Information for 20-TGGCCCGCTT (Motif 15)

A C G T C T A G A C T G A G T C A G T C A G T C A C T G A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A G T C A C T G A C T G A C T G A G T C A G T C C G T A
p-value:1e-13
log p-value:-3.131e+01
Information Content per bp:1.974
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.28%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets193.3 +/- 126.0bp
Average Position of motif in Background223.8 +/- 68.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TGGCCCGCTT
-GGCGCGCT-
 A C G T C T A G A C T G A G T C A G T C A G T C A C T G A G T C A C G T A C G T
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCCGCTT-
BTGACCTAVTTW
 A C G T A C G T C T A G A C T G A G T C A G T C A G T C A C T G A G T C A C G T A C G T A C G T
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TGGCCCGCTT-
NNHYTGACCTAGWTT
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G T C A C T G A G T C A C G T A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCCGCTT----
NTCGCGCGCCTTNNN
 A C G T A C G T C T A G A C T G A G T C A G T C A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

RORB/MA1150.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCCGCTT
NTGACCTAATT
 A C G T A C G T C T A G A C T G A G T C A G T C A G T C A C T G A G T C A C G T A C G T
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T

GCM2/MA0767.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGGCCCGCTT-
-TACCCGCATN
 A C G T C T A G A C T G A G T C A G T C A G T C A C T G A G T C A C G T A C G T A C G T
A C G T G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A

HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGGCCCGCTT
TWVGGTCCGC--
 A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G T C A C T G A G T C A C G T A C G T
A G C T C G A T T A C G A T C G A T C G C A G T A G T C A G T C A C T G T A G C A C G T A C G T

PLAGL2/MA1548.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGCCCGCTT
TGGGCCCCCT-
 A C G T A C G T C T A G A C T G A G T C A G T C A G T C A C T G A G T C A C G T A C G T
A C G T A C T G A C T G A T C G A T G C A G T C A G T C A G T C G A T C A C G T A C G T

RORC/MA1151.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGGCCCGCTT--
TGACCTANTTAN
 A C G T C T A G A C T G A G T C A G T C A G T C A C T G A G T C A C G T A C G T A C G T A C G T
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGCCCGCTT
TGACCTARTT
 A C G T C T A G A C T G A G T C A G T C A G T C A C T G A G T C A C G T A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T