Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 5000)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44714)	% of Background Sequences with Motif
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-555	-1.278e+03	0.0000	2164.0	43.28%	6215.3	13.90%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-549	-1.265e+03	0.0000	1828.0	36.56%	4470.4	10.00%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-433	-9.981e+02	0.0000	1071.0	21.42%	1822.0	4.08%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-369	-8.512e+02	0.0000	2244.0	44.88%	8606.4	19.25%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-361	-8.332e+02	0.0000	2560.0	51.20%	10909.5	24.40%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-321	-7.413e+02	0.0000	2533.0	50.66%	11299.1	25.28%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-318	-7.335e+02	0.0000	1921.0	38.42%	7140.0	15.97%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-302	-6.966e+02	0.0000	1408.0	28.16%	4280.2	9.57%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-279	-6.444e+02	0.0000	2699.0	53.98%	13256.2	29.65%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-269	-6.199e+02	0.0000	677.0	13.54%	1134.9	2.54%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-244	-5.620e+02	0.0000	715.0	14.30%	1407.8	3.15%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-242	-5.580e+02	0.0000	1944.0	38.88%	8340.6	18.66%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-214	-4.943e+02	0.0000	1437.0	28.74%	5438.2	12.16%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-213	-4.918e+02	0.0000	949.0	18.98%	2694.6	6.03%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-188	-4.332e+02	0.0000	1468.0	29.36%	6008.6	13.44%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-169	-3.902e+02	0.0000	965.0	19.30%	3226.9	7.22%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-139	-3.217e+02	0.0000	689.0	13.78%	2064.9	4.62%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-128	-2.956e+02	0.0000	597.0	11.94%	1708.2	3.82%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-109	-2.527e+02	0.0000	1639.0	32.78%	8679.6	19.42%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-98	-2.257e+02	0.0000	1029.0	20.58%	4660.8	10.43%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-88	-2.037e+02	0.0000	448.0	8.96%	1347.4	3.01%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-75	-1.732e+02	0.0000	1089.0	21.78%	5552.3	12.42%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-75	-1.732e+02	0.0000	860.0	17.20%	3992.2	8.93%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-69	-1.611e+02	0.0000	745.0	14.90%	3345.6	7.48%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-69	-1.599e+02	0.0000	974.0	19.48%	4888.5	10.94%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-66	-1.527e+02	0.0000	991.0	19.82%	5081.6	11.37%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-62	-1.448e+02	0.0000	1828.0	36.56%	11518.7	25.77%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-59	-1.372e+02	0.0000	565.0	11.30%	2397.2	5.36%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-52	-1.208e+02	0.0000	442.0	8.84%	1769.8	3.96%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-51	-1.190e+02	0.0000	229.0	4.58%	623.6	1.40%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-49	-1.141e+02	0.0000	665.0	13.30%	3245.8	7.26%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-44	-1.028e+02	0.0000	369.0	7.38%	1460.7	3.27%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-42	-9.887e+01	0.0000	176.0	3.52%	452.9	1.01%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-40	-9.253e+01	0.0000	1434.0	28.68%	9258.0	20.71%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-40	-9.217e+01	0.0000	816.0	16.32%	4551.6	10.18%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-38	-8.884e+01	0.0000	165.0	3.30%	438.4	0.98%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-37	-8.636e+01	0.0000	149.0	2.98%	374.4	0.84%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-37	-8.587e+01	0.0000	1061.0	21.22%	6466.5	14.46%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-37	-8.540e+01	0.0000	1047.0	20.94%	6367.8	14.24%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-28	-6.563e+01	0.0000	1205.0	24.10%	7959.3	17.80%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-28	-6.551e+01	0.0000	582.0	11.64%	3227.0	7.22%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-27	-6.312e+01	0.0000	1120.0	22.40%	7337.3	16.41%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-20	-4.625e+01	0.0000	2056.0	41.12%	15548.7	34.78%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-20	-4.610e+01	0.0000	408.0	8.16%	2254.6	5.04%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-19	-4.481e+01	0.0000	66.0	1.32%	148.8	0.33%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-19	-4.397e+01	0.0000	369.0	7.38%	2008.2	4.49%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-18	-4.253e+01	0.0000	402.0	8.04%	2261.5	5.06%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-15	-3.649e+01	0.0000	445.0	8.90%	2667.1	5.97%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-15	-3.467e+01	