ChromHMM Report

Input Directory: histone_binarized/
Output Directory: histone_result/
Number of States: 6
Assembly: hg38
Full ChromHMM command: LearnModel -p 24 -r 1000 histone_binarized/ histone_result/ 6 hg38

Model Parameters


  • Emission Parameter SVG File
  • Emission Parameter Tab-Delimited Text File

  • Transition Parameter SVG File
  • Transition Parameter Tab-Delimited Text File

  • All Model Parameters Tab-Delimited Text File

    Genome Segmentation Files

  • d0_6 Segmentation File (Four Column Bed File)
  • d15_6 Segmentation File (Four Column Bed File)
  • d35_6 Segmentation File (Four Column Bed File)

    Custom Tracks for loading into the UCSC Genome Browser:
  • d0_6 Browser Custom Track Dense File
  • d0_6 Browser Custom Track Expanded File
  • d15_6 Browser Custom Track Dense File
  • d15_6 Browser Custom Track Expanded File
  • d35_6 Browser Custom Track Dense File
  • d35_6 Browser Custom Track Expanded File

    State Enrichments

    d0_6 Enrichments


  • d0_6 Overlap Enrichment SVG File
  • d0_6 Overlap Enrichment Tab-Delimited Text File

  • d0_6_RefSeqTES_neighborhood Enrichment SVG File
  • d0_6_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • d0_6_RefSeqTSS_neighborhood Enrichment SVG File
  • d0_6_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    d15_6 Enrichments


  • d15_6 Overlap Enrichment SVG File
  • d15_6 Overlap Enrichment Tab-Delimited Text File

  • d15_6_RefSeqTES_neighborhood Enrichment SVG File
  • d15_6_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • d15_6_RefSeqTSS_neighborhood Enrichment SVG File
  • d15_6_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File

    d35_6 Enrichments


  • d35_6 Overlap Enrichment SVG File
  • d35_6 Overlap Enrichment Tab-Delimited Text File

  • d35_6_RefSeqTES_neighborhood Enrichment SVG File
  • d35_6_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File

  • d35_6_RefSeqTSS_neighborhood Enrichment SVG File
  • d35_6_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File