150479630	150481378	+	0	NA	Intergenic	Intergenic	-957378	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
chipseq_peak_6107	chr16	91531438	91532202	+	0	NA	Intergenic	RMER16-int|LTR|ERVK	-15274	NM_008338	15980	Mm.249364	NM_008338		Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding
chipseq_peak_8865	chr3	70861205	70861937	+	0	NA	Intergenic	Intergenic	-54280	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
chipseq_peak_6563	chr18	7023473	7023922	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-18918	NM_177595	210719	Mm.257186	NM_177595	ENSMUSG00000061013	Mkx	9430023B20Rik|Irxl1	mohawk homeobox	protein-coding
chipseq_peak_5912	chr16	70654467	70655326	+	0	NA	Intergenic	Intergenic	38471	NR_040474	52645	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA
chipseq_peak_3322	chr12	100575741	100576011	+	0	NA	intron (NM_153587, intron 9 of 17)	intron (NM_153587, intron 9 of 17)	-55054	NM_001033213	104718	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding
chipseq_peak_12594	chr8	7397134	7398282	+	0	NA	Intergenic	Intergenic	1263065	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
chipseq_peak_2730	chr12	16551095	16551784	+	0	NA	intron (NM_172950, intron 13 of 19)	intron (NM_172950, intron 13 of 19)	38331	NM_001130412	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding
chipseq_peak_3263	chr12	92029143	92029824	+	0	NA	Intergenic	Intergenic	-180326	NM_001039089	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chipseq_peak_11270	chr6	22205553	22207076	+	0	NA	intron (NM_001081351, intron 15 of 21)	intron (NM_001081351, intron 15 of 21)	-81913	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding
chipseq_peak_7576	chr2	41508964	41509346	+	0	NA	intron (NM_053011, intron 8 of 90)	intron (NM_053011, intron 8 of 90)	938413	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
chipseq_peak_11176	chr6	12385482	12386659	+	0	NA	intron (NM_001164805, intron 11 of 26)	intron (NM_001164805, intron 11 of 26)	-276490	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo
chipseq_peak_8807	chr3	65321852	65322973	+	0	NA	intron (NM_001289450, intron 9 of 14)	intron (NM_001289450, intron 9 of 14)	-19727	NR_126080	102637797	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA
chipseq_peak_4759	chr14	123541947	123542848	+	0	NA	intron (NM_177393, intron 7 of 43)	intron (NM_177393, intron 7 of 43)	84747	NM_177393	338370	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding
chipseq_peak_13141	chr8	102000399	102001108	+	0	NA	Intergenic	Intergenic	784358	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_8252	chr2	140592628	140593513	+	0	NA	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	78406	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
chipseq_peak_6416	chr17	72819647	72820074	+	0	NA	Intergenic	Intergenic	-16844	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding
chipseq_peak_5824	chr16	62440585	62441662	+	0	NA	Intergenic	Intergenic	345593	NM_178925	106338	Mm.26321	NM_178925		Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding
chipseq_peak_5358	chr15	84352351	84352772	+	0	NA	Intergenic	Intergenic	26442	NM_001162500	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding
chipseq_peak_11729	chr6	100011291	100012091	+	0	NA	Intergenic	Intergenic	275667	NM_019743	56353	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
chipseq_peak_7167	chr19	26354370	26355017	+	0	NA	Intergenic	Intergenic	-250467	NM_011416	67155	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
chipseq_peak_10259	chr5	7073716	7074387	+	0	NA	intron (NM_001163223, intron 1 of 3)	Lx5c|LINE|L1	-230113	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding
chipseq_peak_7459	chr2	12292452	12292802	+	0	NA	intron (NM_001001309, intron 2 of 29)	intron (NM_001001309, intron 2 of 29)	-8619	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA
chipseq_peak_5441	chr15	97663904	97664452	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	41644	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding
chipseq_peak_9879	chr4	71470663	71471149	+	0	NA	Intergenic	L1MA8|LINE|L1	729987	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
chipseq_peak_13018	chr8	77781283	77781617	+	0	NA	Intergenic	Zaphod2|DNA|hAT-Tip100	-56998	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding
chipseq_peak_8447	chr3	9814663	9815117	+	0	NA	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	18789	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding
chipseq_peak_93	chr1	21922446	21923722	+	0	NA	intron (NM_001310477, intron 1 of 12)	intron (NM_001310477, intron 1 of 12)	38858	NM_023872	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding
chipseq_peak_10265	chr5	8289877	8290990	+	0	NA	intron (NM_001310440, intron 3 of 30)	intron (NM_001310440, intron 3 of 30)	77727	NM_001310440	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding
chipseq_peak_9217	chr3	126810335	126811198	+	0	NA	intron (NM_001293665, intron 15 of 19)	intron (NM_001293665, intron 15 of 19)	132620	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	AI835472|AW491075|Ank-2	ankyrin 2, brain	protein-coding
chipseq_peak_10564	chr5	62480850	62481284	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	285110	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
chipseq_peak_14147	chrX	168013554	168013995	+	0	NA	intron (NM_001033330, intron 3 of 19)	intron (NM_001033330, intron 3 of 19)	109223	NM_001290427	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding
chipseq_peak_8914	chr3	79469383	79469758	+	0	NA	intron (NM_001162999, intron 14 of 16)	L1ME1|LINE|L1	98109	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding
chipseq_peak_12355	chr7	92316340	92316705	+	0	NA	intron (NM_011807, intron 14 of 22)	intron (NM_011807, intron 14 of 22)	81552	NM_001243047	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_12146	chr7	56356407	56357295	+	0	NA	intron (NM_021879, intron 18 of 23)	intron (NM_021879, intron 18 of 23)	117080	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p	oculocutaneous albinism II	protein-coding
chipseq_peak_6958	chr18	68098354	68098966	+	0	NA	intron (NM_172631, intron 2 of 5)	intron (NM_172631, intron 2 of 5)	162313	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA
chipseq_peak_8911	chr3	79160585	79161899	+	0	NA	Intergenic	Intergenic	-15367	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_3758	chr13	81909777	81911004	+	0	NA	Intergenic	Intergenic	127098	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_3352	chr12	116804651	116805072	+	0	NA	intron (NM_011215, intron 3 of 22)	intron (NM_011215, intron 3 of 22)	319141	NM_011215	19276	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding
chipseq_peak_203	chr1	33935867	33936419	+	0	NA	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	27918	NM_001276764	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding
chipseq_peak_6964	chr18	68702879	68703372	+	0	NA	Intergenic	Intergenic	-36275	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA
chipseq_peak_2527	chr11	100826095	100826813	+	0	NA	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	-3884	NM_011489	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding
chipseq_peak_329	chr1	51640341	51640804	+	0	NA	Intergenic	Intergenic	-162173	NM_001310548	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding
chipseq_peak_3972	chr13	102488660	102489640	+	0	NA	Intergenic	L1MA4|LINE|L1	-204408	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding
chipseq_peak_2629	chr12	4407125	4408258	+	0	NA	intron (NM_010881, intron 2 of 22)	L1MC5|LINE|L1	69491	NM_010881	17977	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|SRC-1|SRC1|bHLHe74	nuclear receptor coactivator 1	protein-coding
chipseq_peak_893	chr1	144391878	144392168	+	0	NA	Intergenic	Intergenic	-142919	NM_015811	50778	Mm.103701	NM_015811		Rgs1	BL34	regulator of G-protein signaling 1	protein-coding
chipseq_peak_5740	chr16	49965640	49965946	+	0	NA	Intergenic	Intergenic	-14667	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA
chipseq_peak_1952	chr10	108709957	108711037	+	0	NA	intron (NM_001252342, intron 3 of 10)	intron (NM_001252342, intron 3 of 10)	-10337	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding
chipseq_peak_2768	chr12	26999139	27000031	+	0	NA	Intergenic	Intergenic	115410	NR_045052	100504347	Mm.130500	NR_045052		Gm20187	-	predicted gene, 20187	ncRNA
chipseq_peak_6528	chr17	90704813	90705507	+	0	NA	intron (NM_020252, intron 5 of 22)	intron (NM_020252, intron 5 of 22)	-156009	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_2191	chr11	24695213	24696588	+	0	NA	Intergenic	Intergenic	34822	NR_033491	100038617	Mm.387376	NR_033491	ENSMUSG00000073103	Gm10466	ENSMUSG00000073103	predicted gene 10466	ncRNA
chipseq_peak_7143	chr19	22869741	22870564	+	0	NA	intron (NM_001035239, intron 9 of 24)	L1_Rod|LINE|L1	119547	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA
chipseq_peak_5555	chr16	26002739	26003484	+	0	NA	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	102673	NM_173379	210530	Mm.326869	NM_173379		P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding
chipseq_peak_2380	chr11	65397194	65397507	+	0	NA	Intergenic	Intergenic	-109517	NR_040280	327946	Mm.383301	NR_040280	ENSMUSG00000085162	Gm12295	A730013G04|OTTMUSG00000005904	predicted gene 12295	ncRNA
chipseq_peak_2422	chr11	76300673	76301255	+	0	NA	intron (NM_008750, intron 1 of 7)	L4_A_Mam|LINE|RTE-X	57228	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90	RNA methyltransferase like 1	protein-coding
chipseq_peak_8289	chr2	142718937	142719894	+	0	NA	intron (NM_001081133, intron 17 of 25)	intron (NM_001081133, intron 17 of 25)	182049	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_1923	chr10	106121163	106123475	+	0	NA	Intergenic	L1MA8|LINE|L1	280840	NM_025602	52713	Mm.339224	NM_025602		Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding
chipseq_peak_8986	chr3	84951245	84953404	+	0	NA	5' UTR (NM_080428, exon 1 of 11)	5' UTR (NM_080428, exon 1 of 11)	113	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding
chipseq_peak_7226	chr19	34345928	34346304	+	0	NA	Intergenic	Intergenic	55457	NM_001146708	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding
chipseq_peak_8919	chr3	79884823	79885082	+	0	NA	promoter-TSS (NM_133187)	promoter-TSS (NM_133187)	-978	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
chipseq_peak_9100	chr3	116015963	116016509	+	0	NA	intron (NM_021388, intron 2 of 4)	intron (NM_021388, intron 2 of 4)	7939	NM_001163514	58193	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding
chipseq_peak_1181	chr1	189074414	189075297	+	0	NA	Intergenic	Intergenic	-67015	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
chipseq_peak_438	chr1	62215689	62216901	+	0	NA	intron (NM_001081050, intron 12 of 22)	intron (NM_001081050, intron 12 of 22)	-487022	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding
chipseq_peak_2267	chr11	38069007	38070006	+	0	NA	Intergenic	Intergenic	410517	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	OTTMUSG00000005422	predicted gene 12128	ncRNA
chipseq_peak_11915	chr6	135386898	135387520	+	0	NA	Intergenic	Intergenic	19716	NM_001288627	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding
chipseq_peak_5030	chr15	42800510	42801693	+	0	NA	Intergenic	Intergenic	-124124	NM_009640	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
chipseq_peak_7603	chr2	43792730	43793856	+	0	NA	intron (NM_001301832, intron 2 of 14)	intron (NM_001301832, intron 2 of 14)	44469	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_491	chr1	70810768	70811700	+	0	NA	intron (NM_177164, intron 3 of 3)	intron (NM_177164, intron 3 of 3)	85519	NM_001310658	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
chipseq_peak_8435	chr3	7424446	7425315	+	0	NA	intron (NM_008862, intron 1 of 2)	intron (NM_008862, intron 1 of 2)	58276	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding
chipseq_peak_4893	chr15	22221248	22222552	+	0	NA	Intergenic	Intergenic	493084	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding
chipseq_peak_13802	chr9	98130648	98131298	+	0	NA	Intergenic	Intergenic	-97806	NM_022319	64085	Mm.440903	NM_022319	ENSMUSG00000032452	Clstn2	2900042C18Rik|AI448973|CSTN2|Cs2|Cst-2|mKIAA4134	calsyntenin 2	protein-coding
chipseq_peak_3313	chr12	99473753	99474455	+	0	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-24030	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding
chipseq_peak_1306	chr10	16802179	16802506	+	0	NA	Intergenic	Lx8|LINE|L1	293440	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA
chipseq_peak_4944	chr15	29051876	29053073	+	0	NA	Intergenic	Intergenic	848708	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
chipseq_peak_1102	chr1	177140603	177141903	+	0	NA	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	107514	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_13353	chr9	24036353	24037159	+	0	NA	Intergenic	L1MA4|LINE|L1	-61262	NM_175678	319239	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding
chipseq_peak_12397	chr7	97079038	97079888	+	0	NA	Intergenic	Intergenic	-2288	NM_001162477	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding
chipseq_peak_11735	chr6	101223516	101224760	+	0	NA	intron (NM_018884, intron 3 of 9)	intron (NM_018884, intron 3 of 9)	153759	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
chipseq_peak_1371	chr10	27040275	27042492	+	0	NA	intron (NM_008481, intron 46 of 63)	intron (NM_008481, intron 46 of 63)	268871	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
chipseq_peak_11679	chr6	96244287	96244774	+	0	NA	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	-78325	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo
chipseq_peak_13938	chr9	117013290	117013696	+	0	NA	intron (NM_001172122, intron 3 of 13)	MER21B|LTR|ERVL	238990	NM_178660	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
chipseq_peak_6481	chr17	83938721	83939085	+	0	NA	Intergenic	Intergenic	-59649	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA
chipseq_peak_5732	chr16	49432226	49432757	+	0	NA	Intergenic	MIR|SINE|MIR	-266803	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding
chipseq_peak_5279	chr15	68797476	68797783	+	0	NA	Intergenic	L2c|LINE|L2	-130791	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
chipseq_peak_912	chr1	147765915	147766454	+	0	NA	Intergenic	Intergenic	1268497	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
chipseq_peak_2842	chr12	35896369	35896832	+	0	NA	Intergenic	Intergenic	-29021	NM_207531	403205	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding
chipseq_peak_7521	chr2	29389130	29389443	+	0	NA	intron (NM_001290489, intron 1 of 6)	intron (NM_001290489, intron 1 of 6)	10772	NM_001290489	68975	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding
chipseq_peak_10986	chr5	126238229	126238517	+	0	NA	Intergenic	Intergenic	705955	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding
chipseq_peak_8521	chr3	23216668	23217177	+	0	NA	Intergenic	L1MA6|LINE|L1	965552	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA
chipseq_peak_5967	chr16	74005816	74006585	+	0	NA	intron (NM_175549, intron 6 of 27)	intron (NM_175549, intron 6 of 27)	335867	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_3594	chr13	46038838	46040475	+	0	NA	Intergenic	Intergenic	-74665	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding
chipseq_peak_6721	chr18	31294559	31295169	+	0	NA	intron (NM_009065, intron 1 of 4)	RLTR21|LTR|ERVK	22264	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
chipseq_peak_14083	chrX	137926635	137927182	+	0	NA	intron (NM_030688, intron 2 of 10)	intron (NM_030688, intron 2 of 10)	282672	NM_026469	67944	Mm.443280	NM_026469	ENSMUSG00000071686	Tex13a	1700025D03Rik	testis expressed 13A	protein-coding
chipseq_peak_10	chr1	6825233	6825866	+	0	NA	intron (NM_173868, intron 11 of 21)	intron (NM_173868, intron 11 of 21)	95498	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
chipseq_peak_2133	chr11	11245428	11245773	+	0	NA	intron (NM_177033, intron 3 of 3)	intron (NM_177033, intron 3 of 3)	131584	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding
chipseq_peak_11452	chr6	46398926	46399814	+	0	NA	intron (NM_001004357, intron 11 of 23)	intron (NM_001004357, intron 11 of 23)	-845026	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_3898	chr13	93510460	93511700	+	0	NA	Intergenic	Intergenic	-11272	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding
chipseq_peak_4695	chr14	115416469	115416958	+	0	NA	intron (NM_175500, intron 4 of 7)	intron (NM_175500, intron 4 of 7)	-7161	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA
chipseq_peak_10360	chr5	22853499	22853840	+	0	NA	intron (NM_001081231, intron 1 of 3)	intron (NM_001081231, intron 1 of 3)	-106785	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA
chipseq_peak_6330	chr17	59369619	59369947	+	0	NA	Intergenic	Intergenic	-356461	NM_026497	67993	Mm.36507	NM_026497		Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
chipseq_peak_2417	chr11	72514990	72515336	+	0	NA	intron (NM_029932, intron 8 of 11)	HAL1b|LINE|L1	-25243	NM_153060	216892	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding
chipseq_peak_11762	chr6	103352492	103352774	+	0	NA	Intergenic	Intergenic	-158243	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_8614	chr3	38908209	38909598	+	0	NA	intron (NM_183221, intron 1 of 16)	intron (NM_183221, intron 1 of 16)	21963	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT tumor suppressor homolog 4 (Drosophila)	protein-coding
chipseq_peak_9108	chr3	117007277	117007667	+	0	NA	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-38520	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding
chipseq_peak_6388	chr17	68642562	68642977	+	0	NA	intron (NM_177278, intron 16 of 20)	intron (NM_177278, intron 16 of 20)	-194367	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding
chipseq_peak_7493	chr2	19945266	19945772	+	0	NA	Intergenic	Intergenic	287457	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding
chipseq_peak_12360	chr7	92384111	92384592	+	0	NA	intron (NM_011807, intron 15 of 22)	intron (NM_011807, intron 15 of 22)	149381	NM_001243047	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_5479	chr16	6113528	6114381	+	0	NA	intron (NM_021477, intron 1 of 16)	intron (NM_021477, intron 1 of 16)	138367	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA
chipseq_peak_13031	chr8	82331705	82332151	+	0	NA	exon (NM_008357, exon 8 of 8)	exon (NM_008357, exon 8 of 8)	70658	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding
chipseq_peak_11413	chr6	41256410	41257436	+	0	NA	Intergenic	Intergenic	-45349	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding
chipseq_peak_11496	chr6	51846974	51850909	+	0	NA	Intergenic	Intergenic	163608	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding
chipseq_peak_756	chr1	124705951	124706643	+	0	NA	Intergenic	Intergenic	-660738	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding
chipseq_peak_2571	chr11	108757212	108758240	+	0	NA	exon (NM_029606, exon 24 of 28)	exon (NM_029606, exon 24 of 28)	75108	NM_029586	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding
chipseq_peak_6552	chr17	93762475	93762779	+	0	NA	Intergenic	Intergenic	563459	NM_001315504	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
chipseq_peak_583	chr1	84386644	84387116	+	0	NA	intron (NM_152915, intron 11 of 12)	intron (NM_152915, intron 11 of 12)	-102235	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding
chipseq_peak_8687	chr3	50261402	50261766	+	0	NA	Intergenic	Intergenic	182029	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
chipseq_peak_10487	chr5	49639663	49640332	+	0	NA	Intergenic	Intergenic	-354338	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
chipseq_peak_3890	chr13	92999780	93000292	+	0	NA	Intergenic	Intergenic	-73268	NR_036451	100502942	Mm.441946	NM_177623		Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA
chipseq_peak_508	chr1	71848670	71849050	+	0	NA	Intergenic	L1MC3|LINE|L1	-39252	NR_027659	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA
chipseq_peak_754	chr1	124113322	124114166	+	0	NA	Intergenic	HAL1ME|LINE|L1	-68185	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding
chipseq_peak_6323	chr17	55628079	55629131	+	0	NA	Intergenic	L1MA4|LINE|L1	-3933	NM_001104582	383258	Mm.461682	NM_001104582	ENSMUSG00000091504	Vmn2r118	EG383258|EG668547|Vmn2r119	vomeronasal 2, receptor 118	protein-coding
chipseq_peak_7471	chr2	14312577	14313196	+	0	NA	intron (NM_008625, intron 21 of 29)	intron (NM_008625, intron 21 of 29)	51883	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA
chipseq_peak_4676	chr14	114053508	114054088	+	0	NA	Intergenic	Intergenic	-778167	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_8271	chr2	141946297	141946828	+	0	NA	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	954902	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_2392	chr11	67884452	67886070	+	0	NA	intron (NM_001291049, intron 8 of 14)	intron (NM_001291049, intron 8 of 14)	36892	NM_001291049	216835	Mm.158885	NM_173754	ENSMUSG00000020905	Usp43	-	ubiquitin specific peptidase 43	protein-coding
chipseq_peak_1493	chr10	40774969	40775353	+	0	NA	intron (NM_177793, intron 4 of 4)	intron (NM_177793, intron 4 of 4)	91879	NM_177793	327747	Mm.80407	NM_177793	ENSMUSG00000045555	Mettl24	9030224M15Rik	methyltransferase like 24	protein-coding
chipseq_peak_192	chr1	32887623	32888203	+	0	NA	Intergenic	Intergenic	-340620	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding
chipseq_peak_729	chr1	116192189	116192743	+	0	NA	intron (NM_001077425, intron 10 of 23)	intron (NM_001077425, intron 10 of 23)	507329	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_3218	chr12	81801042	81801407	+	0	NA	Intergenic	Intergenic	-20054	NM_177395	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding
chipseq_peak_9530	chr4	13948920	13949426	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	164391	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
chipseq_peak_7577	chr2	41669025	41670237	+	0	NA	intron (NM_053011, intron 7 of 90)	intron (NM_053011, intron 7 of 90)	777937	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
chipseq_peak_5890	chr16	67613256	67614349	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	7106	NM_001145977	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