0.0000	357.0	7.14%	2054.4	4.60%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-13	-3.167e+01	0.0000	298.0	5.96%	1676.7	3.75%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-12	-2.866e+01	0.0000	445.0	8.90%	2810.8	6.29%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-12	-2.797e+01	0.0000	375.0	7.50%	2297.4	5.14%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-11	-2.730e+01	0.0000	191.0	3.82%	990.0	2.21%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-11	-2.717e+01	0.0000	987.0	19.74%	7158.6	16.01%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-10	-2.379e+01	0.0000	117.0	2.34%	539.3	1.21%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-9	-2.136e+01	0.0000	1146.0	22.92%	8684.5	19.43%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-9	-2.074e+01	0.0000	1031.0	20.62%	7745.6	17.33%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-8	-2.021e+01	0.0000	212.0	4.24%	1233.4	2.76%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-8	-1.985e+01	0.0000	182.0	3.64%	1024.1	2.29%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-7	-1.696e+01	0.0000	1157.0	23.14%	8961.8	20.05%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-7	-1.675e+01	0.0000	1731.0	34.62%	13902.1	31.10%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-7	-1.637e+01	0.0000	295.0	5.90%	1925.9	4.31%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-6	-1.609e+01	0.0000	445.0	8.90%	3107.7	6.95%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-6	-1.545e+01	0.0000	864.0	17.28%	6560.8	14.68%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-6	-1.512e+01	0.0000	116.0	2.32%	627.2	1.40%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-6	-1.455e+01	0.0000	208.0	4.16%	1303.0	2.91%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-6	-1.411e+01	0.0000	780.0	15.60%	5916.0	13.23%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-6	-1.401e+01	0.0000	1482.0	29.64%	11892.1	26.60%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-5	-1.361e+01	0.0000	122.0	2.44%	690.8	1.55%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-5	-1.307e+01	0.0000	556.0	11.12%	4103.4	9.18%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-5	-1.250e+01	0.0000	1549.0	30.98%	12560.5	28.10%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-5	-1.205e+01	0.0000	566.0	11.32%	4224.4	9.45%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-5	-1.160e+01	0.0000	267.0	5.34%	1824.8	4.08%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-5	-1.153e+01	0.0000	976.0	19.52%	7687.5	17.20%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-4	-1.090e+01	0.0001	128.0	2.56%	778.0	1.74%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-4	-1.057e+01	0.0001	376.0	7.52%	2725.5	6.10%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-4	-1.025e+01	0.0001	464.0	9.28%	3455.2	7.73%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-4	-1.015e+01	0.0001	379.0	7.58%	2764.9	6.18%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-4	-9.771e+00	0.0002	534.0	10.68%	4053.4	9.07%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-4	-9.693e+00	0.0002	1076.0	21.52%	8646.0	19.34%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-3	-8.758e+00	0.0005	170.0	3.40%	1140.5	2.55%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-3	-8.663e+00	0.0006	614.0	12.28%	4773.8	10.68%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-3	-8.627e+00	0.0006	66.0	1.32%	366.2	0.82%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-7.951e+00	0.0011	180.0	3.60%	1239.1	2.77%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-3	-7.838e+00	0.0012	814.0	16.28%	6514.6	14.57%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-3	-7.838e+00	0.0012	308.0	6.16%	2270.2	5.08%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-3	-7.738e+00	0.0013	1741.0	34.82%	14570.6	32.59%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-3	-7.006e+00	0.0027	495.0	9.90%	3857.1	8.63%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-6.825e+00	0.0032	66.0	1.32%	393.9	0.88%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-6.479e+00	0.0045	608.0	12.16%	4841.7	10.83%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-2	-6.410e+00	0.0048	63.0	1.26%	378.8	0.85%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-6.300e+00	0.0053	23.0	0.46%	103.2	0.23%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-5.915e+00	0.0077	566.0	11.32%	4518.8	10.11%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-5.677e+00	0.0096	434.0	8.68%	3414.6	7.64%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-5.306e+00	0.0138	419.0	8.38%	3308.9	7.40%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-4.881e+00	0.0209	137.0	2.74%	988.3	2.21%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-4.689e+00	0.0250	106.0	2.12%	746.1	1.67%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-4.619e+00	0.0266	242.0	4.84%	1859.1	4.16%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-4.434e+00	0.0316	137.0	2.74%	1003.8	2.25%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-4.212e+00	0.0391	904.0	18.08%	7559.6	16.91%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.794e+00	0.0588	738.0	14.76%	6155.0	13.77%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.491e+00	0.0789	249.0	4.98%	1975.2	4.42%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-3.236e+00	0.1008	1811.0	36.22%	15656.0	35.02%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.186e+00	0.1049	73.0	1.46%	527.0	1.18%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.084e+00	0.1151	181.0	3.62%	1424.3	3.19%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.042e+00	0.1189	1073.0	21.46%	9162.0	20.49%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-2.931e+00	0.1317	682.0	13.64%	5750.6	12.86%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.892e+00	0.1356	390.0	7.80%	3220.1	7.20%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-2.831e+00	0.1428	54.0	1.08%	385.9	0.86%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-2.519e+00	0.1933	3584.0	71.68%	31637.1	70.77%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.404e+00	0.2149	609.0	12.18%	5169.4	11.56%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.244e+00	0.2501	86.0	1.72%	668.7	1.50%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.225e+00	0.2524	566.0	11.32%	4813.4	10.77%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.224e+00	0.2524	340.0	6.80%	2844.2	6.36%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.084e+00	0.2857	47.0	0.94%	351.7	0.79%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.074e+00	0.2861	110.0	2.20%	878.9	1.97%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.031e+00	0.2962	307.0	6.14%	2575.0	5.76%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.953e+00	0.3174	240.0	4.80%	2001.3	4.48%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.944e+00	0.3174	135.0	2.70%	1098.8	2.46%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.862e+00	0.3420	1561.0	31.22%	13657.2	30.55%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.823e+00	0.3524	281.0	5.62%	2368.4	5.30%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.736e+00	0.3812	1619.0	32.38%	14197.0	31.76%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.680e+00	0.4000	46.0	0.92%	357.7	0.80%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.648e+00	0.4095	387.0	7.74%	3312.1	7.41%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.394e+00	0.5237	67.0	1.34%	548.2	1.23%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.321e+00	0.5592	113.0	2.26%	950.4	2.13%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.283e+00	0.5761	2259.0	45.18%	20007.7	44.76%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.241e+00	0.5961	223.0	4.46%	1919.2	4.29%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.240e+00	0.5961	303.0	6.06%	2623.9	5.87%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.231e+00	0.5961	481.0	9.62%	4196.1	9.39%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.180e+00	0.6194	74.0	1.48%	621.4	1.39%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.122e+00	0.6513	119.0	2.38%	1018.3	2.28%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.108e+00	0.6554	1157.0	23.14%	10224.5	22.87%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.095e+00	0.6591	416.0	8.32%	3642.0	8.15%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.067e+00	0.6728	13.0	0.26%	101.9	0.23%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.051e+00	0.6787	12.0	0.24%	93.9	0.21%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.027e+00	0.6904	8.0	0.16%	60.1	0.13%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.017e+00	0.6917	222.0	4.44%	1936.3	4.33%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.011e+00	0.6917	787.0	15.74%	6953.2	15.55%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-9.650e-01	0.7184	1148.0	22.96%	10180.7	22.77%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-9.359e-01	0.7344	778.0	15.56%	6890.0	15.41%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-8.929e-01	0.7613	6.0	0.12%	46.5	0.10%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.910e-01	0.7613	225.0	4.50%	1979.6	4.43%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.649e-01	0.7720	1181.0	23.62%	10502.9	23.49%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-8.243e-01	0.7985	289.0	5.78%	2558.1	5.72%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.009e-01	0.8117	192.0	3.84%	1698.7	3.80%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-7.705e-01	0.8311	682.0	13.64%	6074.5	13.59%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.530e-01	0.8401	368.0	7.36%	3275.2	7.33%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-7.489e-01	0.8401	68.0	1.36%	600.4	1.34%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-7.480e-01	0.8401	2093.0	41.86%	18689.0	41.81%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.315e-01	0.8413	1036.0	20.72%	9247.5	20.69%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.825e-01	0.8777	195.0	3.90%	1742.3	3.90%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-6.262e-01	0.9225	926.0	18.52%	8297.2	18.56%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.880e-01	0.9522	302.0	6.04%	2718.0	6.08%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.786e-01	