Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1193)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47094)	% of Background Sequences with Motif
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-38	-8.818e+01	0.0000	353.0	29.59%	6951.1	14.76%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-26	-6.147e+01	0.0000	356.0	29.84%	8060.4	17.11%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-26	-6.095e+01	0.0000	313.0	26.24%	6739.0	14.30%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-26	-6.018e+01	0.0000	407.0	34.12%	9776.1	20.75%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-7	-1.741e+01	0.0000	211.0	17.69%	5752.8	12.21%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-5	-1.238e+01	0.0002	281.0	23.55%	8650.2	18.36%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-5	-1.168e+01	0.0003	276.0	23.13%	8548.4	18.15%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-4	-1.094e+01	0.0006	233.0	19.53%	7094.5	15.06%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-4	-1.077e+01	0.0006	407.0	34.12%	13485.1	28.62%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-9.395e+00	0.0022	279.0	23.39%	8933.6	18.96%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-9.143e+00	0.0026	348.0	29.17%	11512.1	24.44%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-3	-8.609e+00	0.0040	220.0	18.44%	6897.9	14.64%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-3	-8.534e+00	0.0040	460.0	38.56%	15838.6	33.62%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-3	-8.329e+00	0.0046	374.0	31.35%	12609.9	26.77%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-3	-8.185e+00	0.0049	301.0	25.23%	9908.4	21.03%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-7.671e+00	0.0077	382.0	32.02%	13019.0	27.64%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-7.521e+00	0.0084	403.0	33.78%	13839.2	29.38%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-7.485e+00	0.0084	151.0	12.66%	4578.6	9.72%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-3	-7.128e+00	0.0111	127.0	10.65%	3779.6	8.02%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-6.433e+00	0.0212	108.0	9.05%	3193.3	6.78%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-2	-6.392e+00	0.0212	383.0	32.10%	13283.0	28.20%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-6.309e+00	0.0218	732.0	61.36%	26931.7	57.17%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-6.269e+00	0.0218	351.0	29.42%	12093.7	25.67%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-6.170e+00	0.0230	453.0	37.97%	16004.5	33.97%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-5.980e+00	0.0267	166.0	13.91%	5294.2	11.24%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-5.942e+00	0.0267	506.0	42.41%	18100.1	38.42%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-2	-5.672e+00	0.0337	144.0	12.07%	4546.0	9.65%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2	-5.414e+00	0.0420	488.0	40.91%	17517.1	37.18%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-2	-5.414e+00	0.0420	83.0	6.96%	2435.6	5.17%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-5.337e+00	0.0423	66.0	5.53%	1865.5	3.96%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-5.258e+00	0.0443	143.0	11.99%	4565.8	9.69%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-5.125e+00	0.0491	130.0	10.90%	4117.1	8.74%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-5.040e+00	0.0518	354.0	29.67%	12449.6	26.43%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-2	-4.924e+00	0.0565	502.0	42.08%	18174.7	38.58%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-4.913e+00	0.0565	93.0	7.80%	2834.4	6.02%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-4.883e+00	0.0565	216.0	18.11%	7290.7	15.48%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-4.817e+00	0.0577	137.0	11.48%	4410.7	9.36%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-4.664e+00	0.0655	234.0	19.61%	7999.7	16.98%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-4.515e+00	0.0741	40.0	3.35%	1069.4	2.27%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.423e+00	0.0792	104.0	8.72%	3281.8	6.97%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-4.361e+00	0.0822	48.0	4.02%	1345.8	2.86%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-4.220e+00	0.0924	716.0	60.02%	26787.0	56.86%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-4.206e+00	0.0924	478.0	40.07%	17419.7	36.98%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-4.101e+00	0.0993	148.0	12.41%	4918.8	10.44%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-4.095e+00	0.0993	32.0	2.68%	839.6	1.78%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-3.937e+00	0.1119	182.0	15.26%	6200.3	13.16%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.878e+00	0.1163	626.0	52.47%	23309.8	49.48%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.827e+00	0.1198	36.0	3.02%	989.4	2.10%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.749e+00	0.1269	138.0	11.57%	4610.3	9.79%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.728e+00	0.1269	131.0	