chipseq_peak_2055	chr10	122990043	122991393	+	0	NA	Intergenic	Intergenic	-4994	NR_029527	387251		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA
chipseq_peak_4163	chr14	16136270	16136527	+	0	NA	Intergenic	Intergenic	-112916	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding
chipseq_peak_9131	chr3	117853715	117854746	+	0	NA	intron (NM_001190156, intron 1 of 7)	intron (NM_001190156, intron 1 of 7)	14706	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_613	chr1	94136555	94137415	+	0	NA	Intergenic	Intergenic	-84432	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding
chipseq_peak_9490	chr4	9693597	9694446	+	0	NA	Intergenic	Intergenic	-24677	NM_001290367	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding
chipseq_peak_5007	chr15	39361138	39361347	+	0	NA	intron (NM_001256382, intron 3 of 26)	intron (NM_001256382, intron 3 of 26)	162956	NM_053271	116838	Mm.309296	NM_053271		Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding
chipseq_peak_8060	chr2	107537412	107537726	+	0	NA	Intergenic	MIR|SINE|MIR	246980	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_4542	chr14	93082862	93084946	+	0	NA	intron (NM_001271800, intron 2 of 2)	intron (NM_001271800, intron 2 of 2)	804984	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_3138	chr12	71821671	71822115	+	0	NA	Intergenic	AmnSINE1|SINE|Deu	-9175	NM_026102	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding
chipseq_peak_9721	chr4	35352578	35352981	+	0	NA	Intergenic	Intergenic	-126899	NM_001081343	73205	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585	RIKEN cDNA 3110043O21 gene	protein-coding
chipseq_peak_5622	chr16	38044398	38044992	+	0	NA	intron (NR_040565, intron 3 of 3)	intron (NR_040565, intron 3 of 3)	27372	NR_040565	75175	Mm.399335	NR_040565		4930542C21Rik	-	RIKEN cDNA 4930542C21 gene	ncRNA
chipseq_peak_1134	chr1	179436225	179438163	+	0	NA	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	80809	NM_027188	69726	Mm.222338	NM_027188		Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding
chipseq_peak_6864	chr18	55190401	55190941	+	0	NA	Intergenic	Intergenic	-200491	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_4748	chr14	121151915	121152427	+	0	NA	intron (NM_134082, intron 2 of 26)	intron (NM_134082, intron 2 of 26)	116597	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding
chipseq_peak_4901	chr15	22916581	22917219	+	0	NA	Intergenic	Intergenic	-119563	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_13318	chr9	14705113	14705655	+	0	NA	intron (NM_177905, intron 16 of 18)	intron (NM_177905, intron 16 of 18)	35349	NM_177905	330890	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding
chipseq_peak_1075	chr1	176877344	176879649	+	0	NA	intron (NM_029756, intron 12 of 17)	intron (NM_029756, intron 12 of 17)	-42363	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
chipseq_peak_9050	chr3	104283797	104284354	+	0	NA	Intergenic	Intergenic	-63669	NM_001159354	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
chipseq_peak_529	chr1	75896426	75897096	+	0	NA	Intergenic	Intergenic	350495	NM_009208	20536	Mm.5053	NM_009208		Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding
chipseq_peak_12086	chr7	49244061	49244470	+	0	NA	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-1924	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
chipseq_peak_717	chr1	113767530	113768636	+	0	NA	Intergenic	Intergenic	-1903165	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
chipseq_peak_12061	chr7	36476431	36477297	+	0	NA	Intergenic	Intergenic	-221254	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding
chipseq_peak_4164	chr14	16167152	16168041	+	0	NA	Intergenic	Intergenic	-81718	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding
chipseq_peak_7908	chr2	76628919	76629315	+	0	NA	TTS (NM_011871)	TTS (NM_011871)	18877	NM_011871	23992	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding
chipseq_peak_1761	chr10	89225622	89226743	+	0	NA	intron (NR_102339, intron 1 of 26)	intron (NR_102339, intron 1 of 26)	31608	NM_001277188	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding
chipseq_peak_8018	chr2	98901601	98902360	+	0	NA	Intergenic	Intergenic	1434323	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
chipseq_peak_11559	chr6	62365715	62366724	+	0	NA	intron (NM_001164316, intron 10 of 10)	intron (NM_001164316, intron 10 of 10)	-890638	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
chipseq_peak_1887	chr10	101516962	101517720	+	0	NA	Intergenic	Intergenic	-164146	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
chipseq_peak_3613	chr13	46907005	46907438	+	0	NA	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	22497	NM_010617	16553	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding
chipseq_peak_3850	chr13	89048690	89049202	+	0	NA	intron (NM_010103, intron 3 of 9)	intron (NM_010103, intron 3 of 9)	227474	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding
chipseq_peak_6872	chr18	55507670	55508321	+	0	NA	Intergenic	Intergenic	-517815	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_979	chr1	160294854	160295279	+	0	NA	TTS (NR_035448)	TTS (NR_035448)	906	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA
chipseq_peak_12965	chr8	66441038	66441478	+	0	NA	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	45249	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16 homolog (S. cerevisiae)	protein-coding
chipseq_peak_8581	chr3	32053660	32054199	+	0	NA	intron (NM_028231, intron 2 of 5)	intron (NM_028231, intron 2 of 5)	151226	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding
chipseq_peak_9547	chr4	15304646	15305104	+	0	NA	Intergenic	Intergenic	39055	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding
chipseq_peak_11806	chr6	106431591	106432456	+	0	NA	intron (NM_173004, intron 7 of 19)	intron (NM_173004, intron 7 of 19)	313258	NM_001109751	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding
chipseq_peak_8067	chr2	108030600	108031144	+	0	NA	Intergenic	Intergenic	740283	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_1560	chr10	52760513	52760861	+	0	NA	intron (NM_178675, intron 1 of 7)	intron (NM_178675, intron 1 of 7)	70186	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
chipseq_peak_8160	chr2	128529949	128530513	+	0	NA	Intergenic	L1MD2|LINE|L1	-62110	NM_001310641	241634	Mm.297682	NM_001310641		Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding
chipseq_peak_9168	chr3	120617931	120618940	+	0	NA	intron (NR_130170, intron 11 of 18)	intron (NR_130170, intron 11 of 18)	268297	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_11212	chr6	14185742	14187191	+	0	NA	Intergenic	Intergenic	314897	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
chipseq_peak_12829	chr8	48526998	48528064	+	0	NA	intron (NM_011857, intron 2 of 28)	intron (NM_011857, intron 2 of 28)	147159	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
chipseq_peak_7176	chr19	27001535	27001814	+	0	NA	Intergenic	Intergenic	115749	NM_001033407	329047	Mm.293289	NM_001033407	ENSMUSG00000074913	Gm815	-	predicted gene 815	protein-coding
chipseq_peak_5667	chr16	42073363	42073984	+	0	NA	intron (NM_175548, intron 3 of 5)	intron (NM_175548, intron 3 of 5)	229796	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
chipseq_peak_6468	chr17	82657407	82659961	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	419541	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
chipseq_peak_3205	chr12	78685614	78685999	+	0	NA	Intergenic	Intergenic	-5729	NM_027597	70897	Mm.56514	NM_027597	ENSMUSG00000056987	Fam71d	4921509E07Rik|4930516C23Rik|GARI-L2	family with sequence similarity 71, member D	protein-coding
chipseq_peak_3230	chr12	82671501	82672205	+	0	NA	intron (NM_001310478, intron 2 of 17)	intron (NM_001310478, intron 2 of 17)	54354	NM_001282061	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding
chipseq_peak_7410	chr2	7709653	7711763	+	0	NA	Intergenic	Intergenic	-314510	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_8185	chr2	132607132	132607660	+	0	NA	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	9200	NR_033468	767814	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA
chipseq_peak_2757	chr12	26577216	26578693	+	0	NA	Intergenic	Intergenic	108739	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
chipseq_peak_10627	chr5	69542632	69542932	+	0	NA	promoter-TSS (NM_023784)	promoter-TSS (NM_023784)	-135	NM_023784	75581	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding
chipseq_peak_3867	chr13	90515943	90516768	+	0	NA	Intergenic	Intergenic	389000	NM_001145879	435376	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
chipseq_peak_7903	chr2	76266758	76267660	+	0	NA	intron (NM_001081033, intron 2 of 19)	intron (NM_001081033, intron 2 of 19)	71444	NM_001081033	241489	Mm.246613	NM_001081033		Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding
chipseq_peak_10337	chr5	19241835	19242175	+	0	NA	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	14959	NM_001170746	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
chipseq_peak_1480	chr10	39512593	39513032	+	0	NA	intron (NM_008054, intron 4 of 13)	PB1D7|SINE|Alu	-100122	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding
chipseq_peak_2659	chr12	7160034	7162181	+	0	NA	Intergenic	Intergenic	219223	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_604	chr1	90732287	90733186	+	0	NA	Intergenic	RSINE1|SINE|B4	111235	NM_001243008	12835	Mm.7562	NM_009935	ENSMUSG00000048126	Col6a3	AI507288|Col6a-3	collagen, type VI, alpha 3	protein-coding
chipseq_peak_7080	chr19	12145254	12145944	+	0	NA	intron (NR_030566, intron 2 of 3)	intron (NR_030566, intron 2 of 3)	-24925	NM_146682	258677	Mm.261576	NM_146682	ENSMUSG00000067522	Olfr76	MOR215-3|V5	olfactory receptor 76	protein-coding
chipseq_peak_3836	chr13	84904339	84906552	+	0	NA	Intergenic	Intergenic	-284032	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
chipseq_peak_11035	chr5	132135812	132136326	+	0	NA	intron (NM_177047, intron 2 of 18)	intron (NM_177047, intron 2 of 18)	255800	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_13072	chr8	90294074	90294399	+	0	NA	intron (NM_172913, intron 1 of 6)	intron (NM_172913, intron 1 of 6)	54016	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
chipseq_peak_8215	chr2	136666885	136667365	+	0	NA	Intergenic	Intergenic	-46325	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding
chipseq_peak_13203	chr8	113168252	113169195	+	0	NA	Intergenic	Intergenic	101461	NR_033584	791378	Mm.350576	NR_033584		Gm10280	ENSMUSG00000069883	predicted gene 10280	ncRNA
chipseq_peak_13998	chrX	51606238	51606920	+	0	NA	intron (NM_001077202, intron 2 of 4)	intron (NM_001077202, intron 2 of 4)	73898	NM_015819	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding
chipseq_peak_4923	chr15	25904552	25905511	+	0	NA	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-28521	NM_001277318	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding
chipseq_peak_8059	chr2	107210111	107210859	+	0	NA	Intergenic	Intergenic	-80104	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_3273	chr12	93165990	93166513	+	0	NA	Intergenic	L1MA5|LINE|L1	278572	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA
chipseq_peak_9228	chr3	129016846	129017186	+	0	NA	Intergenic	MER115|DNA|hAT-Tip100	-182862	NM_001286942	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding
chipseq_peak_5980	chr16	74464085	74465588	+	0	NA	Intergenic	Intergenic	-53924	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
chipseq_peak_10590	chr5	64862337	64862672	+	0	NA	Intergenic	Intergenic	58981	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding
chipseq_peak_12558	chr7	135470266	135470661	+	0	NA	Intergenic	Intergenic	58191	NM_178669	212070	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding
chipseq_peak_5001	chr15	37683875	37684441	+	0	NA	intron (NM_134094, intron 1 of 6)	intron (NM_134094, intron 1 of 6)	107842	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding
chipseq_peak_11279	chr6	22833927	22835137	+	0	NA	Intergenic	Intergenic	-40970	NM_001081306	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding
chipseq_peak_4498	chr14	86832959	86835197	+	0	NA	intron (NM_019670, intron 23 of 27)	intron (NM_019670, intron 23 of 27)	307036	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
chipseq_peak_3511	chr13	29370904	29371965	+	0	NA	intron (NR_131896, intron 13 of 16)	intron (NR_131896, intron 13 of 16)	355179	NR_045073	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
chipseq_peak_4886	chr15	21222592	21223730	+	0	NA	intron (NM_001008420, intron 1 of 11)	intron (NM_001008420, intron 1 of 11)	111709	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
chipseq_peak_445	chr1	63770190	63771063	+	0	NA	Intergenic	Intergenic	-1359	NM_001256158	74426	Mm.159197	NM_001256158	ENSMUSG00000025961	4933402D24Rik	-	RIKEN cDNA 4933402D24 gene	protein-coding
chipseq_peak_7054	chr18	89076324	89076597	+	0	NA	intron (NM_175542, intron 34 of 48)	intron (NM_175542, intron 34 of 48)	104430	NR_105777	102466633		NR_105777	ENSMUSG00000098676	Mir6359	Gm27328|mmu-mir-6359	microRNA 6359	ncRNA
chipseq_peak_10715	chr5	81269731	81270022	+	0	NA	intron (NM_198702, intron 3 of 27)	intron (NM_198702, intron 3 of 27)	248283	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_3627	chr13	51602962	51603756	+	0	NA	Intergenic	Intergenic	-36275	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding
chipseq_peak_6855	chr18	54611461	54612796	+	0	NA	intron (NR_045400, intron 1 of 2)	intron (NR_045400, intron 1 of 2)	384	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA
chipseq_peak_12872	chr8	54817424	54818449	+	0	NA	intron (NM_001253754, intron 1 of 6)	intron (NM_001253754, intron 1 of 6)	38502	NM_001253754	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
chipseq_peak_5382	chr15	91377014	91377804	+	0	NA	intron (NM_001033633, intron 4 of 9)	intron (NM_001033633, intron 4 of 9)	-185602	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding
chipseq_peak_13666	chr9	69505590	69505974	+	0	NA	Intergenic	Intergenic	48838	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA
chipseq_peak_4113	chr13	117837117	117837921	+	0	NA	intron (NM_010408, intron 3 of 7)	intron (NM_010408, intron 3 of 7)	-117508	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
chipseq_peak_10241	chr5	4349930	4350228	+	0	NA	Intergenic	Intergenic	157712	NM_001042670	208595	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	ENSMUSG00000053178|Gm9897	mitochondrial transcription termination factor 1b	protein-coding
chipseq_peak_3932	chr13	97823993	97825194	+	0	NA	Intergenic	Intergenic	264593	NR_046157	328314	Mm.138047	NR_046157		Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA
chipseq_peak_4774	chr15	8030277	8031283	+	0	NA	intron (NM_001081402, intron 8 of 17)	intron (NM_001081402, intron 8 of 17)	68429	NM_001081402	545085	Mm.321312	NM_198413	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding
chipseq_peak_14071	chrX	130103159	130103639	+	0	NA	intron (NM_172493, intron 21 of 26)	intron (NM_172493, intron 21 of 26)	353657	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding
chipseq_peak_13069	chr8	90032399	90032995	+	0	NA	Intergenic	Intergenic	315555	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
chipseq_peak_2873	chr12	39048233	39049050	+	0	NA	Intergenic	Intergenic	264930	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
chipseq_peak_3552	chr13	42656199	42657217	+	0	NA	Intergenic	Intergenic	-24091	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding
chipseq_peak_2868	chr12	38400082	38400434	+	0	NA	intron (NM_178681, intron 20 of 24)	intron (NM_178681, intron 20 of 24)	214263	NR_045943	73867	Mm.78933	NR_045943		4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA
chipseq_peak_11186	chr6	12864851	12865291	+	0	NA	Intergenic	Intergenic	-115818	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
chipseq_peak_9124	chr3	117739807	117740300	+	0	NA	Intergenic	Intergenic	128883	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
chipseq_peak_4693	chr14	115177069	115180829	+	0	NA	intron (NM_175500, intron 2 of 7)	MIRc|SINE|MIR	86734	NM_175500	103978	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding
chipseq_peak_13810	chr9	101251767	101252710	+	0	NA	promoter-TSS (NM_001161362)	promoter-TSS (NM_001161362)	-406	NM_001161362	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
chipseq_peak_10285	chr5	13270919	13271867	+	0	NA	Intergenic	Intergenic	-125391	NM_001243072	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
chipseq_peak_4657	chr14	111672937	111673458	+	0	NA	Intergenic	Intergenic	-1918	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding
chipseq_peak_9612	chr4	23986167	23986453	+	0	NA	Intergenic	Intergenic	-510152	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_11590	chr6	74371919	74372449	+	0	NA	Intergenic	Intergenic	-901163	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA
chipseq_peak_3685	chr13	69236217	69236876	+	0	NA	Intergenic	Intergenic	-237005	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding
chipseq_peak_11113	chr5	148964921	148966312	+	0	NA	Intergenic	Intergenic	15366	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA
chipseq_peak_9570	chr4	18170896	18171257	+	0	NA	Intergenic	Intergenic	317594	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
chipseq_peak_8064	chr2	107925187	107925519	+	0	NA	Intergenic	Intergenic	634764	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_12844	chr8	49555878	49556444	+	0	NA	Intergenic	Intergenic	-811951	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
chipseq_peak_12992	chr8	72205876	72206346	+	0	NA	intron (NM_001080812, intron 3 of 4)	L2c|LINE|L2	6726	NM_001080812	234421	Mm.211247	NM_001080812	ENSMUSG00000074240	Cib3	C730014M21Rik|Gm1107|KIP3	calcium and integrin binding family member 3	protein-coding
chipseq_peak_3863	chr13	90324768	90325861	+	0	NA	Intergenic	Intergenic	235647	NM_025335	66074	Mm.241387	NM_025335		Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding
chipseq_peak_6079	chr16	85002045	85002465	+	0	NA	intron (NM_007471, intron 11 of 15)	intron (NM_007471, intron 11 of 15)	30044	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA
chipseq_peak_1957	chr10	109003158	109003701	+	0	NA	intron (NM_001252341, intron 1 of 11)	intron (NM_001252341, intron 1 of 11)	7546	NM_001252341	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding
chipseq_peak_5372	chr15	89429890	89430379	+	0	NA	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-207	NR_037153	12651	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding
chipseq_peak_11534	chr6	56904275	56904706	+	0	NA	intron (NM_026004, intron 1 of 8)	intron (NM_026004, intron 1 of 8)	-2604	NM_001252374	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding
chipseq_peak_556	chr1	79657303	79657903	+	0	NA	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	14369	NM_183027	252903	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding
chipseq_peak_12051	chr7	30169235	30170306	+	0	NA	promoter-TSS (NM_011980)	promoter-TSS (NM_011980)	-43	NM_011980	26465	Mm.446516	NM_011980	ENSMUSG00000037029	Zfp146	OZF|Znf146	zinc finger protein 146	protein-coding
chipseq_peak_13286	chr9	6108060	6109044	+	0	NA	Intergenic	B3|SINE|B2	-60060	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding
chipseq_peak_3497	chr13	28709948	28710640	+	0	NA	TTS (NR_105787)	TTS (NR_105787)	579	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA
chipseq_peak_1506	chr10	43420519	43421266	+	0	NA	intron (NM_001168289, intron 7 of 7)	intron (NM_001168289, intron 7 of 7)	-58248	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding
chipseq_peak_10554	chr5	60777422	60777935	+	0	NA	Intergenic	Intergenic	-791676	NR_040683	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA
chipseq_peak_6845	chr18	54174912	54175452	+	0	NA	Intergenic	Intergenic	-247113	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA
chipseq_peak_1795	chr10	92596444	92596709	+	0	NA	Intergenic	Intergenic	125842	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding
chipseq_peak_13443	chr9	34411773	34413248	+	0	NA	Intergenic	L1ME4a|LINE|L1	-76221	NM_026324	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding
chipseq_peak_10688	chr5	76945684	76946033	+	0	NA	intron (NM_172146, intron 1 of 10)	intron (NM_172146, intron 1 of 10)	-5553	NM_025939	67054	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding
chipseq_peak_2110	chr10	128611476	128612891	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	14323	NM_013765	27370	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding
chipseq_peak_7055	chr18	89458995	89459518	+	0	NA	intron (NM_001039173, intron 5 of 7)	intron (NM_001039173, intron 5 of 7)	261829	NM_178687	225825	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding
chipseq_peak_9016	chr3	89696173	89696767	+	0	NA	Intergenic	Intergenic	-18552	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding
chipseq_peak_3099	chr12	67862643	67863425	+	0	NA	Intergenic	Intergenic	-193763	NR_033146	100316870	Mm.379794	NR_033146		Gm17821	-	DDB1 and CUL4 associated factor 5 pseudogene	pseudo
chipseq_peak_1063	chr1	174895625	174896029	+	0	NA	intron (NM_011825, intron 1 of 1)	intron (NM_011825, intron 1 of 1)	25992	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	protein-coding
chipseq_peak_12908	chr8	57887460	57887894	+	0	NA	intron (NM_175032, intron 6 of 11)	intron (NM_175032, intron 6 of 11)	-234622	NM_001167981	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
chipseq_peak_7083	chr19	12372456	12375140	+	0	NA	intron (NR_030566, intron 3 of 3)	intron (NR_030566, intron 3 of 3)	-20467	NM_146684	258679	Mm.271520	NM_146684	ENSMUSG00000046650	Olfr1440	MOR215-1	olfactory receptor 1440	protein-coding
chipseq_peak_5331	chr15	79606228	79606925	+	0	NA	Intergenic	Intergenic	-1467	NM_001278226	13404	Mm.2524	NM_010059	ENSMUSG00000022429	Dmc1	Dmc1h|Lim15|Mei11|sgdp	DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination	protein-coding
chipseq_peak_12212	chr7	73584105	73585234	+	0	NA	Intergenic	B3|SINE|B2	-26274	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000098496	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA
chipseq_peak_11517	chr6	54890986	54891612	+	0	NA	Intergenic	Intergenic	74383	NM_199143	387524	Mm.286149	NM_199143		Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding
chipseq_peak_10681	chr5	75414168	75414565	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-160621	NM_001122733	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	kit oncogene	protein-coding
chipseq_peak_11217	chr6	14504202	14504512	+	0	NA	Intergenic	Intergenic	250917	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding
chipseq_peak_3936	chr13	98004647	98005359	+	0	NA	intron (NM_012026, intron 9 of 35)	intron (NM_012026, intron 9 of 35)	201162	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
chipseq_peak_7594	chr2	43636006	43636840	+	0	NA	3' UTR (NM_001289594, exon 11 of 11)	3' UTR (NM_001289594, exon 11 of 11)	81098	NM_001289594	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding
chipseq_peak_11855	chr6	111827791	111828353	+	0	NA	Intergenic	L1MA5|LINE|L1	-382636	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA
chipseq_peak_9659	chr4	28769244	28769552	+	0	NA	Intergenic	L1ME1|LINE|L1	-43733	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_11928	chr6	136941885	136942716	+	0	NA	promoter-TSS (NM_001301305)	promoter-TSS (NM_001301305)	-401	NM_001301309	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding
chipseq_peak_7271	chr19	47211572	47212362	+	0	NA	intron (NM_021360, intron 1 of 5)	L2a|LINE|L2	-16876	NM_001163480	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding
chipseq_peak_14151	chrY	90732197	90732562	+	0	NA	Intergenic	Intergenic	-53063	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding
chipseq_peak_9644	chr4	26792456	26794013	+	0	NA	Intergenic	Intergenic	-87785	NR_040656	75360	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA
chipseq_peak_5597	chr16	33150875	33152111	+	0	NA	Intergenic	Intergenic	-33578	NM_176840	106326	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding
chipseq_peak_11961	chr6	140100089	140100556	+	0	NA	Intergenic	Intergenic	58797	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding
chipseq_peak_11147	chr6	7862392	7862730	+	0	NA	intron (NM_052993, intron 1 of 3)	intron (NM_052993, intron 1 of 3)	17337	NM_052993	94192	Mm.102752	NM_052993		C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding
chipseq_peak_12697	chr8	28770428	28771030	+	0	NA	intron (NM_153135, intron 4 of 17)	intron (NM_153135, intron 4 of 17)	448907	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
chipseq_peak_2094	chr10	126161540	126162363	+	0	NA	Intergenic	Intergenic	195732	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
chipseq_peak_10839	chr5	100180459	100181431	+	0	NA	Intergenic	L1MC5|LINE|L1	-21137	NM_182841	231503	Mm.99790	NM_182841	ENSMUSG00000050640	Tmem150c	-	transmembrane protein 150C	protein-coding
chipseq_peak_8434	chr3	7306781	7307099	+	0	NA	Intergenic	Intergenic	-59664	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding
chipseq_peak_11017	chr5	131533838	131534255	+	0	NA	intron (NM_177047, intron 5 of 18)	intron (NM_177047, intron 5 of 18)	-226524	NM_145218	212996	Mm.299204	NM_145218		Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding
chipseq_peak_9406	chr3	154824766	154825242	+	0	NA	intron (NM_177066, intron 23 of 24)	intron (NM_177066, intron 23 of 24)	113871	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
chipseq_peak_6464	chr17	82132524	82133888	+	0	NA	Intergenic	Intergenic	-394819	NM_001112798	20541	Mm.265834	NM_011406		Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
chipseq_peak_877	chr1	142011697	142012142	+	0	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-1355517	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
chipseq_peak_6385	chr17	68439308	68439815	+	0	NA	intron (NM_177278, intron 5 of 20)	intron (NM_177278, intron 5 of 20)	165764	NM_177278	320858	Mm.137356	NM_177278		L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding
chipseq_peak_11495	chr6	51754026	51754648	+	0	NA	Intergenic	Intergenic	209814	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding
chipseq_peak_11136	chr6	5701545	5702531	+	0	NA	Intergenic	L1M2|LINE|L1	-23601	NM_001191025	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding
chipseq_peak_10744	chr5	83826456	83826963	+	0	NA	Intergenic	Intergenic	-471514	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding
chipseq_peak_8907	chr3	78919582	78920218	+	0	NA	Intergenic	Intergenic	224987	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
chipseq_peak_3118	chr12	70062000	70062516	+	0	NA	intron (NM_001286080, intron 6 of 29)	intron (NM_001286080, intron 6 of 29)	40596	NM_001081453	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding
chipseq_peak_4053	chr13	110141018	110141854	+	0	NA	intron (NM_023852, intron 3 of 4)	intron (NM_023852, intron 3 of 4)	138770	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding
chipseq_peak_13111	chr8	98365480	98366140	+	0	NA	Intergenic	Intergenic	-646077	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA
chipseq_peak_498	chr1	71271908	71272369	+	0	NA	intron (NM_175210, intron 39 of 52)	intron (NM_175210, intron 39 of 52)	142772	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
chipseq_peak_4286	chr14	48248788	48249350	+	0	NA	intron (NM_033602, intron 3 of 5)	intron (NM_033602, intron 3 of 5)	50353	NR_003630	624367	Mm.445185	NM_001037921	ENSMUSG00000063885	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_178	chr1	32171423	32176199	+	0	NA	intron (NM_133235, intron 1 of 8)	intron (NM_133235, intron 1 of 8)	1005	NM_133235	170771	Mm.336594	NM_133235		Khdrbs2	6330586C16Rik|Slim1|Slm1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding
chipseq_peak_9662	chr4	28945770	28946174	+	0	NA	intron (NM_001290434, intron 9 of 16)	intron (NM_001290434, intron 9 of 16)	132827	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
chipseq_peak_4124	chr13	119462335	119462677	+	0	NA	promoter-TSS (NM_026127)	promoter-TSS (NM_026127)	-253	NM_026127	67392	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding
chipseq_peak_13546	chr9	51304490	51306625	+	0	NA	intron (NM_027217, intron 2 of 4)	intron (NM_027217, intron 2 of 4)	23360	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding
chipseq_peak_1039	chr1	169895647	169895989	+	0	NA	Intergenic	Intergenic	-33121	NM_001033185	78465	Mm.291078	NM_001033185	ENSMUSG00000070532	Ccdc190	1700084C01Rik	coiled-coil domain containing 190	protein-coding
chipseq_peak_12135	chr7	55315619	55316026	+	0	NA	Intergenic	Intergenic	-452362	NM_001310740	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding
chipseq_peak_6396	chr17	69205590	69205956	+	0	NA	intron (NM_013813, intron 1 of 21)	intron (NM_013813, intron 1 of 21)	48963	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding
chipseq_peak_260	chr1	41423473	41424133	+	0	NA	Intergenic	Intergenic	-242551	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
chipseq_peak_10689	chr5	77035678	77036253	+	0	NA	intron (NM_027970, intron 1 of 8)	intron (NM_027970, intron 1 of 8)	-17102	NR_077218	68246	Mm.319633	NR_077218	ENSMUSG00000086632	1700112J05Rik	1700110A09Rik	RIKEN cDNA 1700112J05 gene	ncRNA
chipseq_peak_3139	chr12	71953945	71955456	+	0	NA	intron (NM_001286452, intron 15 of 24)	intron (NM_001286452, intron 15 of 24)	65157	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding
chipseq_peak_10608	chr5	66809144	66809493	+	0	NA	intron (NM_001001980, intron 1 of 25)	intron (NM_001001980, intron 1 of 25)	63478	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding
chipseq_peak_12085	chr7	49199302	49199966	+	0	NA	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-46555	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
chipseq_peak_7321	chr19	57490507	57490984	+	0	NA	3' UTR (NM_028115, exon 8 of 8)	3' UTR (NM_028115, exon 8 of 8)	-17819	NR_040306	78073	Mm.12411	NR_040306		6720468P15Rik	-	RIKEN cDNA 6720468P15 gene	ncRNA
chipseq_peak_3063	chr12	63258880	63259437	+	0	NA	Intergenic	Intergenic	571371	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA
chipseq_peak_2510	chr11	92472222	92472484	+	0	NA	Intergenic	Intergenic	-626937	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding
chipseq_peak_8730	chr3	54269113	54269669	+	0	NA	intron (NM_016984, intron 4 of 10)	intron (NM_016984, intron 4 of 10)	-91716	NM_001313898	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding
chipseq_peak_11619	chr6	78460101	78461323	+	0	NA	Intergenic	Intergenic	8162	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515	regenerating islet-derived 3 gamma	protein-coding
chipseq_peak_3428	chr13	12308431	12309224	+	0	NA	intron (NM_033268, intron 4 of 20)	intron (NM_033268, intron 4 of 20)	31905	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding
chipseq_peak_13822	chr9	103523779	103525246	+	0	NA	intron (NM_178638, intron 3 of 5)	intron (NM_178638, intron 3 of 5)	-32578	NR_040764	319215	Mm.425597	NR_040764	ENSMUSG00000099616	4932413F04Rik	-	RIKEN cDNA 4932413F04 gene	ncRNA
chipseq_peak_10498	chr5	52023149	52023536	+	0	NA	Intergenic	Intergenic	112675	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA
chipseq_peak_10062	chr4	97610133	97611688	+	0	NA	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-26319	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA
chipseq_peak_10308	chr5	15931609	15932010	+	0	NA	Intergenic	Intergenic	-2882	NM_001110845	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
chipseq_peak_8801	chr3	63196414	63197342	+	0	NA	Intergenic	Intergenic	-98557	NM_001289462	17380	Mm.296022	NM_008604		Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding
chipseq_peak_13957	chr9	122247791	122248725	+	0	NA	intron (NM_133979, intron 11 of 12)	intron (NM_133979, intron 11 of 12)	25770	NR_106185	102465896		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA
chipseq_peak_419	chr1	58190372	58190788	+	0	NA	intron (NM_023617, intron 33 of 34)	intron (NM_023617, intron 33 of 34)	-19817	NM_023631	71872	Mm.244525	NM_023631	ENSMUSG00000038242	Aox4	2310003G12Rik|Aoh2	aldehyde oxidase 4	protein-coding
chipseq_peak_765	chr1	126454153	126455356	+	0	NA	intron (NM_176957, intron 3 of 12)	intron (NM_176957, intron 3 of 12)	38173	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding
chipseq_peak_5373	chr15	90031773	90032195	+	0	NA	Intergenic	Intergenic	-190124	NM_018803	54526	Mm.261601	NM_018803	ENSMUSG00000063260	Syt10	-	synaptotagmin X	protein-coding
chipseq_peak_2521	chr11	97874341	97875040	+	0	NA	intron (NM_001081435, intron 3 of 10)	intron (NM_001081435, intron 3 of 10)	9464	NM_001081435	72973	Mm.245939	NM_001081435		Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding
chipseq_peak_3996	chr13	106405990	106407327	+	0	NA	Intergenic	Intergenic	530257	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding
chipseq_peak_7916	chr2	77758312	77759252	+	0	NA	intron (NM_178723, intron 1 of 9)	intron (NM_178723, intron 1 of 9)	-55510	NM_001113399	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding
chipseq_peak_2396	chr11	68381870	68382291	+	0	NA	intron (NM_008744, intron 2 of 6)	intron (NM_008744, intron 2 of 6)	4746	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding
chipseq_peak_9751	chr4	40071003	40071687	+	0	NA	Intergenic	Intergenic	-71920	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding
chipseq_peak_6383	chr17	68345788	68346295	+	0	NA	intron (NM_177278, intron 2 of 20)	L1M4|LINE|L1	72244	NM_177278	320858	Mm.137356	NM_177278		L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding
chipseq_peak_4996	chr15	37036730	37037363	+	0	NA	Intergenic	Intergenic	-29644	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding
chipseq_peak_1716	chr10	73895539	73896704	+	0	NA	intron (NM_001142735, intron 1 of 32)	intron (NM_001142735, intron 1 of 32)	74254	NM_001142738	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
chipseq_peak_8116	chr2	114739288	114740107	+	0	NA	Intergenic	Intergenic	-84769	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
chipseq_peak_4277	chr14	46421965	46422249	+	0	NA	Intergenic	Intergenic	-31438	NM_001316360	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding
chipseq_peak_154	chr1	29587541	29588702	+	0	NA	Intergenic	Intergenic	166633	NR_105760	102465174		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA
chipseq_peak_13912	chr9	113085257	113085770	+	0	NA	Intergenic	Intergenic	501639	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_12721	chr8	32792692	32793760	+	0	NA	Intergenic	Intergenic	156800	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding
chipseq_peak_994	chr1	163209334	163209886	+	0	NA	Intergenic	Intergenic	104040	NM_001025570	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding
chipseq_peak_11887	chr6	118581021	118582132	+	0	NA	Intergenic	L1M3|LINE|L1	-19320	NM_001081112	232339	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding
chipseq_peak_9179	chr3	122269056	122269698	+	0	NA	Intergenic	Intergenic	-5037	NM_153806	99480	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding
chipseq_peak_9763	chr4	46889063	46889499	+	0	NA	intron (NM_001081141, intron 1 of 18)	intron (NM_001081141, intron 1 of 18)	102433	NM_001081141	242425	Mm.101909	NM_001081141		Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding
chipseq_peak_4394	chr14	69991789	69992358	+	0	NA	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-85372	NM_018781	13655	Mm.103737	NM_018781		Egr3	Pilot	early growth response 3	protein-coding
chipseq_peak_8672	chr3	48579224	48580218	+	0	NA	Intergenic	Intergenic	29379	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo
chipseq_peak_5253	chr15	66558701	66560920	+	0	NA	intron (NM_172514, intron 1 of 9)	intron (NM_172514, intron 1 of 9)	1236	NM_172514	213068	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding
chipseq_peak_5771	chr16	52879619	52880047	+	0	NA	Intergenic	Intergenic	-64089	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA
chipseq_peak_7051	chr18	87854398	87855310	+	0	NA	Intergenic	Intergenic	1039353	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
chipseq_peak_11575	chr6	66299433	66300628	+	0	NA	Intergenic	Intergenic	-235438	NM_019499	56150	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding
chipseq_peak_7597	chr2	43694925	43696290	+	0	NA	Intergenic	Intergenic	-53217	NM_153820	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
chipseq_peak_12641	chr8	12126293	12127752	+	0	NA	Intergenic	Intergenic	-258749	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Gm5607	EG434280	predicted gene 5607	ncRNA
chipseq_peak_853	chr1	140338292	140339850	+	0	NA	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	92814	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding
chipseq_peak_7422	chr2	8031922	8033234	+	0	NA	Intergenic	Intergenic	-636380	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_2962	chr12	50518586	50519091	+	0	NA	intron (NM_008858, intron 1 of 18)	intron (NM_008858, intron 1 of 18)	130385	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_13887	chr9	112235526	112237247	+	0	NA	TTS (NR_015468)	TTS (NR_015468)	-1545	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding
chipseq_peak_11657	chr6	92591646	92592040	+	0	NA	intron (NM_001081146, intron 2 of 8)	LTR48|LTR|ERV1	-24477	NM_001134461	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle homolog 2 (Drosophila)	protein-coding
chipseq_peak_11529	chr6	55814556	55814951	+	0	NA	Intergenic	Intergenic	-22265	NM_001081665	232016	Mm.333084	NM_001081665	ENSMUSG00000037973	Ccdc129	D530004J12Rik|Gm458	coiled-coil domain containing 129	protein-coding
chipseq_peak_879	chr1	142396310	142396778	+	0	NA	Intergenic	Intergenic	-1244153	NM_020025	26878	Mm.285580	NM_020025		B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding
chipseq_peak_13718	chr9	83487861	83489162	+	0	NA	Intergenic	Intergenic	-47384	NM_029434	75782	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding
chipseq_peak_11631	chr6	81323591	81324482	+	0	NA	Intergenic	Intergenic	571627	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA
chipseq_peak_437	chr1	62204977	62205362	+	0	NA	intron (NM_001081050, intron 11 of 22)	intron (NM_001081050, intron 11 of 22)	-498148	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding
chipseq_peak_5650	chr16	41258405	41258865	+	0	NA	Intergenic	Intergenic	-274707	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_1517	chr10	45983578	45984231	+	0	NA	Intergenic	Intergenic	176200	NR_040624	320363	Mm.123343	NR_040624		D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA
chipseq_peak_3676	chr13	60105566	60105974	+	0	NA	intron (NR_046142, intron 1 of 2)	Kanga1b|DNA|TcMar-Tc2	71765	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding
chipseq_peak_5374	chr15	90237801	90238203	+	0	NA	Intergenic	Intergenic	13642	NR_106106	102466838		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA
chipseq_peak_2554	chr11	105507843	105508802	+	0	NA	Intergenic	Intergenic	-51587	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding
chipseq_peak_12344	chr7	91785065	91786809	+	0	NA	intron (NM_011807, intron 3 of 22)	intron (NM_011807, intron 3 of 22)	-276457	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_13414	chr9	29866888	29867413	+	0	NA	intron (NM_172290, intron 1 of 7)	intron (NM_172290, intron 1 of 7)	95979	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_1817	chr10	95457410	95457815	+	0	NA	Intergenic	Intergenic	40237	NR_045338	70523	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA
chipseq_peak_6295	chr17	51789844	51791893	+	0	NA	intron (NM_009122, intron 5 of 10)	intron (NM_009122, intron 5 of 10)	21186	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding
chipseq_peak_7379	chr2	6731287	6732746	+	0	NA	intron (NM_001110229, intron 2 of 14)	intron (NM_001110229, intron 2 of 14)	-10354	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_2106	chr10	128211836	128213015	+	0	NA	promoter-TSS (NM_025716)	promoter-TSS (NM_025716)	-631	NM_025716	66701	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding
chipseq_peak_9488	chr4	9555721	9556817	+	0	NA	intron (NM_023066, intron 13 of 23)	intron (NM_023066, intron 13 of 23)	87448	NM_001177853	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding
chipseq_peak_1100	chr1	177128963	177130229	+	0	NA	intron (NM_011785, intron 2 of 12)	intron (NM_011785, intron 2 of 12)	119171	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_7198	chr19	28587645	28588309	+	0	NA	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-90247	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
chipseq_peak_3007	chr12	56936107	56936979	+	0	NA	intron (NM_172577, intron 1 of 9)	intron (NM_172577, intron 1 of 9)	224100	NM_001167976	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding
chipseq_peak_2538	chr11	101695951	101696495	+	0	NA	Intergenic	Intergenic	30682	NM_025404	80981	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding
chipseq_peak_5260	chr15	66752678	66752995	+	0	NA	intron (NM_009375, intron 35 of 47)	intron (NM_009375, intron 35 of 47)	78993	NM_009192	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding
chipseq_peak_73	chr1	19265541	19266497	+	0	NA	Intergenic	Intergenic	53965	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding
chipseq_peak_12813	chr8	45722072	45722648	+	0	NA	TTS (NR_045739)	TTS (NR_045739)	60367	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777	sorbin and SH3 domain containing 2	protein-coding
chipseq_peak_7359	chr2	4370538	4371190	+	0	NA	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-30112	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding
chipseq_peak_2013	chr10	116009182	116010598	+	0	NA	Intergenic	Intergenic	-8473	NM_011217	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding
chipseq_peak_3624	chr13	49016055	49017079	+	0	NA	Intergenic	Intergenic	48455	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA
chipseq_peak_6435	chr17	76095033	76095843	+	0	NA	Intergenic	Intergenic	234415	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
chipseq_peak_12555	chr7	134130424	134130715	+	0	NA	intron (NM_007400, intron 3 of 22)	L5|LINE|RTE-X	94528	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna|mKIAA4001	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding
chipseq_peak_4592	chr14	101816162	101816912	+	0	NA	intron (NM_201529, intron 3 of 30)	intron (NM_201529, intron 3 of 30)	86609	NM_201529	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding
chipseq_peak_2384	chr11	66028633	66028960	+	0	NA	intron (NM_001099633, intron 33 of 68)	intron (NM_001099633, intron 33 of 68)	139755	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding
chipseq_peak_7814	chr2	62691472	62691707	+	0	NA	exon (NM_145523, exon 8 of 8)	exon (NM_145523, exon 8 of 8)	27262	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding
chipseq_peak_13227	chr8	118585389	118586142	+	0	NA	intron (NM_019707, intron 2 of 13)	intron (NM_019707, intron 2 of 13)	302154	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding
chipseq_peak_11191	chr6	13448838	13449983	+	0	NA	Intergenic	Intergenic	36073	NR_038149	69413	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA
chipseq_peak_9686	chr4	31419212	31419623	+	0	NA	Intergenic	Intergenic	-544690	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_11864	chr6	113923071	113923686	+	0	NA	intron (NM_009723, intron 2 of 21)	L1MD2|LINE|L1	-32002	NM_001036684	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding
chipseq_peak_12906	chr8	57841297	57843946	+	0	NA	intron (NM_175032, intron 8 of 11)	intron (NM_175032, intron 8 of 11)	-189566	NM_001167981	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
chipseq_peak_7832	chr2	65415038	65415777	+	0	NA	Intergenic	Intergenic	-51007	NR_105755	102466151		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA
chipseq_peak_9279	chr3	139169518	139170338	+	0	NA	Intergenic	Intergenic	-35965	NM_198659	381476	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding
chipseq_peak_9445	chr4	4948905	4949666	+	0	NA	Intergenic	Intergenic	-155979	NM_177730	242291	Mm.218889	NM_177730		Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding
chipseq_peak_3675	chr13	60045539	60045911	+	0	NA	intron (NR_046142, intron 1 of 2)	intron (NR_046142, intron 1 of 2)	16014	NR_046142	328263	Mm.123405	NR_046142		A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA
chipseq_peak_4175	chr14	18983859	18984188	+	0	NA	Intergenic	Intergenic	-90396	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding
chipseq_peak_3868	chr13	90553618	90554168	+	0	NA	Intergenic	Intergenic	351462	NM_001145879	435376	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
chipseq_peak_11833	chr6	109277782	109278291	+	0	NA	Intergenic	Intergenic	449395	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
chipseq_peak_9757	chr4	44917835	44919366	+	0	NA	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-62794	NM_001312880	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding
chipseq_peak_11150	chr6	8289381	8289766	+	0	NA	intron (NM_001302353, intron 2 of 4)	intron (NM_001302353, intron 2 of 4)	30285	NM_001302354	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding
chipseq_peak_10066	chr4	97816792	97817759	+	0	NA	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	39649	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
chipseq_peak_10781	chr5	89553059	89553533	+	0	NA	intron (NM_133192, intron 1 of 3)	intron (NM_133192, intron 1 of 3)	25867	NM_133192	104443	Mm.447881	NM_133192	ENSMUSG00000035528	Npffr2	Gpr74|HG31|NPFF2	neuropeptide FF receptor 2	protein-coding
chipseq_peak_6451	chr17	79749617	79749958	+	0	NA	Intergenic	Intergenic	-34746	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding
chipseq_peak_1816	chr10	95407507	95407855	+	0	NA	Intergenic	Intergenic	7602	NM_001168657	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding
chipseq_peak_7864	chr2	67528140	67528769	+	0	NA	Intergenic	Intergenic	82452	NM_001024618	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding
chipseq_peak_6246	chr17	41869018	41869467	+	0	NA	Intergenic	Intergenic	-446705	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding
chipseq_peak_7979	chr2	92492043	92492699	+	0	NA	Intergenic	L1MB7|LINE|L1	-31853	NM_145832	228368	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding
chipseq_peak_7246	chr19	38361783	38362171	+	0	NA	Intergenic	L1_Rod|LINE|L1	-34003	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding
chipseq_peak_9936	chr4	78077442	78078315	+	0	NA	intron (NM_011211, intron 1 of 39)	intron (NM_011211, intron 1 of 39)	134017	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
chipseq_peak_7627	chr2	44339656	44341637	+	0	NA	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-275322	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_4077	chr13	112927411	112928526	+	0	NA	promoter-TSS (NM_028151)	promoter-TSS (NM_028151)	175	NM_172594	218629	Mm.35094	NM_172594	ENSMUSG00000042426	Dhx29	3732415M03|AU043276|Ddxx|E130202M19Rik	DEAH (Asp-Glu-Ala-His) box polypeptide 29	protein-coding
chipseq_peak_5155	chr15	55988597	55990482	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-82590	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding
chipseq_peak_12405	chr7	97914785	97915470	+	0	NA	Intergenic	Intergenic	-4831	NM_177696	233537	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding
chipseq_peak_11796	chr6	105385522	105386008	+	0	NA	Intergenic	Intergenic	106903	NR_040297	100503536	Mm.366960	NR_040297	ENSMUSG00000108237	Gm19757	-	predicted gene, 19757	ncRNA
chipseq_peak_2412	chr11	71873598	71874082	+	0	NA	Intergenic	Intergenic	66282	NR_045942	73816	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA
chipseq_peak_2531	chr11	101544172	101544716	+	0	NA	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	7511	NM_009764	12189	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding
chipseq_peak_6015	chr16	76429748	76431803	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-57726	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding
chipseq_peak_12169	chr7	63020022	63020546	+	0	NA	Intergenic	Intergenic	192242	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding
chipseq_peak_9755	chr4	43100427	43101475	+	0	NA	intron (NM_021468, intron 5 of 39)	L1_Mur3|LINE|L1	41998	NM_001310758	22249	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding
chipseq_peak_3272	chr12	93160210	93160950	+	0	NA	Intergenic	Intergenic	284243	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA
chipseq_peak_7786	chr2	60941188	60941503	+	0	NA	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	21859	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
chipseq_peak_4680	chr14	114300626	114301094	+	0	NA	Intergenic	Intergenic	-531105	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_2849	chr12	36666628	36667312	+	0	NA	intron (NM_178629, intron 9 of 9)	intron (NM_178629, intron 9 of 9)	-149235	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA
chipseq_peak_13341	chr9	22595421	22598055	+	0	NA	intron (NM_181316, intron 9 of 21)	intron (NM_181316, intron 9 of 21)	121023	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding
chipseq_peak_1485	chr10	40364132	40366318	+	0	NA	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	15917	NM_198164	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding
chipseq_peak_8055	chr2	107045882	107046244	+	0	NA	Intergenic	L1MD2|LINE|L1	13588	NM_008045	14308	Mm.249525	NM_008045	ENSMUSG00000027120	Fshb	FSH|FSH-B|FSH-beta|Fshbeta	follicle stimulating hormone beta	protein-coding
chipseq_peak_3265	chr12	92151275	92152049	+	0	NA	Intergenic	Intergenic	-302505	NM_001039089	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
chipseq_peak_4949	chr15	29691345	29691706	+	0	NA	Intergenic	Intergenic	-481068	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding
chipseq_peak_11108	chr5	147089666	147091143	+	0	NA	intron (NM_181730, intron 1 of 2)	intron (NM_181730, intron 1 of 2)	13058	NM_009087	20018	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding
chipseq_peak_9514	chr4	13196714	13197311	+	0	NA	Intergenic	UCON28a|Unknown|Unknown	290175	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
chipseq_peak_8189	chr2	133841387	133842000	+	0	NA	Intergenic	Intergenic	276985	NR_037273	100526500		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA
chipseq_peak_6646	chr18	22595871	22596454	+	0	NA	Intergenic	Intergenic	251073	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3 (Drosophila)	protein-coding
chipseq_peak_3681	chr13	68707231	68707765	+	0	NA	intron (NM_153534, intron 14 of 24)	intron (NM_153534, intron 14 of 24)	110059	NM_027035	69315	Mm.272795	NM_027035	ENSMUSG00000021534	1700001L19Rik	-	RIKEN cDNA 1700001L19 gene	protein-coding
chipseq_peak_7778	chr2	59178217	59178681	+	0	NA	intron (NM_026361, intron 1 of 21)	intron (NM_026361, intron 1 of 21)	17599	NM_026361	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding
chipseq_peak_10904	chr5	111724752	111725709	+	0	NA	Intergenic	Intergenic	36498	NR_045833	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA
chipseq_peak_11849	chr6	111084525	111085019	+	0	NA	intron (NM_177328, intron 4 of 9)	intron (NM_177328, intron 4 of 9)	439174	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
chipseq_peak_817	chr1	133351481	133352188	+	0	NA	intron (NM_031193, intron 1 of 8)	intron (NM_031193, intron 1 of 8)	1160	NM_031192	19701	Mm.220955	NM_031192	ENSMUSG00000070645	Ren1	D19352|Ren|Ren-1|Ren-A|Ren1c|Ren1d|Rn-1|Rnr	renin 1 structural	protein-coding
chipseq_peak_12579	chr8	6012157	6012817	+	0	NA	Intergenic	Intergenic	-907255	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
chipseq_peak_11851	chr6	111601924	111602443	+	0	NA	Intergenic	Intergenic	-608525	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA
chipseq_peak_101	chr1	22305124	22305613	+	0	NA	intron (NM_053270, intron 12 of 16)	intron (NM_053270, intron 12 of 16)	127475	NM_053270	116837	Mm.60061	NM_053270		Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding
chipseq_peak_2636	chr12	5274518	5274858	+	0	NA	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	100994	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding
chipseq_peak_10168	chr4	125625371	125625669	+	0	NA	intron (NM_001081097, intron 2 of 15)	MER2|DNA|TcMar-Tigger	120771	NR_035409	100124641		NR_035409	ENSMUSG00000076033	Mir692-3	Mir692-2b|Mirn692-2b|mmu-mir-692-3	microRNA 692-3	ncRNA
chipseq_peak_13821	chr9	103504535	103505850	+	0	NA	intron (NM_178638, intron 3 of 5)	intron (NM_178638, intron 3 of 5)	-24864	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding
chipseq_peak_8487	chr3	18218949	18219556	+	0	NA	intron (NM_007825, intron 1 of 5)	intron (NM_007825, intron 1 of 5)	24086	NM_007825	13123	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding
chipseq_peak_5089	chr15	47953102	47953494	+	0	NA	intron (NM_001081391, intron 20 of 70)	intron (NM_001081391, intron 20 of 70)	838691	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
chipseq_peak_725	chr1	115422413	115422780	+	0	NA	Intergenic	Intergenic	-262541	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
chipseq_peak_9314	chr3	143224306	143224708	+	0	NA	Intergenic	Intergenic	-18548	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA
chipseq_peak_4133	chr14	9329125	9330434	+	0	NA	Intergenic	Intergenic	-554316	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo
chipseq_peak_6853	chr18	54595700	54596881	+	0	NA	Intergenic	Intergenic	-15454	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA
chipseq_peak_7179	chr19	27353130	27353366	+	0	NA	Intergenic	Intergenic	30629	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding
chipseq_peak_2502	chr11	90600089	90601186	+	0	NA	intron (NM_011505, intron 7 of 17)	intron (NM_011505, intron 7 of 17)	37471	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding
chipseq_peak_6667	chr18	23942258	23943811	+	0	NA	Intergenic	Intergenic	-11654	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding
chipseq_peak_12168	chr7	62956879	62957223	+	0	NA	Intergenic	Lx7|LINE|L1	255475	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding
chipseq_peak_13900	chr9	112720077	112720779	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	463854	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA
chipseq_peak_1	chr1	3388569	3388888	+	0	NA	intron (NM_001011874, intron 2 of 2)	intron (NM_001011874, intron 2 of 2)	282770	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X Kell blood group precursor related family member 4	protein-coding
chipseq_peak_4013	chr13	107976872	107977591	+	0	NA	Intergenic	Intergenic	-67243	NM_001048250	75616	Mm.491164	NM_001048250		Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding
chipseq_peak_4686	chr14	114790153	114791888	+	0	NA	Intergenic	Intergenic	-40945	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
chipseq_peak_9421	chr3	156242931	156243351	+	0	NA	Intergenic	Intergenic	266787	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
chipseq_peak_5969	chr16	74089640	74090415	+	0	NA	intron (NM_175549, intron 2 of 27)	intron (NM_175549, intron 2 of 27)	252040	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA
chipseq_peak_2718	chr12	14826389	14827270	+	0	NA	Intergenic	Intergenic	223560	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
chipseq_peak_2198	chr11	25574127	25574500	+	0	NA	Intergenic	Intergenic	248206	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_11541	chr6	59010674	59011812	+	0	NA	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	13259	NM_153574	58909	Mm.28813	NM_153574		Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding
chipseq_peak_347	chr1	54579847	54580438	+	0	NA	Intergenic	Intergenic	-22458	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding
chipseq_peak_7553	chr2	37908753	37909262	+	0	NA	intron (NM_146122, intron 13 of 21)	intron (NM_146122, intron 13 of 21)	132758	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding
chipseq_peak_12132	chr7	55170365	55170836	+	0	NA	intron (NM_178705, intron 6 of 11)	intron (NM_178705, intron 6 of 11)	335355	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
chipseq_peak_6871	chr18	55474651	55475057	+	0	NA	Intergenic	Intergenic	-484674	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_13073	chr8	90300739	90303338	+	0	NA	intron (NM_172913, intron 1 of 6)	intron (NM_172913, intron 1 of 6)	46214	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
chipseq_peak_8279	chr2	142419507	142420463	+	0	NA	Intergenic	Intergenic	481479	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_7984	chr2	94122413	94123879	+	0	NA	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	34763	NM_019657	56348	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding
chipseq_peak_12193	chr7	69276366	69277679	+	0	NA	Intergenic	Intergenic	-219072	NR_045940	73796	Mm.410832	NR_045940		4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA
chipseq_peak_4687	chr14	114913238	114913520	+	0	NA	Intergenic	Intergenic	32569	NR_126550	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA
chipseq_peak_12022	chr6	148542871	148543942	+	0	NA	Intergenic	Intergenic	70903	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
chipseq_peak_1806	chr10	93700603	93701727	+	0	NA	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-17843	NR_038017	100504069	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	OTTMUSG00000027787	predicted gene 15915	ncRNA
chipseq_peak_1633	chr10	65179072	65179414	+	0	NA	Intergenic	Intergenic	944821	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA
chipseq_peak_11790	chr6	104879312	104880338	+	0	NA	Intergenic	Intergenic	386781	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_6745	chr18	35511872	35513185	+	0	NA	Intergenic	Intergenic	-13603	NM_030749	81500	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding
chipseq_peak_4101	chr13	116110688	116111576	+	0	NA	Intergenic	Intergenic	198556	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding
chipseq_peak_10431	chr5	40745936	40746520	+	0	NA	Intergenic	Intergenic	961463	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding
chipseq_peak_5117	chr15	51675293	51675651	+	0	NA	Intergenic	Intergenic	189989	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
chipseq_peak_747	chr1	123028964	123029259	+	0	NA	Intergenic	Intergenic	1016448	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding
chipseq_peak_3939	chr13	98929320	98929650	+	0	NA	Intergenic	Intergenic	-3101	NM_178716	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding
chipseq_peak_13087	chr8	94266243	94267107	+	0	NA	intron (NM_172410, intron 4 of 22)	intron (NM_172410, intron 4 of 22)	52074	NM_172410	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding
chipseq_peak_5336	chr15	80484749	80485305	+	0	NA	intron (NM_001163189, intron 4 of 5)	intron (NM_001163189, intron 4 of 5)	75443	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding
chipseq_peak_7418	chr2	7999432	7999867	+	0	NA	Intergenic	Intergenic	-603451	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_13645	chr9	63385853	63386233	+	0	NA	Intergenic	Intergenic	-8191	NM_011840	23938	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding
chipseq_peak_1545	chr10	49731663	49732703	+	0	NA	intron (NM_010349, intron 2 of 17)	intron (NM_010349, intron 2 of 17)	56571	NM_001111268	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding
chipseq_peak_11859	chr6	113019391	113019857	+	0	NA	Intergenic	Intergenic	-26703	NM_008188	14911	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding
chipseq_peak_290	chr1	43531322	43531746	+	0	NA	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	85783	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding
chipseq_peak_748	chr1	123151080	123151465	+	0	NA	Intergenic	Intergenic	894287	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding
chipseq_peak_11934	chr6	137271901	137272939	+	0	NA	intron (NM_001164401, intron 1 of 25)	intron (NM_001164401, intron 1 of 25)	20121	NM_001164401	19277	Mm.186361	NM_011216		Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
chipseq_peak_4992	chr15	36621649	36622010	+	0	NA	Intergenic	Intergenic	-12856	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding
chipseq_peak_363	chr1	55917402	55920723	+	0	NA	Intergenic	B1F|SINE|Alu	-12179	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
chipseq_peak_6968	chr18	68801436	68801702	+	0	NA	Intergenic	Intergenic	62169	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA
chipseq_peak_10232	chr4	153495190	153495495	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-12512	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding
chipseq_peak_5582	chr16	29330869	29331595	+	0	NA	intron (NM_001284375, intron 6 of 28)	L2c|LINE|L2	47500	NM_175650	268878	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding
chipseq_peak_2921	chr12	45833621	45834452	+	0	NA	Intergenic	Intergenic	-759553	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
chipseq_peak_6283	chr17	50290938	50292960	+	0	NA	intron (NM_001277863, intron 1 of 9)	B1_Mur2|SINE|Alu	1671	NM_010021	13164	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding
chipseq_peak_820	chr1	136417505	136418633	+	0	NA	intron (NM_026500, intron 2 of 7)	B1_Mus1|SINE|Alu	-2550	NR_024328	320054	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA
chipseq_peak_11139	chr6	5739222	5742454	+	0	NA	intron (NM_010063, intron 1 of 16)	intron (NM_010063, intron 1 of 16)	15199	NM_001191026	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding
chipseq_peak_1447	chr10	34328290	34328567	+	0	NA	intron (NM_176968, intron 6 of 11)	intron (NM_176968, intron 6 of 11)	31007	NM_030203	72480	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding
chipseq_peak_1158	chr1	185438947	185439704	+	0	NA	intron (NR_038006, intron 1 of 1)	L1MDa|LINE|L1	2494	NR_038006	319562	Mm.184335	NM_176943	ENSMUSG00000051295	9630028B13Rik	-	RIKEN cDNA 9630028B13 gene	ncRNA
chipseq_peak_2300	chr11	40873019	40873454	+	0	NA	Intergenic	L2|LINE|L2	-117950	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding
chipseq_peak_2779	chr12	28055591	28056197	+	0	NA	Intergenic	Intergenic	492443	NM_001177964	68511	Mm.310284	NM_001177964	ENSMUSG00000020633	Dcdc2c	1110015M06Rik	doublecortin domain containing 2C	protein-coding
chipseq_peak_7274	chr19	47779925	47780653	+	0	NA	exon (NM_027559, exon 17 of 38)	exon (NM_027559, exon 17 of 38)	-25132	NR_106165	102465883		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA
chipseq_peak_13218	chr8	116192489	116192849	+	0	NA	Intergenic	Intergenic	-312346	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding
chipseq_peak_6782	chr18	43175762	43176181	+	0	NA	Intergenic	Intergenic	-31726	NM_178749	269019	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding
chipseq_peak_2583	chr11	110587214	110588737	+	0	NA	Intergenic	Intergenic	188853	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
chipseq_peak_63	chr1	18306033	18309457	+	0	NA	Intergenic	Intergenic	-42607	NM_001040027	654464	Mm.99530	NM_001040027		Gm15386	BD-17|BD-41|Defb17|Defb41|OTTMUSG00000020946|OTTMUSG00000020948|mBD-41	predicted gene 15386	protein-coding
chipseq_peak_1052	chr1	171713334	171714302	+	0	NA	Intergenic	Intergenic	31763	NM_007649	12506	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding
chipseq_peak_3350	chr12	116311211	116311668	+	0	NA	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	30217	NM_028731	52635	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding
chipseq_peak_12714	chr8	30930068	30930763	+	0	NA	Intergenic	Intergenic	-159247	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding
chipseq_peak_4647	chr14	108828077	108829136	+	0	NA	Intergenic	Intergenic	85633	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding
chipseq_peak_13311	chr9	12355670	12356188	+	0	NA	Intergenic	Intergenic	749926	NR_040755	78219	Mm.414868	NR_040755		4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA
chipseq_peak_12248	chr7	76911758	76912102	+	0	NA	intron (NM_001199224, intron 22 of 22)	Charlie21a|DNA|hAT-Charlie	682043	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
chipseq_peak_10058	chr4	97127567	97128113	+	0	NA	Intergenic	Intergenic	-342680	NM_001081284	620779	Mm.439625	NM_001081284	ENSMUSG00000078639	Gm12695	OTTMUSG00000008003	predicted gene 12695	protein-coding
chipseq_peak_802	chr1	131694721	131695010	+	0	NA	intron (NM_001311096, intron 1 of 4)	(TTAA)n|Simple_repeat|Simple_repeat	6170	NM_001311096	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding
chipseq_peak_3513	chr13	29427290	29427657	+	0	NA	intron (NR_131896, intron 13 of 16)	intron (NR_131896, intron 13 of 16)	411218	NR_045073	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
chipseq_peak_6359	chr17	63807822	63808317	+	0	NA	Intergenic	Intergenic	-55912	NM_001037997	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding
chipseq_peak_5226	chr15	64727240	64728046	+	0	NA	intron (NM_001291903, intron 11 of 16)	intron (NM_001291903, intron 11 of 16)	194653	NM_009623	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding
chipseq_peak_13259	chr8	127534918	127536207	+	0	NA	intron (NM_001309391, intron 22 of 24)	intron (NM_001309391, intron 22 of 24)	235910	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
chipseq_peak_4908	chr15	23396023	23397921	+	0	NA	intron (NM_001081299, intron 6 of 11)	L4_A_Mam|LINE|RTE-X	360509	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
chipseq_peak_4718	chr14	117571711	117573611	+	0	NA	intron (NM_011821, intron 3 of 8)	intron (NM_011821, intron 3 of 8)	381186	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA
chipseq_peak_6587	chr18	12925252	12925679	+	0	NA	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	16376	NM_207530	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding
chipseq_peak_8311	chr2	146110012	146110411	+	0	NA	Intergenic	Intergenic	-111786	NM_016889	53626	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding
chipseq_peak_1274	chr10	12986338	12986945	+	0	NA	Intergenic	Intergenic	-21809	NM_175102	66125	Mm.29743	NM_175102		Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding
chipseq_peak_2042	chr10	121229718	121230283	+	0	NA	Intergenic	Intergenic	81189	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding
chipseq_peak_10185	chr4	129623932	129624616	+	0	NA	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-366	NM_025455	66264	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding
chipseq_peak_11780	chr6	104028416	104029392	+	0	NA	Intergenic	Intergenic	-464140	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding
chipseq_peak_5866	chr16	65129202	65129655	+	0	NA	Intergenic	Intergenic	-23644	NM_008310	15557	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding
chipseq_peak_2002	chr10	113570318	113570761	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-16039	NR_035418	100316831		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA
chipseq_peak_11358	chr6	33857568	33858099	+	0	NA	intron (NM_009148, intron 13 of 17)	intron (NM_009148, intron 13 of 17)	-171615	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding
chipseq_peak_11770	chr6	103665510	103666867	+	0	NA	intron (NM_007697, intron 7 of 26)	intron (NM_007697, intron 7 of 26)	155312	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule with homology to L1CAM	protein-coding
chipseq_peak_13967	chrX	12839766	12840615	+	0	NA	Intergenic	Intergenic	77912	NR_045852	552913	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	OTTMUSG00000017535	predicted gene 14634	ncRNA
chipseq_peak_366	chr1	55959960	55961128	+	0	NA	intron (NR_045837, intron 4 of 5)	intron (NR_045837, intron 4 of 5)	29303	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
chipseq_peak_10022	chr4	88157228	88158312	+	0	NA	intron (NM_001081184, intron 5 of 43)	intron (NM_001081184, intron 5 of 43)	35730	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA
chipseq_peak_6776	chr18	42768640	42769065	+	0	NA	intron (NM_028392, intron 1 of 8)	(TAG)n|Simple_repeat|Simple_repeat	130654	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
chipseq_peak_948	chr1	155489358	155489603	+	0	NA	Intergenic	Intergenic	37631	NR_132128	433367	Mm.359304	NR_132128		Gm5532	EG433367	predicted gene 5532	ncRNA
chipseq_peak_11711	chr6	98282257	98283330	+	0	NA	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	59961	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_3107	chr12	69159348	69160013	+	0	NA	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-494	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding
chipseq_peak_11477	chr6	49860581	49861026	+	0	NA	Intergenic	B3|SINE|B2	38093	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding
chipseq_peak_12854	chr8	53164162	53164451	+	0	NA	Intergenic	Intergenic	-347396	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding
chipseq_peak_539	chr1	77342716	77343344	+	0	NA	Intergenic	Intergenic	153738	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA
chipseq_peak_10400	chr5	37535303	37536292	+	0	NA	intron (NM_022416, intron 3 of 11)	intron (NM_022416, intron 3 of 11)	181356	NM_022416	64293	Mm.103714	NM_022416	ENSMUSG00000029123	Stk32b	2510009F08Rik|STKG6|Stk32|YANK2	serine/threonine kinase 32B	protein-coding
chipseq_peak_11398	chr6	38452821	38453569	+	0	NA	intron (NM_177185, intron 3 of 16)	MER58B|DNA|hAT-Charlie	19270	NM_177185	320538	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding
chipseq_peak_6127	chr16	95945379	95946246	+	0	NA	Intergenic	Intergenic	-16735	NR_040484	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA
chipseq_peak_10711	chr5	81082669	81084186	+	0	NA	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	61834	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_9201	chr3	124155902	124156926	+	0	NA	Intergenic	Intergenic	-164623	NM_146140	229801	Mm.165810	NM_146140		Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding
chipseq_peak_1464	chr10	37812597	37813048	+	0	NA	Intergenic	Intergenic	-362952	NR_131035	75877	Mm.402094	NR_131035		4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA
chipseq_peak_3759	chr13	81942761	81946730	+	0	NA	Intergenic	Intergenic	161453	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_453	chr1	64640831	64641562	+	0	NA	Intergenic	Intergenic	-24028	NM_025964	67099	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding
chipseq_peak_12076	chr7	44892429	44893486	+	0	NA	promoter-TSS (NM_029365)	promoter-TSS (NM_029365)	-591	NM_029365	75613	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding
chipseq_peak_9286	chr3	140059148	140060886	+	0	NA	Intergenic	Intergenic	31768	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA
chipseq_peak_10085	chr4	102952274	102952860	+	0	NA	intron (NM_001285859, intron 17 of 23)	intron (NM_001285859, intron 17 of 23)	-33812	NM_026100	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding
chipseq_peak_1987	chr10	110933199	110933684	+	0	NA	intron (NM_007792, intron 2 of 5)	intron (NM_007792, intron 2 of 5)	13265	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding
chipseq_peak_11194	chr6	13541779	13542325	+	0	NA	Intergenic	Intergenic	66011	NM_028990	101118	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding
chipseq_peak_1225	chr1	194885096	194885567	+	0	NA	Intergenic	MIRb|SINE|MIR	-53490	NM_133654	12490	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding
chipseq_peak_5458	chr15	103196917	103198183	+	0	NA	3' UTR (NM_001110216, exon 6 of 6)	3' UTR (NM_001110216, exon 6 of 6)	17802	NM_001110216	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding
chipseq_peak_1982	chr10	110563508	110563874	+	0	NA	Intergenic	Intergenic	-36959	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
chipseq_peak_146	chr1	28047233	28047760	+	0	NA	Intergenic	Intergenic	732756	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding
chipseq_peak_9903	chr4	75065758	75066225	+	0	NA	Intergenic	Intergenic	212295	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_4242	chr14	33532914	33533243	+	0	NA	Intergenic	Intergenic	-56192	NM_008978	19256	Mm.8019	NM_008978	ENSMUSG00000021940	Ptpn20	typ	protein tyrosine phosphatase, non-receptor type 20	protein-coding
chipseq_peak_1228	chr10	4923951	4925640	+	0	NA	intron (NM_001302533, intron 5 of 7)	intron (NM_001302533, intron 5 of 7)	144268	NM_022027	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756	spectrin repeat containing, nuclear envelope 1	protein-coding
chipseq_peak_4247	chr14	34447785	34448148	+	0	NA	5' UTR (NM_009758, exon 3 of 13)	5' UTR (NM_009758, exon 3 of 13)	54580	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding
chipseq_peak_4987	chr15	34936665	34937312	+	0	NA	intron (NM_019635, intron 10 of 10)	intron (NM_019635, intron 10 of 10)	98939	NM_001271704	16539	Mm.71045	NM_181317		Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding
chipseq_peak_4204	chr14	24578902	24579391	+	0	NA	Intergenic	Intergenic	88465	NM_207634	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding
chipseq_peak_280	chr1	42005948	42006976	+	0	NA	Intergenic	Intergenic	688363	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
chipseq_peak_6858	chr18	54972838	54973377	+	0	NA	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	17073	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
chipseq_peak_9225	chr3	127953547	127954157	+	0	NA	non-coding (NR_040552, exon 5 of 5)	non-coding (NR_040552, exon 5 of 5)	37681	NR_040552	329753	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA
chipseq_peak_5111	chr15	50993265	50993606	+	0	NA	Intergenic	Intergenic	-103394	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
chipseq_peak_11622	chr6	80077975	80078325	+	0	NA	intron (NM_001134743, intron 2 of 2)	intron (NM_001134743, intron 2 of 2)	58507	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding
chipseq_peak_636	chr1	97589576	97590191	+	0	NA	Intergenic	Intergenic	72135	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding
chipseq_peak_13408	chr9	29179652	29180044	+	0	NA	intron (NM_172290, intron 2 of 7)	intron (NM_172290, intron 2 of 7)	783281	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
chipseq_peak_8058	chr2	107202255	107203026	+	0	NA	Intergenic	Intergenic	-87949	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
chipseq_peak_4476	chr14	82593584	82593983	+	0	NA	Intergenic	Intergenic	-1849780	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
chipseq_peak_5115	chr15	51627564	51627865	+	0	NA	Intergenic	Intergenic	-232104	NR_045092	100502643	Mm.131987	NR_045092		Gm19303	-	predicted gene, 19303	ncRNA
chipseq_peak_6234	chr17	32018196	32018576	+	0	NA	intron (NM_028902, intron 3 of 7)	intron (NM_028902, intron 3 of 7)	16122	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding
chipseq_peak_5481	chr16	6299783	6300545	+	0	NA	intron (NM_021477, intron 2 of 16)	intron (NM_021477, intron 2 of 16)	324577	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA
chipseq_peak_10294	chr5	13636024	13636813	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-155201	NM_027650	71026	Mm.158536	NM_027650	ENSMUSG00000067855	Speer3	4933405P08Rik|SPEER-3	spermatogenesis associated glutamate (E)-rich protein 3	protein-coding
chipseq_peak_11952	chr6	139198212	139199539	+	0	NA	Intergenic	Intergenic	123701	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA
chipseq_peak_8386	chr2	170051396	170051930	+	0	NA	Intergenic	Intergenic	19008	NR_033634	100043910	Mm.468546	NR_033632	ENSMUSG00000097065	A630075F10Rik	4831414D02|Gm4722	RIKEN cDNA A630075F10 gene	ncRNA
chipseq_peak_5768	chr16	52513601	52514256	+	0	NA	Intergenic	Intergenic	-60931	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
chipseq_peak_5130	chr15	52699568	52700216	+	0	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-12553	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
chipseq_peak_9053	chr3	104345981	104346469	+	0	NA	Intergenic	B3|SINE|B2	-125819	NM_001159354	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
chipseq_peak_6466	chr17	82251698	82252685	+	0	NA	Intergenic	Intergenic	-513804	NM_001112798	20541	Mm.265834	NM_011406		Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
chipseq_peak_9079	chr3	110511177	110511771	+	0	NA	Intergenic	Intergenic	-260475	NM_178891	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding
chipseq_peak_286	chr1	42485720	42486162	+	0	NA	Intergenic	Intergenic	208884	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
chipseq_peak_7849	chr2	66158192	66158490	+	0	NA	Intergenic	RSINE1|SINE|B4	-33548	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
chipseq_peak_5452	chr15	102592443	102596889	+	0	NA	intron (NM_001310067, intron 1 of 11)	intron (NM_001310067, intron 1 of 11)	30798	NM_001310070	223922	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding
chipseq_peak_198	chr1	33609676	33610439	+	0	NA	intron (NM_008922, intron 7 of 13)	intron (NM_008922, intron 7 of 13)	59737	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding
chipseq_peak_1593	chr10	56204415	56204765	+	0	NA	intron (NM_001033385, intron 3 of 32)	intron (NM_001033385, intron 3 of 32)	24099	NM_001033385	544696	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding
chipseq_peak_10886	chr5	110982393	110983146	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-21375	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_9147	chr3	118428601	118430318	+	0	NA	Intergenic	Intergenic	-4398	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA
chipseq_peak_12547	chr7	133071725	133072825	+	0	NA	intron (NM_009980, intron 2 of 10)	B4|SINE|B4	51208	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding
chipseq_peak_1803	chr10	93130183	93130796	+	0	NA	Intergenic	Intergenic	-30387	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding
chipseq_peak_458	chr1	66001635	66001956	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	75273	NM_027010	12969	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding
chipseq_peak_1976	chr10	110380863	110381289	+	0	NA	Intergenic	Intergenic	-219574	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
chipseq_peak_7088	chr19	14435649	14436508	+	0	NA	Intergenic	Intergenic	2428	NR_003027	19862		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA
chipseq_peak_3883	chr13	91636743	91637091	+	0	NA	intron (NM_024186, intron 4 of 15)	intron (NM_024186, intron 4 of 15)	-104604	NM_028790	74156	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding
chipseq_peak_10592	chr5	65030319	65030651	+	0	NA	intron (NM_026667, intron 10 of 13)	intron (NM_026667, intron 10 of 13)	60167	NR_030577	100124451		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA
chipseq_peak_7713	chr2	53501743	53502603	+	0	NA	Intergenic	Intergenic	310089	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding
chipseq_peak_11263	chr6	20775041	20776381	+	0	NA	Intergenic	Intergenic	-440398	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding
chipseq_peak_1109	chr1	177363567	177367119	+	0	NA	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	-79318	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_13706	chr9	79193120	79193645	+	0	NA	Intergenic	Intergenic	325920	NR_045336	100038575	Mm.367838	NR_045336		Gm10635	ENSMUSG00000074174	predicted gene 10635	ncRNA
chipseq_peak_12384	chr7	96290519	96291084	+	0	NA	intron (NM_001310760, intron 1 of 32)	MER58A|DNA|hAT-Charlie	-14866	NR_105818	102465210		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA
chipseq_peak_8111	chr2	114394770	114395308	+	0	NA	Intergenic	Intergenic	-193607	NM_175466	228491	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding
chipseq_peak_1411	chr10	29589053	29590553	+	0	NA	Intergenic	MusHAL1|LINE|L1	-53936	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding
chipseq_peak_7340	chr19	60343769	60344302	+	0	NA	Intergenic	Intergenic	-117338	NM_029648	76539	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding
chipseq_peak_9440	chr3	158946849	158947615	+	0	NA	Intergenic	Intergenic	-129132	NR_040750	624759	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA
chipseq_peak_8482	chr3	18042267	18044095	+	0	NA	Intergenic	B4A|SINE|B4	-11144	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding
chipseq_peak_1695	chr10	71114219	71114658	+	0	NA	intron (NM_031397, intron 1 of 20)	intron (NM_031397, intron 1 of 20)	45196	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	bicaudal C homolog 1 (Drosophila)	protein-coding
chipseq_peak_11744	chr6	101790055	101790629	+	0	NA	intron (NR_027989, intron 3 of 5)	L1M5|LINE|L1	16093	NR_027989	207157	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157|ENSMUSG00000052236	predicted gene 9871	ncRNA
chipseq_peak_4954	chr15	30484891	30485305	+	0	NA	intron (NM_008729, intron 3 of 22)	intron (NM_008729, intron 3 of 22)	312505	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding
chipseq_peak_7634	chr2	44461607	44462841	+	0	NA	Intergenic	Intergenic	-396900	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_11152	chr6	8310337	8310929	+	0	NA	intron (NM_001302353, intron 2 of 4)	intron (NM_001302353, intron 2 of 4)	51345	NM_001302354	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding
chipseq_peak_8944	chr3	80804777	80805663	+	0	NA	Intergenic	Intergenic	-2429	NM_001083806	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_2858	chr12	37751829	37752667	+	0	NA	Intergenic	Intergenic	-128457	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding
chipseq_peak_470	chr1	68054514	68055092	+	0	NA	intron (NM_010154, intron 25 of 26)	intron (NM_010154, intron 25 of 26)	931776	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding
chipseq_peak_12798	chr8	44529584	44530296	+	0	NA	Intergenic	Intergenic	-420268	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
chipseq_peak_13987	chrX	43279578	43280870	+	0	NA	Intergenic	Intergenic	-5440	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding
chipseq_peak_6355	chr17	63329322	63331075	+	0	NA	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	-17225	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA
chipseq_peak_12258	chr7	78119831	78120209	+	0	NA	Intergenic	Intergenic	457818	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
chipseq_peak_5469	chr16	5688261	5688620	+	0	NA	Intergenic	Intergenic	-196353	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_11576	chr6	66340944	66342352	+	0	NA	Intergenic	Intergenic	-193820	NM_019499	56150	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding
chipseq_peak_3603	chr13	46363036	46364545	+	0	NA	Intergenic	Intergenic	-54510	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding
chipseq_peak_10809	chr5	97195081	97195628	+	0	NA	Intergenic	Intergenic	-83758	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding
chipseq_peak_6298	chr17	52191163	52191677	+	0	NA	Intergenic	Intergenic	308693	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA
chipseq_peak_7591	chr2	43208337	43208561	+	0	NA	Intergenic	Intergenic	-346876	NM_001289593	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding
chipseq_peak_2894	chr12	41593758	41594538	+	0	NA	intron (NM_053122, intron 4 of 6)	L1MD2|LINE|L1	-108091	NM_001271709	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
chipseq_peak_5816	chr16	60712487	60713865	+	0	NA	Intergenic	Intergenic	-107645	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding
chipseq_peak_1057	chr1	172686522	172686898	+	0	NA	Intergenic	Tigger9a|DNA|TcMar-Tigger	-11346	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding
chipseq_peak_13691	chr9	76847663	76848996	+	0	NA	Intergenic	Intergenic	197452	NM_012033	26944	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding
chipseq_peak_6239	chr17	34699807	34700522	+	0	NA	intron (NM_031176, intron 16 of 32)	RLTR49|LTR|ERVK	29629	NM_031176	81877	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding
chipseq_peak_12845	chr8	49702850	49703218	+	0	NA	Intergenic	Intergenic	-665078	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
chipseq_peak_4363	chr14	64533406	64534524	+	0	NA	Intergenic	Intergenic	-54150	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA
chipseq_peak_3730	chr13	78095286	78096806	+	0	NA	intron (NM_001163419, intron 9 of 9)	intron (NM_001163419, intron 9 of 9)	71144	NM_029315	75507	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding
chipseq_peak_13578	chr9	54668004	54668854	+	0	NA	Intergenic	Lx7|LINE|L1	-6544	NM_053178	94180	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|Lpd|R75185|mKIAA0631	acyl-CoA synthetase bubblegum family member 1	protein-coding
chipseq_peak_11553	chr6	61567580	61568292	+	0	NA	intron (NM_001164316, intron 5 of 10)	intron (NM_001164316, intron 5 of 10)	-387126	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
chipseq_peak_11793	chr6	105084342	105085001	+	0	NA	Intergenic	Intergenic	407997	NR_040297	100503536	Mm.366960	NR_040297	ENSMUSG00000108237	Gm19757	-	predicted gene, 19757	ncRNA
chipseq_peak_2405	chr11	69012015	69012854	+	0	NA	Intergenic	RLTR34C_MM|LTR|ERVK	-3477	NM_001281465	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding
chipseq_peak_11297	chr6	25020173	25020417	+	0	NA	Intergenic	Intergenic	-64170	NM_177013	319832	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding
chipseq_peak_3108	chr12	69242096	69242420	+	0	NA	intron (NM_178253, intron 1 of 12)	intron (NM_178253, intron 1 of 12)	426	NM_178253	271005	Mm.180969	NM_178253		Klhdc1	-	kelch domain containing 1	protein-coding
chipseq_peak_115	chr1	24184946	24185378	+	0	NA	exon (NM_007740, exon 5 of 38)	exon (NM_007740, exon 5 of 38)	7552	NM_007740	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding
chipseq_peak_9540	chr4	14775870	14776199	+	0	NA	intron (NM_028499, intron 1 of 7)	intron (NM_028499, intron 1 of 7)	20018	NM_028499	73314	Mm.52613	NM_028499	ENSMUSG00000023151	Lrrc69	1700034K16Rik	leucine rich repeat containing 69	protein-coding
chipseq_peak_7821	chr2	63177403	63178118	+	0	NA	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	6527	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
chipseq_peak_5460	chr15	103272440	103272925	+	0	NA	promoter-TSS (NM_019817)	promoter-TSS (NM_019817)	-236	NM_019817	56447	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding
chipseq_peak_4704	chr14	116538160	116538514	+	0	NA	Intergenic	MYSERV-int|LTR|ERVK	-386960	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_11602	chr6	76965026	76966074	+	0	NA	intron (NM_145732, intron 13 of 18)	intron (NM_145732, intron 13 of 18)	-277167	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
chipseq_peak_3667	chr13	59238379	59238744	+	0	NA	Intergenic	Intergenic	305890	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding
chipseq_peak_469	chr1	67268420	67268967	+	0	NA	Intergenic	Intergenic	145666	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding
chipseq_peak_6521	chr17	90500932	90501734	+	0	NA	intron (NM_020252, intron 17 of 22)	intron (NM_020252, intron 17 of 22)	-359836	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
chipseq_peak_7304	chr19	53852712	53853639	+	0	NA	intron (NM_001170847, intron 11 of 13)	intron (NM_001170847, intron 11 of 13)	-39056	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding
chipseq_peak_340	chr1	53061933	53062661	+	0	NA	intron (NM_010834, intron 1 of 2)	intron (NM_010834, intron 1 of 2)	657	NM_010834	17700	Mm.3514	NM_010834	ENSMUSG00000026100	Mstn	Cmpt|Gdf8	myostatin	protein-coding
chipseq_peak_5154	chr15	55780471	55780883	+	0	NA	intron (NM_016667, intron 2 of 6)	intron (NM_016667, intron 2 of 6)	126272	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding
chipseq_peak_4799	chr15	12096514	12096948	+	0	NA	Intergenic	Intergenic	-21120	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding
chipseq_peak_4884	chr15	21179248	21180933	+	0	NA	intron (NM_001008420, intron 1 of 11)	intron (NM_001008420, intron 1 of 11)	68638	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
chipseq_peak_5418	chr15	95005130	95006222	+	0	NA	intron (NM_178789, intron 5 of 7)	intron (NM_178789, intron 5 of 7)	143642	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
chipseq_peak_4397	chr14	72357969	72358403	+	0	NA	Intergenic	Intergenic	351817	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding
chipseq_peak_1800	chr10	93014342	93015312	+	0	NA	Intergenic	Intergenic	-146049	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding
chipseq_peak_3246	chr12	86894474	86895781	+	0	NA	Intergenic	Intergenic	-10313	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding
chipseq_peak_5144	chr15	54466545	54467289	+	0	NA	TTS (NM_173422)	TTS (NM_173422)	56143	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding
chipseq_peak_3216	chr12	81637007	81637317	+	0	NA	intron (NM_001033149, intron 1 of 2)	MER45B|DNA|hAT-Tip100	5913	NM_001033149	69480	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding
chipseq_peak_6847	chr18	54379462	54380256	+	0	NA	Intergenic	Intergenic	-42436	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA
chipseq_peak_6063	chr16	80728619	80729065	+	0	NA	Intergenic	MER102c|DNA|hAT-Charlie	-471855	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