0.9550	1702.0	34.04%	15259.6	34.13%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.694e-01	0.9576	137.0	2.74%	1239.4	2.77%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.691e-01	0.9576	161.0	3.22%	1456.0	3.26%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-5.549e-01	0.9593	365.0	7.30%	3291.4	7.36%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-5.502e-01	0.9593	90.0	1.80%	818.0	1.83%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.438e-01	0.9593	28.0	0.56%	257.7	0.58%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.430e-01	0.9593	136.0	2.72%	1234.9	2.76%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.208e-01	0.9681	844.0	16.88%	7599.4	17.00%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.160e-01	0.9681	488.0	9.76%	4406.4	9.86%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.150e-01	0.9681	355.0	7.10%	3211.4	7.18%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.142e-01	0.9681	152.0	3.04%	1383.6	3.09%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.110e-01	0.9681	237.0	4.74%	2150.5	4.81%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.050e-01	0.9681	1374.0	27.48%	12355.6	27.64%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.802e-01	0.9722	1054.0	21.08%	9498.3	21.25%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.768e-01	0.9722	222.0	4.44%	2022.9	4.52%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.699e-01	0.9722	461.0	9.22%	4177.2	9.34%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.543e-01	0.9802	177.0	3.54%	1620.1	3.62%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.310e-01	0.9975	105.0	2.10%	971.5	2.17%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.154e-01	1.0000	128.0	2.56%	1183.0	2.65%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-4.015e-01	1.0000	3245.0	64.90%	29141.0	65.19%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-3.932e-01	1.0000	659.0	13.18%	5987.0	13.39%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-3.879e-01	1.0000	800.0	16.00%	7257.6	16.23%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.815e-01	1.0000	102.0	2.04%	952.9	2.13%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.815e-01	1.0000	102.0	2.04%	952.9	2.13%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.758e-01	1.0000	287.0	5.74%	2636.0	5.90%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.730e-01	1.0000	1504.0	30.08%	13587.0	30.39%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.655e-01	1.0000	385.0	7.70%	3525.1	7.89%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.529e-01	1.0000	889.0	17.78%	8074.2	18.06%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.522e-01	1.0000	164.0	3.28%	1524.0	3.41%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.285e-01	1.0000	615.0	12.30%	5618.0	12.57%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.083e-01	1.0000	17.0	0.34%	173.1	0.39%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.070e-01	1.0000	51.0	1.02%	494.2	1.11%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.003e-01	1.0000	2221.0	44.42%	20056.2	44.86%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.803e-01	1.0000	641.0	12.82%	5876.0	13.14%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.675e-01	1.0000	80.0	1.60%	771.4	1.73%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.666e-01	1.0000	127.0	2.54%	1206.0	2.70%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.584e-01	1.0000	150.0	3.00%	1420.6	3.18%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.436e-01	1.0000	288.0	5.76%	2689.4	6.02%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.352e-01	1.0000	300.0	6.00%	2802.3	6.27%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.289e-01	1.0000	228.0	4.56%	2146.6	4.80%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.027e-01	1.0000	935.0	18.70%	8580.7	19.19%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.993e-01	1.0000	1466.0	29.32%	13367.3	29.90%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.950e-01	1.0000	353.0	7.06%	3305.1	7.39%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.899e-01	1.0000	1362.0	27.24%	12440.6	27.83%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.896e-01	1.0000	553.0	11.06%	5130.2	11.48%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.793e-01	1.0000	1413.0	28.26%	12909.1	28.88%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.452e-01	1.0000	975.0	19.50%	8992.4	20.12%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.295e-01	1.0000	75.0	1.50%	761.9	1.70%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.108e-01	1.0000	51.0	1.02%	537.4	1.20%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.001e-01	1.0000	1794.0	35.88%	16434.1	36.76%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.006e-02	1.0000	9.0	0.18%	119.5	0.27%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-7.975e-02	1.0000	12.0	0.24%	154.4	0.35%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-7.948e-02	1.0000	767.0	15.34%	7184.5	16.07%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.766e-02	1.0000	69.0	1.38%	726.7	1.63%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.034e-02	1.0000	179.0	3.58%	1788.8	4.00%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.856e-02	1.0000	449.0	8.98%	4303.2	9.63%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-5.822e-02	1.0000	2062.0	41.24%	18926.3	42.34%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.220e-02	1.0000	2731.0	54.62%	24927.3	55.76%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.196e-02	1.0000	1494.0	29.88%	13831.9	30.94%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.166e-02	1.0000	282.0	5.64%	2780.0	6.22%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-3.522e-02	1.0000	436.0	8.72%	4227.1	9.46%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-3.440e-02	1.0000	853.0	17.06%	8064.5	18.04%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.786e-02	1.0000	1277.0	25.54%	11949.0	26.73%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.593e-02	1.0000	39.0	0.78%	465.5	1.04%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.174e-02	1.0000	84.0	1.68%	924.9	2.07%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.000e-02	1.0000	86.0	1.72%	947.7	2.12%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.772e-02	1.0000	447.0	8.94%	4384.7	9.81%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.454e-02	1.0000	1484.0	29.68%	13901.3	31.10%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.218e-02	1.0000	36.0	0.72%	454.3	1.02%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.028e-02	1.0000	2585.0	51.70%	23839.5	53.33%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.774e-03	1.0000	1798.0	35.96%	16797.6	37.57%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-8.417e-03	1.0000	50.0	1.00%	611.6	1.37%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.983e-03	1.0000	28.0	0.56%	378.8	0.85%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-7.667e-03	1.0000	345.0	6.90%	3485.7	7.80%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-4.864e-03	1.0000	470.0	9.40%	4692.5	10.50%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-3.044e-03	1.0000	437.0	8.74%	4412.3	9.87%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.421e-03	1.0000	770.0	15.40%	7540.6	16.87%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.749e-03	1.0000	1271.0	25.42%	12176.4	27.24%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.578e-03	1.0000	60.0	1.20%	762.1	1.70%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.132e-03	1.0000	313.0	6.26%	3287.7	7.35%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-9.240e-04	1.0000	385.0	7.70%	3988.7	8.92%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-9.020e-04	1.0000	468.0	9.36%	4779.5	10.69%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-7.870e-04	1.0000	798.0	15.96%	7883.9	17.64%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.410e-04	1.0000	478.0	9.56%	4915.7	11.00%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.780e-04	1.0000	1300.0	26.00%	12593.1	28.17%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.920e-04	1.0000	3285.0	65.70%	30419.6	68.05%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.700e-04	1.0000	35.0	0.70%	537.4	1.20%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.370e-04	1.0000	197.0	3.94%	2243.0	5.02%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.160e-04	1.0000	652.0	13.04%	6639.9	14.85%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.100e-04	1.0000	760.0	15.20%	7658.7	17.13%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.600e-05	1.0000	518.0	10.36%	5417.8	12.12%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.800e-05	1.0000	41.0	0.82%	642.6	1.44%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.800e-05	1.0000	64.0	1.28%	913.8	2.04%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.300e-05	1.0000	1976.0	39.52%	18975.4	42.45%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.000e-06	1.0000	1152.0	23.04%	11489.4	25.70%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.000e-06	1.0000	783.0	15.66%	8149.6	18.23%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	673.0	13.46%	7141.1	15.97%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-0.000e+00	1.0000	459.0	9.18%	5197.5	11.63%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	2515.0	50.30%	24252.4	54.25%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	1145.0	22.90%	11882.8	26.58%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	627.0	12.54%	7051.9	15.77%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	346.0	6.92%	4259.2	9.53%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	3142.0	62.84%	30074.3	67.27%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-0.000e+00	1.0000	2156.0	43.12%	21436.2	47.95%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	576.0	11.52%	6715.7	15.02%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	57.0	1.14%	1150.9	2.57%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	1824.0	36.48%	18664.1	41.75%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-0.000e+00	1.0000	906.0	18.12%	10127.5	22.65%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	1010.0	20.20%	12126.5	27.13%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	20.1	0.05%