10.98%	4357.1	9.25%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.696e+00	0.1285	390.0	32.69%	14146.5	30.03%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-3.602e+00	0.1385	149.0	12.49%	5040.7	10.70%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.557e+00	0.1421	57.0	4.78%	1728.8	3.67%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.458e+00	0.1540	176.0	14.75%	6069.9	12.88%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-3.441e+00	0.1540	34.0	2.85%	953.5	2.02%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.389e+00	0.1590	962.0	80.64%	36951.5	78.44%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-3.294e+00	0.1718	57.0	4.78%	1757.7	3.73%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.248e+00	0.1768	177.0	14.84%	6149.2	13.05%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.144e+00	0.1929	484.0	40.57%	17953.3	38.11%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.095e+00	0.1993	440.0	36.88%	16254.2	34.50%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.066e+00	0.2017	108.0	9.05%	3626.0	7.70%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.028e+00	0.2060	473.0	39.65%	17560.4	37.28%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.951e+00	0.2192	85.0	7.12%	2804.9	5.95%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.863e+00	0.2354	435.0	36.46%	16132.1	34.24%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.789e+00	0.2496	435.0	36.46%	16156.1	34.29%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.742e+00	0.2578	17.0	1.42%	444.2	0.94%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.631e+00	0.2837	544.0	45.60%	20473.1	43.46%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-2.623e+00	0.2837	248.0	20.79%	8988.7	19.08%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.571e+00	0.2926	97.0	8.13%	3307.9	7.02%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.563e+00	0.2926	116.0	9.72%	4013.2	8.52%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.556e+00	0.2926	39.0	3.27%	1208.0	2.56%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-2.457e+00	0.3143	429.0	35.96%	16035.9	34.04%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.427e+00	0.3192	102.0	8.55%	3519.9	7.47%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.404e+00	0.3224	9.0	0.75%	210.4	0.45%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.294e+00	0.3549	16.0	1.34%	441.8	0.94%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.285e+00	0.3549	209.0	17.52%	7593.5	16.12%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.256e+00	0.3594	50.0	4.19%	1638.7	3.48%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.246e+00	0.3594	310.0	25.98%	11488.0	24.39%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.237e+00	0.3594	95.0	7.96%	3296.7	7.00%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.232e+00	0.3594	213.0	17.85%	7761.6	16.48%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.111e+00	0.3947	186.0	15.59%	6764.7	14.36%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.093e+00	0.3969	130.0	10.90%	4641.9	9.85%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.063e+00	0.4041	523.0	43.84%	19864.2	42.17%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.982e+00	0.4330	126.0	10.56%	4518.0	9.59%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.955e+00	0.4396	63.0	5.28%	2162.0	4.59%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.921e+00	0.4497	422.0	35.37%	15965.9	33.89%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.920e+00	0.4497	141.0	11.82%	5102.4	10.83%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.914e+00	0.4497	333.0	27.91%	12499.9	26.53%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.831e+00	0.4755	13.0	1.09%	374.7	0.80%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.831e+00	0.4755	43.0	3.60%	1445.6	3.07%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.794e+00	0.4825	24.0	2.01%	762.3	1.62%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.693e+00	0.5280	402.0	33.70%	15280.0	32.44%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.543e+00	0.6067	66.0	5.53%	2353.6	5.00%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.531e+00	0.6076	24.0	2.01%	793.6	1.68%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.479e+00	0.6334	73.0	6.12%	2632.3	5.59%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.469e+00	0.6334	78.0	6.54%	2824.1	5.99%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.436e+00	0.6476	168.0	14.08%	6287.0	13.35%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.413e+00	0.6558	14.0	1.17%	445.5	0.95%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.365e+00	0.6809	70.0	5.87%	2545.7	5.40%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.351e+00	0.6834	173.0	14.50%	6510.8	13.82%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.285e+00	0.7233	130.0	10.90%	4871.6	10.34%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.242e+00	0.7473	12.0	1.01%	391.0	0.83%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.236e+00	0.7473	118.0	9.89%	4424.6	9.39%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.194e+00	0.7689	30.0	2.51%	1065.3	2.26%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.171e+00	0.7796	203.0	17.02%	7749.3	16.45%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.153e+00	0.7859	156.0	13.08%	5927.5	12.58%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.102e+00	0.8200	12.0	1.01%	405.6	0.86%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.092e+00	0.8206	98.0	8.21%	3699.9	7.85%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.091e+00	0.8206	85.0	7.12%	3196.3	6.78%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.080e+00	0.8206	68.0	5.70%	2543.9	5.40%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.068e+00	0.8206	41.0	3.44%	1508.6	3.20%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.064e+00	0.8206	33.0	2.77%	1203.2	2.55%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.061e+00	0.8206	343.0	28.75%	13284.5	28.20%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.050e+00	0.8206	25.0	2.10%	901.4	1.91%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.050e+00	0.8206	25.0	2.10%	901.4	1.91%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.047e+00	0.8206	11.0	0.92%	374.7	0.80%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.023e+00	0.8206	18.0	1.51%	640.4	1.36%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.005e+00	0.8206	173.0	14.50%	6653.1	14.12%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.661e-01	0.8442	77.0	6.45%	2926.3	6.21%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-9.488e-01	0.8519	247.0	20.70%	9580.9	20.34%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.400e-01	0.8523	19.0	1.59%	691.3	1.47%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-9.298e-01	0.8540	361.0	30.26%	14071.2	29.87%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-9.280e-01	0.8540	12.0	1.01%	426.2	0.90%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-9.232e-01	0.8540	44.0	3.69%	1658.0	3.52%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-9.151e-01	0.8540	269.0	22.55%	10463.6	22.21%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-9.146e-01	0.8540	275.0	23.05%	10699.6	22.71%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-9.091e-01	0.8540	27.0	2.26%	1004.1	2.13%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-9.064e-01	0.8540	272.0	22.80%	10586.3	22.47%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-9.019e-01	0.8540	64.0	5.36%	2441.3	5.18%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-9.019e-01	0.8540	34.0	2.85%	1277.0	2.71%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-8.926e-01	0.8540	23.0	1.93%	853.1	1.81%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.763e-01	0.8540	196.0	16.43%	7618.5	16.17%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.621e-01	0.8540	46.0	3.86%	1752.3	3.72%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-8.460e-01	0.8540	307.0	25.73%	12000.8	25.47%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-8.403e-01	0.8540	14.0	1.17%	515.1	1.09%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.402e-01	0.8540	737.0	61.78%	28967.8	61.49%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-8.329e-01	0.8540	4.0	0.34%	133.4	0.28%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.288e-01	0.8540	212.0	17.77%	8273.4	17.56%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-8.164e-01	0.8540	57.0	4.78%	2195.9	4.66%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-8.060e-01	0.8540	33.0	2.77%	1260.4	2.68%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-8.001e-01	0.8540	40.0	3.35%	1535.1	3.26%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.905e-01	0.8540	60.0	5.03%	2321.8	4.93%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.793e-01	0.8540	65.0	5.45%	2521.8	5.35%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.773e-01	0.8540	74.0	6.20%	2875.2	6.10%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-7.479e-01	0.8619	157.0	13.16%	6154.7	13.06%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-7.478e-01	0.8619	471.0	39.48%	18536.3	39.35%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.467e-01	0.8619	40.0	3.35%	1550.2	3.29%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.458e-01	0.8619	5.0	0.42%	179.8	0.38%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-7.435e-01	0.8619	21.0	1.76%	805.8	1.71%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-7.392e-01	0.8619	3.0	0.25%	102.1	0.22%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.364e-01	0.8619	96.0	8.05%	3757.8	7.98%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-7.284e-01	0.8619	53.0	4.44%	2067.8	4.39%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-7.239e-01	0.8619	97.0	8.13%	3802.6	8.07%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-7.179e-01	0.8619	81.0	6.79%	3174.5	6.74%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-7.135e-01	0.8619	197.0	16.51%	7751.8	16.45%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.992e-01	0.8619	180.0	15.09%	7089.5	15.05%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.887e-01	0.8619	431.0	36.13%	17006.0	36.10%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.541e-01	0.8687	214.0	17.94%	8461.0	17.96%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.289e-01	0.8853	113.0	9.47%	4481.2	9.51%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-6.031e-01	0.9027	101.0	8.47%	4019.4	8.53%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.029e-01	0.9027	751.0	62.95%	29712.4	63.07%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-5.829e-01	0.9098	164.0	13.75%	6531.0	13.86%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.475e-01	0.9368	52.0	4.36%	2095.1	4.45%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-5.450e-01	0.9368	48.0	4.02%	1936.0	4.11%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.369e-01	0.9368	309.0	25.90%	12313.3	26.14%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-5.348e-01	0.9368	3.0	0.25%	121.0	0.26%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.117e-01	0.9476	309.0	25.90%	12336.6	26.19%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.956e-01	0.9573	565.0	47.36%	22480.4	47.72%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-4.769e-01	0.9696	211.0	17.69%	8477.3	17.99%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.728e-01	0.9696	38.0	3.19%	1563.4	3.32%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.660e-01	0.9696	92.0	7.71%	3738.3	7.94%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.307e-01	0.9978	133.0	11.15%	5404.7	11.47%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.288e-01	0.9978	26.0	2.18%	1092.7	2.32%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.261e-01	0.9978	102.0	8.55%	4165.0	8.84%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-4.245e-01	0.9978	194.0	16.26%	7846.0	16.65%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.184e-01	0.9978	82.0	6.87%	3366.4	7.15%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.031e-01	0.9978	51.0	4.27%	2122.1	4.50%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.927e-01	1.0000	64.0	5.36%	2655.8	5.64%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.836e-01	1.0000	30.0	2.51%	1274.9	2.71%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-3.759e-01	1.0000	509.0	42.67%	20409.8	43.32%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-3.731e-01	1.0000	101.0	8.47%	4163.6	8.84%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.711e-01	1.0000	34.0	2.85%	1444.4	3.07%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-3.587e-01	1.0000	312.0	26.15%	12617.6	26.78%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.576e-01	1.0000	17.0	1.42%	745.4	1.58%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.574e-01	1.0000	15.0	1.26%	661.2	1.40%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.303e-01	1.0000	165.0	13.83%	6776.7	14.39%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.270e-01	1.0000	44.0	3.69%	1878.0	3.99%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.190e-01	1.0000	10.0	0.84%	460.7	0.98%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.148e-01	1.0000	34.0	2.85%	1472.1	3.12%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.135e-01	1.0000	44.0	3.69%	1886.1	4.00%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.999e-01	1.0000	43.0	3.60%	1853.6	3.93%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.964e-01	1.0000	141.0	11.82%	5845.3	12.41%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.953e-01	1.0000	192.0	16.09%	7899.4	16.77%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.904e-01	1.0000	299.0	25.06%	12188.3	25.87%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.902e-01	1.0000	113.0	9.47%	4720.0	10.02%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.887e-01	1.0000	418.0	35.04%	16927.4	35.93%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.882e-01	1.0000	28.0	2.35%	1236.2	2.62%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.857e-01	1.0000	241.0	20.20%	9877.0	20.97%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.603e-01	1.0000	342.0	28.67%	13948.4	29.61%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.545e-01	1.0000	117.0	9.81%	4919.0	10.44%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.521e-01	1.0000	537.0	45.01%	21704.1	46.07%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.460e-01	1.0000	115.0	9.64%	4846.6	10.29%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.442e-01	1.0000	182.0	15.26%	7561.6	16.05%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.440e-01	1.0000	49.0	4.11%	2140.4	4.54%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.386e-01	1.0000	47.0	3.94%	2061.5	4.38%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.238e-01	1.0000	113.0	9.47%	4790.5	10.17%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.205e-01	1.0000	17.0	1.42%	803.9	1.71%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.038e-01	1.0000	818.0	68.57%	32844.6	69.72%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.016e-01	1.0000	105.0	8.80%	4490.9	9.53%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.962e-01	1.0000	118.0	9.89%	5029.2	10.68%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.954e-01	1.0000	179.0	15.00%	7511.2	15.94%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.888e-01	1.0000	68.0	5.70%	2980.2	6.33%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.818e-01	1.0000	18.0	1.51%	870.0	1.85%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.711e-01	1.0000	1.0	0.08%	73.0	0.16%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.648e-01	1.0000	690.0	57.84%	27916.4	59.26%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.646e-01	1.0000	36.0	3.02%	1660.5	3.52%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.644e-01	1.0000	494.0	41.41%	20182.6	42.84%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.593e-01	1.0000	223.0	18.69%	9356.0	19.86%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.561e-01	1.0000	17.0	1.42%	842.0	1.79%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.517e-01	1.0000	106.0	8.89%	4601.8	9.77%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.380e-01	1.0000	79.0	6.62%	3503.3	7.44%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.371e-01	1.0000	144.0	12.07%	6188.1	13.14%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.361e-01	1.0000	9.0	0.75%	491.3	1.04%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.331e-01	1.0000	116.0	9.72%	5045.1	10.71%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.325e-01	1.0000	146.0	12.24%	6279.7	13.33%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.238e-01	1.0000	240.0	20.12%	10124.7	21.49%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.091e-01	1.0000	16.0	1.34%	835.6	1.77%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-9.191e-02	1.0000	20.0	1.68%	1035.9	2.20%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-8.553e-02	1.0000	125.0	10.48%	5522.2	11.72%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-8.242e-02	1.0000	166.0	13.91%	7224.5	15.34%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-8.098e-02	1.0000	3.0	0.25%	224.5	0.48%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-6.857e-02	1.0000	51.0	4.27%	2441.6	5.18%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.824e-02	1.0000	625.0	52.39%	25684.1	54.52%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.697e-02	1.0000	19.0	1.59%	1023.5	2.17%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.531e-02	1.0000	30.0	2.51%	1525.0	3.24%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.529e-02	1.0000	241.0	20.20%	10355.9	21.98%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.144e-02	1.0000	11.0	0.92%	653.7	1.39%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.450e-02	1.0000	51.0	4.27%	2476.4	5.26%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-4.986e-02	1.0000	89.0	7.46%	4124.7	8.76%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-4.775e-02	1.0000	89.0	7.46%	4132.2	8.77%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.640e-02	1.0000	267.0	22.38%	11574.3	24.57%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.589e-02	1.0000	99.0	8.30%	4610.9	9.79%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-3.474e-02	1.0000	188.0	15.76%	8343.0	17.71%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.282e-02	1.0000	535.0	44.84%	22364.2	47.47%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-3.055e-02	1.0000	334.0	28.00%	14342.3	30.44%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.996e-02	1.0000	154.0	12.91%	6963.4	14.78%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.901e-02	1.0000	83.0	6.96%	4032.6	8.56%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.766e-02	1.0000	16.0	1.34%	1004.4	2.13%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.645e-02	1.0000	167.0	14.00%	7633.0	16.20%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.631e-02	1.0000	164.0	13.75%	7508.5	15.94%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.594e-02	1.0000	9.0	0.75%	653.7	1.39%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.297e-02	1.0000	82.0	6.87%	4048.7	8.59%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.190e-02	1.0000	35.0	2.93%	1951.1	4.14%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-8.992e-03	1.0000	45.0	3.77%	2445.6	5.19%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.669e-03	1.0000	67.0	5.62%	3479.2	7.39%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.276e-03	1.0000	96.0	8.05%	4770.4	10.13%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-6.068e-03	1.0000	53.0	4.44%	2858.3	6.07%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.580e-03	1.0000	47.0	3.94%	2642.0	5.61%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.125e-03	1.0000	11.0	0.92%	873.2	1.85%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.943e-03	1.0000	62.0	5.20%	3405.5	7.23%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.333e-03	1.0000	272.0	22.80%	12504.7	26.54%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.300e-04	1.0000	11.0	0.92%	952.3	2.02%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-6.600e-04	1.0000	377.0	31.60%	16951.5	35.98%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	183.8	0.39%