chipseq_peak_12386	chr7	96421686	96422097	+	0	NA	intron (NM_001310760, intron 2 of 32)	intron (NM_001310760, intron 2 of 32)	-79927	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA
chipseq_peak_14042	chrX	77079522	77080268	+	0	NA	Intergenic	MER5C1|DNA|hAT-Charlie	396041	NR_035475	100316834		NR_035475	ENSMUSG00000088980	Mir669m-2	mmu-mir-669m-2	microRNA 669m-2	ncRNA
chipseq_peak_6562	chr18	6747730	6748704	+	0	NA	Intergenic	Intergenic	-16950	NM_001278447	19330	Mm.132802	NM_181070		Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding
chipseq_peak_9586	chr4	20526840	20527307	+	0	NA	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	251595	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding
chipseq_peak_9046	chr3	104057716	104060118	+	0	NA	intron (NM_001159354, intron 7 of 20)	intron (NM_001159354, intron 7 of 20)	-90601	NR_030676	100125931	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA
chipseq_peak_6020	chr16	76687477	76689155	+	0	NA	Intergenic	Intergenic	-315267	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding
chipseq_peak_5046	chr15	43834225	43834659	+	0	NA	Intergenic	Intergenic	35587	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
chipseq_peak_2668	chr12	7468378	7468870	+	0	NA	Intergenic	MLTR18D_MM|LTR|ERVK	-88294	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
chipseq_peak_11249	chr6	18651943	18652229	+	0	NA	Intergenic	Intergenic	-137261	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
chipseq_peak_1349	chr10	24887087	24887752	+	0	NA	intron (NM_001166416, intron 11 of 29)	intron (NM_001166416, intron 11 of 29)	17433	NM_001166416	70208	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding
chipseq_peak_8734	chr3	54349440	54349767	+	0	NA	Intergenic	Intergenic	-11504	NM_001313898	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding
chipseq_peak_10657	chr5	72332920	72333267	+	0	NA	intron (NM_016869, intron 13 of 21)	intron (NM_016869, intron 13 of 21)	129750	NM_153389	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding
chipseq_peak_4587	chr14	100458720	100459491	+	0	NA	Intergenic	Intergenic	-309309	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
chipseq_peak_13915	chr9	113176887	113177910	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	409754	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_2523	chr11	100323585	100323908	+	0	NA	Intergenic	Intergenic	3750	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding
chipseq_peak_6669	chr18	24673233	24673738	+	0	NA	intron (NM_026779, intron 5 of 14)	L1MB4|LINE|L1	19794	NM_026779	68591	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding
chipseq_peak_9299	chr3	141226842	141227821	+	0	NA	Intergenic	Intergenic	-14976	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding
chipseq_peak_4036	chr13	109495361	109496040	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	170956	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
chipseq_peak_1307	chr10	17387213	17387638	+	0	NA	Intergenic	Intergenic	-291643	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA
chipseq_peak_1652	chr10	67492239	67492626	+	0	NA	Intergenic	Intergenic	-45437	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding
chipseq_peak_6196	chr17	13009860	13010433	+	0	NA	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	2307	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding
chipseq_peak_4406	chr14	74528917	74530046	+	0	NA	Intergenic	Intergenic	-111359	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding
chipseq_peak_12863	chr8	54425641	54426016	+	0	NA	Intergenic	Intergenic	104170	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding
chipseq_peak_1715	chr10	73871175	73872351	+	0	NA	intron (NM_001142735, intron 1 of 32)	intron (NM_001142735, intron 1 of 32)	49896	NM_001142738	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
chipseq_peak_13345	chr9	22954018	22954528	+	0	NA	Intergenic	Intergenic	-268803	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding
chipseq_peak_6190	chr17	11564724	11565167	+	0	NA	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	318244	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA
chipseq_peak_9251	chr3	134527398	134528147	+	0	NA	Intergenic	L1MC2|LINE|L1	-104137	NR_040600	75208	Mm.84580	NR_040600	ENSMUSG00000105765	4930539C22Rik	-	RIKEN cDNA 4930539C22 gene	ncRNA
chipseq_peak_10725	chr5	81969851	81970952	+	0	NA	Intergenic	Intergenic	828664	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
chipseq_peak_8298	chr2	143217002	143218429	+	0	NA	Intergenic	Intergenic	139223	NM_020595	57329	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding
chipseq_peak_9675	chr4	31197760	31198827	+	0	NA	Intergenic	Intergenic	533697	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
chipseq_peak_7441	chr2	8507040	8507952	+	0	NA	Intergenic	Intergenic	-682019	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA
chipseq_peak_65	chr1	18371607	18372118	+	0	NA	Intergenic	Intergenic	-106724	NM_001040027	654464	Mm.99530	NM_001040027		Gm15386	BD-17|BD-41|Defb17|Defb41|OTTMUSG00000020946|OTTMUSG00000020948|mBD-41	predicted gene 15386	protein-coding
chipseq_peak_13453	chr9	37615247	37616153	+	0	NA	intron (NM_011734, intron 1 of 9)	intron (NM_011734, intron 1 of 9)	1853	NM_011734	22619	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding
chipseq_peak_11567	chr6	64114373	64115013	+	0	NA	intron (NM_008167, intron 8 of 15)	intron (NM_008167, intron 8 of 15)	-614453	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
chipseq_peak_8811	chr3	65612399	65612803	+	0	NA	Intergenic	Intergenic	-46687	NR_106200	102465905		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA
chipseq_peak_10479	chr5	49090157	49090553	+	0	NA	intron (NM_001199244, intron 1 of 7)	intron (NM_001199244, intron 1 of 7)	195304	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
chipseq_peak_2201	chr11	25709909	25711227	+	0	NA	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	384461	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
chipseq_peak_1690	chr10	69892368	69893125	+	0	NA	intron (NM_170690, intron 17 of 41)	intron (NM_170690, intron 17 of 41)	-32786	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
chipseq_peak_10512	chr5	54796919	54797249	+	0	NA	Intergenic	Intergenic	447092	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
chipseq_peak_13021	chr8	78847089	78847880	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-26332	NM_001191004	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
chipseq_peak_4737	chr14	119789133	119790097	+	0	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	40388	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA
chipseq_peak_7913	chr2	77589322	77589913	+	0	NA	intron (NM_178723, intron 3 of 9)	intron (NM_178723, intron 3 of 9)	-69951	NM_001113400	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding
chipseq_peak_3117	chr12	70052648	70053285	+	0	NA	intron (NM_001286080, intron 12 of 29)	intron (NM_001286080, intron 12 of 29)	49888	NM_001081453	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding
chipseq_peak_6044	chr16	77850803	77852745	+	0	NA	Intergenic	Intergenic	205501	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
chipseq_peak_10888	chr5	111003147	111004290	+	0	NA	promoter-TSS (NR_030482)	promoter-TSS (NR_030482)	-426	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA
chipseq_peak_13181	chr8	109416592	109419373	+	0	NA	Intergenic	Intergenic	-76045	NM_019938	56523	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding
chipseq_peak_5830	chr16	63037046	63038937	+	0	NA	Intergenic	Intergenic	183684	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
chipseq_peak_10648	chr5	71898259	71898552	+	0	NA	intron (NM_008069, intron 4 of 8)	intron (NM_008069, intron 4 of 8)	198389	NM_008069	14400	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding
chipseq_peak_11462	chr6	47231137	47231951	+	0	NA	intron (NM_001004357, intron 21 of 23)	RMER15|LTR|ERVL	-12852	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
chipseq_peak_886	chr1	143903210	143904575	+	0	NA	Intergenic	Intergenic	100257	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding
chipseq_peak_5792	chr16	55807593	55808022	+	0	NA	Intergenic	Intergenic	14331	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding
chipseq_peak_6631	chr18	21193354	21193755	+	0	NA	intron (NM_001033445, intron 2 of 5)	intron (NM_001033445, intron 2 of 5)	106585	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem	C86169|Fam59a|Gm944|mKIAA4238	GRB2 associated, regulator of MAPK1	protein-coding
chipseq_peak_13520	chr9	48267902	48268652	+	0	NA	Intergenic	Intergenic	72621	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding
chipseq_peak_5066	chr15	44774278	44776546	+	0	NA	intron (NM_176998, intron 1 of 7)	intron (NM_176998, intron 1 of 7)	-12351	NR_040309	69659	Mm.352401	NR_040309	ENSMUSG00000097102	2310069G16Rik	-	RIKEN cDNA 2310069G16 gene	ncRNA
chipseq_peak_1351	chr10	25145823	25146403	+	0	NA	Intergenic	Intergenic	153050	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding
chipseq_peak_10750	chr5	84263912	84265893	+	0	NA	intron (NM_007937, intron 3 of 15)	intron (NM_007937, intron 3 of 15)	152480	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_6891	chr18	57822545	57823239	+	0	NA	Intergenic	Intergenic	-55786	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding
chipseq_peak_13754	chr9	91798268	91798908	+	0	NA	Intergenic	Intergenic	-394348	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding
chipseq_peak_13965	chrX	10268546	10269543	+	0	NA	intron (NM_008769, intron 3 of 9)	intron (NM_008769, intron 3 of 9)	16739	NM_008769	18416	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding
chipseq_peak_8624	chr3	39886241	39886755	+	0	NA	Intergenic	Intergenic	636414	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA
chipseq_peak_11734	chr6	101211340	101211799	+	0	NA	intron (NM_018884, intron 3 of 9)	intron (NM_018884, intron 3 of 9)	166328	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
chipseq_peak_11023	chr5	131775144	131775631	+	0	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	-104882	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_838	chr1	138058640	138059146	+	0	NA	Intergenic	Intergenic	92254	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA
chipseq_peak_5466	chr16	5501907	5502306	+	0	NA	Intergenic	Intergenic	-246150	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
chipseq_peak_8198	chr2	134929440	134929860	+	0	NA	intron (NM_019677, intron 2 of 32)	intron (NM_019677, intron 2 of 32)	143486	NM_019677	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding
chipseq_peak_4513	chr14	88800240	88802412	+	0	NA	Intergenic	Intergenic	-329930	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_425	chr1	59535480	59535956	+	0	NA	intron (NM_001013771, intron 2 of 19)	intron (NM_001013771, intron 2 of 19)	19454	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding
chipseq_peak_11953	chr6	139238519	139239222	+	0	NA	Intergenic	Intergenic	83706	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA
chipseq_peak_7974	chr2	92060981	92061874	+	0	NA	Intergenic	L1ME3C|LINE|L1	-37257	NM_011957	26427	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding
chipseq_peak_1280	chr10	13620556	13620985	+	0	NA	Intergenic	Intergenic	-67628	NM_019961	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding
chipseq_peak_4939	chr15	28466705	28468108	+	0	NA	intron (NM_133365, intron 78 of 78)	intron (NM_133365, intron 78 of 78)	263640	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
chipseq_peak_10835	chr5	99438269	99438934	+	0	NA	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-185674	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000029333	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding
chipseq_peak_1011	chr1	165934512	165936286	+	0	NA	promoter-TSS (NM_198933)	promoter-TSS (NM_198933)	-451	NM_198933	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding
chipseq_peak_7299	chr19	52406492	52407237	+	0	NA	Intergenic	Intergenic	142567	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding
chipseq_peak_13562	chr9	52278548	52278992	+	0	NA	Intergenic	Intergenic	-110659	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding
chipseq_peak_3655	chr13	58027068	58028047	+	0	NA	intron (NM_001195075, intron 10 of 16)	L1MA8|LINE|L1	-4357	NR_030544	100124491		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA
chipseq_peak_9064	chr3	107041651	107042047	+	0	NA	intron (NR_033498, intron 1 of 1)	intron (NR_033498, intron 1 of 1)	2345	NR_033498	229694	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA
chipseq_peak_2574	chr11	109278083	109278536	+	0	NA	intron (NM_001165934, intron 2 of 16)	intron (NM_001165934, intron 2 of 16)	19872	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding
chipseq_peak_1523	chr10	46192441	46193017	+	0	NA	Intergenic	Intergenic	-52019	NR_028274	100302593		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA
chipseq_peak_13670	chr9	71959510	71960311	+	0	NA	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-3531	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA
chipseq_peak_2752	chr12	26211384	26212422	+	0	NA	intron (NR_046278, intron 1 of 2)	intron (NR_046278, intron 1 of 2)	636	NR_046278	74930	Mm.398932	NR_046278		4930480M12Rik	-	RIKEN cDNA 4930480M12 gene	ncRNA
chipseq_peak_60	chr1	18168338	18168874	+	0	NA	Intergenic	Intergenic	-31555	NM_030033	78081	Mm.319913	NM_030033	ENSMUSG00000025774	Crisp4	9230112K08Rik	cysteine-rich secretory protein 4	protein-coding
chipseq_peak_2683	chr12	10817530	10817948	+	0	NA	Intergenic	Intergenic	-230074	NR_045860	71457	Mm.95280	NR_045860		7420701I03Rik	-	RIKEN cDNA 7420701I03 gene	ncRNA
chipseq_peak_13764	chr9	93373308	93373865	+	0	NA	Intergenic	Intergenic	-367853	NR_040756	78349	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA
chipseq_peak_11708	chr6	98246424	98246964	+	0	NA	intron (NM_001128092, intron 3 of 3)	intron (NM_001128092, intron 3 of 3)	96060	NM_001128092	330390	Mm.484161	NM_001128092		Gm765	-	predicted gene 765	protein-coding
chipseq_peak_1095	chr1	177053587	177056953	+	0	NA	intron (NM_011785, intron 9 of 12)	intron (NM_011785, intron 9 of 12)	193497	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
chipseq_peak_8843	chr3	68298320	68298702	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	-169672	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
chipseq_peak_4601	chr14	103613740	103614116	+	0	NA	TTS (NM_022886)	TTS (NM_022886)	-36315	NM_198014	105439	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding
chipseq_peak_13693	chr9	77251033	77253591	+	0	NA	intron (NM_027150, intron 1 of 7)	intron (NM_027150, intron 1 of 7)	95558	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding
chipseq_peak_14054	chrX	92710337	92710999	+	0	NA	Intergenic	Intergenic	-111096	NM_173783	215641	Mm.327999	NM_173783	ENSMUSG00000067649	Mageb18	B430216B18Rik	melanoma antigen family B, 18	protein-coding
chipseq_peak_13923	chr9	113471434	113472519	+	0	NA	Intergenic	Intergenic	115176	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_6896	chr18	58188468	58189296	+	0	NA	intron (NM_010181, intron 5 of 64)	intron (NM_010181, intron 5 of 64)	21044	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding
chipseq_peak_1905	chr10	104616454	104616932	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	329424	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA
chipseq_peak_1073	chr1	176443703	176444188	+	0	NA	Intergenic	Intergenic	-168633	NM_176916	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding
chipseq_peak_4763	chr14	124222756	124223891	+	0	NA	intron (NM_207667, intron 1 of 4)	MER58B|DNA|hAT-Charlie	-30777	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding
chipseq_peak_4862	chr15	19356249	19356850	+	0	NA	Intergenic	L1MD|LINE|L1	536220	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
chipseq_peak_9904	chr4	75212094	75213737	+	0	NA	Intergenic	Intergenic	65371	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
chipseq_peak_6638	chr18	21972278	21972843	+	0	NA	intron (NM_027616, intron 20 of 22)	intron (NM_027616, intron 20 of 22)	198836	NM_027616	70950	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding
chipseq_peak_12108	chr7	52475120	52475480	+	0	NA	Intergenic	Intergenic	-459584	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding
chipseq_peak_10224	chr4	150404353	150405283	+	0	NA	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	122902	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding
chipseq_peak_6457	chr17	81360772	81361340	+	0	NA	Intergenic	Intergenic	-295971	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding
chipseq_peak_7496	chr2	20325043	20325331	+	0	NA	intron (NM_001081006, intron 1 of 21)	intron (NM_001081006, intron 1 of 21)	35274	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
chipseq_peak_12016	chr6	148276489	148276783	+	0	NA	intron (NM_198967, intron 11 of 19)	intron (NM_198967, intron 11 of 19)	-64262	NM_026168	67456	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding
chipseq_peak_992	chr1	162819108	162819653	+	0	NA	Intergenic	Intergenic	-6831	NM_144878	226564	Mm.155164	NM_144878	ENSMUSG00000026692	Fmo4	D1Ertd532e	flavin containing monooxygenase 4	protein-coding
chipseq_peak_5475	chr16	6011747	6012478	+	0	NA	intron (NM_021477, intron 1 of 16)	ORR1F|LTR|ERVL-MaLR	36525	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA
chipseq_peak_10300	chr5	14322077	14322442	+	0	NA	Intergenic	Intergenic	-192659	NM_011995	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding
chipseq_peak_6135	chr16	97134837	97135765	+	0	NA	intron (NM_031174, intron 1 of 32)	intron (NM_031174, intron 1 of 32)	35434	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding
chipseq_peak_5038	chr15	43702057	43702474	+	0	NA	Intergenic	Intergenic	167764	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
chipseq_peak_338	chr1	52987109	52987831	+	0	NA	Intergenic	Intergenic	-34630	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding
chipseq_peak_10752	chr5	84359390	84360370	+	0	NA	intron (NM_007937, intron 2 of 15)	B3|SINE|B2	57502	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
chipseq_peak_6747	chr18	35641208	35641586	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	7970	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding
chipseq_peak_13883	chr9	112047238	112048862	+	0	NA	Intergenic	Intergenic	70661	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA
chipseq_peak_13948	chr9	120472229	120472683	+	0	NA	intron (NM_144557, intron 16 of 16)	intron (NM_144557, intron 16 of 16)	-20150	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding
chipseq_peak_12866	chr8	54567162	54567553	+	0	NA	intron (NM_029569, intron 1 of 6)	intron (NM_029569, intron 1 of 6)	17026	NM_029569	76294	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding
chipseq_peak_11137	chr6	5714446	5715985	+	0	NA	Intergenic	Intergenic	-10424	NM_001191025	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding
chipseq_peak_3853	chr13	89305510	89306805	+	0	NA	intron (NM_010103, intron 9 of 9)	intron (NM_010103, intron 9 of 9)	-234479	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding
chipseq_peak_4306	chr14	54602898	54603698	+	0	NA	intron (NM_028890, intron 1 of 6)	CpG	2610	NM_028890	74359	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	-	RIKEN cDNA 4931414P19 gene	protein-coding
chipseq_peak_11643	chr6	86403175	86403984	+	0	NA	promoter-TSS (NM_001164079)	promoter-TSS (NM_001164079)	-640	NM_001164079	21841	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding
chipseq_peak_3199	chr12	78098716	78099287	+	0	NA	Intergenic	Intergenic	-127654	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding
chipseq_peak_1491	chr10	40750394	40751166	+	0	NA	intron (NM_177793, intron 4 of 4)	intron (NM_177793, intron 4 of 4)	67498	NM_177793	327747	Mm.80407	NM_177793	ENSMUSG00000045555	Mettl24	9030224M15Rik	methyltransferase like 24	protein-coding
chipseq_peak_1394	chr10	27880680	27881493	+	0	NA	Intergenic	Intergenic	-193734	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding
chipseq_peak_13393	chr9	28243395	28243845	+	0	NA	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	452351	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
chipseq_peak_2501	chr11	90369618	90369986	+	0	NA	intron (NM_172563, intron 2 of 3)	intron (NM_172563, intron 2 of 3)	21115	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding
chipseq_peak_4721	chr14	117958345	117959434	+	0	NA	intron (NM_011821, intron 7 of 8)	L1MB3|LINE|L1	-5042	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA
chipseq_peak_7032	chr18	79950658	79952318	+	0	NA	Intergenic	Intergenic	-95407	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding
chipseq_peak_11973	chr6	143258764	143261147	+	0	NA	intron (NR_027803, intron 3 of 3)	intron (NR_027803, intron 3 of 3)	14067	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA
chipseq_peak_10044	chr4	93285884	93286501	+	0	NA	Intergenic	Intergenic	49319	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding
chipseq_peak_13925	chr9	113507613	113509251	+	0	NA	intron (NR_040760, intron 2 of 4)	intron (NR_040760, intron 2 of 4)	78720	NR_040760	102688	Mm.394901	NR_040760		AU023762	-	expressed sequence AU023762	ncRNA
chipseq_peak_13888	chr9	112238202	112238719	+	0	NA	intron (NR_033432, intron 1 of 3)	intron (NR_033432, intron 1 of 3)	-3619	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding
chipseq_peak_4469	chr14	81098180	81099181	+	0	NA	Intergenic	Intergenic	1098378	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
chipseq_peak_6826	chr18	52124555	52125166	+	0	NA	Intergenic	L1MA4|LINE|L1	-1314	NR_029788	723830		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA
chipseq_peak_10713	chr5	81136135	81136824	+	0	NA	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	114886	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_7087	chr19	14371248	14371800	+	0	NA	Intergenic	Intergenic	66982	NR_003027	19862		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA
chipseq_peak_2163	chr11	18313777	18314533	+	0	NA	Intergenic	Intergenic	218169	NR_131129	327872		NR_131129		Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA
chipseq_peak_5620	chr16	37714390	37715591	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-60622	NM_026610	68194	Mm.379154	NM_026610		Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding
chipseq_peak_3737	chr13	78937610	78938014	+	0	NA	Intergenic	Intergenic	-738830	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding
chipseq_peak_1074	chr1	176457753	176458134	+	0	NA	Intergenic	Intergenic	-182631	NM_176916	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding
chipseq_peak_12011	chr6	147328964	147329662	+	0	NA	Intergenic	Intergenic	-65300	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding
chipseq_peak_7844	chr2	65946554	65947397	+	0	NA	intron (NM_001290665, intron 1 of 4)	intron (NM_001290665, intron 1 of 4)	15110	NM_001290665	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding
chipseq_peak_10041	chr4	92969922	92970312	+	0	NA	Intergenic	Intergenic	365394	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding
chipseq_peak_2375	chr11	61408782	61409456	+	0	NA	Intergenic	Intergenic	-31044	NM_026183	67473	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding
chipseq_peak_9619	chr4	24574084	24574512	+	0	NA	intron (NM_199467, intron 13 of 23)	intron (NM_199467, intron 13 of 23)	77836	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
chipseq_peak_7211	chr19	30699203	30699584	+	0	NA	intron (NM_011160, intron 8 of 17)	intron (NM_011160, intron 8 of 17)	-149897	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf homolog 1 (Xenopus laevis)	protein-coding
chipseq_peak_1825	chr10	95868164	95868830	+	0	NA	Intergenic	Intergenic	-72166	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding
chipseq_peak_4059	chr13	110539719	110541705	+	0	NA	Intergenic	Intergenic	145668	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding
chipseq_peak_13365	chr9	26076932	26077489	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	595613	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
chipseq_peak_11209	chr6	14130077	14131408	+	0	NA	Intergenic	Intergenic	259173	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
chipseq_peak_2782	chr12	28535737	28536320	+	0	NA	intron (NM_001177964, intron 2 of 8)	intron (NM_001177964, intron 2 of 8)	12309	NM_001177964	68511	Mm.310284	NM_001177964	ENSMUSG00000020633	Dcdc2c	1110015M06Rik	doublecortin domain containing 2C	protein-coding
chipseq_peak_2845	chr12	36110517	36111349	+	0	NA	intron (NM_025840, intron 7 of 11)	intron (NM_025840, intron 7 of 11)	20554	NR_003649	432649	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo
chipseq_peak_10544	chr5	58082377	58084281	+	0	NA	intron (NM_001310608, intron 3 of 3)	intron (NM_001310608, intron 3 of 3)	365248	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding
chipseq_peak_4245	chr14	33895811	33896180	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-27592	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding
chipseq_peak_12422	chr7	109039056	109040100	+	0	NA	intron (NM_001311161, intron 5 of 5)	intron (NM_001311161, intron 5 of 5)	28698	NM_021885	22141	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby candidate gene	protein-coding
chipseq_peak_3447	chr13	16574648	16575013	+	0	NA	Intergenic	MIRc|SINE|MIR	560355	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
chipseq_peak_6058	chr16	79876170	79877618	+	0	NA	Intergenic	RMER12C|LTR|ERVK	-785797	NM_178855	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
chipseq_peak_11861	chr6	113575957	113576921	+	0	NA	intron (NM_001033244, intron 32 of 43)	L2|LINE|L2	24276	NM_027633	70979	Mm.72959	NM_027633	ENSMUSG00000033963	Fancd2os	4931417G12Rik	Fancd2 opposite strand	protein-coding
chipseq_peak_12638	chr8	10999470	11001080	+	0	NA	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-7575	NR_046017	619321	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA
chipseq_peak_7676	chr2	48529580	48529869	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-284385	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_7118	chr19	20128051	20128506	+	0	NA	Intergenic	L1MDa|LINE|L1	262393	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding
chipseq_peak_8134	chr2	120211395	120212329	+	0	NA	intron (NM_177845, intron 1 of 19)	RCHARR1|DNA|hAT-Charlie	33473	NM_177845	329502	Mm.330505	NM_177845	ENSMUSG00000050211	Pla2g4e	2310026J01Rik|C230096D22|Pla2epsilon	phospholipase A2, group IVE	protein-coding
chipseq_peak_57	chr1	17309961	17310578	+	0	NA	Intergenic	RLTR13D1|LTR|ERVK	164896	NM_010267	14545	Mm.18218	NM_010267	ENSMUSG00000025777	Gdap1	-	ganglioside-induced differentiation-associated-protein 1	protein-coding
chipseq_peak_7918	chr2	77825222	77825456	+	0	NA	Intergenic	Intergenic	-8523	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding
chipseq_peak_11054	chr5	133921888	133922715	+	0	NA	Intergenic	L1MB4|LINE|L1	-177447	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
chipseq_peak_441	chr1	63195835	63196717	+	0	NA	intron (NM_146250, intron 2 of 2)	intron (NM_146250, intron 2 of 2)	-4082	NM_001285936	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding
chipseq_peak_5199	chr15	62462633	62463102	+	0	NA	Intergenic	Intergenic	-243416	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
chipseq_peak_13233	chr8	119296221	119296582	+	0	NA	intron (NM_019707, intron 11 of 13)	L1MEf|LINE|L1	-48137	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding
chipseq_peak_12861	chr8	54270006	54270924	+	0	NA	Intergenic	Intergenic	192933	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
chipseq_peak_605	chr1	90733979	90734396	+	0	NA	Intergenic	Intergenic	109784	NM_001243008	12835	Mm.7562	NM_009935	ENSMUSG00000048126	Col6a3	AI507288|Col6a-3	collagen, type VI, alpha 3	protein-coding
chipseq_peak_9684	chr4	31393192	31393728	+	0	NA	Intergenic	Intergenic	-570647	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
chipseq_peak_2374	chr11	61179807	61180699	+	0	NA	Intergenic	L1_Rod|LINE|L1	-5194	NM_001004143	216825	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding
chipseq_peak_5921	chr16	71582978	71583482	+	0	NA	Intergenic	Intergenic	333326	NR_040576	78221	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA
chipseq_peak_10650	chr5	71964732	71966085	+	0	NA	intron (NM_008069, intron 4 of 8)	intron (NM_008069, intron 4 of 8)	202775	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding
chipseq_peak_8957	chr3	81956949	81958023	+	0	NA	TTS (NM_177662)	TTS (NM_177662)	18242	NM_019911	56720	Mm.258622	NM_019911		Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding
chipseq_peak_897	chr1	144626117	144626820	+	0	NA	Intergenic	Intergenic	-58801	NR_110891	624910	Mm.389199	NM_001290269		Rgs21	EG624910	regulator of G-protein signalling 21	protein-coding
chipseq_peak_14027	chrX	68950752	68951590	+	0	NA	Intergenic	Intergenic	-58118	NM_001098842	627927	Mm.391264	NM_001098842	ENSMUSG00000056815	Gm6812	EG627927	predicted gene 6812	protein-coding
chipseq_peak_1836	chr10	97492250	97493390	+	0	NA	intron (NM_007833, intron 2 of 7)	intron (NM_007833, intron 2 of 7)	10489	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding
chipseq_peak_12870	chr8	54742320	54743485	+	0	NA	Intergenic	Intergenic	-18534	NM_001172152	244484	Mm.95281	NM_028220	ENSMUSG00000039375	Wdr17	3010002I12Rik|B230207L18Rik	WD repeat domain 17	protein-coding
chipseq_peak_7330	chr19	58203434	58204024	+	0	NA	Intergenic	Intergenic	-92475	NR_040449	791347	Mm.452208	NR_040449		Gm10007	ENSMUSG00000056739	predicted gene 10007	ncRNA
chipseq_peak_4150	chr14	12812122	12812603	+	0	NA	intron (NM_012061, intron 1 of 28)	intron (NM_012061, intron 1 of 28)	10717	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding
chipseq_peak_11372	chr6	35988773	35989356	+	0	NA	Intergenic	Intergenic	-399020	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding
chipseq_peak_5034	chr15	42856141	42857083	+	0	NA	Intergenic	Intergenic	-179635	NM_009640	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
chipseq_peak_840	chr1	138147822	138149365	+	0	NA	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	26533	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding
chipseq_peak_12629	chr8	10402526	10402991	+	0	NA	intron (NM_001081397, intron 14 of 35)	intron (NM_001081397, intron 14 of 35)	248835	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
chipseq_peak_762	chr1	125760552	125760924	+	0	NA	intron (NM_027677, intron 1 of 1)	intron (NM_027677, intron 1 of 1)	83742	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding
chipseq_peak_9594	chr4	22300610	22302735	+	0	NA	Intergenic	Intergenic	-55871	NR_104379	269514	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding
chipseq_peak_6486	chr17	85356767	85357155	+	0	NA	intron (NM_028576, intron 3 of 10)	intron (NM_028576, intron 3 of 10)	261435	NR_038085	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA
chipseq_peak_2295	chr11	40573265	40573979	+	0	NA	Intergenic	Intergenic	119060	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding
chipseq_peak_2473	chr11	86373608	86374083	+	0	NA	Intergenic	L1ME3A|LINE|L1	-16320	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding
chipseq_peak_8660	chr3	46054792	46056370	+	0	NA	Intergenic	Lx7|LINE|L1	392360	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding
chipseq_peak_9019	chr3	95160046	95160491	+	0	NA	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-152	NR_073551	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding
chipseq_peak_785	chr1	128781206	128781657	+	0	NA	Intergenic	L1MB5|LINE|L1	-189132	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding
chipseq_peak_4449	chr14	79376460	79376805	+	0	NA	intron (NM_025832, intron 6 of 19)	intron (NM_025832, intron 6 of 19)	14036	NM_025832	66897	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding
chipseq_peak_12478	chr7	118593522	118594261	+	0	NA	Intergenic	Intergenic	-3406	NM_001105252	74424	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding
chipseq_peak_8912	chr3	79249949	79250800	+	0	NA	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	37455	NR_045502	70924	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA
chipseq_peak_1902	chr10	104209545	104210974	+	0	NA	Intergenic	Intergenic	16217	NM_001270898	100861880	Mm.441727	NM_001270898	ENSMUSG00000091779	Gm21293	-	predicted gene, 21293	protein-coding
chipseq_peak_1201	chr1	193447544	193447949	+	0	NA	Intergenic	Intergenic	59784	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA
chipseq_peak_12789	chr8	43051294	43051721	+	0	NA	Intergenic	L1MA5|LINE|L1	89979	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding
chipseq_peak_12324	chr7	91217605	91218741	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	127387	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
chipseq_peak_6379	chr17	68002816	68003421	+	0	NA	intron (NM_172964, intron 1 of 17)	intron (NM_172964, intron 1 of 17)	990	NM_172964	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding
chipseq_peak_2485	chr11	87125904	87126898	+	0	NA	promoter-TSS (NM_197987)	promoter-TSS (NM_197987)	-674	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding
chipseq_peak_11647	chr6	87250737	87251805	+	0	NA	intron (NM_054041, intron 10 of 17)	intron (NM_054041, intron 10 of 17)	84504	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding
chipseq_peak_9305	chr3	142129256	142129945	+	0	NA	intron (NM_001277216, intron 1 of 11)	intron (NM_001277216, intron 1 of 11)	39628	NM_001277217	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding
chipseq_peak_2215	chr11	26583371	26584104	+	0	NA	intron (NM_001252447, intron 2 of 11)	intron (NM_001252447, intron 2 of 11)	10183	NM_001252447	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding
chipseq_peak_4576	chr14	96908856	96909322	+	0	NA	Intergenic	Intergenic	-390055	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
chipseq_peak_5227	chr15	64831626	64832024	+	0	NA	intron (NM_001291903, intron 2 of 16)	intron (NM_001291903, intron 2 of 16)	90471	NM_009623	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding
chipseq_peak_3950	chr13	99496214	99496795	+	0	NA	intron (NM_008634, intron 2 of 6)	B2_Mm1t|SINE|B2	20098	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding
chipseq_peak_5855	chr16	64197565	64198885	+	0	NA	Intergenic	Intergenic	280909	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding
chipseq_peak_10771	chr5	86065302	86066896	+	0	NA	promoter-TSS (NM_007683)	promoter-TSS (NM_007683)	-516	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
chipseq_peak_4161	chr14	15563877	15565192	+	0	NA	Intergenic	Intergenic	-125547	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding
chipseq_peak_8940	chr3	80697441	80698783	+	0	NA	intron (NM_001039195, intron 12 of 12)	intron (NM_001039195, intron 12 of 12)	104679	NM_001039195	14800	Mm.220224	NM_013540		Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding
chipseq_peak_6992	chr18	70371796	70372343	+	0	NA	Intergenic	Intergenic	-100385	NM_029019	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding
chipseq_peak_13204	chr8	113191271	113192044	+	0	NA	Intergenic	Intergenic	124395	NR_033584	791378	Mm.350576	NR_033584		Gm10280	ENSMUSG00000069883	predicted gene 10280	ncRNA
chipseq_peak_3430	chr13	13751418	13751833	+	0	NA	intron (NM_010748, intron 45 of 52)	intron (NM_010748, intron 45 of 52)	-32434	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
chipseq_peak_12145	chr7	56304232	56304662	+	0	NA	intron (NM_021879, intron 9 of 23)	Lx9|LINE|L1	64676	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p	oculocutaneous albinism II	protein-coding
chipseq_peak_9056	chr3	104480887	104481728	+	0	NA	intron (NM_001310698, intron 9 of 17)	L1MA4|LINE|L1	30611	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding
chipseq_peak_12408	chr7	99965627	99966187	+	0	NA	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	14551	NM_175388	108937	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding
chipseq_peak_2994	chr12	52861947	52862281	+	0	NA	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	162731	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding
chipseq_peak_7046	chr18	86415694	86415973	+	0	NA	intron (NM_144946, intron 4 of 10)	intron (NM_144946, intron 4 of 10)	20881	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
chipseq_peak_5009	chr15	39401713	39402538	+	0	NA	intron (NM_001256382, intron 3 of 26)	intron (NM_001256382, intron 3 of 26)	203839	NM_053271	116838	Mm.309296	NM_053271		Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding
chipseq_peak_10878	chr5	107500011	107501066	+	0	NA	intron (NM_001007574, intron 2 of 5)	intron (NM_001007574, intron 2 of 5)	2759	NM_001168557	231570	Mm.261891	NM_001007574	ENSMUSG00000044060	A830010M20Rik	AI849226|Kiaa1107|mKIAA1107	RIKEN cDNA A830010M20 gene	protein-coding
chipseq_peak_2513	chr11	93391174	93391499	+	0	NA	intron (NM_028296, intron 3 of 8)	intron (NM_028296, intron 3 of 8)	292046	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding
chipseq_peak_766	chr1	126457069	126457994	+	0	NA	intron (NM_176957, intron 3 of 12)	intron (NM_176957, intron 3 of 12)	35396	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding
chipseq_peak_3242	chr12	85987525	85987879	+	0	NA	intron (NM_001081423, intron 29 of 33)	L3|LINE|CR1	91339	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding
chipseq_peak_2729	chr12	16102955	16103302	+	0	NA	Intergenic	Intergenic	-286343	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles homolog 2 (Drosophila)	protein-coding
chipseq_peak_967	chr1	159614776	159615876	+	0	NA	intron (NM_022312, intron 1 of 22)	intron (NM_022312, intron 1 of 22)	91557	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding
chipseq_peak_7519	chr2	29320130	29321284	+	0	NA	Intergenic	Intergenic	-26103	NM_029615	68975	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding
chipseq_peak_2975	chr12	51060976	51061353	+	0	NA	intron (NR_126468, intron 4 of 4)	intron (NR_126468, intron 4 of 4)	56008	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
chipseq_peak_6125	chr16	95695859	95696116	+	0	NA	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-6420	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding
chipseq_peak_1253	chr10	9579503	9580236	+	0	NA	Intergenic	Intergenic	95339	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
chipseq_peak_12769	chr8	40381341	40381597	+	0	NA	intron (NM_030110, intron 13 of 14)	intron (NM_030110, intron 13 of 14)	-42346	NM_178395	70546	Mm.34326	NM_178395		Zdhhc2	5730415P04Rik|6430583A19Rik	zinc finger, DHHC domain containing 2	protein-coding
chipseq_peak_3761	chr13	82081394	82081924	+	0	NA	Intergenic	Intergenic	298367	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_3225	chr12	82382584	82383001	+	0	NA	intron (NM_172579, intron 5 of 20)	intron (NM_172579, intron 5 of 20)	71443	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding
chipseq_peak_9449	chr4	5335108	5335468	+	0	NA	Intergenic	Intergenic	-297040	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA
chipseq_peak_11165	chr6	11604874	11605155	+	0	NA	Intergenic	Intergenic	302432	NM_010886	17992	Mm.415865	NM_010886	ENSMUSG00000029632	Ndufa4	MLRQ	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	protein-coding
chipseq_peak_9210	chr3	124728351	124728660	+	0	NA	Intergenic	Intergenic	-147414	NR_015460	384775	Mm.489851	NR_015460	ENSMUSG00000039174	1700003H04Rik	4930538K10Rik|4933400D22Rik	RIKEN cDNA 1700003H04 gene	ncRNA
chipseq_peak_12988	chr8	68879020	68880242	+	0	NA	promoter-TSS (NM_008509)	promoter-TSS (NM_008509)	-924	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding
chipseq_peak_7593	chr2	43322839	43324299	+	0	NA	Intergenic	Intergenic	-231756	NM_001289593	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding
chipseq_peak_2341	chr11	47803877	47804579	+	0	NA	intron (NR_105801, intron 3 of 3)	intron (NR_105801, intron 3 of 3)	270355	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA
chipseq_peak_7679	chr2	48767748	48768248	+	0	NA	Intergenic	MIRb|SINE|MIR	-46111	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
chipseq_peak_2963	chr12	50538337	50538790	+	0	NA	intron (NM_008858, intron 1 of 18)	intron (NM_008858, intron 1 of 18)	110660	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
chipseq_peak_9951	chr4	79472794	79473659	+	0	NA	Intergenic	Intergenic	879179	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA
chipseq_peak_3701	chr13	70976608	70976882	+	0	NA	Intergenic	Intergenic	93797	NM_029873	77166	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding
chipseq_peak_6193	chr17	11619027	11620070	+	0	NA	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	263641	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA
chipseq_peak_13664	chr9	68347466	68347921	+	0	NA	Intergenic	Intergenic	172507	NR_040737	74951	Mm.60678	NR_040737		4930502A04Rik	-	RIKEN cDNA 4930502A04 gene	ncRNA
chipseq_peak_9795	chr4	51978959	51979357	+	0	NA	intron (NR_040668, intron 2 of 2)	intron (NR_040668, intron 2 of 2)	71952	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA
chipseq_peak_7289	chr19	50514337	50514901	+	0	NA	intron (NM_001252501, intron 1 of 25)	intron (NM_001252501, intron 1 of 25)	164027	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
chipseq_peak_9534	chr4	14375098	14376159	+	0	NA	Intergenic	Intergenic	-84319	NR_131155	100040030	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA
chipseq_peak_4521	chr14	89065471	89065788	+	0	NA	Intergenic	Intergenic	-594233	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding
chipseq_peak_8131	chr2	117774611	117775027	+	0	NA	Intergenic	Intergenic	37983	NR_126427	100504728	Mm.413174	NR_126427		Gm13985	OTTMUSG00000015235	predicted gene 13985	ncRNA
chipseq_peak_13369	chr9	26638626	26638991	+	0	NA	Intergenic	L1MB8|LINE|L1	-95000	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding
chipseq_peak_6876	chr18	55718440	55718976	+	0	NA	Intergenic	Lx5c|LINE|L1	-713424	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
chipseq_peak_4558	chr14	94260521	94261829	+	0	NA	Intergenic	Intergenic	-370506	NM_001271798	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
chipseq_peak_8105	chr2	113997586	113998035	+	0	NA	Intergenic	Intergenic	-15755	NR_028423	320846	Mm.441458	NR_028423	ENSMUSG00000087694	A530058N18Rik	-	RIKEN cDNA A530058N18 gene	ncRNA
chipseq_peak_9166	chr3	120544099	120545963	+	0	NA	intron (NR_130170, intron 12 of 18)	intron (NR_130170, intron 12 of 18)	341701	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
chipseq_peak_6459	chr17	81493395	81493847	+	0	NA	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	244766	NM_011406	20541	Mm.265834	NM_011406		Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding
chipseq_peak_3700	chr13	70968380	70968684	+	0	NA	Intergenic	Intergenic	85584	NM_029873	77166	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding
chipseq_peak_12522	chr7	129096284	129097098	+	0	NA	Intergenic	Intergenic	-160403	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding
chipseq_peak_12260	chr7	78318707	78319163	+	0	NA	intron (NM_182809, intron 12 of 13)	MER58B|DNA|hAT-Charlie	258903	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
chipseq_peak_7717	chr2	53728787	53729109	+	0	NA	Intergenic	Intergenic	356604	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding
chipseq_peak_1540	chr10	49256229	49258006	+	0	NA	intron (NM_010349, intron 12 of 17)	AT_rich|Low_complexity|Low_complexity	-161274	NR_046212	100418235	Mm.185993	NR_046212		C130030K03Rik	-	proteasome (prosome, macropain) subunit, alpha type 6 pseudogene	pseudo
chipseq_peak_6831	chr18	53433016	53433393	+	0	NA	Intergenic	Intergenic	-15197	NM_008908	19038	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding
chipseq_peak_2176	chr11	21528681	21529646	+	0	NA	Intergenic	Lx8|LINE|L1	-17983	NR_028259	237694	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA
chipseq_peak_1334	chr10	20952500	20954576	+	0	NA	intron (NM_026203, intron 1 of 23)	intron (NM_026203, intron 1 of 23)	991	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding
chipseq_peak_7730	chr2	55535161	55535987	+	0	NA	intron (NM_008426, intron 3 of 3)	intron (NM_008426, intron 3 of 3)	99604	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
chipseq_peak_7267	chr19	46396472	46396825	+	0	NA	promoter-TSS (NM_001025391)	promoter-TSS (NM_001025391)	-248	NM_015752	24069	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	suppressor of fused homolog (Drosophila)	protein-coding
chipseq_peak_11084	chr5	142696887	142697414	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-4951	NM_146257	243328	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding
chipseq_peak_3813	chr13	83868840	83870251	+	0	NA	Intergenic	Intergenic	-21663	NR_036594	72677	Mm.245636	NR_036594	ENSMUSG00000100891	2810049E08Rik	-	RIKEN cDNA 2810049E08 gene	ncRNA
chipseq_peak_5699	chr16	45376236	45376638	+	0	NA	Intergenic	Intergenic	32616	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding
chipseq_peak_9500	chr4	12476627	12477085	+	0	NA	Intergenic	Intergenic	-304841	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
chipseq_peak_1066	chr1	175388754	175389518	+	0	NA	intron (NM_001199003, intron 2 of 17)	intron (NM_001199003, intron 2 of 17)	103409	NM_011880	24012	Mm.7956	NM_011880	ENSMUSG00000026527	Rgs7	-	regulator of G protein signaling 7	protein-coding
chipseq_peak_4448	chr14	79158752	79159270	+	0	NA	intron (NM_027906, intron 38 of 44)	intron (NM_027906, intron 38 of 44)	88356	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding
chipseq_peak_12668	chr8	17053133	17053771	+	0	NA	intron (NM_053171, intron 2 of 69)	intron (NM_053171, intron 2 of 69)	481933	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
chipseq_peak_7396	chr2	7310025	7311088	+	0	NA	intron (NM_001110231, intron 2 of 15)	intron (NM_001110231, intron 2 of 15)	85444	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
chipseq_peak_8601	chr3	36484341	36484637	+	0	NA	Intergenic	Intergenic	8552	NM_028183	72282	Mm.55317	NM_028183	ENSMUSG00000027713	1810062G17Rik	-	RIKEN cDNA 1810062G17 gene	protein-coding
chipseq_peak_7329	chr19	58025048	58025431	+	0	NA	intron (NM_181415, intron 27 of 28)	intron (NM_181415, intron 27 of 28)	-25928	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA
chipseq_peak_10737	chr5	83286167	83287035	+	0	NA	intron (NM_153801, intron 8 of 11)	intron (NM_153801, intron 8 of 11)	68594	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding
chipseq_peak_11860	chr6	113099464	113099945	+	0	NA	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	22065	NM_028385	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding
chipseq_peak_10652	chr5	71976340	71977389	+	0	NA	intron (NM_008069, intron 4 of 8)	intron (NM_008069, intron 4 of 8)	191319	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding
chipseq_peak_181	chr1	32347448	32348601	+	0	NA	intron (NM_133235, intron 3 of 8)	intron (NM_133235, intron 3 of 8)	172975	NM_001199956	408192	Mm.485769	NM_001199956		Gm9839	ENSMUSG00000049830|Senp15	predicted gene 9839	protein-coding
chipseq_peak_3057	chr12	62479715	62480492	+	0	NA	Intergenic	L1MC1|LINE|L1	-207684	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA
chipseq_peak_10957	chr5	120235504	120235937	+	0	NA	Intergenic	Intergenic	-96457	NR_045793	100503427	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	ENSMUSG00000072671	predicted gene 10390	ncRNA
chipseq_peak_13235	chr8	120264824	120265317	+	0	NA	Intergenic	Intergenic	-36840	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA
chipseq_peak_5642	chr16	40316251	40317221	+	0	NA	Intergenic	Intergenic	-1216606	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_3124	chr12	70348077	70348591	+	0	NA	promoter-TSS (NM_001110203)	promoter-TSS (NM_001110203)	-720	NM_001286386	94090	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding
chipseq_peak_3332	chr12	105124023	105124839	+	0	NA	Intergenic	RMER16-int|LTR|ERVK	-22602	NM_013775	27381	Mm.103653	NM_013775	ENSMUSG00000060863	Tcl1b2	-	T cell leukemia/lymphoma 1B, 2	protein-coding
chipseq_peak_8741	chr3	54835193	54835836	+	0	NA	Intergenic	Intergenic	-27723	NM_133231	170767	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding
chipseq_peak_2032	chr10	118824704	118825667	+	0	NA	Intergenic	Intergenic	43718	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
chipseq_peak_735	chr1	119884188	119884599	+	0	NA	Intergenic	Intergenic	28775	NM_175106	66343	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding
chipseq_peak_2086	chr10	125347179	125347530	+	0	NA	Intergenic	Intergenic	-18819	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
chipseq_peak_13884	chr9	112068156	112068920	+	0	NA	intron (NM_001177618, intron 17 of 18)	intron (NM_001177618, intron 17 of 18)	50173	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA
chipseq_peak_9330	chr3	145651698	145652139	+	0	NA	Intergenic	Intergenic	-1933	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding
chipseq_peak_12289	chr7	87884595	87885235	+	0	NA	intron (NM_001143834, intron 4 of 10)	intron (NM_001143834, intron 4 of 10)	300747	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding
chipseq_peak_1499	chr10	43076741	43077122	+	0	NA	intron (NM_175407, intron 4 of 6)	intron (NM_175407, intron 4 of 6)	97599	NM_175407	109205	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis-binding protein homolog (Drosophila)	protein-coding
chipseq_peak_2314	chr11	42132009	42132885	+	0	NA	3' UTR (NM_010250, exon 10 of 10)	3' UTR (NM_010250, exon 10 of 10)	50483	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding
chipseq_peak_11028	chr5	131833526	131833833	+	0	NA	intron (NM_177047, intron 4 of 18)	MER58C|DNA|hAT-Charlie	-46590	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
chipseq_peak_8556	chr3	28457403	28457779	+	0	NA	intron (NM_001163007, intron 2 of 31)	intron (NM_001163007, intron 2 of 31)	37648	NR_130342	100628591		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA
chipseq_peak_2609	chr11	113335774	113336145	+	0	NA	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-126290	NR_040276	319871	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA
chipseq_peak_4483	chr14	84175199	84176906	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	-267511	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
chipseq_peak_1574	chr10	53596357	53597121	+	0	NA	promoter-TSS (NM_025541)	promoter-TSS (NM_025541)	-222	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding
chipseq_peak_1365	chr10	26711097	26711526	+	0	NA	Intergenic	Intergenic	-36660	NR_033633	667572	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
chipseq_peak_5296	chr15	70412507	70413249	+	0	NA	Intergenic	Intergenic	488645	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
chipseq_peak_7892	chr2	73965705	73966082	+	0	NA	Intergenic	Intergenic	-54567	NM_175015	228033	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding
chipseq_peak_10943	chr5	116941503	116941837	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	174323	NM_178622	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding
chipseq_peak_13148	chr8	102685023	102685964	+	0	NA	intron (NM_009866, intron 2 of 12)	intron (NM_009866, intron 2 of 12)	99618	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding
chipseq_peak_1457	chr10	37047908	37048302	+	0	NA	Intergenic	Intergenic	73561	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding
chipseq_peak_2027	chr10	118640642	118641536	+	0	NA	Intergenic	Intergenic	-84564	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA
chipseq_peak_3302	chr12	97978368	97978692	+	0	NA	Intergenic	L2a|LINE|L2	280929	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding
chipseq_peak_9112	chr3	117152941	117154066	+	0	NA	Intergenic	Intergenic	-75738	NR_038029	433646	Mm.158997	NR_038029	ENSMUSG00000028009	1700061I17Rik	-	RIKEN cDNA 1700061I17 gene	ncRNA
chipseq_peak_6374	chr17	66276671	66277076	+	0	NA	Intergenic	Intergenic	153353	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding
chipseq_peak_10607	chr5	66728600	66729267	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-16907	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding
chipseq_peak_8913	chr3	79310236	79310961	+	0	NA	Intergenic	Intergenic	-34778	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding
chipseq_peak_3943	chr13	99100274	99100644	+	0	NA	Intergenic	Intergenic	-12538	NR_045495	69603	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA
chipseq_peak_6913	chr18	64706523	64706949	+	0	NA	Intergenic	RMER15-int|LTR|ERVL	-45736	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding
chipseq_peak_778	chr1	127989884	127990544	+	0	NA	intron (NM_001285945, intron 11 of 20)	MLT-int|LTR|ERVL-MaLR	112257	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding
chipseq_peak_10712	chr5	81085362	81085824	+	0	NA	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	64000	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
chipseq_peak_7871	chr2	68911564	68911875	+	0	NA	intron (NM_172856, intron 1 of 9)	intron (NM_172856, intron 1 of 9)	50162	NM_172856	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding
chipseq_peak_10338	chr5	19522089	19522455	+	0	NA	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	295226	NM_001170746	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
chipseq_peak_4155	chr14	13649846	13650234	+	0	NA	Intergenic	MIR|SINE|MIR	-20836	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding
chipseq_peak_4063	chr13	110692015	110692403	+	0	NA	Intergenic	Intergenic	-211290	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA
chipseq_peak_2281	chr11	39254704	39255890	+	0	NA	Intergenic	Intergenic	134928	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
chipseq_peak_744	chr1	122463819	122464899	+	0	NA	Intergenic	Intergenic	-896379	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
chipseq_peak_4349	chr14	64311058	64311433	+	0	NA	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	105711	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
chipseq_peak_11174	chr6	12352210	12352840	+	0	NA	intron (NM_001164805, intron 13 of 26)	intron (NM_001164805, intron 13 of 26)	-242945	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo
chipseq_peak_12196	chr7	71373973	71374453	+	0	NA	Intergenic	Intergenic	-535482	NR_130995	78156	Mm.243818	NR_130995		4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA
chipseq_peak_6596	chr18	15009144	15009432	+	0	NA	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	20293	NR_045372	74456	Mm.391075	NR_045372		4933424G05Rik	-	RIKEN cDNA 4933424G05 gene	ncRNA
chipseq_peak_4980	chr15	34281312	34281947	+	0	NA	intron (NM_033521, intron 6 of 6)	intron (NM_033521, intron 6 of 6)	-25052	NM_016762	17181	Mm.396856	NM_016762	ENSMUSG00000022324	Matn2	Crtm2|matrilin-2	matrilin 2	protein-coding
chipseq_peak_11795	chr6	105102650	105103078	+	0	NA	Intergenic	Intergenic	389804	NR_040297	100503536	Mm.366960	NR_040297	ENSMUSG00000108237	Gm19757	-	predicted gene, 19757	ncRNA
chipseq_peak_6490	chr17	86433736	86434095	+	0	NA	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-146737	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA
chipseq_peak_4867	chr15	19806807	19807634	+	0	NA	Intergenic	Charlie9|DNA|hAT-Charlie	859530	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
chipseq_peak_4281	chr14	47462925	47463612	+	0	NA	Intergenic	Intergenic	-9293	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding
chipseq_peak_3670	chr13	59489153	59489846	+	0	NA	intron (NM_001284219, intron 16 of 24)	intron (NM_001284219, intron 16 of 24)	54952	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding
chipseq_peak_3141	chr12	71959718	71959985	+	0	NA	exon (NM_172464, exon 17 of 26)	exon (NM_172464, exon 17 of 26)	70308	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding
chipseq_peak_2043	chr10	121472722	121473062	+	0	NA	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	3358	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding
chipseq_peak_10369	chr5	24046169	24046731	+	0	NA	intron (NR_037304, intron 1 of 4)	intron (NR_037304, intron 1 of 4)	-15760	NM_053090	84652	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding
chipseq_peak_5471	chr16	5766454	5767753	+	0	NA	Intergenic	Intergenic	-117690	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
chipseq_peak_7318	chr19	57306043	57306876	+	0	NA	Intergenic	Intergenic	32499	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA
chipseq_peak_7504	chr2	22165944	22166343	+	0	NA	Intergenic	Intergenic	-61360	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding
chipseq_peak_2791	chr12	29755164	29756223	+	0	NA	intron (NM_008666, intron 4 of 24)	intron (NM_008666, intron 4 of 24)	-69248	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA
chipseq_peak_712	chr1	111830749	111831282	+	0	NA	Intergenic	Intergenic	33903	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
chipseq_peak_7946	chr2	80128917	80129706	+	0	NA	promoter-TSS (NM_016744)	promoter-TSS (NM_016744)	101	NM_001159582	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding
chipseq_peak_2877	chr12	39599311	39599848	+	0	NA	Intergenic	Intergenic	437797	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
chipseq_peak_4298	chr14	49785884	49786129	+	0	NA	Intergenic	B3|SINE|B2	-2639	NM_026142	67419	Mm.318710	NM_026142	ENSMUSG00000036242	3632451O06Rik	AU067705	RIKEN cDNA 3632451O06 gene	protein-coding
chipseq_peak_1119	chr1	177493951	177494722	+	0	NA	Intergenic	Intergenic	48515	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
chipseq_peak_7488	chr2	17504784	17505328	+	0	NA	intron (NM_028757, intron 4 of 6)	intron (NM_028757, intron 4 of 6)	-58458	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA
chipseq_peak_4890	chr15	21407179	21407900	+	0	NA	intron (NM_001008420, intron 3 of 11)	intron (NM_001008420, intron 3 of 11)	296087	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
chipseq_peak_9350	chr3	148938713	148940143	+	0	NA	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	15207	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
chipseq_peak_5403	chr15	94249356	94250652	+	0	NA	intron (NR_045629, intron 2 of 3)	intron (NR_045629, intron 2 of 3)	2802	NR_045629	328594	Mm.135523	NR_045629		D630010B17Rik	Gm811	RIKEN cDNA D630010B17 gene	ncRNA
chipseq_peak_6222	chr17	30389088	30389448	+	0	NA	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	6912	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo
chipseq_peak_2100	chr10	126808799	126809963	+	0	NA	Intergenic	Intergenic	-15671	NR_131015	75813	Mm.159583	NR_131015		4930484H19Rik	-	RIKEN cDNA 4930484H19 gene	ncRNA
chipseq_peak_9797	chr4	52341091	52342095	+	0	NA	Intergenic	Intergenic	97371	NR_045175	72648	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA
chipseq_peak_14028	chrX	69007522	69009698	+	0	NA	Intergenic	Intergenic	-115557	NM_001098842	627927	Mm.391264	NM_001098842	ENSMUSG00000056815	Gm6812	EG627927	predicted gene 6812	protein-coding
chipseq_peak_10457	chr5	45158515	45159591	+	0	NA	intron (NR_131933, intron 4 of 5)	Lx8|LINE|L1	192852	NR_073013	75783	Mm.218472	NR_073013	ENSMUSG00000062496	4930431F12Rik	-	RIKEN cDNA 4930431F12 gene	ncRNA
chipseq_peak_10341	chr5	19779146	19780457	+	0	NA	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-127717	NM_001170745	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
chipseq_peak_8223	chr2	137693944	137694379	+	0	NA	Intergenic	L2c|LINE|L2	-562423	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
chipseq_peak_4714	chr14	117300633	117301687	+	0	NA	intron (NM_011821, intron 2 of 8)	B4|SINE|B4	375863	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_2740	chr12	25666916	25667369	+	0	NA	Intergenic	Intergenic	537968	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA
chipseq_peak_13023	chr8	79151095	79152100	+	0	NA	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	96986	NM_026315	67687	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding
chipseq_peak_8285	chr2	142553192	142553605	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	348066	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
chipseq_peak_5568	chr16	27722956	27724534	+	0	NA	Intergenic	Intergenic	-126185	NR_033475	100038623	Mm.387135	NR_033475		Gm10823	ENSMUSG00000075290	predicted gene 10823	ncRNA
chipseq_peak_12262	chr7	78797949	78798358	+	0	NA	Intergenic	Charlie5|DNA|hAT-Charlie	15022	NM_026498	67994	Mm.297033	NM_026498	ENSMUSG00000030611	Mrps11	0710005I03Rik|C79873	mitochondrial ribosomal protein S11	protein-coding
chipseq_peak_3572	chr13	43990823	43991320	+	0	NA	Intergenic	Intergenic	-130096	NR_045285	328235	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA
chipseq_peak_3134	chr12	71606260	71607014	+	0	NA	Intergenic	Intergenic	66030	NR_045941	73815	Mm.416916	NR_045941		4930404H11Rik	-	RIKEN cDNA 4930404H11 gene	ncRNA
chipseq_peak_12439	chr7	111997362	111998011	+	0	NA	Intergenic	Intergenic	-25820	NM_177249	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding
chipseq_peak_740	chr1	121399308	121400534	+	0	NA	Intergenic	Intergenic	-31146	NM_029955	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding
chipseq_peak_8115	chr2	114685896	114687622	+	0	NA	Intergenic	Intergenic	-31831	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
chipseq_peak_5302	chr15	71015857	71016544	+	0	NA	Intergenic	Intergenic	711638	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
chipseq_peak_2114	chr11	4984316	4984786	+	0	NA	intron (NM_001243043, intron 1 of 22)	MER2|DNA|TcMar-Tigger	-2273	NM_001243044	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding
chipseq_peak_3502	chr13	28847427	28847962	+	0	NA	intron (NR_045053, intron 2 of 8)	intron (NR_045053, intron 2 of 8)	37728	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA
chipseq_peak_9852	chr4	65958745	65959184	+	0	NA	intron (NM_207109, intron 6 of 22)	intron (NM_207109, intron 6 of 22)	353978	NM_001161782	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding
chipseq_peak_10184	chr4	128450116	128450418	+	0	NA	intron (NM_001281955, intron 27 of 70)	MIRb|SINE|MIR	159831	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding
chipseq_peak_480	chr1	69996977	69997263	+	0	NA	intron (NM_029160, intron 11 of 16)	intron (NM_029160, intron 11 of 16)	45505	NM_025728	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding
chipseq_peak_5651	chr16	41262227	41262577	+	0	NA	Intergenic	Intergenic	-270940	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
chipseq_peak_6699	chr18	30127119	30128136	+	0	NA	Intergenic	Intergenic	-145269	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
chipseq_peak_4767	chr15	3296104	3296549	+	0	NA	intron (NM_001166063, intron 3 of 8)	intron (NM_001166063, intron 3 of 8)	7200	NM_001166063	100039139	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	ENSMUSG00000071814	coiled-coil domain containing 152	protein-coding
chipseq_peak_6788	chr18	44808448	44808730	+	0	NA	intron (NM_001085373, intron 1 of 18)	L1MB8|LINE|L1	3593	NM_001085373	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding
chipseq_peak_13944	chr9	120437230	120437687	+	0	NA	intron (NM_144557, intron 10 of 16)	intron (NM_144557, intron 10 of 16)	-55148	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding
chipseq_peak_11523	chr6	55646169	55649402	+	0	NA	Intergenic	Intergenic	33478	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding
chipseq_peak_7313	chr19	57098415	57098861	+	0	NA	intron (NM_001290813, intron 6 of 20)	intron (NM_001290813, intron 6 of 20)	20386	NM_001103178	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding
chipseq_peak_4708	chr14	116783279	116784415	+	0	NA	Intergenic	Intergenic	-141450	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
chipseq_peak_9762	chr4	46846885	46848091	+	0	NA	intron (NM_001081141, intron 2 of 18)	intron (NM_001081141, intron 2 of 18)	144226	NM_001081141	242425	Mm.101909	NM_001081141		Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding
chipseq_peak_2348	chr11	50456112	50457495	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-25692	NM_172557	216724	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding
chipseq_peak_12560	chr7	135641543	135642489	+	0	NA	intron (NM_001316679, intron 1 of 19)	intron (NM_001316679, intron 1 of 19)	-9883	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding
chipseq_peak_12103	chr7	51659198	51659568	+	0	NA	intron (NM_080853, intron 7 of 11)	intron (NM_080853, intron 7 of 11)	37553	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding
chipseq_peak_2333	chr11	45975946	45976611	+	0	NA	Intergenic	L1MA4|LINE|L1	-4032	NM_173384	214105	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding
chipseq_peak_3757	chr13	81870868	81873223	+	0	NA	Intergenic	Intergenic	88753	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
chipseq_peak_10390	chr5	35137507	35138876	+	0	NA	Intergenic	Intergenic	-32494	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding
chipseq_peak_10074	chr4	99615318	99615630	+	0	NA	Intergenic	Intergenic	-40825	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding
chipseq_peak_3571	chr13	43939057	43939849	+	0	NA	Intergenic	Intergenic	154341	NM_009856	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding
chipseq_peak_11482	chr6	50067031	50067322	+	0	NA	Intergenic	L1M2|LINE|L1	-43065	NM_001164734	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding
chipseq_peak_7621	chr2	44190914	44191449	+	0	NA	intron (NM_001301832, intron 12 of 14)	intron (NM_001301832, intron 12 of 14)	-125857	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA
chipseq_peak_11935	chr6	137317091	137318831	+	0	NA	intron (NM_001164401, intron 1 of 25)	intron (NM_001164401, intron 1 of 25)	65662	NM_001164401	19277	Mm.186361	NM_011216		Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
chipseq_peak_1822	chr10	95705645	95706262	+	0	NA	Intergenic	Intergenic	-141786	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding
chipseq_peak_6889	chr18	57549165	57549624	+	0	NA	intron (NR_015494, intron 1 of 2)	intron (NR_015494, intron 1 of 2)	2473	NR_027945	75084	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA
chipseq_peak_9324	chr3	144318857	144319690	+	0	NA	Intergenic	L3|LINE|CR1	-114018	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding
chipseq_peak_12037	chr7	19301051	19301541	+	0	NA	Intergenic	tRNA-SeC(e)-TGA|tRNA|tRNA	8749	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding
chipseq_peak_551	chr1	78864760	78865269	+	0	NA	Intergenic	Intergenic	48065	NM_021342	57814	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding
chipseq_peak_3299	chr12	97598275	97598712	+	0	NA	Intergenic	MER90|LTR|ERV1	660966	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding