PeakID (cmd=annotatePeaks.pl diff_RLAGL_Vector_c3.0_cond1.bed mm10)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
diff_RLAGL_Vector_cond1_3245	chr14	81193744	81194033	+	133.48024	NA	Intergenic	Intergenic	1193586	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
diff_RLAGL_Vector_cond1_7859	chr5	101374061	101374707	+	104.95674	NA	Intergenic	Lx8|LINE|L1	290327	NM_144955	18096	Mm.193072	NM_144955		Nkx6-1	NKX6A|Nkx6.1	NK6 homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_3087	chr14	35197378	35197767	+	97.74351	NA	intron (NM_008166, intron 4 of 15)	intron (NM_008166, intron 4 of 15)	302963	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA
diff_RLAGL_Vector_cond1_6413	chr3	81535395	81536110	+	97.33752	NA	Intergenic	Intergenic	-396864	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
diff_RLAGL_Vector_cond1_3305	chr14	102553815	102554108	+	92.97581	NA	Intergenic	Intergenic	428671	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
diff_RLAGL_Vector_cond1_2071	chr12	11153523	11153895	+	90.20155	NA	Intergenic	Intergenic	-2867	NM_001168564	238076	Mm.113278	NM_173417	ENSMUSG00000043673	Kcns3	-	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
diff_RLAGL_Vector_cond1_414	chr1	107837742	107838327	+	85.70929	NA	Intergenic	Intergenic	-79225	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
diff_RLAGL_Vector_cond1_6415	chr3	82357677	82358387	+	84.25414	NA	promoter-TSS (NM_001081230)	promoter-TSS (NM_001081230)	-40	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding
diff_RLAGL_Vector_cond1_6100	chr2	177497855	177498504	+	65.32063	NA	promoter-TSS (NR_036450)	promoter-TSS (NR_036450)	-47	NR_036450	433520	Mm.425117	NM_001024825		Gm14403	OTTMUSG00000016571	predicted gene 14403	ncRNA
diff_RLAGL_Vector_cond1_3539	chr15	41155184	41155773	+	63.29149	NA	Intergenic	Intergenic	-292004	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
diff_RLAGL_Vector_cond1_3649	chr15	65455158	65455583	+	62.82508	NA	Intergenic	Intergenic	-331671	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_3044	chr14	23132270	23132526	+	60.82554	NA	Intergenic	Intergenic	-37827	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA
diff_RLAGL_Vector_cond1_9065	chr7	74423969	74424331	+	58.83583	NA	intron (NM_001038643, intron 2 of 10)	intron (NM_001038643, intron 2 of 10)	130630	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding
diff_RLAGL_Vector_cond1_3306	chr14	102766937	102767144	+	56.97491	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	215592	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
diff_RLAGL_Vector_cond1_6069	chr2	172213577	172213931	+	56.59313	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-34738	NM_008561	17201	Mm.57183	NM_008561	ENSMUSG00000038537	Mc3r	MC3-R	melanocortin 3 receptor	protein-coding
diff_RLAGL_Vector_cond1_290	chr1	77695176	77695863	+	54.52402	NA	Intergenic	Intergenic	-180431	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding
diff_RLAGL_Vector_cond1_9936	chr9	15909445	15910038	+	54.28494	NA	TTS (NM_001080814)	TTS (NM_001080814)	-35185	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
diff_RLAGL_Vector_cond1_2088	chr12	13809286	13809738	+	53.93716	NA	Intergenic	Intergenic	342526	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding
diff_RLAGL_Vector_cond1_688	chr1	173693546	173693806	+	53.50226	NA	intron (NM_001162938, intron 5 of 6)	ERVB2_1-I_MM-int|LTR|ERVK	19996	NM_001162938	100033459	Mm.303377	NM_001162938	ENSMUSG00000066677	Pydc3	9830148g24rik|E430029J22Rik	pyrin domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_3652	chr15	65502663	65503156	+	52.85532	NA	Intergenic	Lx8b|LINE|L1	-284132	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_2070	chr12	11150196	11150538	+	51.65451	NA	promoter-TSS (NM_173417)	promoter-TSS (NM_173417)	6	NM_173417	238076	Mm.113278	NM_173417	ENSMUSG00000043673	Kcns3	-	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
diff_RLAGL_Vector_cond1_1560	chr11	25914082	25914529	+	50.94778	NA	intron (NR_027973, intron 2 of 5)	RLTR44B|LTR|ERVK	-287935	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
diff_RLAGL_Vector_cond1_8216	chr6	22802464	22802672	+	50.84836	NA	Intergenic	Intergenic	-72934	NM_001311064	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_5291	chr2	13740061	13740331	+	50.46115	NA	intron (NM_145838, intron 2 of 7)	intron (NM_145838, intron 2 of 7)	53324	NM_145838	241230	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding
diff_RLAGL_Vector_cond1_7869	chr5	102801539	102801761	+	50.34840	NA	intron (NM_001286468, intron 1 of 7)	intron (NM_001286468, intron 1 of 7)	32840	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
diff_RLAGL_Vector_cond1_69	chr1	18531678	18532066	+	49.39405	NA	Intergenic	RMER17B2|LTR|ERVK	-266734	NM_001040027	654464	Mm.99530	NM_001040027		Gm15386	BD-17|BD-41|Defb17|Defb41|OTTMUSG00000020946|OTTMUSG00000020948|mBD-41	predicted gene 15386	protein-coding
diff_RLAGL_Vector_cond1_978	chr10	32984882	32985483	+	47.90125	NA	Intergenic	Intergenic	-95267	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
diff_RLAGL_Vector_cond1_1292	chr10	103641186	103641530	+	46.75342	NA	Intergenic	Intergenic	273550	NM_175328	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding
diff_RLAGL_Vector_cond1_6065	chr2	172192729	172193084	+	46.48576	NA	Intergenic	RMER12|LTR|ERVK	-55586	NM_008561	17201	Mm.57183	NM_008561	ENSMUSG00000038537	Mc3r	MC3-R	melanocortin 3 receptor	protein-coding
diff_RLAGL_Vector_cond1_1247	chr10	90357163	90357869	+	44.02300	NA	intron (NM_001128086, intron 11 of 24)	intron (NM_001128086, intron 11 of 24)	-218211	NM_001177397	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_2441	chr12	109402189	109402656	+	43.20948	NA	Intergenic	Intergenic	-50401	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_708	chr1	176997721	176998367	+	42.32543	NA	intron (NM_029756, intron 16 of 17)	intron (NM_029756, intron 16 of 17)	-161911	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
diff_RLAGL_Vector_cond1_7858	chr5	101373022	101373234	+	41.97917	NA	Intergenic	Intergenic	291583	NM_144955	18096	Mm.193072	NM_144955		Nkx6-1	NKX6A|Nkx6.1	NK6 homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_8016	chr5	133572253	133572485	+	41.36987	NA	Intergenic	Intergenic	-527379	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_10613	chrX	165616097	165616431	+	41.00452	NA	Intergenic	Intergenic	-289283	NM_183427	237213	Mm.113877	NM_183427	ENSMUSG00000018589	Glra2	-	glycine receptor, alpha 2 subunit	protein-coding
diff_RLAGL_Vector_cond1_5617	chr2	88525500	88526547	+	40.99111	NA	exon (NM_146530, exon 1 of 1)	exon (NM_146530, exon 1 of 1)	522	NM_146530	258523	Mm.377551	NM_146530	ENSMUSG00000057735	Olfr1186	MOR230-5	olfactory receptor 1186	protein-coding
diff_RLAGL_Vector_cond1_3776	chr15	93710560	93711624	+	40.86907	NA	Intergenic	Intergenic	-115201	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3088	chr14	35209432	35209828	+	40.53949	NA	intron (NM_008166, intron 4 of 15)	MTD|LTR|ERVL-MaLR	315021	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA
diff_RLAGL_Vector_cond1_3357	chr14	118052148	118052645	+	39.43056	NA	promoter-TSS (NM_010024)	promoter-TSS (NM_010024)	-150	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding
diff_RLAGL_Vector_cond1_5029	chr18	87321841	87322364	+	39.29445	NA	Intergenic	Intergenic	610037	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding
diff_RLAGL_Vector_cond1_10513	chrX	107403123	107403529	+	39.11943	NA	promoter-TSS (NM_008409)	promoter-TSS (NM_008409)	34	NM_008409	16431	Mm.193	NM_008409	ENSMUSG00000031239	Itm2a	AW108051|Bricd2a|E25|Itm2	integral membrane protein 2A	protein-coding
diff_RLAGL_Vector_cond1_1471	chr11	7295177	7295490	+	38.60647	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-81410	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_10424	chrX	44789776	44790451	+	38.39598	NA	promoter-TSS (NM_001190718)	promoter-TSS (NM_001190718)	48	NM_001190718	245404	Mm.55685	NM_178739	ENSMUSG00000045284	Dcaf12l1	9330180J20|A230038L21Rik|Decaf12l1|Wdr40b	DDB1 and CUL4 associated factor 12-like 1	protein-coding
diff_RLAGL_Vector_cond1_3304	chr14	102552523	102552916	+	38.38964	NA	Intergenic	Intergenic	429913	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
diff_RLAGL_Vector_cond1_8603	chr6	121622387	121622998	+	38.05675	NA	Intergenic	Intergenic	-13481	NM_175628	232345	Mm.30151	NM_175628	ENSMUSG00000030111	A2m	A2mp	alpha-2-macroglobulin	protein-coding
diff_RLAGL_Vector_cond1_3653	chr15	65632530	65632742	+	37.78902	NA	Intergenic	Intergenic	-154405	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_686	chr1	173625497	173625994	+	37.09005	NA	Intergenic	RLTR13A3|LTR|ERVK	-5114	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Pyhin1	4930422C14|AI447904|Ifi209|Ifix	pyrin and HIN domain family, member 1	protein-coding
diff_RLAGL_Vector_cond1_3768	chr15	92762584	92763645	+	35.96992	NA	intron (NM_001164593, intron 9 of 9)	intron (NM_001164593, intron 9 of 9)	166005	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
diff_RLAGL_Vector_cond1_4143	chr16	81650317	81650540	+	35.71651	NA	Intergenic	MTD|LTR|ERVL-MaLR	449731	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_7012	chr4	62278127	62278402	+	34.84167	NA	Intergenic	Intergenic	-8165	NM_025286	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding
diff_RLAGL_Vector_cond1_554	chr1	146498805	146499172	+	34.27459	NA	intron (NM_001145807, intron 1 of 7)	intron (NM_001145807, intron 1 of 7)	1301	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_7065	chr4	75985144	75985385	+	34.12830	NA	intron (NM_011211, intron 31 of 39)	ORR1A3-int|LTR|ERVL-MaLR	-706978	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
diff_RLAGL_Vector_cond1_2185	chr12	36848247	36848476	+	33.73672	NA	Intergenic	Intergenic	32156	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA
diff_RLAGL_Vector_cond1_3454	chr15	9684846	9685422	+	33.68359	NA	intron (NM_177123, intron 10 of 17)	intron (NM_177123, intron 10 of 17)	63734	NM_001305044	320277	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding
diff_RLAGL_Vector_cond1_9193	chr7	112794116	112794332	+	33.67945	NA	intron (NM_001166584, intron 2 of 13)	intron (NM_001166584, intron 2 of 13)	34840	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding
diff_RLAGL_Vector_cond1_2455	chr12	112108734	112109013	+	33.65182	NA	promoter-TSS (NR_037234)	promoter-TSS (NR_037234)	-365	NR_037234	100526547		NR_037234	ENSMUSG00000093090	Mir3073a	Mir3073|mir-3073a|mmu-mir-3073|mmu-mir-3073a	microRNA 3073a	ncRNA
diff_RLAGL_Vector_cond1_977	chr10	32976907	32977178	+	33.05795	NA	Intergenic	MTE-int|LTR|ERVL-MaLR	-87127	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
diff_RLAGL_Vector_cond1_662	chr1	168967410	168967782	+	33.03295	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	476953	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA
diff_RLAGL_Vector_cond1_3675	chr15	70600795	70601184	+	33.03006	NA	Intergenic	Intergenic	676756	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA
diff_RLAGL_Vector_cond1_3248	chr14	81289335	81289763	+	32.91956	NA	Intergenic	Intergenic	1289247	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
diff_RLAGL_Vector_cond1_8732	chr6	141680513	141680873	+	32.74876	NA	intron (NM_020495, intron 13 of 15)	intron (NM_020495, intron 13 of 15)	51175	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding
diff_RLAGL_Vector_cond1_947	chr10	27891888	27892330	+	32.63243	NA	Intergenic	RMER10B|LTR|ERVL	-182711	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding
diff_RLAGL_Vector_cond1_8990	chr7	53748933	53749244	+	32.60616	NA	Intergenic	Intergenic	142801	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
diff_RLAGL_Vector_cond1_5571	chr2	78189659	78189889	+	32.59070	NA	intron (NR_108098, intron 6 of 6)	intron (NR_108098, intron 6 of 6)	-47773	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding
diff_RLAGL_Vector_cond1_4144	chr16	81673422	81673624	+	32.58687	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	472826	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_3247	chr14	81255507	81255788	+	32.17270	NA	Intergenic	Intergenic	1255345	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
diff_RLAGL_Vector_cond1_3268	chr14	87889890	87890226	+	32.10210	NA	Intergenic	Intergenic	473475	NM_172605	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4873	chr18	49500814	49501151	+	31.85484	NA	Intergenic	Intergenic	-22307	NR_033785	67321	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA
diff_RLAGL_Vector_cond1_6874	chr4	22949502	22949819	+	31.59357	NA	Intergenic	Intergenic	459112	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
diff_RLAGL_Vector_cond1_1484	chr11	8074351	8074644	+	31.56525	NA	Intergenic	Intergenic	590038	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding
diff_RLAGL_Vector_cond1_7684	chr5	44638710	44638982	+	30.99329	NA	intron (NM_001077398, intron 2 of 8)	intron (NM_001077398, intron 2 of 8)	160900	NM_010698	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding
diff_RLAGL_Vector_cond1_6755	chr3	155776982	155777360	+	30.77623	NA	Intergenic	Intergenic	-199183	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
diff_RLAGL_Vector_cond1_3669	chr15	67782498	67782927	+	30.63666	NA	Intergenic	L2c|LINE|L2	476144	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
diff_RLAGL_Vector_cond1_6963	chr4	48938348	48938795	+	30.51816	NA	Intergenic	MTD|LTR|ERVL-MaLR	-120891	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding
diff_RLAGL_Vector_cond1_4087	chr16	66145309	66145655	+	30.33101	NA	Intergenic	RLTR22_Mur|LTR|ERVK	329849	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_10541	chrX	131908346	131908578	+	29.85255	NA	Intergenic	Intergenic	1780531	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding
diff_RLAGL_Vector_cond1_6791	chr4	4076065	4076412	+	29.82909	NA	intron (NM_001080710, intron 2 of 6)	intron (NM_001080710, intron 2 of 6)	1276	NM_001080710	242286	Mm.298546	NM_001080710		Sdr16c6	4833413O15Rik|Gm423	short chain dehydrogenase/reductase family 16C, member 6	protein-coding
diff_RLAGL_Vector_cond1_5257	chr2	6367082	6367315	+	29.68492	NA	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	14462	NM_181399	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding
diff_RLAGL_Vector_cond1_3780	chr15	94431500	94431818	+	29.55110	NA	Intergenic	Intergenic	-27309	NM_177431	223838	Mm.214132	NM_177431	ENSMUSG00000022449	Adamts20	Adamst20|bt	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	protein-coding
diff_RLAGL_Vector_cond1_8414	chr6	79020209	79020621	+	29.47267	NA	Intergenic	MER45B|DNA|hAT-Tip100	-11627	NR_040301	100504701	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA
diff_RLAGL_Vector_cond1_1634	chr11	46827473	46827839	+	29.39808	NA	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	16857	NM_178759	276891	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_6044	chr2	169679320	169679602	+	29.38853	NA	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	45815	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
diff_RLAGL_Vector_cond1_2089	chr12	13972311	13972522	+	29.25254	NA	Intergenic	B3A|SINE|B2	179622	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding
diff_RLAGL_Vector_cond1_2067	chr12	10275399	10275611	+	29.20309	NA	Intergenic	Intergenic	-94466	NM_001310582	70881	Mm.272843	NM_027588	ENSMUSG00000020622	Nt5c1b	4921514H13Rik|AIRP|CN-IB|cN1B	5'-nucleotidase, cytosolic IB	protein-coding
diff_RLAGL_Vector_cond1_67	chr1	18522862	18523257	+	28.96117	NA	Intergenic	Lx9|LINE|L1	-257921	NM_001040027	654464	Mm.99530	NM_001040027		Gm15386	BD-17|BD-41|Defb17|Defb41|OTTMUSG00000020946|OTTMUSG00000020948|mBD-41	predicted gene 15386	protein-coding
diff_RLAGL_Vector_cond1_5644	chr2	101015384	101015670	+	28.87392	NA	Intergenic	Lx9|LINE|L1	-609221	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
diff_RLAGL_Vector_cond1_8233	chr6	26708954	26709530	+	28.73272	NA	Intergenic	Intergenic	777816	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA
diff_RLAGL_Vector_cond1_4105	chr16	72663398	72663870	+	28.69521	NA	5' UTR (NM_019413, exon 1 of 29)	5' UTR (NM_019413, exon 1 of 29)	485	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9158	chr7	103089643	103090063	+	28.64384	NA	Intergenic	RLTR22_Mur|LTR|ERVK	4333	NM_147054	259056	Mm.377813	NM_147054	ENSMUSG00000073959	Olfr584	MOR30-2	olfactory receptor 584	protein-coding
diff_RLAGL_Vector_cond1_413	chr1	107773023	107773365	+	28.60637	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-144065	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
diff_RLAGL_Vector_cond1_5475	chr2	54936277	54936947	+	28.43197	NA	intron (NM_173030, intron 9 of 12)	intron (NM_173030, intron 9 of 12)	-499358	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
diff_RLAGL_Vector_cond1_187	chr1	54250503	54250887	+	28.34105	NA	promoter-TSS (NM_030025)	promoter-TSS (NM_030025)	12	NM_030025	78016	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding
diff_RLAGL_Vector_cond1_194	chr1	55852455	55852747	+	28.27277	NA	Intergenic	RMER20A|LTR|ERVK	-78640	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
diff_RLAGL_Vector_cond1_3989	chr16	44833331	44833550	+	28.25947	NA	exon (NM_207244, exon 4 of 6)	exon (NM_207244, exon 4 of 6)	12712	NM_207244	239849	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding
diff_RLAGL_Vector_cond1_10479	chrX	89628326	89628817	+	27.95225	NA	Intergenic	L1_Mus3|LINE|L1	-123697	NM_001085511	245509	Mm.297700	NM_001085511	ENSMUSG00000079513	4932429P05Rik	-	RIKEN cDNA 4932429P05 gene	protein-coding
diff_RLAGL_Vector_cond1_3650	chr15	65490858	65491258	+	27.91159	NA	Intergenic	RMER17A|LTR|ERVK	-295983	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_6029	chr2	167706213	167706509	+	27.79488	NA	Intergenic	Intergenic	15184	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA
diff_RLAGL_Vector_cond1_2442	chr12	109417853	109418139	+	27.77302	NA	Intergenic	Intergenic	-34827	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6242	chr3	34485956	34486201	+	27.74826	NA	Intergenic	Intergenic	-74303	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA
diff_RLAGL_Vector_cond1_4089	chr16	67948994	67949467	+	27.69958	NA	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-328322	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_1483	chr11	8067332	8067712	+	27.67793	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	597013	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding
diff_RLAGL_Vector_cond1_3642	chr15	64348631	64348936	+	27.65478	NA	intron (NM_001276467, intron 2 of 29)	intron (NM_001276467, intron 2 of 29)	34136	NM_001276467	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding
diff_RLAGL_Vector_cond1_1264	chr10	95681020	95681394	+	27.63185	NA	Intergenic	RLTR12D|LTR|ERVK	-117040	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding
diff_RLAGL_Vector_cond1_6386	chr3	71274117	71275118	+	27.55375	NA	Intergenic	RMER15|LTR|ERVL	-467326	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
diff_RLAGL_Vector_cond1_9064	chr7	74417020	74417415	+	27.53847	NA	intron (NM_001038643, intron 2 of 10)	intron (NM_001038643, intron 2 of 10)	137563	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding
diff_RLAGL_Vector_cond1_4557	chr17	66905717	66906042	+	27.47813	NA	intron (NM_008984, intron 13 of 30)	ORR1F|LTR|ERVL-MaLR	120356	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA
diff_RLAGL_Vector_cond1_5432	chr2	46371023	46371366	+	27.47524	NA	Intergenic	Intergenic	674589	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
diff_RLAGL_Vector_cond1_4824	chr18	37264828	37265258	+	27.42263	NA	promoter-TSS (NM_053126)	promoter-TSS (NM_053126)	45	NM_053126	93872	Mm.196703	NM_053126	ENSMUSG00000051663	Pcdhb1	PcdhbA	protocadherin beta 1	protein-coding
diff_RLAGL_Vector_cond1_9940	chr9	16302314	16302837	+	27.27130	NA	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	75656	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT tumor suppressor homolog 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3353	chr14	117139425	117139718	+	27.14676	NA	intron (NM_011821, intron 1 of 8)	intron (NM_011821, intron 1 of 8)	214274	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
diff_RLAGL_Vector_cond1_10614	chrX	166302902	166303153	+	27.01788	NA	intron (NM_001177961, intron 1 of 6)	intron (NM_001177961, intron 1 of 6)	-41526	NM_001177960	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding
diff_RLAGL_Vector_cond1_9268	chr7	132674094	132674372	+	26.99186	NA	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	63590	NM_029609	76429	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
diff_RLAGL_Vector_cond1_7951	chr5	116366977	116367387	+	26.95830	NA	Intergenic	Intergenic	54822	NR_110475	77846	Mm.404871	NR_110475	ENSMUSG00000086715	B230112J18Rik	-	RIKEN cDNA B230112J18 gene	ncRNA
diff_RLAGL_Vector_cond1_1001	chr10	39216618	39216858	+	26.54387	NA	Intergenic	Intergenic	-52944	NM_001127376	327743	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|ENSMUSG00000062074|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding
diff_RLAGL_Vector_cond1_7716	chr5	50654123	50654486	+	26.31429	NA	Intergenic	Intergenic	401542	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
diff_RLAGL_Vector_cond1_6789	chr4	4019465	4020021	+	26.26498	NA	promoter-TSS (NM_181989)	promoter-TSS (NM_181989)	-80	NM_181989	242285	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding
diff_RLAGL_Vector_cond1_2258	chr12	57685132	57685496	+	26.13570	NA	intron (NM_001312644, intron 15 of 31)	RMER13B|LTR|ERVK	-22403	NR_131112	217601	Mm.488987	NR_131112		BC042761	-	cDNA sequence BC042761	ncRNA
diff_RLAGL_Vector_cond1_2602	chr13	26154942	26155459	+	25.98945	NA	Intergenic	Intergenic	157206	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA
diff_RLAGL_Vector_cond1_417	chr1	108592694	108593342	+	25.94196	NA	Intergenic	RLTR22_Mur|LTR|ERVK	675759	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
diff_RLAGL_Vector_cond1_9766	chr8	108990559	108991075	+	25.90817	NA	Intergenic	Intergenic	53957	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA
diff_RLAGL_Vector_cond1_2553	chr13	12889027	12889361	+	25.85545	NA	Intergenic	MTD|LTR|ERVL-MaLR	-89115	NM_011118	18812	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding
diff_RLAGL_Vector_cond1_5457	chr2	50100386	50100766	+	25.73314	NA	intron (NM_177139, intron 1 of 4)	intron (NM_177139, intron 1 of 4)	34147	NR_033304	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_416	chr1	107941646	107942370	+	25.69405	NA	intron (NR_102307, intron 4 of 4)	intron (NR_102307, intron 4 of 4)	24749	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
diff_RLAGL_Vector_cond1_10532	chrX	121661921	121662414	+	25.63832	NA	Intergenic	Intergenic	735218	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding
diff_RLAGL_Vector_cond1_3252	chr14	82238452	82238737	+	25.46367	NA	Intergenic	LTRIS2|LTR|ERV1	-2204969	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
diff_RLAGL_Vector_cond1_7071	chr4	77310360	77310807	+	25.43856	NA	intron (NM_011211, intron 6 of 39)	RLTR9D|LTR|ERVK	901312	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
diff_RLAGL_Vector_cond1_2041	chr12	5119755	5120131	+	25.29440	NA	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	202590	NM_001099628	320817	Mm.210966	NM_001099628		Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding
diff_RLAGL_Vector_cond1_2128	chr12	25189330	25189639	+	25.28907	NA	Intergenic	Intergenic	60310	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA
diff_RLAGL_Vector_cond1_6240	chr3	34330802	34331274	+	25.23137	NA	Intergenic	Intergenic	-229343	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA
diff_RLAGL_Vector_cond1_9913	chr9	13069520	13069821	+	25.21589	NA	Intergenic	IAPLTR1_Mm|LTR|ERVK	36185	NR_040755	78219	Mm.414868	NR_040755		4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA
diff_RLAGL_Vector_cond1_4693	chr17	91186587	91187278	+	25.21508	NA	Intergenic	B4A|SINE|B4	-94130	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
diff_RLAGL_Vector_cond1_4032	chr16	53840710	53841006	+	25.17084	NA	Intergenic	Intergenic	-1025114	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA
diff_RLAGL_Vector_cond1_4608	chr17	76877599	76877854	+	25.13191	NA	Intergenic	Intergenic	1016703	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
diff_RLAGL_Vector_cond1_4104	chr16	72663053	72663268	+	24.94675	NA	promoter-TSS (NM_019413)	promoter-TSS (NM_019413)	11	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6701	chr3	147444186	147444694	+	24.88855	NA	Intergenic	Intergenic	592073	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding
diff_RLAGL_Vector_cond1_3355	chr14	117157470	117157747	+	24.88225	NA	intron (NM_011821, intron 1 of 8)	intron (NM_011821, intron 1 of 8)	232311	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
diff_RLAGL_Vector_cond1_171	chr1	47479083	47479493	+	24.88089	NA	Intergenic	RLTR30D2_MM|LTR|ERV1	-12163	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
diff_RLAGL_Vector_cond1_9083	chr7	78990328	78990543	+	24.83600	NA	Intergenic	CpG	62888	NR_132432	102633600	Mm.382916	NR_132432		Gm26633	-	predicted gene, 26633	ncRNA
diff_RLAGL_Vector_cond1_6302	chr3	54421076	54421342	+	24.83186	NA	Intergenic	Intergenic	60102	NM_015784	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding
diff_RLAGL_Vector_cond1_1133	chr10	76961755	76962339	+	24.75672	NA	promoter-TSS (NM_021568)	promoter-TSS (NM_021568)	-100	NM_021568	59093	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_3467	chr15	11757864	11758477	+	24.75485	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	147504	NM_008728	18162	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding
diff_RLAGL_Vector_cond1_1002	chr10	39369491	39369879	+	24.70771	NA	promoter-TSS (NM_001122892)	promoter-TSS (NM_001122892)	-114	NM_001122893	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_6873	chr4	22948942	22949258	+	24.58950	NA	Intergenic	Intergenic	458552	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
diff_RLAGL_Vector_cond1_1626	chr11	43929117	43929620	+	24.56651	NA	Intergenic	Intergenic	-28131	NM_001284381	11548	Mm.39086	NM_007416	ENSMUSG00000050541	Adra1b	[a]1b	adrenergic receptor, alpha 1b	protein-coding
diff_RLAGL_Vector_cond1_1121	chr10	72320355	72320652	+	24.44905	NA	Intergenic	Charlie10|DNA|hAT-Charlie	-334343	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding
diff_RLAGL_Vector_cond1_2225	chr12	50573985	50574302	+	24.43778	NA	intron (NM_008858, intron 1 of 18)	intron (NM_008858, intron 1 of 18)	75080	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
diff_RLAGL_Vector_cond1_4034	chr16	54346065	54346410	+	24.33827	NA	Intergenic	Intergenic	937000	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3578	chr15	51679267	51679763	+	24.24344	NA	Intergenic	Intergenic	185946	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
diff_RLAGL_Vector_cond1_3276	chr14	98824638	98825016	+	24.24213	NA	Intergenic	L1MA6|LINE|L1	221309	NM_175245	76789	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding
diff_RLAGL_Vector_cond1_631	chr1	163779331	163779727	+	24.03540	NA	promoter-TSS (NM_010629)	promoter-TSS (NM_010629)	-54	NM_001305643	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding
diff_RLAGL_Vector_cond1_6723	chr3	150637606	150637884	+	24.02913	NA	Intergenic	Intergenic	-800137	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
diff_RLAGL_Vector_cond1_1293	chr10	105120227	105120761	+	23.86442	NA	Intergenic	Intergenic	453985	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
diff_RLAGL_Vector_cond1_8407	chr6	78203118	78203530	+	23.85999	NA	Intergenic	MMERVK10D3_LTR|LTR|ERVK	-167561	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding
diff_RLAGL_Vector_cond1_2719	chr13	60736365	60736685	+	23.82305	NA	intron (NM_029653, intron 18 of 25)	intron (NM_029653, intron 18 of 25)	49839	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding
diff_RLAGL_Vector_cond1_4964	chr18	73963352	73963671	+	23.79731	NA	intron (NM_172632, intron 2 of 5)	intron (NM_172632, intron 2 of 5)	-54396	NR_045390	77855	Mm.410760	NR_045390	ENSMUSG00000090263	D730045A05Rik	-	RIKEN cDNA D730045A05 gene	ncRNA
diff_RLAGL_Vector_cond1_7078	chr4	81953115	81953348	+	23.77959	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-112149	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA
diff_RLAGL_Vector_cond1_6528	chr3	108396090	108396423	+	23.67570	NA	intron (NM_001004177, intron 23 of 33)	intron (NM_001004177, intron 23 of 33)	12418	NM_019976	56742	Mm.389499	NM_019976	ENSMUSG00000068744	Psrc1	5430413I02Rik|AL033312|Dda3	proline/serine-rich coiled-coil 1	protein-coding
diff_RLAGL_Vector_cond1_6066	chr2	172197857	172198096	+	23.58323	NA	Intergenic	Intergenic	-50516	NM_008561	17201	Mm.57183	NM_008561	ENSMUSG00000038537	Mc3r	MC3-R	melanocortin 3 receptor	protein-coding
diff_RLAGL_Vector_cond1_2183	chr12	36820408	36820956	+	23.49868	NA	Intergenic	Intergenic	4477	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA
diff_RLAGL_Vector_cond1_6058	chr2	171633506	171634094	+	23.47084	NA	Intergenic	Intergenic	328999	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA
diff_RLAGL_Vector_cond1_3154	chr14	58635748	58636090	+	23.10847	NA	Intergenic	Intergenic	506974	NM_026461	67932	Mm.65550	NM_026461	ENSMUSG00000021977	1700129C05Rik	-	RIKEN cDNA 1700129C05 gene	protein-coding
diff_RLAGL_Vector_cond1_7195	chr4	108910022	108910228	+	23.10076	NA	intron (NM_023537, intron 2 of 4)	intron (NM_023537, intron 2 of 4)	31055	NM_023537	69908	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_7875	chr5	103261479	103261777	+	23.09256	NA	intron (NR_040699, intron 4 of 6)	B4A|SINE|B4	37401	NR_040699	74624	Mm.389662	NR_040699	ENSMUSG00000104956	4930429D17Rik	-	RIKEN cDNA 4930429D17 gene	ncRNA
diff_RLAGL_Vector_cond1_6540	chr3	110458910	110459275	+	23.05523	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-208093	NM_178891	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding
diff_RLAGL_Vector_cond1_2189	chr12	37760979	37761528	+	23.01809	NA	Intergenic	Intergenic	-119452	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding
diff_RLAGL_Vector_cond1_5915	chr2	148732298	148732641	+	23.01803	NA	promoter-TSS (NM_019632)	promoter-TSS (NM_019632)	-49	NM_019632	17957	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding
diff_RLAGL_Vector_cond1_6756	chr3	155868345	155868600	+	22.99053	NA	Intergenic	Intergenic	-107882	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
diff_RLAGL_Vector_cond1_6387	chr3	71296609	71296936	+	22.94910	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-489481	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
diff_RLAGL_Vector_cond1_193	chr1	55770010	55770676	+	22.87552	NA	Intergenic	Intergenic	-160898	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
diff_RLAGL_Vector_cond1_3777	chr15	93751000	93751254	+	22.83555	NA	Intergenic	Intergenic	-155236	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9938	chr9	16037428	16037774	+	22.80599	NA	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-163045	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
diff_RLAGL_Vector_cond1_9763	chr8	108573265	108573655	+	22.77721	NA	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	11217	NR_077224	109215	Mm.65282	NR_077224		Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA
diff_RLAGL_Vector_cond1_10534	chrX	122396987	122397655	+	22.69838	NA	promoter-TSS (NM_138742)	promoter-TSS (NM_138742)	64	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding
diff_RLAGL_Vector_cond1_5586	chr2	83251168	83251723	+	22.67782	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-393133	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
diff_RLAGL_Vector_cond1_2804	chr13	72347015	72347587	+	22.64784	NA	Intergenic	Intergenic	281263	NR_030701	328287	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA
diff_RLAGL_Vector_cond1_9641	chr8	77964173	77964385	+	22.59418	NA	Intergenic	RLTR40|LTR|ERVK	-239827	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding
diff_RLAGL_Vector_cond1_6119	chr2	179516580	179516861	+	22.53975	NA	intron (NM_009867, intron 2 of 15)	intron (NM_009867, intron 2 of 15)	74289	NM_001316723	12561	Mm.184711	NM_009867	ENSMUSG00000000305	Cdh4	AW120700|R-CAD|R-Cadh|Rcad	cadherin 4	protein-coding
diff_RLAGL_Vector_cond1_5031	chr18	87366956	87367306	+	22.49287	NA	Intergenic	RMER6D|LTR|ERVK	655066	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding
diff_RLAGL_Vector_cond1_2718	chr13	60662574	60662848	+	22.46299	NA	intron (NM_029653, intron 2 of 25)	intron (NM_029653, intron 2 of 25)	60500	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding
diff_RLAGL_Vector_cond1_7646	chr5	37469595	37469874	+	22.37400	NA	intron (NM_022416, intron 6 of 11)	MLT1C|LTR|ERVL-MaLR	131256	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding
diff_RLAGL_Vector_cond1_8848	chr7	18378370	18378657	+	22.28477	NA	Intergenic	RLTR9D|LTR|ERVK	-23506	NM_011963	26438	Mm.89991	NM_011963	ENSMUSG00000003505	Psg18	Cea-3|Cea3|mmCGM6	pregnancy specific glycoprotein 18	protein-coding
diff_RLAGL_Vector_cond1_6234	chr3	31260607	31261030	+	22.18477	NA	intron (NM_172861, intron 1 of 7)	intron (NM_172861, intron 1 of 7)	49501	NM_172861	241919	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding
diff_RLAGL_Vector_cond1_108	chr1	26891559	26891841	+	22.07365	NA	Intergenic	RLTR9D|LTR|ERVK	-204240	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding
diff_RLAGL_Vector_cond1_3638	chr15	63736641	63736875	+	22.02963	NA	Intergenic	Intergenic	71981	NM_031378	83492	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding
diff_RLAGL_Vector_cond1_2136	chr12	26567463	26567846	+	22.02036	NA	Intergenic	Intergenic	98439	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_2047	chr12	7548812	7549077	+	22.00192	NA	Intergenic	Intergenic	-168614	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
diff_RLAGL_Vector_cond1_1448	chr10	129352498	129352933	+	21.97734	NA	Intergenic	RLTR22_Mur|LTR|ERVK	2150	NM_001011797	257985	Mm.422962	NM_001011797	ENSMUSG00000095075	Olfr782	MOR110-8	olfactory receptor 782	protein-coding
diff_RLAGL_Vector_cond1_1473	chr11	7423645	7424447	+	21.96980	NA	Intergenic	Intergenic	-210123	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_4654	chr17	85687979	85688203	+	21.95432	NA	5' UTR (NM_011380, exon 1 of 2)	5' UTR (NM_011380, exon 1 of 2)	163	NM_011380	20472	Mm.5039	NM_011380	ENSMUSG00000024134	Six2	-	sine oculis-related homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_3518	chr15	32920457	32921109	+	21.83315	NA	promoter-TSS (NM_008304)	promoter-TSS (NM_008304)	60	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding
diff_RLAGL_Vector_cond1_1045	chr10	52911799	52912088	+	21.68202	NA	intron (NM_178675, intron 1 of 7)	MTD|LTR|ERVL-MaLR	221442	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
diff_RLAGL_Vector_cond1_4319	chr17	23192956	23193394	+	21.65087	NA	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	53	NM_009555	22700	Mm.486936	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding
diff_RLAGL_Vector_cond1_2910	chr13	107295433	107295698	+	21.61731	NA	Intergenic	Intergenic	-174257	NR_045084	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA
diff_RLAGL_Vector_cond1_3354	chr14	117141201	117141783	+	21.57256	NA	intron (NM_011821, intron 1 of 8)	intron (NM_011821, intron 1 of 8)	216195	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding
diff_RLAGL_Vector_cond1_8232	chr6	26708167	26708808	+	21.53751	NA	Intergenic	Intergenic	777061	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA
diff_RLAGL_Vector_cond1_10436	chrX	53146522	53146814	+	21.45921	NA	Intergenic	Intergenic	-32263	NM_019538	56096	Mm.274842	NM_019538	ENSMUSG00000061082	Plac1	DXWsu72e|Epcs26|Oosp2l	placental specific protein 1	protein-coding
diff_RLAGL_Vector_cond1_6053	chr2	170343585	170344074	+	21.42393	NA	Intergenic	Intergenic	-12532	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA
diff_RLAGL_Vector_cond1_10158	chr9	74365879	74366393	+	21.42246	NA	Intergenic	Intergenic	255802	NM_001033500	546144	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding
diff_RLAGL_Vector_cond1_9134	chr7	95387631	95388048	+	21.40346	NA	Intergenic	Intergenic	-783405	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
diff_RLAGL_Vector_cond1_3341	chr14	106714062	106714408	+	21.34085	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-227715	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
diff_RLAGL_Vector_cond1_7868	chr5	102614050	102614361	+	21.32006	NA	intron (NM_029270, intron 2 of 9)	RSINE1|SINE|B4	132814	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
diff_RLAGL_Vector_cond1_6563	chr3	120861548	120862394	+	21.25989	NA	intron (NR_130170, intron 1 of 18)	intron (NR_130170, intron 1 of 18)	24761	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
diff_RLAGL_Vector_cond1_5349	chr2	24719622	24720121	+	21.25280	NA	intron (NM_007579, intron 8 of 45)	intron (NM_007579, intron 8 of 45)	43281	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding
diff_RLAGL_Vector_cond1_2182	chr12	36790754	36791126	+	21.24219	NA	Intergenic	Intergenic	-25265	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA
diff_RLAGL_Vector_cond1_3251	chr14	82092796	82093193	+	21.22038	NA	Intergenic	Intergenic	2092692	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
diff_RLAGL_Vector_cond1_298	chr1	79984808	79985030	+	21.14026	NA	Intergenic	B4A|SINE|B4	-126254	NM_009255	20720	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding
diff_RLAGL_Vector_cond1_1005	chr10	39376007	39376292	+	21.01297	NA	intron (NM_008054, intron 1 of 13)	intron (NM_008054, intron 1 of 13)	6350	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_8605	chr6	122308489	122309099	+	20.99819	NA	promoter-TSS (NM_010749)	promoter-TSS (NM_010749)	-216	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding
diff_RLAGL_Vector_cond1_4727	chr18	7254497	7254797	+	20.99626	NA	intron (NM_001081393, intron 11 of 20)	B4A|SINE|B4	43254	NM_001081393	74934	Mm.107918	NM_001081393	ENSMUSG00000061802	Armc4	4930463I21Rik|b2b227.1Clo|b2b643Clo	armadillo repeat containing 4	protein-coding
diff_RLAGL_Vector_cond1_2147	chr12	29290678	29291397	+	20.98854	NA	Intergenic	Intergenic	-237347	NM_001093778	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding
diff_RLAGL_Vector_cond1_2471	chr12	116033782	116034071	+	20.98354	NA	Intergenic	Intergenic	-13798	NM_019565	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding
diff_RLAGL_Vector_cond1_7717	chr5	50671229	50671508	+	20.85500	NA	Intergenic	Intergenic	418606	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
diff_RLAGL_Vector_cond1_2567	chr13	16291680	16292212	+	20.84428	NA	Intergenic	Intergenic	277471	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
diff_RLAGL_Vector_cond1_1474	chr11	7465612	7465892	+	20.80251	NA	Intergenic	Intergenic	-251829	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_239	chr1	68674649	68674966	+	20.70713	NA	intron (NM_010154, intron 2 of 26)	MLT1E1A|LTR|ERVL-MaLR	433252	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
diff_RLAGL_Vector_cond1_2911	chr13	107306858	107307312	+	20.69877	NA	Intergenic	Intergenic	-162737	NR_045084	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA
diff_RLAGL_Vector_cond1_10096	chr9	57552847	57553153	+	20.66380	NA	promoter-TSS (NM_025837)	promoter-TSS (NM_025837)	-248	NM_025837	110119	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding
diff_RLAGL_Vector_cond1_5501	chr2	60963055	60963386	+	20.63320	NA	promoter-TSS (NM_020296)	promoter-TSS (NM_020296)	-16	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_2440	chr12	109390263	109391318	+	20.61801	NA	Intergenic	Intergenic	-62033	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_223	chr1	65372746	65373093	+	20.60053	NA	intron (NM_139270, intron 10 of 12)	intron (NM_139270, intron 10 of 12)	61662	NM_139270	213527	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding
diff_RLAGL_Vector_cond1_3288	chr14	100328636	100329209	+	20.58218	NA	Intergenic	RMER20A|LTR|ERVK	-179126	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
diff_RLAGL_Vector_cond1_8229	chr6	24894620	24894884	+	20.55746	NA	Intergenic	Intergenic	36755	NM_028957	74468	Mm.251601	NM_028957	ENSMUSG00000029678	Hyal5	4933439A12Rik	hyaluronoglucosaminidase 5	protein-coding
diff_RLAGL_Vector_cond1_1494	chr11	9727742	9728499	+	20.55027	NA	Intergenic	MERV1_I-int|LTR|ERV1	536178	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
diff_RLAGL_Vector_cond1_6109	chr2	178342666	178342997	+	20.54933	NA	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	64827	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding
diff_RLAGL_Vector_cond1_8505	chr6	97704385	97704702	+	20.53392	NA	Intergenic	Intergenic	-86886	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013	FERM domain containing 4B	protein-coding
diff_RLAGL_Vector_cond1_4401	chr17	35649387	35649664	+	20.52479	NA	promoter-TSS (NM_001163194)	promoter-TSS (NM_001163194)	-183	NM_001163194	433102	Mm.136760	NM_001163194	ENSMUSG00000090509	Sfta2	EG433102	surfactant associated 2	protein-coding
diff_RLAGL_Vector_cond1_400	chr1	105962219	105962429	+	20.51950	NA	Intergenic	Intergenic	-28082	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_6872	chr4	22938369	22938607	+	20.49970	NA	Intergenic	Intergenic	447940	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
diff_RLAGL_Vector_cond1_8417	chr6	79057552	79057912	+	20.46540	NA	Intergenic	Intergenic	25690	NR_040302	100504701	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA
diff_RLAGL_Vector_cond1_4524	chr17	61960082	61960459	+	20.44184	NA	Intergenic	Intergenic	921047	NM_207654	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
diff_RLAGL_Vector_cond1_5638	chr2	93257695	93258195	+	20.42643	NA	intron (NM_183180, intron 2 of 9)	intron (NM_183180, intron 2 of 9)	70361	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding
diff_RLAGL_Vector_cond1_2261	chr12	58198758	58199097	+	20.41942	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-12877	NM_009216	20605	Mm.278336	NM_009216		Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding
diff_RLAGL_Vector_cond1_6794	chr4	4510531	4510860	+	20.39732	NA	Intergenic	Intergenic	18763	NM_001277919	622019	Mm.246123	NM_001277919		Gm11780	OTTMUSG00000004194	predicted gene 11780	protein-coding
diff_RLAGL_Vector_cond1_7227	chr4	114646887	114647589	+	20.38796	NA	Intergenic	Intergenic	-174482	NR_033617	433746	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	OTTMUSG00000008584	predicted gene 12830	ncRNA
diff_RLAGL_Vector_cond1_410	chr1	107696610	107697194	+	20.38753	NA	Intergenic	MER77|LTR|ERVL	106896	NM_001159748	20725	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding
diff_RLAGL_Vector_cond1_6705	chr3	148048329	148048561	+	20.33574	NA	Intergenic	Intergenic	906190	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_6758	chr3	155962351	155962921	+	20.32310	NA	Intergenic	RLTR10D2|LTR|ERVK	-13718	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
diff_RLAGL_Vector_cond1_172	chr1	47545561	47546088	+	20.30622	NA	Intergenic	RMER15-int|LTR|ERVL	-78699	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
diff_RLAGL_Vector_cond1_854	chr10	6694563	6694782	+	20.20302	NA	Intergenic	Intergenic	-63921	NM_001302795	18390	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding
diff_RLAGL_Vector_cond1_4581	chr17	72121682	72121944	+	20.13743	NA	intron (NM_007439, intron 4 of 28)	intron (NM_007439, intron 4 of 28)	339866	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding
diff_RLAGL_Vector_cond1_3778	chr15	93974794	93975056	+	20.12432	NA	Intergenic	MTD|LTR|ERVL-MaLR	-47814	NR_045737	77248	Mm.410768	NR_045737		9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA
diff_RLAGL_Vector_cond1_6773	chr3	158386671	158387231	+	20.10064	NA	intron (NM_001081358, intron 3 of 27)	RLTR22_Mur|LTR|ERVK	175270	NM_001081358	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding
diff_RLAGL_Vector_cond1_6001	chr2	161704282	161704932	+	20.07265	NA	intron (NM_001291150, intron 13 of 30)	intron (NM_001291150, intron 13 of 30)	-595521	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
diff_RLAGL_Vector_cond1_4952	chr18	72532194	72533035	+	20.05000	NA	Intergenic	Lx8|LINE|L1	-181545	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
diff_RLAGL_Vector_cond1_6707	chr3	148190718	148191350	+	19.89608	NA	Intergenic	L2a|LINE|L2	763601	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_6702	chr3	147467434	147467733	+	19.84033	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	615216	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding
diff_RLAGL_Vector_cond1_10474	chrX	81070527	81070823	+	19.81665	NA	promoter-TSS (NM_138751)	promoter-TSS (NM_138751)	31	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding
diff_RLAGL_Vector_cond1_3089	chr14	35259268	35259515	+	19.81029	NA	intron (NM_008166, intron 5 of 15)	intron (NM_008166, intron 5 of 15)	364782	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA
diff_RLAGL_Vector_cond1_5633	chr2	93035704	93035973	+	19.77378	NA	intron (NM_001177536, intron 1 of 6)	intron (NM_001177536, intron 1 of 6)	6490	NR_110333	433456	Mm.235231	NM_001002794	ENSMUSG00000075027	4631405J19Rik	-	RIKEN cDNA 4631405J19 gene	ncRNA
diff_RLAGL_Vector_cond1_6907	chr4	31268891	31269357	+	19.72580	NA	Intergenic	MLTR11A|LTR|ERVK	604528	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
diff_RLAGL_Vector_cond1_4168	chr16	88072585	88072854	+	19.71815	NA	intron (NM_010348, intron 1 of 15)	intron (NM_010348, intron 1 of 15)	217539	NM_146072	14805	Mm.5134	NM_010348		Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding
diff_RLAGL_Vector_cond1_7577	chr5	22856518	22856764	+	19.70262	NA	intron (NM_001081231, intron 1 of 3)	intron (NM_001081231, intron 1 of 3)	-109757	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA
diff_RLAGL_Vector_cond1_7517	chr5	5116916	5117533	+	19.65161	NA	intron (NM_001310448, intron 5 of 13)	RLTR17D_Mm|LTR|ERVK	148844	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding
diff_RLAGL_Vector_cond1_4478	chr17	51321783	51322068	+	19.64002	NA	intron (NR_037250, intron 3 of 4)	intron (NR_037250, intron 3 of 4)	43937	NR_037253	100526485		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA
diff_RLAGL_Vector_cond1_100	chr1	24437507	24437841	+	19.63769	NA	intron (NM_007733, intron 14 of 50)	intron (NM_007733, intron 14 of 50)	149763	NM_007733	12823	Mm.329196	NM_007733		Col19a1	-	collagen, type XIX, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_3519	chr15	33082987	33083571	+	19.62877	NA	5' UTR (NM_018755, exon 1 of 9)	5' UTR (NM_018755, exon 1 of 9)	150	NM_018755	54381	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding
diff_RLAGL_Vector_cond1_4088	chr16	67620493	67621143	+	19.62797	NA	promoter-TSS (NM_001145977)	promoter-TSS (NM_001145977)	90	NM_001145977	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_10531	chrX	121645350	121645935	+	19.61869	NA	Intergenic	IAPEY5_LTR|LTR|ERVK	751743	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding
diff_RLAGL_Vector_cond1_1370	chr10	118675846	118676175	+	19.60933	NA	Intergenic	Intergenic	-119485	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA
diff_RLAGL_Vector_cond1_10009	chr9	35474408	35474722	+	19.58216	NA	intron (NM_021339, intron 10 of 18)	intron (NM_021339, intron 10 of 18)	22489	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding
diff_RLAGL_Vector_cond1_337	chr1	88220402	88220882	+	19.52726	NA	TTS (NM_145079)	TTS (NM_145079)	-6378	NM_001281466	100040766	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	ENSMUSG00000044873|Heatr7b1|OTTMUSG00000020804	maestro heat-like repeat family member 2A	protein-coding
diff_RLAGL_Vector_cond1_2401	chr12	102980653	102980995	+	19.49280	NA	intron (NM_001081017, intron 1 of 48)	MIRb|SINE|MIR	31965	NM_001081017	217843	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_473	chr1	129962561	129962939	+	19.48891	NA	intron (NM_172485, intron 15 of 27)	RLTR22_Mur|LTR|ERVK	460249	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding
diff_RLAGL_Vector_cond1_4724	chr18	6989073	6989609	+	19.44952	NA	intron (NM_177595, intron 5 of 6)	intron (NM_177595, intron 5 of 6)	15438	NM_177595	210719	Mm.257186	NM_177595	ENSMUSG00000061013	Mkx	9430023B20Rik|Irxl1	mohawk homeobox	protein-coding
diff_RLAGL_Vector_cond1_7670	chr5	42155651	42155971	+	19.43173	NA	intron (NR_131130, intron 1 of 2)	intron (NR_131130, intron 1 of 2)	87851	NR_131130	433882	Mm.319353	NR_131130		Gm16223	EG433882|OTTMUSG00000031875	predicted gene 16223	ncRNA
diff_RLAGL_Vector_cond1_4761	chr18	16419119	16419320	+	19.40412	NA	Intergenic	Intergenic	390027	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding
diff_RLAGL_Vector_cond1_3654	chr15	65637544	65637853	+	19.37087	NA	Intergenic	Intergenic	-149343	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_4711	chr18	3768400	3768661	+	19.36895	NA	Intergenic	Intergenic	260573	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding
diff_RLAGL_Vector_cond1_4765	chr18	19631869	19632236	+	19.36373	NA	Intergenic	Intergenic	370045	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
diff_RLAGL_Vector_cond1_3250	chr14	82002816	82003264	+	19.35913	NA	Intergenic	Intergenic	2002738	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
diff_RLAGL_Vector_cond1_8843	chr7	17058154	17058562	+	19.31792	NA	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	-1679	NM_016868	53417	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding
diff_RLAGL_Vector_cond1_2863	chr13	89911231	89911490	+	19.30779	NA	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-168848	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding
diff_RLAGL_Vector_cond1_8768	chr6	146185610	146185915	+	19.30004	NA	intron (NM_019923, intron 48 of 56)	intron (NM_019923, intron 48 of 56)	251615	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding
diff_RLAGL_Vector_cond1_8103	chr5	147992567	147993359	+	19.23787	NA	intron (NM_029920, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	35643	NM_029920	77521	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding
diff_RLAGL_Vector_cond1_4296	chr17	19509484	19509755	+	19.22449	NA	intron (NM_001104562, intron 1 of 5)	RLTR22_Mur|LTR|ERVK	4808	NM_001104562	627537	Mm.469858	NM_001104562	ENSMUSG00000091859	Vmn2r100	EG627537	vomeronasal 2, receptor 100	protein-coding
diff_RLAGL_Vector_cond1_2080	chr12	12527512	12527724	+	19.19192	NA	Intergenic	Intergenic	-135143	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
diff_RLAGL_Vector_cond1_9359	chr8	7060253	7060657	+	19.18486	NA	Intergenic	MER58B|DNA|hAT-Charlie	1600318	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
diff_RLAGL_Vector_cond1_109	chr1	27044279	27045628	+	19.17289	NA	Intergenic	Intergenic	-357493	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding
diff_RLAGL_Vector_cond1_2208	chr12	44056390	44057072	+	19.16897	NA	Intergenic	Intergenic	153337	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
diff_RLAGL_Vector_cond1_412	chr1	107765377	107765616	+	19.15597	NA	Intergenic	ORR1A3|LTR|ERVL-MaLR	-151763	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
diff_RLAGL_Vector_cond1_444	chr1	119209579	119210002	+	19.10823	NA	Intergenic	Intergenic	-156171	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding
diff_RLAGL_Vector_cond1_7715	chr5	50644143	50644373	+	19.10736	NA	Intergenic	Intergenic	391496	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
diff_RLAGL_Vector_cond1_7931	chr5	113437128	113437376	+	19.08284	NA	Intergenic	Intergenic	79958	NM_001012726	503692	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding
diff_RLAGL_Vector_cond1_9008	chr7	63558949	63559211	+	19.05178	NA	intron (NM_130880, intron 1 of 13)	intron (NM_130880, intron 1 of 13)	114308	NM_130880	170711	Mm.156872	NM_130880	ENSMUSG00000033510	Otud7a	AJ430384|Otud7	OTU domain containing 7A	protein-coding
diff_RLAGL_Vector_cond1_252	chr1	71432357	71432753	+	19.03644	NA	Intergenic	RMER15|LTR|ERVL	-17645	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
diff_RLAGL_Vector_cond1_9982	chr9	29318677	29319149	+	19.02812	NA	intron (NM_172290, intron 2 of 7)	intron (NM_172290, intron 2 of 7)	644216	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
diff_RLAGL_Vector_cond1_2063	chr12	9756478	9756721	+	18.98617	NA	Intergenic	LTR10_RN|LTR|ERVK	182157	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6310	chr3	55242409	55242714	+	18.98483	NA	promoter-TSS (NM_001195538)	promoter-TSS (NM_001195538)	35	NM_019978	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
diff_RLAGL_Vector_cond1_3125	chr14	50062508	50062998	+	18.98446	NA	Intergenic	MMERVK10C-int|LTR|ERVK	21926	NM_146316	258313	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding
diff_RLAGL_Vector_cond1_8107	chr5	148645135	148645697	+	18.95343	NA	Intergenic	RLTR14|LTR|ERV1	-92628	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding
diff_RLAGL_Vector_cond1_2868	chr13	90679201	90679458	+	18.89727	NA	Intergenic	Intergenic	226026	NM_001145879	435376	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
diff_RLAGL_Vector_cond1_3456	chr15	10160204	10161050	+	18.87293	NA	Intergenic	Intergenic	-16611	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding
diff_RLAGL_Vector_cond1_556	chr1	147343614	147344090	+	18.85521	NA	Intergenic	RLTR34C_MM|LTR|ERVK	846165	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_5574	chr2	78980827	78981239	+	18.84305	NA	Intergenic	Intergenic	111986	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
diff_RLAGL_Vector_cond1_4735	chr18	8880192	8880539	+	18.83519	NA	Intergenic	ID_B1|SINE|B4	-332491	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled homolog 8 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2952	chr13	116309537	116309900	+	18.83168	NA	promoter-TSS (NM_021459)	promoter-TSS (NM_021459)	-30	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding
diff_RLAGL_Vector_cond1_10623	chrY	82071432	82071784	+	18.81708	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-153607	NM_001037748	380994	Mm.391354	NM_001037748	ENSMUSG00000093993	Gm20736	-	predicted gene, 20736	protein-coding
diff_RLAGL_Vector_cond1_8996	chr7	57421065	57421371	+	18.81308	NA	intron (NM_176942, intron 7 of 9)	intron (NM_176942, intron 7 of 9)	33946	NR_033504	791383	Mm.403104	NR_033504	ENSMUSG00000055048	Gm9962	ENSMUSG00000055048	predicted gene 9962	ncRNA
diff_RLAGL_Vector_cond1_6559	chr3	119431315	119432001	+	18.80794	NA	3' UTR (NM_170778, exon 23 of 23)	3' UTR (NM_170778, exon 23 of 23)	351730	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_543	chr1	143941480	143941800	+	18.75095	NA	Intergenic	Intergenic	62509	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding
diff_RLAGL_Vector_cond1_5473	chr2	54769119	54769377	+	18.74037	NA	intron (NM_173030, intron 4 of 12)	intron (NM_173030, intron 4 of 12)	332861	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
diff_RLAGL_Vector_cond1_3152	chr14	58046716	58047134	+	18.73879	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-25761	NM_013518	14180	Mm.8846	NM_013518		Fgf9	Eks	fibroblast growth factor 9	protein-coding
diff_RLAGL_Vector_cond1_6606	chr3	130256118	130256476	+	18.72876	NA	intron (NM_001244952, intron 2 of 35)	intron (NM_001244952, intron 2 of 35)	75452	NM_198711	77018	Mm.91728	NM_029838	ENSMUSG00000058897	Col25a1	2700062B08Rik|CLAC-P	collagen, type XXV, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_8735	chr6	142507834	142508179	+	18.70603	NA	promoter-TSS (NM_008492)	promoter-TSS (NM_008492)	-49	NM_001316322	16832	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding
diff_RLAGL_Vector_cond1_423	chr1	113453220	113453456	+	18.69452	NA	Intergenic	B4|SINE|B4	-1588420	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
diff_RLAGL_Vector_cond1_4764	chr18	19524308	19524725	+	18.68144	NA	Intergenic	Intergenic	477581	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
diff_RLAGL_Vector_cond1_10338	chr9	118638927	118639147	+	18.68010	NA	intron (NM_133721, intron 4 of 27)	MIR3|SINE|MIR	32328	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding
diff_RLAGL_Vector_cond1_3244	chr14	81111797	81112026	+	18.60757	NA	Intergenic	Intergenic	1111609	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
diff_RLAGL_Vector_cond1_6620	chr3	132585628	132585928	+	18.60371	NA	Intergenic	Intergenic	-44413	NM_001270430	433653		NM_001270430		Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_6662	chr3	142700845	142701350	+	18.59948	NA	promoter-TSS (NM_173763)	promoter-TSS (NM_173763)	49	NM_173763	229905	Mm.289643	NM_173763	ENSMUSG00000040213	Ccbl2	KATIII|Kat3	cysteine conjugate-beta lyase 2	protein-coding
diff_RLAGL_Vector_cond1_6487	chr3	99741390	99741777	+	18.58163	NA	Intergenic	Intergenic	-143834	NM_028892	74362	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding
diff_RLAGL_Vector_cond1_1445	chr10	129004162	129004858	+	18.57242	NA	Intergenic	RLTR6-int|LTR|ERV1	-6777	NM_146862	258861	Mm.377724	NM_146862	ENSMUSG00000063374	Olfr763	MOR269-2	olfactory receptor 763	protein-coding
diff_RLAGL_Vector_cond1_3294	chr14	100842909	100843124	+	18.56039	NA	Intergenic	Intergenic	357053	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding
diff_RLAGL_Vector_cond1_6760	chr3	156031821	156032521	+	18.51581	NA	Intergenic	Intergenic	55817	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
diff_RLAGL_Vector_cond1_3465	chr15	11539433	11539804	+	18.51431	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-139960	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding
diff_RLAGL_Vector_cond1_990	chr10	36555154	36555869	+	18.51262	NA	intron (NM_001253355, intron 2 of 5)	intron (NM_001253355, intron 2 of 5)	48704	NM_001253355	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
diff_RLAGL_Vector_cond1_8532	chr6	107555441	107555747	+	18.50290	NA	intron (NM_008516, intron 1 of 1)	intron (NM_008516, intron 1 of 1)	25868	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding
diff_RLAGL_Vector_cond1_6299	chr3	53863999	53864258	+	18.49830	NA	promoter-TSS (NM_026435)	promoter-TSS (NM_026435)	-321	NM_026435	67890	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|ENSMUSG00000074598|Gm10726	ubiquitin-fold modifier 1	protein-coding
diff_RLAGL_Vector_cond1_2841	chr13	83608032	83608586	+	18.40936	NA	intron (NM_025282, intron 4 of 10)	intron (NM_025282, intron 4 of 10)	104275	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
diff_RLAGL_Vector_cond1_7362	chr4	137210524	137210917	+	18.39551	NA	Intergenic	Intergenic	-45654	NR_040443	100503595	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	OTTMUSG00000009822	predicted gene 13003	ncRNA
diff_RLAGL_Vector_cond1_3964	chr16	39672620	39672918	+	18.38156	NA	Intergenic	Intergenic	770424	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
diff_RLAGL_Vector_cond1_1782	chr11	81869142	81869354	+	18.35238	NA	intron (NR_038010, intron 2 of 4)	intron (NR_038010, intron 2 of 4)	8571	NR_038010	71388	Mm.158687	NR_038010	ENSMUSG00000020703	5530401A14Rik	-	RIKEN cDNA 5530401A14 gene	ncRNA
diff_RLAGL_Vector_cond1_8664	chr6	133104952	133105493	+	18.34519	NA	promoter-TSS (NM_001271582)	promoter-TSS (NM_001271582)	-17	NR_073368	381820	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding
diff_RLAGL_Vector_cond1_873	chr10	9529406	9529687	+	18.27214	NA	Intergenic	Intergenic	145662	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_8780	chr6	148818549	148819002	+	18.26974	NA	intron (NM_001081113, intron 3 of 24)	RMER1A|Other|Other	12692	NM_001081113	320727	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding
diff_RLAGL_Vector_cond1_7742	chr5	54362976	54363211	+	18.26354	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	13101	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
diff_RLAGL_Vector_cond1_3345	chr14	110415494	110415791	+	18.21354	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	339507	NM_175499	239250	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding
diff_RLAGL_Vector_cond1_5033	chr18	88117629	88117868	+	18.21040	NA	Intergenic	Intergenic	776459	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
diff_RLAGL_Vector_cond1_4307	chr17	21707327	21707732	+	18.18973	NA	promoter-TSS (NM_001008501)	promoter-TSS (NM_001008501)	-212	NM_001008501	240034	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding
diff_RLAGL_Vector_cond1_9897	chr9	7156081	7156325	+	18.18655	NA	intron (NM_029851, intron 17 of 88)	RLTR17D_Mm|LTR|ERVK	20843	NM_029851	110350	Mm.237596	NM_029851	ENSMUSG00000047193	Dync2h1	4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997	dynein cytoplasmic 2 heavy chain 1	protein-coding
diff_RLAGL_Vector_cond1_1101	chr10	68784586	68784804	+	18.15215	NA	Intergenic	Intergenic	60949	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding
diff_RLAGL_Vector_cond1_6651	chr3	141299566	141300087	+	18.14997	NA	Intergenic	Intergenic	-87471	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding
diff_RLAGL_Vector_cond1_9676	chr8	84198365	84198743	+	18.14552	NA	Intergenic	CpG	-9964	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA
diff_RLAGL_Vector_cond1_8366	chr6	62045083	62045385	+	18.13032	NA	intron (NM_001164316, intron 10 of 10)	RLTR22_Mus|LTR|ERVK	-864424	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
diff_RLAGL_Vector_cond1_3967	chr16	39755257	39755534	+	18.12074	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	853050	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
diff_RLAGL_Vector_cond1_2454	chr12	112106567	112106960	+	18.11020	NA	promoter-TSS (NM_001081169)	promoter-TSS (NM_001081169)	80	NM_001081169	104816	Mm.77133	NM_001081169	ENSMUSG00000037686	Aspg	A530050D06Rik|AI429460|Gm690	asparaginase homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_2191	chr12	38778588	38779064	+	18.08731	NA	Intergenic	CpG	-1432	NM_007960	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
diff_RLAGL_Vector_cond1_2061	chr12	9368666	9369104	+	18.07995	NA	Intergenic	Intergenic	201700	NR_045488	69420	Mm.396193	NR_045488	ENSMUSG00000099360	1700022H16Rik	-	RIKEN cDNA 1700022H16 gene	ncRNA
diff_RLAGL_Vector_cond1_8105	chr5	148303016	148303224	+	18.06216	NA	intron (NM_029920, intron 12 of 14)	Lx9|LINE|L1	89695	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding
diff_RLAGL_Vector_cond1_5614	chr2	87833449	87833979	+	18.05266	NA	exon (NM_001011519, exon 1 of 1)	exon (NM_001011519, exon 1 of 1)	673	NM_001011519	258220	Mm.377383	NM_001011519	ENSMUSG00000061875	Olfr1148	MOR264-7	olfactory receptor 1148	protein-coding
diff_RLAGL_Vector_cond1_9944	chr9	19621768	19622371	+	18.05206	NA	promoter-TSS (NM_172918)	promoter-TSS (NM_172918)	-22	NM_172918	244713	Mm.67366	NM_172918		Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding
diff_RLAGL_Vector_cond1_10080	chr9	50854070	50854326	+	18.02661	NA	Intergenic	Intergenic	-2726	NM_001286553	73699	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding
diff_RLAGL_Vector_cond1_1446	chr10	129313051	129313465	+	18.01816	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-8367	NM_146284	258281	Mm.377412	NM_146284	ENSMUSG00000049573	Olfr780	MOR114-12	olfactory receptor 780	protein-coding
diff_RLAGL_Vector_cond1_195	chr1	56969441	56969745	+	18.01218	NA	intron (NM_139146, intron 2 of 10)	intron (NM_139146, intron 2 of 10)	1741	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_9587	chr8	66860014	66860427	+	17.98437	NA	promoter-TSS (NM_001163564)	promoter-TSS (NM_001163564)	3	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_4317	chr17	22819889	22820166	+	17.98411	NA	Intergenic	L1_Mur3|LINE|L1	-2280	NR_030709	100042679	Mm.484007	NR_030709		Gm16386	EG545191|ENSMUSG00000073442|Gm21017	zinc finger protein 946 pseudogene	pseudo
diff_RLAGL_Vector_cond1_1290	chr10	103369097	103369421	+	17.92490	NA	intron (NM_001252330, intron 1 of 11)	intron (NM_001252330, intron 1 of 11)	1451	NM_175328	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding
diff_RLAGL_Vector_cond1_6605	chr3	130216614	130216880	+	17.90517	NA	intron (NM_001244952, intron 2 of 35)	intron (NM_001244952, intron 2 of 35)	35902	NM_198711	77018	Mm.91728	NM_029838	ENSMUSG00000058897	Col25a1	2700062B08Rik|CLAC-P	collagen, type XXV, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_8006	chr5	132436950	132437268	+	17.89730	NA	intron (NM_177047, intron 1 of 18)	intron (NM_177047, intron 1 of 18)	105234	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
diff_RLAGL_Vector_cond1_377	chr1	96871871	96872409	+	17.84342	NA	promoter-TSS (NM_172658)	promoter-TSS (NM_172658)	31	NM_172658	227394	Mm.11662	NM_172658		Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding
diff_RLAGL_Vector_cond1_6597	chr3	128933206	128933644	+	17.83374	NA	Intergenic	MIRb|SINE|MIR	-266453	NM_001042504	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_4061	chr16	59487287	59487604	+	17.81703	NA	exon (NM_025910, exon 7 of 10)	exon (NM_025910, exon 7 of 10)	15670	NM_025910	67014	Mm.289150	NM_025910	ENSMUSG00000022724	Mina	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204	myc induced nuclear antigen	protein-coding
diff_RLAGL_Vector_cond1_9738	chr8	104061176	104061864	+	17.81335	NA	Intergenic	Intergenic	-40105	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding
diff_RLAGL_Vector_cond1_582	chr1	153691234	153691486	+	17.79330	NA	intron (NM_026380, intron 6 of 6)	RSINE1|SINE|B4	38323	NM_026380	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding
diff_RLAGL_Vector_cond1_441	chr1	118881012	118881219	+	17.77523	NA	intron (NM_001081125, intron 3 of 13)	intron (NM_001081125, intron 3 of 13)	-73105	NR_105764	102465176		NR_105764	ENSMUSG00000098273	Mir6346	Gm27829|mmu-mir-6346	microRNA 6346	ncRNA
diff_RLAGL_Vector_cond1_6436	chr3	87982243	87982613	+	17.75980	NA	Intergenic	Intergenic	11335	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding
diff_RLAGL_Vector_cond1_7258	chr4	120522392	120522635	+	17.72499	NA	exon (NM_013883, exon 14 of 17)	exon (NM_013883, exon 14 of 17)	-9718	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding
diff_RLAGL_Vector_cond1_6541	chr3	110586770	110587018	+	17.70835	NA	Intergenic	Intergenic	-335895	NM_178891	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding
diff_RLAGL_Vector_cond1_1255	chr10	92722097	92722890	+	17.69791	NA	promoter-TSS (NM_008682)	promoter-TSS (NM_008682)	-75	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding
diff_RLAGL_Vector_cond1_2062	chr12	9584858	9585073	+	17.67706	NA	Intergenic	Intergenic	10523	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2421	chr12	106010040	106010350	+	17.67594	NA	promoter-TSS (NM_001029844)	promoter-TSS (NM_001029844)	-68	NM_001029843	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding
diff_RLAGL_Vector_cond1_6754	chr3	155093052	155093664	+	17.64667	NA	promoter-TSS (NM_029330)	promoter-TSS (NM_029330)	20	NM_029330	75540	Mm.35218	NM_029330	ENSMUSG00000053870	Fpgt	1700016E03Rik	fucose-1-phosphate guanylyltransferase	protein-coding
diff_RLAGL_Vector_cond1_9642	chr8	78477490	78477720	+	17.64076	NA	Intergenic	Intergenic	31323	NM_001252089	19656	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding
diff_RLAGL_Vector_cond1_5851	chr2	140395114	140395601	+	17.61310	NA	promoter-TSS (NM_001013802)	promoter-TSS (NM_001013802)	-73	NM_001013802	72899	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_4766	chr18	19644077	19644557	+	17.59257	NA	Intergenic	Intergenic	357780	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
diff_RLAGL_Vector_cond1_10230	chr9	94429198	94429535	+	17.58855	NA	Intergenic	Intergenic	108715	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
diff_RLAGL_Vector_cond1_8927	chr7	39544180	39544605	+	17.58029	NA	Intergenic	Intergenic	26626	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding
diff_RLAGL_Vector_cond1_9768	chr8	109361990	109362262	+	17.57796	NA	Intergenic	MER115|DNA|hAT-Tip100	-21218	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo
diff_RLAGL_Vector_cond1_10012	chr9	35777790	35778093	+	17.55934	NA	5' UTR (NM_001167673, exon 1 of 3)	5' UTR (NM_001167673, exon 1 of 3)	168	NM_001167673	100312986	Mm.437659	NM_001167673	ENSMUSG00000090738	Gm17727	Pate-e	predicted gene, 17727	protein-coding
diff_RLAGL_Vector_cond1_7578	chr5	22864249	22864540	+	17.55454	NA	intron (NM_001081231, intron 1 of 3)	intron (NM_001081231, intron 1 of 3)	-117510	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA
diff_RLAGL_Vector_cond1_3507	chr15	28260307	28260598	+	17.55239	NA	intron (NM_133365, intron 16 of 78)	intron (NM_133365, intron 16 of 78)	56686	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
diff_RLAGL_Vector_cond1_9603	chr8	70406421	70406886	+	17.54816	NA	intron (NM_001004062, intron 2 of 13)	intron (NM_001004062, intron 2 of 13)	32920	NM_001004062	382056	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding
diff_RLAGL_Vector_cond1_3243	chr14	81109631	81109912	+	17.52025	NA	Intergenic	Intergenic	1109469	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
diff_RLAGL_Vector_cond1_10522	chrX	109684380	109684797	+	17.48694	NA	Intergenic	ORR1C1|LTR|ERVL-MaLR	487832	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding
diff_RLAGL_Vector_cond1_4757	chr18	15889441	15889740	+	17.48040	NA	Intergenic	Intergenic	-171544	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
diff_RLAGL_Vector_cond1_3317	chr14	103513168	103513494	+	17.46954	NA	promoter-TSS (NM_022886)	promoter-TSS (NM_022886)	-10	NM_022886	64929	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding
diff_RLAGL_Vector_cond1_2489	chr12	118198581	118199106	+	17.46911	NA	5' UTR (NM_010060, exon 1 of 82)	5' UTR (NM_010060, exon 1 of 82)	200	NM_010060	13411	Mm.390540	NM_010060	ENSMUSG00000018581	Dnah11	Dnahc11|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd	dynein, axonemal, heavy chain 11	protein-coding
diff_RLAGL_Vector_cond1_5912	chr2	148679337	148679701	+	17.44752	NA	Intergenic	RMER21A|LTR|ERV1	-1601	NM_028986	74533	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding
diff_RLAGL_Vector_cond1_2426	chr12	107753022	107753320	+	17.42984	NA	Intergenic	Intergenic	-17683	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA
diff_RLAGL_Vector_cond1_4108	chr16	72924383	72924821	+	17.42799	NA	intron (NM_019413, intron 3 of 28)	intron (NM_019413, intron 3 of 28)	261453	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4537	chr17	64331768	64332437	+	17.42548	NA	promoter-TSS (NM_001025309)	promoter-TSS (NM_001025309)	-219	NM_001025309	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding
diff_RLAGL_Vector_cond1_9286	chr7	136294415	136294738	+	17.38843	NA	intron (NR_102277, intron 3 of 3)	RLTR17B_Mm|LTR|ERVK	26252	NR_102277	77383	Mm.227745	NR_102277		C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA
diff_RLAGL_Vector_cond1_9338	chr8	4165862	4166674	+	17.37465	NA	promoter-TSS (NM_001039578)	promoter-TSS (NM_001039578)	-299	NM_001039578	213027	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding
diff_RLAGL_Vector_cond1_5037	chr18	88927356	88927767	+	17.36642	NA	Intergenic	Intergenic	-33354	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
diff_RLAGL_Vector_cond1_5200	chr19	52449486	52449799	+	17.35266	NA	Intergenic	Intergenic	185345	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding
diff_RLAGL_Vector_cond1_3562	chr15	44748103	44748690	+	17.35139	NA	exon (NM_176998, exon 2 of 8)	exon (NM_176998, exon 2 of 8)	276	NM_001285840	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
diff_RLAGL_Vector_cond1_2466	chr12	113623279	113623544	+	17.34882	NA	Intergenic	Intergenic	79503	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding
diff_RLAGL_Vector_cond1_9002	chr7	60013218	60013672	+	17.31374	NA	intron (NM_001082962, intron 2 of 10)	RLTR14-int|LTR|ERV1	-8289	NM_013670	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding
diff_RLAGL_Vector_cond1_6143	chr3	7470936	7471135	+	17.31090	NA	Intergenic	L1Md_F2|LINE|L1	-32391	NM_173181	67306	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding
diff_RLAGL_Vector_cond1_5458	chr2	50101973	50102335	+	17.30318	NA	intron (NM_177139, intron 1 of 4)	intron (NM_177139, intron 1 of 4)	35725	NR_033304	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_10312	chr9	114383065	114383581	+	17.18160	NA	intron (NM_019922, intron 3 of 6)	intron (NM_019922, intron 3 of 6)	7389	NM_019922	56693	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding
diff_RLAGL_Vector_cond1_3396	chr14	122902890	122903310	+	17.18152	NA	intron (NM_145466, intron 1 of 2)	intron (NM_145466, intron 1 of 2)	10065	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding
diff_RLAGL_Vector_cond1_10215	chr9	90277798	90278678	+	17.16947	NA	Intergenic	Intergenic	-7469	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding
diff_RLAGL_Vector_cond1_2803	chr13	72210539	72210830	+	17.15797	NA	Intergenic	Intergenic	-246961	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4632	chr17	81092875	81093131	+	17.15319	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-27918	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_5309	chr2	17730804	17731549	+	17.15315	NA	promoter-TSS (NM_028757)	promoter-TSS (NM_028757)	-108	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding
diff_RLAGL_Vector_cond1_2500	chr12	119051729	119051955	+	17.15262	NA	Intergenic	Intergenic	-85421	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding
diff_RLAGL_Vector_cond1_8681	chr6	134773979	134774311	+	17.12934	NA	intron (NM_130447, intron 1 of 6)	intron (NM_130447, intron 1 of 6)	18483	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding
diff_RLAGL_Vector_cond1_10426	chrX	47182951	47183226	+	17.12894	NA	Intergenic	Intergenic	709464	NM_053123	93761	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding
diff_RLAGL_Vector_cond1_7036	chr4	70141484	70141823	+	17.12092	NA	Intergenic	MTC|LTR|ERVL-MaLR	268782	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_5681	chr2	106974082	106974742	+	17.12024	NA	promoter-TSS (NM_001025102)	promoter-TSS (NM_001025102)	-15	NM_001025102	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding
diff_RLAGL_Vector_cond1_3674	chr15	69041671	69042210	+	17.08468	NA	intron (NM_010158, intron 6 of 8)	intron (NM_010158, intron 6 of 8)	113520	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
diff_RLAGL_Vector_cond1_5809	chr2	134961527	134961869	+	17.05293	NA	intron (NM_019677, intron 2 of 32)	intron (NM_019677, intron 2 of 32)	175534	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding
diff_RLAGL_Vector_cond1_8306	chr6	48215136	48215634	+	17.03652	NA	Intergenic	Intergenic	-128792	NM_001163475	69228	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding
diff_RLAGL_Vector_cond1_2356	chr12	89811933	89812777	+	17.01357	NA	promoter-TSS (NM_001252074)	promoter-TSS (NM_001252074)	-128	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
diff_RLAGL_Vector_cond1_3576	chr15	49664907	49665565	+	17.00470	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-873247	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
diff_RLAGL_Vector_cond1_9543	chr8	54122434	54122666	+	16.99612	NA	intron (NM_009506, intron 1 of 6)	intron (NM_009506, intron 1 of 6)	45018	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
diff_RLAGL_Vector_cond1_3920	chr16	28404161	28404541	+	16.99148	NA	intron (NM_010199, intron 2 of 5)	B1F|SINE|Alu	41724	NM_001276420	14167	Mm.7996	NM_010199		Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding
diff_RLAGL_Vector_cond1_9298	chr7	138940423	138940702	+	16.97498	NA	promoter-TSS (NM_028708)	promoter-TSS (NM_028708)	-168	NM_028708	74004	Mm.334298	NM_028708		Jakmip3	6330417G02Rik|AI593226|mKIAA4091	janus kinase and microtubule interacting protein 3	protein-coding
diff_RLAGL_Vector_cond1_5318	chr2	19657317	19658115	+	16.96706	NA	promoter-TSS (NM_027715)	promoter-TSS (NM_027715)	181	NR_033642	100041244	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA
diff_RLAGL_Vector_cond1_3966	chr16	39754314	39754566	+	16.94970	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	852095	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
diff_RLAGL_Vector_cond1_27	chr1	8872726	8873135	+	16.94552	NA	intron (NM_001290392, intron 3 of 17)	ORR1B2|LTR|ERVL-MaLR	426947	NM_027671	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_2443	chr12	109436283	109436576	+	16.94205	NA	Intergenic	Intergenic	-16394	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8486	chr6	92277102	92277460	+	16.92896	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	-32631	NM_009426	22044	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding
diff_RLAGL_Vector_cond1_4612	chr17	77244972	77245815	+	16.90722	NA	Intergenic	RMER17B|LTR|ERVK	-954855	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
diff_RLAGL_Vector_cond1_791	chr1	189959892	189960107	+	16.89161	NA	Intergenic	Intergenic	-37711	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_9416	chr8	23411341	23411608	+	16.89144	NA	promoter-TSS (NM_013834)	promoter-TSS (NM_013834)	-28	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding
diff_RLAGL_Vector_cond1_6977	chr4	51808482	51809121	+	16.88907	NA	Intergenic	Intergenic	242309	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA
diff_RLAGL_Vector_cond1_7518	chr5	5186130	5186405	+	16.88182	NA	intron (NM_001310448, intron 4 of 13)	intron (NM_001310448, intron 4 of 13)	79801	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding
diff_RLAGL_Vector_cond1_3145	chr14	55617735	55618207	+	16.86929	NA	promoter-TSS (NM_020002)	promoter-TSS (NM_020002)	-195	NM_020002	56739	Mm.23149	NM_020002	ENSMUSG00000002324	Rec8	Rec8L1|mrec	REC8 meiotic recombination protein	protein-coding
diff_RLAGL_Vector_cond1_10434	chrX	52613687	52614267	+	16.86058	NA	promoter-TSS (NM_016697)	promoter-TSS (NM_016697)	-3	NM_016697	14734	Mm.22515	NM_016697	ENSMUSG00000055653	Gpc3	OCI-5	glypican 3	protein-coding
diff_RLAGL_Vector_cond1_7650	chr5	37699811	37700033	+	16.85598	NA	intron (NM_022416, intron 1 of 11)	L1MA4|LINE|L1	17231	NM_022416	64293	Mm.103714	NM_022416	ENSMUSG00000029123	Stk32b	2510009F08Rik|STKG6|Stk32|YANK2	serine/threonine kinase 32B	protein-coding
diff_RLAGL_Vector_cond1_8765	chr6	145546020	145546334	+	16.84668	NA	Intergenic	Intergenic	-69786	NM_009449	22147	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding
diff_RLAGL_Vector_cond1_1035	chr10	51763323	51763581	+	16.84505	NA	Intergenic	Intergenic	-6258	NR_045158	71090	Mm.72588	NM_027670	ENSMUSG00000062224	4933411G06Rik	-	Sumo1 pseudogene	pseudo
diff_RLAGL_Vector_cond1_4099	chr16	70213866	70214429	+	16.82177	NA	Intergenic	RLTR25B|LTR|ERVK	-99802	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding
diff_RLAGL_Vector_cond1_2556	chr13	13218234	13218452	+	16.79236	NA	Intergenic	Intergenic	35627	NM_001311129	107849	Mm.392548	NM_181852	ENSMUSG00000055360	Prl2c5	Ghd3|MRP-4|Mrpplf4|PLF-4	prolactin family 2, subfamily c, member 5	protein-coding
diff_RLAGL_Vector_cond1_10208	chr9	88599467	88599806	+	16.78985	NA	promoter-TSS (NR_040766)	promoter-TSS (NR_040766)	-393	NR_040766	320692	Mm.427378	NR_040766	ENSMUSG00000097073	9430037G07Rik	-	RIKEN cDNA 9430037G07 gene	ncRNA
diff_RLAGL_Vector_cond1_3214	chr14	74519569	74519868	+	16.78522	NA	Intergenic	Intergenic	-121122	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding
diff_RLAGL_Vector_cond1_65	chr1	17506563	17507104	+	16.77374	NA	Intergenic	Intergenic	-95068	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding
diff_RLAGL_Vector_cond1_5920	chr2	150136406	150137064	+	16.77335	NA	promoter-TSS (NM_023266)	promoter-TSS (NM_023266)	-57	NM_023266	104348	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding
diff_RLAGL_Vector_cond1_8914	chr7	35901931	35902135	+	16.77137	NA	Intergenic	Intergenic	-99044	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding
diff_RLAGL_Vector_cond1_10235	chr9	95109814	95110296	+	16.76624	NA	intron (NM_177909, intron 12 of 15)	LTR33|LTR|ERVL	297215	NM_018763	54371	Mm.212446	NM_018763		Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding
diff_RLAGL_Vector_cond1_9478	chr8	38373097	38373427	+	16.76429	NA	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	-121060	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA
diff_RLAGL_Vector_cond1_10227	chr9	92856306	92856951	+	16.71622	NA	Intergenic	Intergenic	137912	NR_040770	331003	Mm.50805	NR_040770	ENSMUSG00000101734	4933400C23Rik	4933400C23	RIKEN cDNA 4933400C23 gene	ncRNA
diff_RLAGL_Vector_cond1_1245	chr10	89997528	89997858	+	16.71235	NA	intron (NM_001128086, intron 1 of 24)	URR1A|DNA|hAT-Charlie	124184	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_9895	chr9	6353357	6353907	+	16.70633	NA	intron (NM_027924, intron 5 of 6)	intron (NM_027924, intron 5 of 6)	-87085	NM_027942	71829	Mm.141452	NM_027942	ENSMUSG00000047619	Ddi1	1700011N24Rik	DDI1, DNA-damage inducible 1, homolog 1 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1475	chr11	7473987	7474529	+	16.69688	NA	Intergenic	Intergenic	-260335	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_9163	chr7	104353310	104353848	+	16.68812	NA	promoter-TSS (NM_001146007)	promoter-TSS (NM_001146007)	-221	NM_001146007	319236	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding
diff_RLAGL_Vector_cond1_781	chr1	188330468	188330879	+	16.68760	NA	intron (NM_021408, intron 3 of 70)	intron (NM_021408, intron 3 of 70)	67835	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin	Usher syndrome 2A (autosomal recessive, mild)	protein-coding
diff_RLAGL_Vector_cond1_1310	chr10	107300618	107300942	+	16.67659	NA	intron (NM_001284329, intron 1 of 5)	MTC|LTR|ERVL-MaLR	28386	NM_001284329	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_8415	chr6	79042717	79043101	+	16.64421	NA	Intergenic	RLTR31_Mm|LTR|ERVK	10867	NR_040302	100504701	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA
diff_RLAGL_Vector_cond1_10564	chrX	141475244	141475851	+	16.62866	NA	5' UTR (NM_001163155, exon 1 of 51)	5' UTR (NM_001163155, exon 1 of 51)	128	NM_007736	12830	Mm.286892	NM_007736	ENSMUSG00000031274	Col4a5	-	collagen, type IV, alpha 5	protein-coding
diff_RLAGL_Vector_cond1_8183	chr6	14023608	14024110	+	16.60571	NA	Intergenic	Lx7|LINE|L1	152290	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
diff_RLAGL_Vector_cond1_8809	chr7	7136294	7136926	+	16.57412	NA	exon (NM_029584, exon 1 of 4)	exon (NM_029584, exon 1 of 4)	145	NM_029584	76373	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding
diff_RLAGL_Vector_cond1_8064	chr5	139354033	139354291	+	16.56602	NA	intron (NM_001160265, intron 2 of 8)	intron (NM_001160265, intron 2 of 8)	1545	NM_001160265	545817	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_542	chr1	143929701	143930084	+	16.56211	NA	Intergenic	Intergenic	74257	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding
diff_RLAGL_Vector_cond1_2867	chr13	90229162	90229446	+	16.55092	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	139637	NM_025335	66074	Mm.241387	NM_025335		Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding
diff_RLAGL_Vector_cond1_2743	chr13	63188836	63189043	+	16.53168	NA	intron (NM_001289924, intron 7 of 16)	intron (NM_001289924, intron 7 of 16)	-51090	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|Aopep|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding
diff_RLAGL_Vector_cond1_5179	chr19	46339683	46339946	+	16.52504	NA	Intergenic	Intergenic	-1154	NM_001164292	67116	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_7382	chr4	140658067	140658458	+	16.50369	NA	intron (NM_001290803, intron 1 of 28)	intron (NM_001290803, intron 1 of 28)	7625	NM_001290803	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding
diff_RLAGL_Vector_cond1_4338	chr17	25919861	25920530	+	16.49619	NA	promoter-TSS (NM_139154)	promoter-TSS (NM_139154)	-481	NM_139154	224624	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_4807	chr18	33890596	33890808	+	16.49328	NA	intron (NM_013512, intron 4 of 23)	intron (NM_013512, intron 4 of 23)	95810	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_10521	chrX	109502502	109502823	+	16.48536	NA	Intergenic	Lx7|LINE|L1	305906	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding
diff_RLAGL_Vector_cond1_3090	chr14	35773288	35773539	+	16.48412	NA	Intergenic	Lx8|LINE|L1	38565	NM_001033766	239036	Mm.239970	NM_001033766	ENSMUSG00000041068	4930596D02Rik	-	RIKEN cDNA 4930596D02 gene	protein-coding
diff_RLAGL_Vector_cond1_2280	chr12	67123910	67124359	+	16.47451	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	98415	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
diff_RLAGL_Vector_cond1_1112	chr10	70740116	70740466	+	16.46974	NA	Intergenic	Intergenic	-84328	NR_045292	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA
diff_RLAGL_Vector_cond1_2555	chr13	13216398	13216778	+	16.45578	NA	Intergenic	MTD|LTR|ERVL-MaLR	33872	NM_001311129	107849	Mm.392548	NM_181852	ENSMUSG00000055360	Prl2c5	Ghd3|MRP-4|Mrpplf4|PLF-4	prolactin family 2, subfamily c, member 5	protein-coding
diff_RLAGL_Vector_cond1_107	chr1	25887833	25888368	+	16.45560	NA	Intergenic	RLTR9E|LTR|ERVK	-58393	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
diff_RLAGL_Vector_cond1_1479	chr11	7764052	7764264	+	16.45238	NA	Intergenic	Intergenic	-550235	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_4130	chr16	78121732	78122085	+	16.44330	NA	Intergenic	Intergenic	133546	NR_045698	100503619	Mm.387531	NR_045698		E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA
diff_RLAGL_Vector_cond1_661	chr1	168898522	168898860	+	16.44180	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	408048	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA
diff_RLAGL_Vector_cond1_7688	chr5	45292224	45292774	+	16.43542	NA	intron (NR_131933, intron 4 of 5)	intron (NR_131933, intron 4 of 5)	131901	NR_131933	52401	Mm.33854	NR_131933		D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA
diff_RLAGL_Vector_cond1_5643	chr2	100865472	100865872	+	16.43492	NA	Intergenic	Intergenic	-759076	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
diff_RLAGL_Vector_cond1_5904	chr2	147968580	147969009	+	16.43064	NA	Intergenic	Intergenic	76670	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding
diff_RLAGL_Vector_cond1_2699	chr13	58058334	58058581	+	16.41926	NA	intron (NM_001195075, intron 7 of 16)	intron (NM_001195075, intron 7 of 16)	-35257	NR_030544	100124491		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA
diff_RLAGL_Vector_cond1_4055	chr16	58408024	58408554	+	16.40622	NA	promoter-TSS (NM_028523)	promoter-TSS (NM_028523)	-246	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_5896	chr2	146855652	146856080	+	16.38595	NA	promoter-TSS (NM_001033298)	promoter-TSS (NM_001033298)	-23	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding
diff_RLAGL_Vector_cond1_10435	chrX	52819351	52819723	+	16.35859	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	28337	NM_001034059	434778	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding
diff_RLAGL_Vector_cond1_526	chr1	138619035	138619804	+	16.34454	NA	intron (NM_001311148, intron 1 of 7)	CpG	338	NM_001311148	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding
diff_RLAGL_Vector_cond1_3871	chr16	14705374	14705997	+	16.33612	NA	promoter-TSS (NM_011415)	promoter-TSS (NM_011415)	-174	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding
diff_RLAGL_Vector_cond1_8987	chr7	52170190	52170538	+	16.33078	NA	Intergenic	RLTR13C2|LTR|ERVK	-154648	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding
diff_RLAGL_Vector_cond1_779	chr1	187896974	187897382	+	16.32633	NA	intron (NM_001243792, intron 2 of 7)	intron (NM_001243792, intron 2 of 7)	-100649	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding
diff_RLAGL_Vector_cond1_2175	chr12	35685310	35685521	+	16.32047	NA	intron (NR_045050, intron 3 of 4)	intron (NR_045050, intron 3 of 4)	889	NR_045051	71581	Mm.100110	NR_045050		9130015A21Rik	-	RIKEN cDNA 9130015A21 gene	ncRNA
diff_RLAGL_Vector_cond1_10029	chr9	38772800	38773159	+	16.31274	NA	promoter-TSS (NM_146782)	promoter-TSS (NM_146782)	-109	NM_146782	258778	Mm.223209	NM_146782	ENSMUSG00000049926	Olfr921	MOR165-8	olfactory receptor 921	protein-coding
diff_RLAGL_Vector_cond1_2423	chr12	106842002	106842777	+	16.29729	NA	Intergenic	Intergenic	-126065	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA
diff_RLAGL_Vector_cond1_974	chr10	32594841	32595342	+	16.27326	NA	intron (NM_001013411, intron 1 of 6)	RLTR22_Mur|LTR|ERVK	294824	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
diff_RLAGL_Vector_cond1_9476	chr8	36548816	36549485	+	16.25799	NA	Intergenic	Intergenic	59959	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding
diff_RLAGL_Vector_cond1_7215	chr4	112302868	112303195	+	16.23081	NA	Intergenic	RLTR22_Mur|LTR|ERVK	70610	NM_001102474	195564	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding
diff_RLAGL_Vector_cond1_4082	chr16	65663485	65663769	+	16.22089	NA	Intergenic	MTD|LTR|ERVL-MaLR	-100930	NM_026879	68942	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding
diff_RLAGL_Vector_cond1_531	chr1	139454541	139454993	+	16.16543	NA	promoter-TSS (NM_009791)	promoter-TSS (NM_009791)	-6	NM_009791	12316	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	asp (abnormal spindle)-like, microcephaly associated (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5439	chr2	48001946	48002275	+	16.15911	NA	Intergenic	Intergenic	-811999	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
diff_RLAGL_Vector_cond1_372	chr1	94208689	94209221	+	16.15801	NA	Intergenic	Intergenic	-156402	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding
diff_RLAGL_Vector_cond1_9030	chr7	67478034	67478343	+	16.15418	NA	Intergenic	Intergenic	-105330	NM_001033713	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding
diff_RLAGL_Vector_cond1_3255	chr14	84442952	84443658	+	16.15373	NA	promoter-TSS (NM_001013753)	promoter-TSS (NM_001013753)	-258	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
diff_RLAGL_Vector_cond1_5707	chr2	112625142	112625477	+	16.14481	NA	intron (NM_001165935, intron 2 of 4)	intron (NM_001165935, intron 2 of 4)	65627	NM_001165935	74268	Mm.315125	NM_028844		Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding
diff_RLAGL_Vector_cond1_656	chr1	168432281	168432743	+	16.11279	NA	promoter-TSS (NM_001291509)	promoter-TSS (NM_001291509)	-343	NM_183355	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_7155	chr4	100187594	100187857	+	16.11169	NA	intron (NM_001312690, intron 1 of 3)	intron (NM_001312690, intron 1 of 3)	91934	NM_013845	26563	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding
diff_RLAGL_Vector_cond1_10388	chr9	124440181	124440975	+	16.09603	NA	Intergenic	Intergenic	16791	NR_102721	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA
diff_RLAGL_Vector_cond1_6724	chr3	150640099	150640580	+	16.06972	NA	Intergenic	Intergenic	-797543	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
diff_RLAGL_Vector_cond1_1755	chr11	75937484	75937949	+	16.06691	NA	Intergenic	Intergenic	-11825	NM_001291159	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding
diff_RLAGL_Vector_cond1_8668	chr6	133484416	133484618	+	16.05469	NA	Intergenic	L1_Mus3|LINE|L1	-44672	NM_001185040	545884	Mm.482064	NM_001185040		Gm5885	EG545884	predicted gene 5885	protein-coding
diff_RLAGL_Vector_cond1_6573	chr3	124076350	124076643	+	16.02277	NA	Intergenic	Intergenic	-244541	NM_146140	229801	Mm.165810	NM_146140		Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding
diff_RLAGL_Vector_cond1_8627	chr6	127034916	127035119	+	16.02258	NA	Intergenic	Intergenic	19475	NM_010204	14177	Mm.3403	NM_010204		Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding
diff_RLAGL_Vector_cond1_2783	chr13	68581907	68582308	+	15.99439	NA	promoter-TSS (NM_172480)	promoter-TSS (NM_172480)	-3	NM_001308475	210009	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding
diff_RLAGL_Vector_cond1_4580	chr17	72120349	72120611	+	15.98715	NA	intron (NM_007439, intron 4 of 28)	intron (NM_007439, intron 4 of 28)	338533	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding
diff_RLAGL_Vector_cond1_10163	chr9	76257802	76258066	+	15.97894	NA	intron (NM_198962, intron 2 of 7)	intron (NM_198962, intron 2 of 7)	-44277	NM_205844	404194	Mm.213862	NM_205844	ENSMUSG00000059383	Gfral	AY457637|Gral	GDNF family receptor alpha like	protein-coding
diff_RLAGL_Vector_cond1_3249	chr14	81858438	81858989	+	15.95497	NA	Intergenic	Intergenic	1858411	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
diff_RLAGL_Vector_cond1_6309	chr3	55241746	55242023	+	15.95357	NA	promoter-TSS (NM_001195538)	promoter-TSS (NM_001195538)	-642	NM_001111053	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
diff_RLAGL_Vector_cond1_1224	chr10	87049264	87049636	+	15.94178	NA	Intergenic	Intergenic	-8596	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding
diff_RLAGL_Vector_cond1_9348	chr8	5106845	5107240	+	15.93928	NA	Intergenic	Intergenic	-1810	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
diff_RLAGL_Vector_cond1_6764	chr3	157083151	157083631	+	15.90919	NA	intron (NM_001039094, intron 4 of 6)	intron (NM_001039094, intron 4 of 6)	-451006	NM_017381	53861	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_6486	chr3	99560879	99561637	+	15.89618	NA	Intergenic	Intergenic	307498	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding
diff_RLAGL_Vector_cond1_8325	chr6	53819133	53819411	+	15.87044	NA	exon (NM_025817, exon 1 of 1)	exon (NM_025817, exon 1 of 1)	1553	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding
diff_RLAGL_Vector_cond1_965	chr10	31445710	31446093	+	15.85585	NA	promoter-TSS (NM_009413)	promoter-TSS (NM_009413)	20	NM_009413	21987	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding
diff_RLAGL_Vector_cond1_9220	chr7	123448731	123449105	+	15.83034	NA	Intergenic	Intergenic	-13376	NM_007474	11833	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding
diff_RLAGL_Vector_cond1_10018	chr9	37207953	37208372	+	15.79906	NA	promoter-TSS (NM_025464)	promoter-TSS (NM_025464)	-61	NM_025464	66279	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding
diff_RLAGL_Vector_cond1_4003	chr16	49233154	49233449	+	15.79641	NA	Intergenic	Intergenic	175815	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding
diff_RLAGL_Vector_cond1_2568	chr13	16316659	16316930	+	15.78671	NA	Intergenic	Intergenic	302319	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
diff_RLAGL_Vector_cond1_9417	chr8	23731234	23731696	+	15.74669	NA	intron (NM_177086, intron 1 of 6)	intron (NM_177086, intron 1 of 6)	61804	NM_001277239	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding
diff_RLAGL_Vector_cond1_7283	chr4	125419569	125420235	+	15.72551	NA	Intergenic	ID_B1|SINE|B4	-70929	NM_001081097	14807	Mm.40896	NM_001081097	ENSMUSG00000001985	Grik3	9630027E11|GluK3|GluR7-3|Glur-7|Glur7	glutamate receptor, ionotropic, kainate 3	protein-coding
diff_RLAGL_Vector_cond1_5844	chr2	138490726	138491033	+	15.72502	NA	Intergenic	Intergenic	212386	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_555	chr1	146659410	146659946	+	15.72299	NA	intron (NM_001145807, intron 2 of 7)	RLTR22_Mur|LTR|ERVK	161991	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_71	chr1	20477848	20478259	+	15.72159	NA	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	121599	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA
diff_RLAGL_Vector_cond1_3297	chr14	101549080	101549547	+	15.72152	NA	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	59878	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding
diff_RLAGL_Vector_cond1_604	chr1	159686409	159686861	+	15.71340	NA	intron (NM_022312, intron 1 of 22)	intron (NM_022312, intron 1 of 22)	162866	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding
diff_RLAGL_Vector_cond1_5998	chr2	161511930	161512261	+	15.70033	NA	Intergenic	IAPLTR2_Mm|LTR|ERVK	-403009	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
diff_RLAGL_Vector_cond1_4050	chr16	57453060	57453461	+	15.69687	NA	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-95982	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding
diff_RLAGL_Vector_cond1_5191	chr19	47730678	47730914	+	15.69545	NA	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-960	NM_026377	67788	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding
diff_RLAGL_Vector_cond1_8416	chr6	79054661	79055229	+	15.68839	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	22903	NR_040302	100504701	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA
diff_RLAGL_Vector_cond1_2703	chr13	59073649	59073865	+	15.67642	NA	intron (NM_001282961, intron 16 of 17)	intron (NM_001282961, intron 16 of 17)	266060	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding
diff_RLAGL_Vector_cond1_4248	chr17	10840954	10841183	+	15.67580	NA	promoter-TSS (NM_027032)	promoter-TSS (NM_027032)	684	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding
diff_RLAGL_Vector_cond1_1248	chr10	90373508	90373760	+	15.67160	NA	intron (NM_001128086, intron 12 of 24)	MTEb|LTR|ERVL-MaLR	-202093	NM_001177397	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_3801	chr15	98425272	98425570	+	15.66715	NA	Intergenic	Intergenic	-12049	NM_146457	258449	Mm.324601	NM_146457	ENSMUSG00000063780	Olfr282	MOR160-2	olfactory receptor 282	protein-coding
diff_RLAGL_Vector_cond1_2664	chr13	48227707	48228040	+	15.66460	NA	intron (NR_102303, intron 1 of 2)	CpG	-33554	NM_031166	15904	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding
diff_RLAGL_Vector_cond1_982	chr10	34019423	34019954	+	15.66237	NA	promoter-TSS (NM_025614)	promoter-TSS (NM_025614)	-72	NM_025614	66521	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4106	chr16	72830490	72830894	+	15.57860	NA	intron (NM_019413, intron 2 of 28)	AT_rich|Low_complexity|Low_complexity	167543	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4297	chr17	20071729	20072046	+	15.57853	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-23682	NM_001104566	22313	Mm.379039	NM_001104566	ENSMUSG00000090315	Vmn2r104	V2r7	vomeronasal 2, receptor 104	protein-coding
diff_RLAGL_Vector_cond1_1190	chr10	82354058	82354724	+	15.56775	NA	Intergenic	CpG	-113116	NM_001105557	237411		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding
diff_RLAGL_Vector_cond1_524	chr1	138575706	138575998	+	15.56068	NA	intron (NM_001311148, intron 1 of 7)	intron (NM_001311148, intron 1 of 7)	43905	NM_001311148	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding
diff_RLAGL_Vector_cond1_2064	chr12	9883418	9883663	+	15.55219	NA	Intergenic	Intergenic	309098	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1	chr1	3514809	3515523	+	15.55139	NA	intron (NM_001011874, intron 1 of 2)	MTE2b|LTR|ERVL-MaLR	156332	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X Kell blood group precursor related family member 4	protein-coding
diff_RLAGL_Vector_cond1_9130	chr7	92896988	92897329	+	15.52347	NA	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	21905	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding
diff_RLAGL_Vector_cond1_3662	chr15	67176663	67177146	+	15.51927	NA	promoter-TSS (NM_009177)	promoter-TSS (NM_009177)	-22	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_3000	chr14	11160783	11161037	+	15.51435	NA	intron (NM_001308285, intron 1 of 9)	intron (NM_001308285, intron 1 of 9)	1125	NM_001308285	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding
diff_RLAGL_Vector_cond1_4300	chr17	20944985	20945859	+	15.49842	NA	promoter-TSS (NM_016891)	promoter-TSS (NM_016891)	-32	NM_016891	51792	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding
diff_RLAGL_Vector_cond1_10533	chrX	121764476	121764844	+	15.49438	NA	Intergenic	RLTR22_Mur|LTR|ERVK	632725	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding
diff_RLAGL_Vector_cond1_6195	chr3	20141772	20142163	+	15.47941	NA	intron (NM_013755, intron 4 of 6)	intron (NM_013755, intron 4 of 6)	13149	NM_013755	27357	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|Gyg1	glycogenin	protein-coding
diff_RLAGL_Vector_cond1_8345	chr6	57260956	57261370	+	15.47692	NA	Intergenic	Lx7|LINE|L1	3014	NM_053236	113863	Mm.377160	NM_053236	ENSMUSG00000058731	Vmn1r15	V1rc6	vomeronasal 1 receptor 15	protein-coding
diff_RLAGL_Vector_cond1_822	chr1	193510145	193510817	+	15.47329	NA	Intergenic	Intergenic	-2951	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA
diff_RLAGL_Vector_cond1_7776	chr5	72503789	72504063	+	15.43654	NA	exon (NM_016869, exon 1 of 22)	exon (NM_016869, exon 1 of 22)	282	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding
diff_RLAGL_Vector_cond1_10062	chr9	46480150	46480381	+	15.43570	NA	Intergenic	Intergenic	-160279	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding
diff_RLAGL_Vector_cond1_7057	chr4	74764296	74764958	+	15.40738	NA	Intergenic	MIRb|SINE|MIR	512748	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding
diff_RLAGL_Vector_cond1_6920	chr4	34424203	34424526	+	15.40130	NA	Intergenic	Intergenic	-126251	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding
diff_RLAGL_Vector_cond1_4291	chr17	17838021	17838510	+	15.39275	NA	intron (NM_001162909, intron 7 of 8)	CpG	7290	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding
diff_RLAGL_Vector_cond1_1367	chr10	118141457	118142073	+	15.38121	NA	promoter-TSS (NM_010785)	promoter-TSS (NM_010785)	-22	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding
diff_RLAGL_Vector_cond1_6562	chr3	120572134	120572496	+	15.37758	NA	intron (NR_130170, intron 12 of 18)	L2b|LINE|L2	314417	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
diff_RLAGL_Vector_cond1_6180	chr3	16330807	16331224	+	15.35532	NA	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	147832	NR_027375	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding
diff_RLAGL_Vector_cond1_8551	chr6	112553600	112553833	+	15.34622	NA	Intergenic	Intergenic	-63908	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding
diff_RLAGL_Vector_cond1_865	chr10	8114868	8115138	+	15.32986	NA	Intergenic	RLTR9D|LTR|ERVK	-158880	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_1642	chr11	50841417	50841702	+	15.32369	NA	promoter-TSS (NM_173387)	promoter-TSS (NM_173387)	-7	NM_173387	214779	Mm.191846	NM_173387	ENSMUSG00000044296	Zfp879	Znf879	zinc finger protein 879	protein-coding
diff_RLAGL_Vector_cond1_2972	chr13	118658426	118659083	+	15.32224	NA	promoter-TSS (NR_131153)	promoter-TSS (NR_131153)	-11	NR_131153	100038690	Mm.384983	NR_131153		Gm10732	ENSMUSG00000074638	predicted gene 10732	ncRNA
diff_RLAGL_Vector_cond1_3766	chr15	91672949	91673342	+	15.30786	NA	promoter-TSS (NM_025730)	promoter-TSS (NM_025730)	-79	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding
diff_RLAGL_Vector_cond1_3557	chr15	44449924	44450124	+	15.30779	NA	Intergenic	MTD|LTR|ERVL-MaLR	-7529	NM_138674	192190	Mm.211494	NM_138674	ENSMUSG00000038725	Pkhd1l1	AB055648|PKHDL1	polycystic kidney and hepatic disease 1-like 1	protein-coding
diff_RLAGL_Vector_cond1_7871	chr5	102844393	102844631	+	15.29922	NA	intron (NM_001286468, intron 2 of 7)	intron (NM_001286468, intron 2 of 7)	75702	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
diff_RLAGL_Vector_cond1_2282	chr12	67143629	67143910	+	15.29799	NA	intron (NM_207010, intron 1 of 15)	RLTR22_Mur|LTR|ERVK	78780	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
diff_RLAGL_Vector_cond1_3377	chr14	120755403	120756070	+	15.29510	NA	Intergenic	L2a|LINE|L2	-155458	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding
diff_RLAGL_Vector_cond1_300	chr1	81951589	81951932	+	15.28481	NA	Intergenic	Intergenic	-180156	NR_105762	102466629		NR_105762	ENSMUSG00000098797	Mir6344	Gm27840|mmu-mir-6344	microRNA 6344	ncRNA
diff_RLAGL_Vector_cond1_5613	chr2	87817090	87817471	+	15.27780	NA	Intergenic	Intergenic	7458	NM_146320	258317	Mm.377433	NM_146320	ENSMUSG00000068814	Olfr1145	MOR264-19	olfactory receptor 1145	protein-coding
diff_RLAGL_Vector_cond1_793	chr1	190125413	190125616	+	15.27212	NA	intron (NM_008937, intron 4 of 4)	intron (NM_008937, intron 4 of 4)	45166	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_3973	chr16	42875041	42875892	+	15.25499	NA	non-coding (NR_040521, exon 1 of 4)	non-coding (NR_040521, exon 1 of 4)	121	NR_040521	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA
diff_RLAGL_Vector_cond1_5737	chr2	118544279	118544830	+	15.25153	NA	intron (NM_001311140, intron 3 of 3)	intron (NM_001311140, intron 3 of 3)	3006	NM_001311140	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding
diff_RLAGL_Vector_cond1_10231	chr9	94446477	94446677	+	15.22158	NA	Intergenic	Intergenic	91504	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
diff_RLAGL_Vector_cond1_2120	chr12	21784091	21784945	+	15.22104	NA	Intergenic	CpG	-367082	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_3668	chr15	67780870	67781269	+	15.21870	NA	Intergenic	Intergenic	477787	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
diff_RLAGL_Vector_cond1_8690	chr6	135559497	135559961	+	15.21660	NA	Intergenic	Intergenic	-99184	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA
diff_RLAGL_Vector_cond1_180	chr1	52233101	52233666	+	15.21145	NA	promoter-TSS (NM_001081081)	promoter-TSS (NM_001081081)	-151	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding
diff_RLAGL_Vector_cond1_4247	chr17	10840029	10840718	+	15.19806	NA	promoter-TSS (NM_027032)	promoter-TSS (NM_027032)	-11	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding
diff_RLAGL_Vector_cond1_4555	chr17	66817380	66817628	+	15.18737	NA	intron (NM_008984, intron 15 of 30)	intron (NM_008984, intron 15 of 30)	208731	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA
diff_RLAGL_Vector_cond1_1049	chr10	53379409	53380046	+	15.18681	NA	5' UTR (NM_001204983, exon 1 of 13)	5' UTR (NM_001204983, exon 1 of 13)	124	NM_001204983	100038725	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	ENSMUSG00000038594|Gm9766	centrosomal protein 85-like	protein-coding
diff_RLAGL_Vector_cond1_7055	chr4	74013383	74014034	+	15.17983	NA	5' UTR (NM_001163732, exon 1 of 15)	5' UTR (NM_001163732, exon 1 of 15)	105	NM_001163732	242506	Mm.221597	NM_172869	ENSMUSG00000049122	Frmd3	4.1O|9430066I12Rik|EPB41L4O|P410	FERM domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4992	chr18	79257721	79258038	+	15.17253	NA	Intergenic	Intergenic	-148488	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_6241	chr3	34371496	34371716	+	15.17130	NA	Intergenic	Intergenic	-188775	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA
diff_RLAGL_Vector_cond1_8252	chr6	33060244	33060524	+	15.16872	NA	promoter-TSS (NM_025336)	promoter-TSS (NM_025336)	-232	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_3786	chr15	94951251	94951952	+	15.15513	NA	intron (NM_178789, intron 5 of 7)	intron (NM_178789, intron 5 of 7)	197717	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
diff_RLAGL_Vector_cond1_6035	chr2	168154480	168154784	+	15.14194	NA	promoter-TSS (NR_040327)	promoter-TSS (NR_040327)	-119	NR_040327	77017	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA
diff_RLAGL_Vector_cond1_890	chr10	13207933	13208202	+	15.13567	NA	3' UTR (NM_001195096, exon 13 of 13)	3' UTR (NM_001195096, exon 13 of 13)	-14930	NM_181470	353258	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1608	chr11	36221298	36221586	+	15.13351	NA	exon (NM_011856, exon 6 of 29)	exon (NM_011856, exon 6 of 29)	-241353	NM_170779	211652	Mm.31267	NM_170779		Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9988	chr9	30849535	30849778	+	15.13108	NA	Intergenic	Intergenic	72796	NM_001024139	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding
diff_RLAGL_Vector_cond1_9790	chr8	114418437	114418739	+	15.10758	NA	intron (NM_001007223, intron 1 of 2)	intron (NM_001007223, intron 1 of 2)	554	NM_001007223	403395	Mm.81117	NM_001007223		Clec3a	1110019O10Rik|Clecsf1|Gm796	C-type lectin domain family 3, member a	protein-coding
diff_RLAGL_Vector_cond1_8805	chr7	6362369	6363410	+	15.09771	NA	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-419	NM_001025163	330463	Mm.136456	NM_177888		Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding
diff_RLAGL_Vector_cond1_4232	chr17	4196742	4197370	+	15.09475	NA	Intergenic	Intergenic	-74954	NR_045462	78043	Mm.398313	NR_045462		4930548J01Rik	1700113K09Rik	RIKEN cDNA 4930548J01 gene	ncRNA
diff_RLAGL_Vector_cond1_4644	chr17	84000226	84000464	+	15.09414	NA	intron (NR_130994, intron 1 of 1)	intron (NR_130994, intron 1 of 1)	1793	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA
diff_RLAGL_Vector_cond1_8698	chr6	137063603	137063928	+	15.09308	NA	intron (NM_001164214, intron 2 of 3)	intron (NM_001164214, intron 2 of 3)	105953	NM_001164214	232441	Mm.46233	NM_181988	ENSMUSG00000030222	Rerg	-	RAS-like, estrogen-regulated, growth-inhibitor	protein-coding
diff_RLAGL_Vector_cond1_8381	chr6	66535057	66535749	+	15.09254	NA	promoter-TSS (NM_019499)	promoter-TSS (NM_019499)	-65	NM_019499	56150	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding
diff_RLAGL_Vector_cond1_7514	chr5	4757876	4758259	+	15.08919	NA	5' UTR (NM_021457, exon 1 of 1)	5' UTR (NM_021457, exon 1 of 1)	149	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3368	chr14	119007224	119007789	+	15.07416	NA	intron (NM_001081252, intron 33 of 38)	ORR1D2|LTR|ERVL-MaLR	69574	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ (Hsp40) homolog, subfamily C, member 3	protein-coding
diff_RLAGL_Vector_cond1_3398	chr14	123110509	123110993	+	15.07213	NA	Intergenic	Intergenic	-57752	NR_045145	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
diff_RLAGL_Vector_cond1_601	chr1	157726018	157726228	+	15.06901	NA	Intergenic	RMER1C|Other|Other	199953	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_4989	chr18	79068463	79069024	+	15.04746	NA	intron (NM_053099, intron 2 of 5)	intron (NM_053099, intron 2 of 5)	40648	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9883	chr9	4375977	4376603	+	15.02689	NA	Intergenic	Intergenic	-7247	NM_145609	78100	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding
diff_RLAGL_Vector_cond1_647	chr1	167000775	167001093	+	15.02320	NA	promoter-TSS (NM_001160262)	promoter-TSS (NM_001160262)	-483	NM_175461	226610	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding
diff_RLAGL_Vector_cond1_1447	chr10	129313584	129313845	+	15.01989	NA	Intergenic	RMER12C|LTR|ERVK	-7911	NM_146284	258281	Mm.377412	NM_146284	ENSMUSG00000049573	Olfr780	MOR114-12	olfactory receptor 780	protein-coding
diff_RLAGL_Vector_cond1_6343	chr3	61363578	61364011	+	15.00810	NA	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	-713	NM_028712	74012	Mm.422674	NM_028712		Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_9786	chr8	113634843	113635889	+	15.00262	NA	promoter-TSS (NM_173015)	promoter-TSS (NM_173015)	-220	NM_001048143	270096	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog b (yeast)	protein-coding
diff_RLAGL_Vector_cond1_2254	chr12	56674213	56674547	+	14.99794	NA	Intergenic	Intergenic	-21091	NM_011041	18511	Mm.5035	NM_011041	ENSMUSG00000001497	Pax9	Pax-9	paired box 9	protein-coding
diff_RLAGL_Vector_cond1_2344	chr12	85695946	85696241	+	14.98351	NA	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	9373	NM_016767	53314	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding
diff_RLAGL_Vector_cond1_7050	chr4	72312249	72312686	+	14.98129	NA	Intergenic	Intergenic	111223	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA
diff_RLAGL_Vector_cond1_3635	chr15	62114811	62115165	+	14.95815	NA	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	75731	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA
diff_RLAGL_Vector_cond1_4169	chr16	88166620	88166943	+	14.95791	NA	intron (NM_010348, intron 1 of 15)	RLTR22_Mur|LTR|ERVK	123477	NM_146072	14805	Mm.5134	NM_010348		Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding
diff_RLAGL_Vector_cond1_9132	chr7	95253853	95254243	+	14.94957	NA	Intergenic	Intergenic	-917196	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
diff_RLAGL_Vector_cond1_958	chr10	30683535	30683772	+	14.94784	NA	intron (NM_172495, intron 10 of 15)	Lx8|LINE|L1	-27786	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding
diff_RLAGL_Vector_cond1_1188	chr10	82127790	82128393	+	14.93790	NA	promoter-TSS (NM_001163064)	promoter-TSS (NM_001163064)	78	NM_001163064	216177	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding
diff_RLAGL_Vector_cond1_3412	chr15	3982185	3982520	+	14.92996	NA	3' UTR (NM_145930, exon 6 of 6)	3' UTR (NM_145930, exon 6 of 6)	-2779	NM_134099	106052	Mm.234191	NM_134099		Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding
diff_RLAGL_Vector_cond1_5307	chr2	16983599	16984037	+	14.92896	NA	intron (NR_040632, intron 2 of 3)	RLTR22_Mur|LTR|ERVK	29908	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA
diff_RLAGL_Vector_cond1_6716	chr3	149196766	149197119	+	14.91986	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-77795	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
diff_RLAGL_Vector_cond1_10141	chr9	67759203	67759519	+	14.89192	NA	promoter-TSS (NM_001081314)	promoter-TSS (NM_001081314)	-76	NM_001081314	75697	Mm.105353	NM_001081314	ENSMUSG00000091956	C2cd4b	3300001A09Rik|Fam148b	C2 calcium-dependent domain containing 4B	protein-coding
diff_RLAGL_Vector_cond1_4145	chr16	81745375	81745811	+	14.89147	NA	Intergenic	RLTR22_Mus|LTR|ERVK	544896	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_8788	chr7	3113754	3114023	+	14.84081	NA	Intergenic	Intergenic	-14258	NR_001583	73949	Mm.55687	NR_001583	ENSMUSG00000107956	Speer9-ps1	4930415A14Rik|SPEER-9|Speer9-ps	spermatogenesis associated glutamate (E)-rich protein 9, pseudogene 1	pseudo
diff_RLAGL_Vector_cond1_722	chr1	178600813	178601428	+	14.83936	NA	intron (NM_001161665, intron 2 of 14)	intron (NM_001161665, intron 2 of 14)	71995	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding
diff_RLAGL_Vector_cond1_1000	chr10	38849195	38849440	+	14.81929	NA	Intergenic	Intergenic	-27538	NM_001177783	215919	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding
diff_RLAGL_Vector_cond1_10179	chr9	81863544	81863985	+	14.80979	NA	promoter-TSS (NM_175213)	promoter-TSS (NM_175213)	20	NM_175213	75033	Mm.335329	NM_175213	ENSMUSG00000043289	Mei4	4930486G11Rik	meiosis-specific, MEI4 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8413	chr6	78696256	78696637	+	14.79363	NA	Intergenic	RLTR19|LTR|ERVK	-227572	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515	regenerating islet-derived 3 gamma	protein-coding
diff_RLAGL_Vector_cond1_317	chr1	84696195	84696415	+	14.78835	NA	promoter-TSS (NM_152915)	promoter-TSS (NM_152915)	-84	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding
diff_RLAGL_Vector_cond1_9396	chr8	18564667	18564897	+	14.77752	NA	Intergenic	Intergenic	-30391	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding
diff_RLAGL_Vector_cond1_6792	chr4	4077438	4077690	+	14.77143	NA	promoter-TSS (NM_001080710)	promoter-TSS (NM_001080710)	-50	NM_001080710	242286	Mm.298546	NM_001080710		Sdr16c6	4833413O15Rik|Gm423	short chain dehydrogenase/reductase family 16C, member 6	protein-coding
diff_RLAGL_Vector_cond1_3549	chr15	43476909	43477318	+	14.77036	NA	promoter-TSS (NM_025736)	promoter-TSS (NM_025736)	-77	NR_046064	100038728	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	ENSMUSG00000072592	predicted gene 10373	ncRNA
diff_RLAGL_Vector_cond1_3254	chr14	83002513	83002995	+	14.77013	NA	Intergenic	L1VL4|LINE|L1	-1440809	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
diff_RLAGL_Vector_cond1_3767	chr15	91889388	91889668	+	14.76831	NA	intron (NM_207243, intron 18 of 43)	RLTR22_Mur|LTR|ERVK	51200	NM_198927	223809	Mm.486225	NM_198927	ENSMUSG00000047295	Smgc	2310010P21Rik|DXImx49e|Muc19|Muc19/Smgc|Sfc21	submandibular gland protein C	protein-coding
diff_RLAGL_Vector_cond1_1307	chr10	106941432	106941735	+	14.76793	NA	intron (NM_001142804, intron 13 of 15)	intron (NM_001142804, intron 13 of 15)	182081	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding
diff_RLAGL_Vector_cond1_4265	chr17	13446348	13446761	+	14.76294	NA	Intergenic	L1MA6|LINE|L1	-74902	NR_030763	272667	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo
diff_RLAGL_Vector_cond1_7314	chr4	130175240	130175747	+	14.74299	NA	promoter-TSS (NM_023476)	promoter-TSS (NM_023476)	-371	NM_023476	94242	Mm.15801	NM_023476	ENSMUSG00000028776	Tinagl1	1110021J17Rik|AZ-1|AZ1|Arg1|Lcn7|TARP|Tinagl	tubulointerstitial nephritis antigen-like 1	protein-coding
diff_RLAGL_Vector_cond1_3520	chr15	33101019	33101305	+	14.73379	NA	intron (NM_176073, intron 1 of 7)	MMERVK9E_I-int|LTR|ERVK	18033	NM_018755	54381	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding
diff_RLAGL_Vector_cond1_5317	chr2	19553830	19554547	+	14.73110	NA	promoter-TSS (NM_027600)	promoter-TSS (NM_027600)	-278	NM_027600	70909	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding
diff_RLAGL_Vector_cond1_4714	chr18	4634694	4635031	+	14.72896	NA	promoter-TSS (NM_001081963)	promoter-TSS (NM_001081963)	-67	NM_001081963	240185	Mm.33179	NM_001081963	ENSMUSG00000033960	9430020K01Rik	1110056P05Rik|Gm328|Jcad|mKIAA1462	RIKEN cDNA 9430020K01 gene	protein-coding
diff_RLAGL_Vector_cond1_5901	chr2	147717443	147717952	+	14.72706	NA	TTS (NR_046014)	TTS (NR_046014)	7004	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA
diff_RLAGL_Vector_cond1_76	chr1	20951306	20951727	+	14.71969	NA	promoter-TSS (NM_027974)	promoter-TSS (NM_027974)	-110	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding
diff_RLAGL_Vector_cond1_5519	chr2	63280975	63281323	+	14.66288	NA	Intergenic	Intergenic	-96862	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
diff_RLAGL_Vector_cond1_7125	chr4	91376388	91376724	+	14.63381	NA	promoter-TSS (NM_001177883)	promoter-TSS (NM_001177883)	-60	NM_001177883	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding
diff_RLAGL_Vector_cond1_3968	chr16	40399536	40399807	+	14.63215	NA	Intergenic	Intergenic	-1133671	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
diff_RLAGL_Vector_cond1_7300	chr4	128609985	128610323	+	14.62956	NA	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-56	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding
diff_RLAGL_Vector_cond1_3661	chr15	67116181	67116436	+	14.62270	NA	intron (NM_009177, intron 3 of 8)	intron (NM_009177, intron 3 of 8)	60574	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_284	chr1	75521268	75521680	+	14.61796	NA	promoter-TSS (NM_027886)	promoter-TSS (NM_027886)	-55	NM_027886	71728	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_2409	chr12	103969604	103970090	+	14.61624	NA	Intergenic	Intergenic	-12950	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding
diff_RLAGL_Vector_cond1_1523	chr11	17953254	17954098	+	14.61608	NA	promoter-TSS (NR_131915)	promoter-TSS (NR_131915)	199	NM_026576	68145	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding
diff_RLAGL_Vector_cond1_6116	chr2	178888545	178889127	+	14.61127	NA	Intergenic	MER58A|DNA|hAT-Charlie	458321	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding
diff_RLAGL_Vector_cond1_10226	chr9	92826720	92827068	+	14.61126	NA	Intergenic	RLTR22_Mur|LTR|ERVK	108178	NR_040770	331003	Mm.50805	NR_040770	ENSMUSG00000101734	4933400C23Rik	4933400C23	RIKEN cDNA 4933400C23 gene	ncRNA
diff_RLAGL_Vector_cond1_796	chr1	190448323	190448696	+	14.59682	NA	Intergenic	Intergenic	-277829	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_4440	chr17	45973329	45973560	+	14.59554	NA	Intergenic	Intergenic	51719	NM_001110268	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding
diff_RLAGL_Vector_cond1_1047	chr10	53165045	53165368	+	14.58546	NA	Intergenic	Intergenic	-115064	NR_038015	100502820	Mm.55827	NR_038015		Gm19395	-	predicted gene, 19395	ncRNA
diff_RLAGL_Vector_cond1_1708	chr11	65729672	65729932	+	14.58153	NA	intron (NM_001316369, intron 2 of 9)	RMER15-int|LTR|ERVL	5030	NR_030417	791070		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA
diff_RLAGL_Vector_cond1_7145	chr4	97629059	97629691	+	14.58002	NA	intron (NM_001122952, intron 1 of 10)	L2a|LINE|L2	-44784	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA
diff_RLAGL_Vector_cond1_1705	chr11	64726368	64726583	+	14.56241	NA	Intergenic	MTD|LTR|ERVL-MaLR	-252560	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC homolog 2 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_9878	chr9	3531531	3531732	+	14.54987	NA	promoter-TSS (NM_001033322)	promoter-TSS (NM_001033322)	-718	NM_001033322	234889	Mm.91240	NM_001033322		Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding
diff_RLAGL_Vector_cond1_9919	chr9	14053783	14054171	+	14.54550	NA	Intergenic	Intergenic	-222324	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding
diff_RLAGL_Vector_cond1_768	chr1	186478355	186478917	+	14.52977	NA	Intergenic	Intergenic	80045	NR_131124	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA
diff_RLAGL_Vector_cond1_1744	chr11	74554729	74554931	+	14.52340	NA	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	35328	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding
diff_RLAGL_Vector_cond1_9906	chr9	8900987	8901926	+	14.51348	NA	exon (NM_008829, exon 1 of 8)	exon (NM_008829, exon 1 of 8)	1623	NM_008829	18667	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|ENSMUSG00000074510|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding
diff_RLAGL_Vector_cond1_8661	chr6	132629637	132630013	+	14.50222	NA	Intergenic	Intergenic	-2314	NM_001142969	381819	Mm.156682	NM_001142969	ENSMUSG00000067541	A630073D07Rik	Gm1688	RIKEN cDNA A630073D07 gene	protein-coding
diff_RLAGL_Vector_cond1_9656	chr8	80057495	80057765	+	14.49840	NA	5' UTR (NM_020259, exon 1 of 13)	5' UTR (NM_020259, exon 1 of 13)	378	NM_020259	15245	Mm.254493	NM_020259		Hhip	Hhip1	Hedgehog-interacting protein	protein-coding
diff_RLAGL_Vector_cond1_7009	chr4	61855839	61856265	+	14.48793	NA	Intergenic	RLTR1F_Mm|LTR|ERVK	-20872	NM_008649	17844	Mm.445286	NM_008649	ENSMUSG00000058523	Mup5	Mup18	major urinary protein 5	protein-coding
diff_RLAGL_Vector_cond1_7226	chr4	114637098	114637477	+	14.47452	NA	Intergenic	Intergenic	-184433	NR_033617	433746	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	OTTMUSG00000008584	predicted gene 12830	ncRNA
diff_RLAGL_Vector_cond1_794	chr1	190170186	190171087	+	14.46114	NA	promoter-TSS (NM_008937)	promoter-TSS (NM_008937)	44	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_7219	chr4	113302113	113302376	+	14.45916	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-15271	NM_001103199	230622	Mm.291107	NM_001103199	ENSMUSG00000087194	Skint6	OTTMUSG00000008519	selection and upkeep of intraepithelial T cells 6	protein-coding
diff_RLAGL_Vector_cond1_4690	chr17	91079145	91079419	+	14.45068	NA	intron (NM_020252, intron 2 of 22)	intron (NM_020252, intron 2 of 22)	13520	NM_020252	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
diff_RLAGL_Vector_cond1_5736	chr2	118540905	118541106	+	14.43577	NA	intron (NM_001311140, intron 3 of 3)	intron (NM_001311140, intron 3 of 3)	6555	NM_001311140	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding
diff_RLAGL_Vector_cond1_9221	chr7	124372747	124373004	+	14.43568	NA	intron (NM_001252072, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	336060	NR_045907	73076	Mm.417827	NR_045907	ENSMUSG00000086254	3100003L05Rik	-	RIKEN cDNA 3100003L05 gene	ncRNA
diff_RLAGL_Vector_cond1_1048	chr10	53209808	53210237	+	14.42559	NA	Intergenic	ERVB5_1-LTR_MM|LTR|ERVK	-70248	NR_038015	100502820	Mm.55827	NR_038015		Gm19395	-	predicted gene, 19395	ncRNA
diff_RLAGL_Vector_cond1_1499	chr11	11012762	11013486	+	14.38704	NA	Intergenic	Intergenic	-100892	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_2995	chr14	10134009	10134278	+	14.38677	NA	intron (NM_001308286, intron 2 of 6)	intron (NM_001308286, intron 2 of 6)	250048	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo
diff_RLAGL_Vector_cond1_7846	chr5	98016830	98017251	+	14.38560	NA	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	13922	NM_133738	71914	Mm.24842	NM_133738		Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding
diff_RLAGL_Vector_cond1_2078	chr12	12509136	12509636	+	14.36449	NA	Intergenic	Intergenic	-116911	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
diff_RLAGL_Vector_cond1_7712	chr5	50454294	50454780	+	14.36296	NA	Intergenic	Intergenic	201775	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
diff_RLAGL_Vector_cond1_2546	chr13	12258029	12258385	+	14.35628	NA	promoter-TSS (NM_001081128)	promoter-TSS (NM_001081128)	-94	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding
diff_RLAGL_Vector_cond1_418	chr1	111864492	111865190	+	14.35163	NA	promoter-TSS (NM_001081316)	promoter-TSS (NM_001081316)	77	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
diff_RLAGL_Vector_cond1_10556	chrX	136938078	136938408	+	14.34358	NA	Intergenic	Intergenic	10918	NM_027067	69389	Mm.302721	NM_027067	ENSMUSG00000048155	H2bfm	1700014N06Rik|H2bfw|H2bl2	H2B histone family, member M	protein-coding
diff_RLAGL_Vector_cond1_7901	chr5	109332044	109332313	+	14.32707	NA	intron (NM_001104627, intron 1 of 5)	RLTR22_Mus|LTR|ERVK	1797	NM_001104627	384220	Mm.469880	NM_001104627	ENSMUSG00000092080	Vmn2r16	EG384220	vomeronasal 2, receptor 16	protein-coding
diff_RLAGL_Vector_cond1_5823	chr2	136834705	136835035	+	14.32269	NA	Intergenic	MER92C|LTR|ERV1	-56348	NM_028201	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_4994	chr18	80004990	80005281	+	14.31460	NA	Intergenic	Intergenic	-41760	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding
diff_RLAGL_Vector_cond1_8795	chr7	4478394	4478682	+	14.30544	NA	intron (NM_026146, intron 18 of 19)	intron (NM_026146, intron 18 of 19)	-7654	NR_028416	320749	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA
diff_RLAGL_Vector_cond1_2184	chr12	36843012	36843247	+	14.29387	NA	Intergenic	Intergenic	26924	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA
diff_RLAGL_Vector_cond1_8755	chr6	144620978	144621437	+	14.28545	NA	Intergenic	Intergenic	-51661	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA
diff_RLAGL_Vector_cond1_5030	chr18	87359682	87360068	+	14.28123	NA	Intergenic	Intergenic	647810	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding
diff_RLAGL_Vector_cond1_9552	chr8	56384296	56384519	+	14.26828	NA	Intergenic	RLTR13B3|LTR|ERVK	89855	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding
diff_RLAGL_Vector_cond1_3410	chr15	3601753	3602122	+	14.26788	NA	Intergenic	Intergenic	-18585	NM_001048178	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding
diff_RLAGL_Vector_cond1_8399	chr6	71661409	71661768	+	14.25180	NA	Intergenic	Intergenic	-28671	NM_001038695	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding
diff_RLAGL_Vector_cond1_9981	chr9	28552537	28552899	+	14.23735	NA	intron (NM_177906, intron 2 of 7)	intron (NM_177906, intron 2 of 7)	761449	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding
diff_RLAGL_Vector_cond1_9035	chr7	68129006	68129440	+	14.23588	NA	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	135010	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding
diff_RLAGL_Vector_cond1_2090	chr12	14151938	14152366	+	14.22995	NA	promoter-TSS (NM_029007)	promoter-TSS (NM_029007)	-114	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding
diff_RLAGL_Vector_cond1_3438	chr15	7263344	7263707	+	14.22742	NA	intron (NM_178748, intron 6 of 21)	MTC|LTR|ERVL-MaLR	122983	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding
diff_RLAGL_Vector_cond1_1614	chr11	39954495	39954784	+	14.21656	NA	Intergenic	Intergenic	-564414	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
diff_RLAGL_Vector_cond1_1286	chr10	102616027	102616583	+	14.21410	NA	Intergenic	MTEb|LTR|ERVL-MaLR	104083	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding
diff_RLAGL_Vector_cond1_9829	chr8	120997243	120997525	+	14.21005	NA	Intergenic	Intergenic	85726	NR_130109	68790	Mm.246916	NR_045471	ENSMUSG00000097336	Fendrr	1110050K14Rik|LL66|linc-Foxf1a|lincFoxf1	Foxf1 adjacent non-coding developmental regulatory RNA	ncRNA
diff_RLAGL_Vector_cond1_4083	chr16	65814824	65815895	+	14.20806	NA	promoter-TSS (NM_028572)	promoter-TSS (NM_028572)	-274	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7882	chr5	104131617	104131833	+	14.20731	NA	Intergenic	Intergenic	-17637	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding
diff_RLAGL_Vector_cond1_2776	chr13	67500401	67500695	+	14.20413	NA	promoter-TSS (NM_001007575)	promoter-TSS (NM_001007575)	-26	NM_001007575	238693	Mm.478914	NM_001007575	ENSMUSG00000071291	Zfp58	A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817	zinc finger protein 58	protein-coding
diff_RLAGL_Vector_cond1_6896	chr4	28812809	28813271	+	14.19737	NA	promoter-TSS (NM_001122889)	promoter-TSS (NM_001122889)	-91	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
diff_RLAGL_Vector_cond1_4484	chr17	53568278	53568508	+	14.18761	NA	intron (NM_020005, intron 1 of 17)	intron (NM_020005, intron 1 of 17)	1422	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding
diff_RLAGL_Vector_cond1_10310	chr9	114240603	114240851	+	14.18246	NA	Intergenic	Intergenic	-89408	NM_007535	12046	Mm.378887	NM_007535	ENSMUSG00000053820	Bcl2a1c	A1-c	B cell leukemia/lymphoma 2 related protein A1c	protein-coding
diff_RLAGL_Vector_cond1_3367	chr14	118937590	118938072	+	14.17823	NA	promoter-TSS (NM_008929)	promoter-TSS (NM_008929)	-101	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ (Hsp40) homolog, subfamily C, member 3	protein-coding
diff_RLAGL_Vector_cond1_1209	chr10	85386550	85387160	+	14.16009	NA	promoter-TSS (NM_028709)	promoter-TSS (NM_028709)	41	NM_028709	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding
diff_RLAGL_Vector_cond1_2326	chr12	79663524	79663812	+	14.15876	NA	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	261065	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA
diff_RLAGL_Vector_cond1_2906	chr13	105132502	105132780	+	14.15687	NA	Intergenic	MTD|LTR|ERVL-MaLR	50519	NM_025751	66763	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding
diff_RLAGL_Vector_cond1_7	chr1	4775558	4775933	+	14.15041	NA	3' UTR (NM_001177658, exon 5 of 5)	3' UTR (NM_001177658, exon 5 of 5)	9981	NR_033530	27395	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding
diff_RLAGL_Vector_cond1_5687	chr2	109280505	109280925	+	14.14076	NA	promoter-TSS (NM_139303)	promoter-TSS (NM_139303)	-23	NM_139303	228421	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik	kinesin family member 18A	protein-coding
diff_RLAGL_Vector_cond1_3371	chr14	120137826	120138098	+	14.13572	NA	Intergenic	Intergenic	-95527	NM_001001490	239283	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding
diff_RLAGL_Vector_cond1_798	chr1	190609788	190610065	+	14.13349	NA	Intergenic	Intergenic	301844	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_6449	chr3	90626354	90626566	+	14.11803	NA	Intergenic	Intergenic	13566	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding
diff_RLAGL_Vector_cond1_6870	chr4	22746662	22747239	+	14.10290	NA	Intergenic	Intergenic	256402	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
diff_RLAGL_Vector_cond1_912	chr10	18508649	18508855	+	14.10030	NA	intron (NM_001163592, intron 3 of 7)	intron (NM_001163592, intron 3 of 7)	37324	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_5228	chr19	59844200	59844604	+	14.09362	NA	Intergenic	Intergenic	98962	NM_001033172	74998	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding
diff_RLAGL_Vector_cond1_5712	chr2	113774201	113774468	+	14.08964	NA	Intergenic	Intergenic	-15686	NM_011824	23892	Mm.166318	NM_011824		Grem1	Cktsf1b1|Drm|Grem|ld	gremlin 1	protein-coding
diff_RLAGL_Vector_cond1_5585	chr2	81892349	81893050	+	14.07245	NA	Intergenic	RLTR1F_Mm|LTR|ERVK	-160959	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding
diff_RLAGL_Vector_cond1_6501	chr3	102490829	102491033	+	14.06932	NA	intron (NM_001112698, intron 1 of 2)	MER44D|DNA|TcMar-Tigger	21012	NM_001112698	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding
diff_RLAGL_Vector_cond1_49	chr1	12991038	12991357	+	14.06913	NA	promoter-TSS (NM_172841)	promoter-TSS (NM_172841)	-62	NM_172841	240726	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding
diff_RLAGL_Vector_cond1_2197	chr12	39974980	39975399	+	14.06255	NA	Intergenic	RLTR35B_MM|LTR|ERVL	62187	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
diff_RLAGL_Vector_cond1_6840	chr4	14621572	14621994	+	14.05445	NA	promoter-TSS (NM_145947)	promoter-TSS (NM_145947)	-5	NM_145947	208890	Mm.483839	NM_145947	ENSMUSG00000040569	Slc26a7	-	solute carrier family 26, member 7	protein-coding
diff_RLAGL_Vector_cond1_8634	chr6	127335391	127335883	+	14.04397	NA	Intergenic	Intergenic	-27670	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA
diff_RLAGL_Vector_cond1_5632	chr2	93014251	93015216	+	14.04034	NA	intron (NM_001177536, intron 1 of 6)	CpG	-14615	NR_110333	433456	Mm.235231	NM_001002794	ENSMUSG00000075027	4631405J19Rik	-	RIKEN cDNA 4631405J19 gene	ncRNA
diff_RLAGL_Vector_cond1_4523	chr17	59013220	59013533	+	14.03909	NA	promoter-TSS (NM_026497)	promoter-TSS (NM_026497)	-54	NM_026497	67993	Mm.36507	NM_026497		Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
diff_RLAGL_Vector_cond1_7082	chr4	82287523	82287802	+	14.03773	NA	Intergenic	Intergenic	218117	NM_001286131	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding
diff_RLAGL_Vector_cond1_8495	chr6	95846641	95846850	+	14.03735	NA	Intergenic	Intergenic	-127899	NM_011507	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding
diff_RLAGL_Vector_cond1_3115	chr14	48120669	48120971	+	14.02894	NA	promoter-TSS (NM_033602)	promoter-TSS (NM_033602)	-49	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding
diff_RLAGL_Vector_cond1_3311	chr14	102982309	102983192	+	14.02746	NA	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-113	NM_177715	239217	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding
diff_RLAGL_Vector_cond1_4095	chr16	68765297	68765697	+	14.02194	NA	Intergenic	Intergenic	1034884	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA
diff_RLAGL_Vector_cond1_10277	chr9	106476882	106477322	+	14.02123	NA	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	-153	NM_001311150	235587	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding
diff_RLAGL_Vector_cond1_1597	chr11	35524799	35525084	+	14.01582	NA	intron (NM_011412, intron 5 of 35)	intron (NM_011412, intron 5 of 35)	-91875	NR_029799	723924		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA
diff_RLAGL_Vector_cond1_4063	chr16	59600952	59601212	+	14.00856	NA	Intergenic	CpG	-35863	NR_040564	75145	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA
diff_RLAGL_Vector_cond1_1580	chr11	31169882	31170498	+	13.99194	NA	Intergenic	RLTR9A3B|LTR|ERVK	-183825	NM_001290667	68044	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding
diff_RLAGL_Vector_cond1_2094	chr12	14302521	14302861	+	13.98499	NA	Intergenic	MER119|DNA|hAT-Charlie	41157	NR_045003	791361	Mm.217963	NR_045003		Gm16497	ENSMUSG00000066623	predicted gene 16497	ncRNA
diff_RLAGL_Vector_cond1_5989	chr2	160313615	160314027	+	13.97268	NA	intron (NM_001033411, intron 2 of 2)	intron (NM_001033411, intron 2 of 2)	13673	NM_001033411	329554	Mm.291144	NM_001033411		Gm826	-	predicted gene 826	protein-coding
diff_RLAGL_Vector_cond1_6642	chr3	136986101	136986335	+	13.96462	NA	Intergenic	Intergenic	316152	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding
diff_RLAGL_Vector_cond1_9423	chr8	24121125	24121421	+	13.95005	NA	Intergenic	Intergenic	317673	NM_026931	69068	Mm.25775	NM_026931		1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding
diff_RLAGL_Vector_cond1_3349	chr14	115005103	115005396	+	13.94876	NA	Intergenic	Lx8|LINE|L1	-38422	NR_029785	723905		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA
diff_RLAGL_Vector_cond1_173	chr1	47603337	47603957	+	13.94780	NA	Intergenic	Intergenic	-136522	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
diff_RLAGL_Vector_cond1_3772	chr15	93336865	93337165	+	13.94539	NA	promoter-TSS (NR_028315)	promoter-TSS (NR_028315)	-80	NM_024189	67057	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding
diff_RLAGL_Vector_cond1_6566	chr3	121405120	121405372	+	13.94152	NA	Intergenic	MER68|LTR|ERVL	-21295	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding
diff_RLAGL_Vector_cond1_7007	chr4	59937604	59937904	+	13.94072	NA	Intergenic	Intergenic	-22698	NM_021053	30936	Mm.284433	NM_021053		Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding
diff_RLAGL_Vector_cond1_9874	chr9	3199272	3199643	+	13.93792	NA	intron (NR_027988, intron 1 of 4)	intron (NR_027988, intron 1 of 4)	356	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA
diff_RLAGL_Vector_cond1_439	chr1	118825297	118825870	+	13.93780	NA	Intergenic	Intergenic	-128637	NR_105764	102465176		NR_105764	ENSMUSG00000098273	Mir6346	Gm27829|mmu-mir-6346	microRNA 6346	ncRNA
diff_RLAGL_Vector_cond1_1287	chr10	102753613	102753868	+	13.93288	NA	Intergenic	Intergenic	241518	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding
diff_RLAGL_Vector_cond1_8018	chr5	133869004	133869295	+	13.93108	NA	Intergenic	MTD|LTR|ERVL-MaLR	-230599	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_8174	chr6	12812085	12812633	+	13.92133	NA	Intergenic	Intergenic	-63106	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
diff_RLAGL_Vector_cond1_3055	chr14	25711132	25711526	+	13.91606	NA	TTS (NM_001101433)	TTS (NM_001101433)	-10047	NR_028021	68173	Mm.444727	NM_026595		Ppifos	4930520F12Rik|Ppifs	peptidylprolyl isomerase F, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_707	chr1	176813615	176815028	+	13.91312	NA	promoter-TSS (NM_029756)	promoter-TSS (NM_029756)	-339	NM_029756	76816	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding
diff_RLAGL_Vector_cond1_3338	chr14	106154976	106155703	+	13.90599	NA	Intergenic	Intergenic	49141	NM_198601	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding
diff_RLAGL_Vector_cond1_6096	chr2	175175846	175176164	+	13.90373	NA	Intergenic	Intergenic	30912	NM_001164689	626832	Mm.441314	NM_001164689		Gm6710	1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4	predicted gene 6710	protein-coding
diff_RLAGL_Vector_cond1_5017	chr18	83525678	83526284	+	13.89414	NA	Intergenic	Intergenic	-200097	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA
diff_RLAGL_Vector_cond1_6925	chr4	35992471	35992706	+	13.89392	NA	intron (NM_001166000, intron 7 of 8)	MERVL_2A-int|LTR|ERVL	-147384	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_9937	chr9	15945660	15945891	+	13.88026	NA	intron (NM_001080814, intron 19 of 24)	intron (NM_001080814, intron 19 of 24)	-71219	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
diff_RLAGL_Vector_cond1_2965	chr13	117669331	117669647	+	13.87473	NA	intron (NM_010408, intron 2 of 7)	intron (NM_010408, intron 2 of 7)	50522	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
diff_RLAGL_Vector_cond1_4211	chr16	94788064	94788420	+	13.86692	NA	intron (NM_001025584, intron 3 of 4)	intron (NM_001025584, intron 3 of 4)	68448	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
diff_RLAGL_Vector_cond1_581	chr1	153501656	153501907	+	13.86225	NA	Intergenic	Intergenic	-14121	NM_007842	13211	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding
diff_RLAGL_Vector_cond1_835	chr10	3307829	3308293	+	13.83569	NA	Intergenic	Intergenic	-40290	NM_001204916	670558	Mm.398582	NM_001204916	ENSMUSG00000091618	H60c	4632413I24Rik|Gm9491	histocompatibility 60c	protein-coding
diff_RLAGL_Vector_cond1_3943	chr16	35051097	35051438	+	13.79704	NA	intron (NM_023587, intron 3 of 6)	intron (NM_023587, intron 3 of 6)	28846	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding
diff_RLAGL_Vector_cond1_4114	chr16	75827029	75827331	+	13.79658	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-60362	NM_030201	110920	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding
diff_RLAGL_Vector_cond1_9922	chr9	14275010	14275318	+	13.79210	NA	Intergenic	Intergenic	-1137	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding
diff_RLAGL_Vector_cond1_7812	chr5	84417191	84417653	+	13.78818	NA	promoter-TSS (NM_007937)	promoter-TSS (NM_007937)	-40	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding
diff_RLAGL_Vector_cond1_1358	chr10	116346643	116347135	+	13.77147	NA	exon (NM_029928, exon 15 of 32)	exon (NM_029928, exon 15 of 32)	45515	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding
diff_RLAGL_Vector_cond1_2665	chr13	48260718	48261163	+	13.77088	NA	promoter-TSS (NM_031166)	promoter-TSS (NM_031166)	-487	NM_031166	15904	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding
diff_RLAGL_Vector_cond1_1582	chr11	31371470	31371854	+	13.76545	NA	Intergenic	CpG	-1601	NM_011491	20856	Mm.32506	NM_011491		Stc2	AW125853|Stc2l|mustc2	stanniocalcin 2	protein-coding
diff_RLAGL_Vector_cond1_8588	chr6	118188607	118188963	+	13.76467	NA	intron (NM_009050, intron 1 of 19)	intron (NM_009050, intron 1 of 19)	8959	NM_009050	19713	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_6762	chr3	156563128	156563344	+	13.75037	NA	intron (NM_001039094, intron 1 of 6)	intron (NM_001039094, intron 1 of 6)	1442	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding
diff_RLAGL_Vector_cond1_3460	chr15	10583505	10583729	+	13.74511	NA	intron (NM_001166408, intron 13 of 17)	intron (NM_001166408, intron 13 of 17)	-16676	NR_033541	100038608	Mm.450744	NR_033541		Gm10389	ENSMUSG00000072658	predicted gene 10389	ncRNA
diff_RLAGL_Vector_cond1_7914	chr5	110448770	110449071	+	13.72974	NA	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-417	NM_001142642	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding
diff_RLAGL_Vector_cond1_9444	chr8	29219144	29219978	+	13.72282	NA	promoter-TSS (NM_153135)	promoter-TSS (NM_153135)	75	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_9420	chr8	23802945	23803190	+	13.71954	NA	intron (NM_177086, intron 3 of 6)	intron (NM_177086, intron 3 of 6)	133406	NM_001277239	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding
diff_RLAGL_Vector_cond1_8934	chr7	41393068	41393929	+	13.71566	NA	promoter-TSS (NM_183167)	promoter-TSS (NM_183167)	-119	NM_001199330	233168	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding
diff_RLAGL_Vector_cond1_8562	chr6	114800350	114800697	+	13.70761	NA	intron (NM_028835, intron 18 of 18)	intron (NM_028835, intron 18 of 18)	121229	NM_177683	232334	Mm.268357	NM_177683		Vgll4	BC048841|VGL-4	vestigial like 4 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9251	chr7	129937608	129938018	+	13.70627	NA	Intergenic	Intergenic	-24352	NR_046077	100043150	Mm.334264	NR_046077		Gm4265	-	predicted gene 4265	ncRNA
diff_RLAGL_Vector_cond1_3521	chr15	33308509	33308760	+	13.70210	NA	intron (NM_176073, intron 4 of 7)	MTC|LTR|ERVL-MaLR	97305	NR_033608	73486	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo
diff_RLAGL_Vector_cond1_4738	chr18	8935147	8935372	+	13.69517	NA	Intergenic	RMER17B|LTR|ERVK	-277597	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled homolog 8 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6247	chr3	36150846	36151313	+	13.69044	NA	promoter-TSS (NM_001101478)	promoter-TSS (NM_001101478)	-1	NM_001101478	241944	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding
diff_RLAGL_Vector_cond1_2796	chr13	70641401	70641648	+	13.68099	NA	Intergenic	Intergenic	-3890	NM_144837	218333	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
diff_RLAGL_Vector_cond1_949	chr10	28118905	28119146	+	13.67970	NA	intron (NM_008983, intron 1 of 31)	intron (NM_008983, intron 1 of 31)	44205	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding
diff_RLAGL_Vector_cond1_8531	chr6	107529550	107530372	+	13.67740	NA	5' UTR (NM_008516, exon 1 of 2)	5' UTR (NM_008516, exon 1 of 2)	235	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding
diff_RLAGL_Vector_cond1_9699	chr8	88531387	88531649	+	13.67584	NA	intron (NM_001163660, intron 1 of 7)	intron (NM_001163660, intron 1 of 7)	3885	NM_001163660	93960	Mm.30219	NM_027280	ENSMUSG00000031661	Nkd1	2810434J10Rik|9030215G15Rik|Nkd	naked cuticle 1 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2472	chr12	116047439	116047825	+	13.66951	NA	promoter-TSS (NM_001004066)	promoter-TSS (NM_001004066)	-92	NM_019565	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding
diff_RLAGL_Vector_cond1_6743	chr3	154268394	154268728	+	13.66006	NA	intron (NM_001081263, intron 21 of 21)	intron (NM_001081263, intron 21 of 21)	61999	NM_010713	16875	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding
diff_RLAGL_Vector_cond1_9533	chr8	53171793	53172054	+	13.65621	NA	Intergenic	Intergenic	-339779	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding
diff_RLAGL_Vector_cond1_8010	chr5	132724503	132724760	+	13.64767	NA	Intergenic	Intergenic	-182288	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
diff_RLAGL_Vector_cond1_5197	chr19	51533253	51533534	+	13.64154	NA	Intergenic	Intergenic	-730904	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding
diff_RLAGL_Vector_cond1_2387	chr12	100282207	100282592	+	13.63660	NA	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	5790	NR_045741	100038713	Mm.470751	NR_045741		Gm10432	ENSMUSG00000072882	predicted gene 10432	ncRNA
diff_RLAGL_Vector_cond1_1565	chr11	28912558	28913180	+	13.63229	NA	intron (NM_146015, intron 5 of 10)	intron (NM_146015, intron 5 of 10)	59664	NM_146015	216616	Mm.44176	NM_146015	ENSMUSG00000020467	Efemp1	-	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	protein-coding
diff_RLAGL_Vector_cond1_5486	chr2	58361466	58361926	+	13.62490	NA	Intergenic	Intergenic	-3938	NM_001111030	269275	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding
diff_RLAGL_Vector_cond1_10577	chrX	151343753	151344009	+	13.61963	NA	promoter-TSS (NM_198105)	promoter-TSS (NM_198105)	-342	NM_198105	207375	Mm.391339	NM_198105		Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding
diff_RLAGL_Vector_cond1_357	chr1	91459368	91459750	+	13.61239	NA	promoter-TSS (NM_011066)	promoter-TSS (NM_011066)	-231	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding
diff_RLAGL_Vector_cond1_9566	chr8	60632344	60633187	+	13.60468	NA	promoter-TSS (NM_027756)	promoter-TSS (NM_027756)	-60	NM_001293769	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding
diff_RLAGL_Vector_cond1_2726	chr13	61803884	61804610	+	13.60009	NA	Intergenic	Intergenic	32667	NR_028430	432812	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo
diff_RLAGL_Vector_cond1_4635	chr17	82846614	82847080	+	13.59276	NA	Intergenic	Lx7|LINE|L1	231378	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
diff_RLAGL_Vector_cond1_1497	chr11	10102303	10102676	+	13.58646	NA	Intergenic	RLTR1B|LTR|ERV1	910547	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
diff_RLAGL_Vector_cond1_4750	chr18	12503985	12504226	+	13.58107	NA	intron (NM_010680, intron 38 of 74)	intron (NM_010680, intron 38 of 74)	-139428	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding
diff_RLAGL_Vector_cond1_1004	chr10	39370791	39370999	+	13.57934	NA	intron (NM_008054, intron 1 of 13)	intron (NM_008054, intron 1 of 13)	1096	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_4079	chr16	64851658	64852117	+	13.57734	NA	promoter-TSS (NM_178647)	promoter-TSS (NM_178647)	-198	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_4270	chr17	13683447	13684162	+	13.56952	NA	Intergenic	Intergenic	-76737	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Mllt4	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|S-afadin	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	protein-coding
diff_RLAGL_Vector_cond1_4588	chr17	73399191	73399396	+	13.56754	NA	promoter-TSS (NM_001033444)	promoter-TSS (NM_001033444)	3	NM_001033444	381122	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding
diff_RLAGL_Vector_cond1_560	chr1	147935912	147936258	+	13.56322	NA	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	1438398	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_3307	chr14	102769800	102770026	+	13.56164	NA	Intergenic	L1_Mus3|LINE|L1	212719	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
diff_RLAGL_Vector_cond1_426	chr1	113956388	113956602	+	13.55648	NA	Intergenic	Intergenic	-1728642	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
diff_RLAGL_Vector_cond1_10390	chrX	7574442	7574928	+	13.55209	NA	promoter-TSS (NM_138605)	promoter-TSS (NM_138605)	-404	NM_001290574	54646	Mm.148163	NM_138605	ENSMUSG00000039556	Ppp1r3f	DXImx48e|R3F|RF3|Sfc15	protein phosphatase 1, regulatory (inhibitor) subunit 3F	protein-coding
diff_RLAGL_Vector_cond1_8282	chr6	41604439	41604902	+	13.54715	NA	promoter-TSS (NM_007680)	promoter-TSS (NM_007680)	-812	NM_007680	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding
diff_RLAGL_Vector_cond1_3672	chr15	68928042	68928818	+	13.54670	NA	promoter-TSS (NM_010158)	promoter-TSS (NM_010158)	10	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
diff_RLAGL_Vector_cond1_8849	chr7	18533426	18533728	+	13.52123	NA	Intergenic	MTD|LTR|ERVL-MaLR	-1350	NM_054060	114868	Mm.389809	NM_054060	ENSMUSG00000070798	Psg25	cea13	pregnancy-specific glycoprotein 25	protein-coding
diff_RLAGL_Vector_cond1_2733	chr13	62623919	62624437	+	13.51364	NA	promoter-TSS (NM_173381)	promoter-TSS (NM_173381)	4	NM_173381	211378	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding
diff_RLAGL_Vector_cond1_760	chr1	184478069	184478323	+	13.51237	NA	Intergenic	Intergenic	79495	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA
diff_RLAGL_Vector_cond1_629	chr1	163443838	163444199	+	13.51038	NA	Intergenic	Intergenic	-40349	NM_178883	98376	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding
diff_RLAGL_Vector_cond1_380	chr1	97662047	97662346	+	13.50669	NA	promoter-TSS (NM_133825)	promoter-TSS (NM_133825)	-178	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding
diff_RLAGL_Vector_cond1_784	chr1	188937404	188937829	+	13.50302	NA	intron (NM_021408, intron 63 of 70)	intron (NM_021408, intron 63 of 70)	70224	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_7124	chr4	91371920	91372235	+	13.49929	NA	promoter-TSS (NM_207686)	promoter-TSS (NM_207686)	-22	NM_207686	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding
diff_RLAGL_Vector_cond1_4151	chr16	85133525	85133854	+	13.49733	NA	intron (NM_007471, intron 1 of 15)	intron (NM_007471, intron 1 of 15)	40018	NM_001198826	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding
diff_RLAGL_Vector_cond1_8072	chr5	140514810	140515082	+	13.49155	NA	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	9337	NM_021528	59031	Mm.28934	NM_021528		Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding
diff_RLAGL_Vector_cond1_578	chr1	152808135	152808570	+	13.48908	NA	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	8199	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding
diff_RLAGL_Vector_cond1_8939	chr7	42692536	42693172	+	13.48541	NA	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-136	NM_001008427	434179	Mm.284947	NM_001008427	ENSMUSG00000069727	Gm5595	EG434179|mszf88	predicted gene 5595	protein-coding
diff_RLAGL_Vector_cond1_1119	chr10	71369552	71369831	+	13.47378	NA	intron (NM_027184, intron 3 of 5)	intron (NM_027184, intron 3 of 5)	21898	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding
diff_RLAGL_Vector_cond1_5855	chr2	140861331	140861663	+	13.47085	NA	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-190021	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_8928	chr7	39552328	39552921	+	13.46761	NA	Intergenic	CpG	34858	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding
diff_RLAGL_Vector_cond1_2522	chr13	4771334	4771910	+	13.45546	NA	Intergenic	Intergenic	-162458	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding
diff_RLAGL_Vector_cond1_3061	chr14	28098977	28099318	+	13.44576	NA	intron (NM_177814, intron 12 of 15)	intron (NM_177814, intron 12 of 15)	-406326	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
diff_RLAGL_Vector_cond1_6498	chr3	101711864	101712091	+	13.44389	NA	Intergenic	Intergenic	-107270	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
diff_RLAGL_Vector_cond1_8206	chr6	19736357	19736731	+	13.44180	NA	Intergenic	Intergenic	181202	NR_105789	102465192		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA
diff_RLAGL_Vector_cond1_4605	chr17	76535815	76536269	+	13.43231	NA	Intergenic	RLTR22_Mur|LTR|ERVK	675019	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
diff_RLAGL_Vector_cond1_6806	chr4	7220513	7220905	+	13.43080	NA	Intergenic	Intergenic	-229986	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
diff_RLAGL_Vector_cond1_5422	chr2	43295691	43296183	+	13.41285	NA	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-259388	NM_001289593	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding
diff_RLAGL_Vector_cond1_2404	chr12	103325458	103325700	+	13.41053	NA	exon (NM_023049, exon 8 of 10)	exon (NM_023049, exon 8 of 10)	10620	NM_001195726	100504156	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding
diff_RLAGL_Vector_cond1_1973	chr11	116962944	116963152	+	13.39451	NA	intron (NM_172948, intron 8 of 16)	intron (NM_172948, intron 8 of 16)	44185	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding
diff_RLAGL_Vector_cond1_8081	chr5	142622093	142622308	+	13.38719	NA	Intergenic	Intergenic	-7384	NM_178398	74781	Mm.29432	NM_178398		Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding
diff_RLAGL_Vector_cond1_10415	chrX	24062255	24062932	+	13.38437	NA	Intergenic	L1_Mur1|LINE|L1	169830	NM_001034864	236749	Mm.296422	NM_001034864	ENSMUSG00000068113	Gm4907	EG236749	predicted gene 4907	protein-coding
diff_RLAGL_Vector_cond1_5849	chr2	140066415	140067190	+	13.38435	NA	promoter-TSS (NM_001159641)	promoter-TSS (NM_001159641)	3	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding
diff_RLAGL_Vector_cond1_4562	chr17	69062278	69062672	+	13.38387	NA	Intergenic	Intergenic	-94335	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding
diff_RLAGL_Vector_cond1_3453	chr15	9675653	9675907	+	13.38316	NA	intron (NM_177123, intron 15 of 17)	intron (NM_177123, intron 15 of 17)	73088	NM_001305044	320277	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding
diff_RLAGL_Vector_cond1_7543	chr5	15846833	15847163	+	13.37400	NA	Intergenic	Intergenic	36768	NR_045974	75058	Mm.183467	NR_045974	ENSMUSG00000105185	4930519H02Rik	-	RIKEN cDNA 4930519H02 gene	ncRNA
diff_RLAGL_Vector_cond1_8297	chr6	43702887	43703190	+	13.36557	NA	Intergenic	Intergenic	-36760	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
diff_RLAGL_Vector_cond1_7598	chr5	27421209	27421543	+	13.34218	NA	intron (NM_001198886, intron 3 of 25)	RLTR9D|LTR|ERVK	80016	NM_028561	73526	Mm.389608	NM_028561	ENSMUSG00000048703	Speer4b	1700081O22Rik|SPEER-4B	spermatogenesis associated glutamate (E)-rich protein 4B	protein-coding
diff_RLAGL_Vector_cond1_5777	chr2	128284879	128285111	+	13.34123	NA	Intergenic	Intergenic	144356	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA
diff_RLAGL_Vector_cond1_5431	chr2	45608865	45609249	+	13.33985	NA	Intergenic	Lx8b|LINE|L1	-87548	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
diff_RLAGL_Vector_cond1_9084	chr7	79029180	79029478	+	13.33812	NA	intron (NR_132432, intron 1 of 2)	Charlie1|DNA|hAT-Charlie	23994	NR_132432	102633600	Mm.382916	NR_132432		Gm26633	-	predicted gene, 26633	ncRNA
diff_RLAGL_Vector_cond1_4282	chr17	16753688	16753948	+	13.33375	NA	Intergenic	Intergenic	-310285	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding
diff_RLAGL_Vector_cond1_7334	chr4	133886011	133886466	+	13.31840	NA	intron (NM_009097, intron 1 of 21)	intron (NM_009097, intron 1 of 21)	1559	NM_001285505	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_7432	chr4	147868371	147868891	+	13.31135	NA	promoter-TSS (NM_001025365)	promoter-TSS (NM_001025365)	88	NM_001025365	28010	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding
diff_RLAGL_Vector_cond1_3374	chr14	120368940	120369239	+	13.30385	NA	intron (NM_175341, intron 2 of 8)	MIR|SINE|MIR	93420	NM_207515	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding
diff_RLAGL_Vector_cond1_4944	chr18	70052976	70053569	+	13.30263	NA	5' UTR (NM_030554, exon 1 of 6)	5' UTR (NM_030554, exon 1 of 6)	316	NM_030554	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_3577	chr15	51637539	51637934	+	13.29577	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	227725	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
diff_RLAGL_Vector_cond1_2264	chr12	58545764	58546159	+	13.29052	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-276703	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
diff_RLAGL_Vector_cond1_3402	chr14	123661106	123661419	+	13.28938	NA	intron (NM_145467, intron 1 of 10)	intron (NM_145467, intron 1 of 10)	1122	NM_145467	223272	Mm.383176	NM_145467		Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding
diff_RLAGL_Vector_cond1_6215	chr3	22636919	22637365	+	13.28013	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	385772	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA
diff_RLAGL_Vector_cond1_4109	chr16	72989683	72989883	+	13.27782	NA	exon (NM_019413, exon 17 of 29)	exon (NM_019413, exon 17 of 29)	326634	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2122	chr12	22906211	22906690	+	13.26867	NA	Intergenic	CpG	103793	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA
diff_RLAGL_Vector_cond1_1490	chr11	9048375	9049140	+	13.26310	NA	5' UTR (NM_001037928, exon 1 of 7)	5' UTR (NM_001037928, exon 1 of 7)	165	NM_001037928	626870	Mm.369429	NM_001037928	ENSMUSG00000040978	Gm11992	OTTMUSG00000005148	predicted gene 11992	protein-coding
diff_RLAGL_Vector_cond1_7064	chr4	75968738	75968941	+	13.26132	NA	intron (NM_011211, intron 33 of 39)	intron (NM_011211, intron 33 of 39)	-690553	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
diff_RLAGL_Vector_cond1_9632	chr8	76507267	76507691	+	13.25795	NA	Intergenic	B4A|SINE|B4	392694	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
diff_RLAGL_Vector_cond1_8945	chr7	43634536	43634827	+	13.25620	NA	promoter-TSS (NM_028236)	promoter-TSS (NM_028236)	-58	NM_028236	72431	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding
diff_RLAGL_Vector_cond1_6539	chr3	110250897	110251151	+	13.25124	NA	promoter-TSS (NM_178891)	promoter-TSS (NM_178891)	-25	NM_178891	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding
diff_RLAGL_Vector_cond1_536	chr1	140406697	140406929	+	13.24173	NA	intron (NM_001081027, intron 8 of 27)	intron (NM_001081027, intron 8 of 27)	160556	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding
diff_RLAGL_Vector_cond1_6138	chr3	5218329	5218553	+	13.23966	NA	promoter-TSS (NM_030708)	promoter-TSS (NM_030708)	-113	NM_030708	80892	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding
diff_RLAGL_Vector_cond1_10422	chrX	43686588	43686934	+	13.23706	NA	Intergenic	Intergenic	95772	NM_001195271	637093	Mm.368463	NM_001195271	ENSMUSG00000078320	Gm362	-	predicted gene 362	protein-coding
diff_RLAGL_Vector_cond1_55	chr1	15582245	15582647	+	13.23686	NA	intron (NM_001098528, intron 1 of 1)	intron (NM_001098528, intron 1 of 1)	-223200	NM_001286628	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding
diff_RLAGL_Vector_cond1_5331	chr2	20961887	20962121	+	13.23644	NA	intron (NM_001081364, intron 1 of 23)	intron (NM_001081364, intron 1 of 23)	5717	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding
diff_RLAGL_Vector_cond1_1572	chr11	30025882	30026340	+	13.23511	NA	promoter-TSS (NM_146016)	promoter-TSS (NM_146016)	-78	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding
diff_RLAGL_Vector_cond1_3774	chr15	93539394	93539802	+	13.23046	NA	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	56293	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_682	chr1	172989787	172990619	+	13.22227	NA	Intergenic	Intergenic	33435	NM_008763	18313	Mm.377103	NM_008763		Olfr16	MOR23|MOR26713	olfactory receptor 16	protein-coding
diff_RLAGL_Vector_cond1_10573	chrX	145505951	145506228	+	13.22191	NA	Intergenic	Intergenic	-18450	NM_001290274	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding
diff_RLAGL_Vector_cond1_5702	chr2	110597006	110597381	+	13.21692	NA	promoter-TSS (NM_001177624)	promoter-TSS (NM_001177624)	-106	NM_001003915	241612	Mm.277148	NM_001003915		Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding
diff_RLAGL_Vector_cond1_660	chr1	168708099	168708810	+	13.21318	NA	Intergenic	Intergenic	217811	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA
diff_RLAGL_Vector_cond1_5376	chr2	30545166	30545428	+	13.21237	NA	Intergenic	CpG	-49747	NM_030137	78617	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding
diff_RLAGL_Vector_cond1_766	chr1	186116990	186117478	+	13.18778	NA	promoter-TSS (NM_146106)	promoter-TSS (NM_146106)	76	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding
diff_RLAGL_Vector_cond1_2758	chr13	65278386	65279008	+	13.18646	NA	promoter-TSS (NM_178364)	promoter-TSS (NM_178364)	-157	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding
diff_RLAGL_Vector_cond1_3343	chr14	109697922	109698255	+	13.16858	NA	Intergenic	RLTR22_Mur|LTR|ERVK	237858	NR_039542	100628607		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA
diff_RLAGL_Vector_cond1_2502	chr12	119099834	119100087	+	13.16811	NA	Intergenic	Intergenic	-133539	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding
diff_RLAGL_Vector_cond1_10449	chrX	67238875	67239409	+	13.16382	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-400017	NR_030149	723888		NR_030149	ENSMUSG00000070071	Mir465	Mirn465|mir-465a|mmu-mir-465	microRNA 465	ncRNA
diff_RLAGL_Vector_cond1_411	chr1	107706031	107706508	+	13.16355	NA	Intergenic	Intergenic	116263	NM_001159748	20725	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding
diff_RLAGL_Vector_cond1_7067	chr4	76241191	76241624	+	13.15468	NA	intron (NM_011211, intron 13 of 39)	intron (NM_011211, intron 13 of 39)	-963121	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
diff_RLAGL_Vector_cond1_880	chr10	11149123	11149640	+	13.15314	NA	promoter-TSS (NM_001077707)	promoter-TSS (NM_001077707)	-49	NM_001077707	268281	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding
diff_RLAGL_Vector_cond1_4679	chr17	89934064	89934361	+	13.15171	NA	Intergenic	RLTR9D|LTR|ERVK	554971	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
diff_RLAGL_Vector_cond1_5346	chr2	23481702	23482218	+	13.14521	NA	Intergenic	Intergenic	90144	NM_001165998	76857	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding
diff_RLAGL_Vector_cond1_2666	chr13	48552116	48552328	+	13.14233	NA	Intergenic	Intergenic	-13950	NR_029725	387244		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA
diff_RLAGL_Vector_cond1_6575	chr3	125884773	125885249	+	13.13609	NA	intron (NM_011674, intron 2 of 5)	intron (NM_011674, intron 2 of 5)	53539	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding
diff_RLAGL_Vector_cond1_2532	chr13	6547944	6548361	+	13.13437	NA	promoter-TSS (NM_145131)	promoter-TSS (NM_145131)	-5	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding
diff_RLAGL_Vector_cond1_8536	chr6	108212892	108213242	+	13.13412	NA	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-29	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding
diff_RLAGL_Vector_cond1_9708	chr8	91312970	91313660	+	13.13008	NA	promoter-TSS (NM_011936)	promoter-TSS (NM_011936)	-93	NM_173431	244585	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding
diff_RLAGL_Vector_cond1_9059	chr7	73233857	73234073	+	13.12518	NA	Intergenic	Charlie13b|DNA|hAT-Charlie	-76415	NR_105062	100505025	Mm.445959	NR_105062		LOC100505025	-	uncharacterized LOC100505025	ncRNA
diff_RLAGL_Vector_cond1_6376	chr3	68558800	68559049	+	13.11611	NA	intron (NM_001282045, intron 2 of 7)	intron (NM_001282045, intron 2 of 7)	-13444	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_2722	chr13	60809750	60810008	+	13.11174	NA	Intergenic	Intergenic	-7035	NM_027344	70202	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding
diff_RLAGL_Vector_cond1_4866	chr18	47214024	47214408	+	13.11088	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	154652	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding
diff_RLAGL_Vector_cond1_2830	chr13	78163077	78163420	+	13.09498	NA	intron (NM_001163419, intron 9 of 9)	intron (NM_001163419, intron 9 of 9)	-34769	NR_045195	320174	Mm.393122	NR_045195		A830082K12Rik	-	RIKEN cDNA A830082K12 gene	ncRNA
diff_RLAGL_Vector_cond1_3258	chr14	86421953	86422275	+	13.08747	NA	Intergenic	MTD|LTR|ERVL-MaLR	176144	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
diff_RLAGL_Vector_cond1_4767	chr18	19701382	19701826	+	13.08513	NA	Intergenic	Intergenic	300493	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding
diff_RLAGL_Vector_cond1_4870	chr18	47431533	47431781	+	13.08322	NA	Intergenic	Intergenic	-21011	NR_033453	77668	Mm.98433	NR_033453		9130209A04Rik	-	RIKEN cDNA 9130209A04 gene	ncRNA
diff_RLAGL_Vector_cond1_976	chr10	32890860	32891076	+	13.07172	NA	Intergenic	Intergenic	-1053	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
diff_RLAGL_Vector_cond1_7733	chr5	53379560	53379906	+	13.06583	NA	Intergenic	Intergenic	112627	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding
diff_RLAGL_Vector_cond1_8268	chr6	37748370	37748595	+	13.06119	NA	Intergenic	Intergenic	-122329	NM_145076	21848	Mm.41063	NM_145076		Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding
diff_RLAGL_Vector_cond1_5423	chr2	43555853	43556243	+	13.04335	NA	intron (NM_027552, intron 1 of 13)	intron (NM_027552, intron 1 of 13)	723	NM_027552	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding
diff_RLAGL_Vector_cond1_9310	chr7	140955757	140956195	+	13.04297	NA	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	-15	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding
diff_RLAGL_Vector_cond1_7143	chr4	97465802	97466441	+	13.02942	NA	Intergenic	Intergenic	-115822	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
diff_RLAGL_Vector_cond1_4242	chr17	7169674	7170172	+	13.02835	NA	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-192	NM_011299	20112	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding
diff_RLAGL_Vector_cond1_4267	chr17	13540942	13541142	+	13.00293	NA	intron (NR_045436, intron 2 of 4)	intron (NR_045436, intron 2 of 4)	13052	NR_045437	72578	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA
diff_RLAGL_Vector_cond1_7108	chr4	87660319	87660524	+	13.00114	NA	Intergenic	Intergenic	145902	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	protein-coding
diff_RLAGL_Vector_cond1_8289	chr6	42692156	42692475	+	12.98707	NA	intron (NM_029930, intron 1 of 7)	intron (NM_029930, intron 1 of 7)	744	NM_029930	77574	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding
diff_RLAGL_Vector_cond1_2525	chr13	5425384	5425989	+	12.97815	NA	Intergenic	Intergenic	432406	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
diff_RLAGL_Vector_cond1_9113	chr7	85104598	85104862	+	12.95900	NA	Intergenic	RLTR9E|LTR|ERVK	51172	NM_001102579	620672	Mm.469836	NM_001102579	ENSMUSG00000095664	Vmn2r67	EG620672	vomeronasal 2, receptor 67	protein-coding
diff_RLAGL_Vector_cond1_2099	chr12	16591505	16591855	+	12.95783	NA	Intergenic	Intergenic	-1910	NM_001130412	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding
diff_RLAGL_Vector_cond1_2756	chr13	65130168	65130466	+	12.94996	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-17335	NM_001083901	66631	Mm.239196	NM_133680	ENSMUSG00000038212	Hiatl1	5730414C17Rik|AU045608|AW539692	hippocampus abundant transcript-like 1	protein-coding
diff_RLAGL_Vector_cond1_102	chr1	25495356	25495837	+	12.94449	NA	intron (NM_175642, intron 9 of 30)	ORR1F|LTR|ERVL-MaLR	-217642	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
diff_RLAGL_Vector_cond1_8178	chr6	13677692	13678273	+	12.94392	NA	promoter-TSS (NM_175312)	promoter-TSS (NM_175312)	-16	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	B630005N14Rik	AI666701	RIKEN cDNA B630005N14 gene	protein-coding
diff_RLAGL_Vector_cond1_3199	chr14	70177594	70177956	+	12.93775	NA	promoter-TSS (NM_001253736)	promoter-TSS (NM_001253736)	-103	NM_145978	213019	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding
diff_RLAGL_Vector_cond1_9479	chr8	39005715	39006030	+	12.92032	NA	promoter-TSS (NM_030254)	promoter-TSS (NM_030254)	5	NM_030254	80286	Mm.272722	NM_030254		Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding
diff_RLAGL_Vector_cond1_4094	chr16	68705937	68706236	+	12.91988	NA	Intergenic	Intergenic	-1085178	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_691	chr1	174212314	174212610	+	12.91959	NA	intron (NM_011465, intron 25 of 51)	intron (NM_011465, intron 25 of 51)	38514	NM_146715	258710	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding
diff_RLAGL_Vector_cond1_2717	chr13	60601584	60602234	+	12.91849	NA	promoter-TSS (NM_001285917)	promoter-TSS (NM_001285917)	-38	NM_001285917	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding
diff_RLAGL_Vector_cond1_8521	chr6	101101896	101102526	+	12.90783	NA	Intergenic	Intergenic	268573	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding
diff_RLAGL_Vector_cond1_5482	chr2	57496631	57496919	+	12.90436	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	258393	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_6695	chr3	146708441	146708666	+	12.90031	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-57236	NM_029144	75015	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding
diff_RLAGL_Vector_cond1_2216	chr12	45196731	45196985	+	12.89935	NA	Intergenic	RLTR1A2_MM|LTR|ERV1	-122375	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
diff_RLAGL_Vector_cond1_4283	chr17	16840136	16840468	+	12.89819	NA	Intergenic	L2c|LINE|L2	-223801	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding
diff_RLAGL_Vector_cond1_3256	chr14	85738685	85738981	+	12.89763	NA	Intergenic	Intergenic	-507137	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
diff_RLAGL_Vector_cond1_2194	chr12	39660431	39660702	+	12.89554	NA	Intergenic	RLTR42-int|LTR|ERVK	376810	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
diff_RLAGL_Vector_cond1_8365	chr6	62044545	62044960	+	12.89019	NA	intron (NM_001164316, intron 10 of 10)	intron (NM_001164316, intron 10 of 10)	-863942	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
diff_RLAGL_Vector_cond1_5999	chr2	161549597	161549935	+	12.88250	NA	intron (NM_001291150, intron 26 of 30)	intron (NM_001291150, intron 26 of 30)	-440680	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
diff_RLAGL_Vector_cond1_4928	chr18	66854479	66854753	+	12.87872	NA	Intergenic	Intergenic	5871	NM_016977	17202	Mm.229447	NM_016977	ENSMUSG00000047259	Mc4r	Mc4-r	melanocortin 4 receptor	protein-coding
diff_RLAGL_Vector_cond1_2279	chr12	66498889	66499202	+	12.86795	NA	intron (NM_207010, intron 13 of 15)	Tigger1|DNA|TcMar-Tigger	-214644	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding
diff_RLAGL_Vector_cond1_3298	chr14	101574512	101574761	+	12.84912	NA	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	34555	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding
diff_RLAGL_Vector_cond1_1235	chr10	88861471	88861724	+	12.83957	NA	Intergenic	Intergenic	-24395	NM_145423	216225	Mm.77381	NM_145423	ENSMUSG00000020062	Slc5a8	Ait|SMCT	solute carrier family 5 (iodide transporter), member 8	protein-coding
diff_RLAGL_Vector_cond1_2877	chr13	93063400	93063646	+	12.83808	NA	exon (NM_023821, exon 9 of 13)	exon (NM_023821, exon 9 of 13)	-9781	NR_036451	100502942	Mm.441946	NM_177623		Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA
diff_RLAGL_Vector_cond1_8180	chr6	13816598	13816853	+	12.81709	NA	Intergenic	Intergenic	23123	NM_145066	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding
diff_RLAGL_Vector_cond1_9803	chr8	117334834	117335056	+	12.80735	NA	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-14225	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding
diff_RLAGL_Vector_cond1_6570	chr3	122915901	122916239	+	12.79672	NA	intron (NR_046036, intron 3 of 5)	L1MB2|LINE|L1	8046	NR_046036	74057	Mm.159123	NR_046036	ENSMUSG00000097852	4933405D12Rik	-	RIKEN cDNA 4933405D12 gene	ncRNA
diff_RLAGL_Vector_cond1_602	chr1	158119600	158120007	+	12.79603	NA	Intergenic	Intergenic	236457	NM_207583	240843	Mm.329579	NM_207583	ENSMUSG00000004031	Brinp2	6430517E21Rik|BB361039|Fam5b|mKIAA1747	bone morphogenic protein/retinoic acid inducible neural-specific 2	protein-coding
diff_RLAGL_Vector_cond1_8075	chr5	141380698	141381158	+	12.79563	NA	intron (NM_177879, intron 1 of 44)	intron (NM_177879, intron 1 of 44)	139394	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick homolog 1 (chicken)	protein-coding
diff_RLAGL_Vector_cond1_10389	chrX	6399703	6400138	+	12.79517	NA	promoter-TSS (NM_001040459)	promoter-TSS (NM_001040459)	-112	NM_001040459	208431	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding
diff_RLAGL_Vector_cond1_5722	chr2	115562523	115562771	+	12.79482	NA	Intergenic	Intergenic	-19069	NM_207264	399568	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding
diff_RLAGL_Vector_cond1_495	chr1	133800948	133801236	+	12.78481	NA	Intergenic	Intergenic	-47345	NM_213616	381290	Mm.188617	NM_213616	ENSMUSG00000026463	Atp2b4	Pmca4	ATPase, Ca++ transporting, plasma membrane 4	protein-coding
diff_RLAGL_Vector_cond1_401	chr1	105990282	105990603	+	12.77652	NA	promoter-TSS (NM_001122676)	promoter-TSS (NM_001122676)	36	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_8094	chr5	146678413	146678680	+	12.76664	NA	Intergenic	Intergenic	-93307	NM_001010941	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding
diff_RLAGL_Vector_cond1_8802	chr7	6171893	6172502	+	12.76073	NA	promoter-TSS (NM_028316)	promoter-TSS (NM_028316)	-316	NM_028316	72667	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding
diff_RLAGL_Vector_cond1_6644	chr3	137179301	137179576	+	12.76022	NA	Intergenic	B4A|SINE|B4	-161640	NM_016885	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding
diff_RLAGL_Vector_cond1_9041	chr7	70219358	70219650	+	12.74946	NA	intron (NR_131145, intron 1 of 3)	intron (NR_131145, intron 1 of 3)	118318	NR_131145	624549	Mm.116344	NR_131144		Gm29683	-	predicted gene, 29683	ncRNA
diff_RLAGL_Vector_cond1_5686	chr2	108236351	108237082	+	12.74725	NA	Intergenic	Intergenic	946127	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
diff_RLAGL_Vector_cond1_1472	chr11	7354628	7355004	+	12.74617	NA	Intergenic	L1MB7|LINE|L1	-140893	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_6108	chr2	178342153	178342455	+	12.73851	NA	Intergenic	RLTR22_Mus|LTR|ERVK	65354	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding
diff_RLAGL_Vector_cond1_8296	chr6	43676230	43676605	+	12.73097	NA	Intergenic	Intergenic	-10139	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
diff_RLAGL_Vector_cond1_9703	chr8	90302226	90302472	+	12.73001	NA	intron (NM_172913, intron 1 of 6)	intron (NM_172913, intron 1 of 6)	45903	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
diff_RLAGL_Vector_cond1_9618	chr8	71950833	71951187	+	12.72843	NA	promoter-TSS (NM_001164581)	promoter-TSS (NM_001164581)	-56	NM_001164581	234413	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding
diff_RLAGL_Vector_cond1_4470	chr17	49029616	49030215	+	12.69682	NA	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	83618	NR_038145	69311	Mm.46140	NR_038141	ENSMUSG00000101012	1700008K24Rik	-	RIKEN cDNA 1700008K24 gene	ncRNA
diff_RLAGL_Vector_cond1_4927	chr18	66291645	66291889	+	12.68688	NA	promoter-TSS (NM_178793)	promoter-TSS (NM_178793)	71	NM_178793	320924	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding
diff_RLAGL_Vector_cond1_3506	chr15	28158795	28159207	+	12.68556	NA	Intergenic	Intergenic	-44765	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
diff_RLAGL_Vector_cond1_2199	chr12	40538727	40539213	+	12.68200	NA	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	92917	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding
diff_RLAGL_Vector_cond1_7213	chr4	111901509	111901744	+	12.67805	NA	intron (NM_145551, intron 1 of 14)	intron (NM_145551, intron 1 of 14)	1170	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding
diff_RLAGL_Vector_cond1_2371	chr12	91849045	91849513	+	12.67411	NA	promoter-TSS (NM_001039089)	promoter-TSS (NM_001039089)	-122	NM_011344	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_9471	chr8	36217699	36217986	+	12.67089	NA	intron (NM_001081150, intron 11 of 11)	intron (NM_001081150, intron 11 of 11)	31674	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding
diff_RLAGL_Vector_cond1_5911	chr2	148672179	148672961	+	12.66776	NA	promoter-TSS (NM_001110159)	promoter-TSS (NM_001110159)	-45	NM_019761	56488	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding
diff_RLAGL_Vector_cond1_10527	chrX	113297945	113298373	+	12.66506	NA	promoter-TSS (NM_033605)	promoter-TSS (NM_033605)	-97	NM_033605	93837	Mm.79760	NM_033605	ENSMUSG00000025592	Dach2	9430028N04Rik	dachshund 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9791	chr8	114882202	114882414	+	12.66439	NA	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	442656	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding
diff_RLAGL_Vector_cond1_7899	chr5	108703819	108704146	+	12.65593	NA	intron (NM_054071, intron 3 of 6)	intron (NM_054071, intron 3 of 6)	9753	NM_054071	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding
diff_RLAGL_Vector_cond1_10535	chrX	122480830	122481255	+	12.65586	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-83657	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding
diff_RLAGL_Vector_cond1_4559	chr17	68003841	68004619	+	12.65287	NA	promoter-TSS (NM_172964)	promoter-TSS (NM_172964)	-122	NM_172964	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding
diff_RLAGL_Vector_cond1_7921	chr5	111911090	111911496	+	12.64369	NA	Intergenic	Intergenic	-149565	NR_045833	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA
diff_RLAGL_Vector_cond1_8351	chr6	58304516	58304792	+	12.64297	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-2643	NM_053232	113859	Mm.377156	NM_053232	ENSMUSG00000091734	Vmn1r29	V1rc2	vomeronasal 1 receptor 29	protein-coding
diff_RLAGL_Vector_cond1_4462	chr17	48312161	48312451	+	12.64242	NA	3' UTR (NM_001033405, exon 5 of 5)	3' UTR (NM_001033405, exon 5 of 5)	-3856	NM_177083	320148	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding
diff_RLAGL_Vector_cond1_5428	chr2	45234134	45234554	+	12.63375	NA	Intergenic	Intergenic	-121065	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_3769	chr15	92801732	92801951	+	12.62872	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	204732	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
diff_RLAGL_Vector_cond1_580	chr1	153274679	153274987	+	12.62505	NA	intron (NM_010683, intron 1 of 27)	intron (NM_010683, intron 1 of 27)	57953	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_9915	chr9	13296500	13296807	+	12.62306	NA	Intergenic	Intergenic	49674	NM_025534	66396	Mm.290620	NM_025534		Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding
diff_RLAGL_Vector_cond1_9133	chr7	95283808	95284007	+	12.61918	NA	Intergenic	L2a|LINE|L2	-887337	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
diff_RLAGL_Vector_cond1_90	chr1	23255915	23256981	+	12.61791	NA	Intergenic	CpG	-15821	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA
diff_RLAGL_Vector_cond1_5401	chr2	33701492	33702002	+	12.61375	NA	Intergenic	Intergenic	60554	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA
diff_RLAGL_Vector_cond1_7867	chr5	102593896	102594134	+	12.61368	NA	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	112624	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
diff_RLAGL_Vector_cond1_5302	chr2	15188139	15188486	+	12.60953	NA	Intergenic	Intergenic	132950	NM_029466	75869	Mm.174068	NM_029466		Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding
diff_RLAGL_Vector_cond1_6580	chr3	125986634	125987010	+	12.59960	NA	Intergenic	Intergenic	-48272	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding
diff_RLAGL_Vector_cond1_479	chr1	131200027	131200350	+	12.59491	NA	promoter-TSS (NM_001311094)	promoter-TSS (NM_001311094)	-3	NM_001311094	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding
diff_RLAGL_Vector_cond1_9661	chr8	81767421	81767789	+	12.58778	NA	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	425043	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding
diff_RLAGL_Vector_cond1_9534	chr8	53511582	53512213	+	12.58410	NA	exon (NM_001205054, exon 1 of 9)	exon (NM_001205054, exon 1 of 9)	195	NM_001005847	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding
diff_RLAGL_Vector_cond1_5297	chr2	14841370	14841659	+	12.58383	NA	intron (NM_001252533, intron 1 of 12)	tRNA-Met|tRNA|tRNA	17422	NM_001252533	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding
diff_RLAGL_Vector_cond1_9294	chr7	138357113	138357615	+	12.57428	NA	intron (NM_183289, intron 4 of 11)	intron (NM_183289, intron 4 of 11)	40366	NM_183289	70571	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding
diff_RLAGL_Vector_cond1_7847	chr5	98019443	98019726	+	12.55610	NA	intron (NM_133738, intron 3 of 16)	Lx8|LINE|L1	11378	NM_133738	71914	Mm.24842	NM_133738		Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding
diff_RLAGL_Vector_cond1_3965	chr16	39706219	39706841	+	12.55000	NA	Intergenic	Intergenic	804185	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
diff_RLAGL_Vector_cond1_1031	chr10	45816525	45817038	+	12.54592	NA	intron (NR_040624, intron 1 of 2)	RLTR26B_MM|LTR|ERVK	9077	NR_040624	320363	Mm.123343	NR_040624		D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA
diff_RLAGL_Vector_cond1_2411	chr12	104143393	104143741	+	12.54181	NA	Intergenic	Intergenic	10305	NM_008458	16625	Mm.422814	NM_008458		Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding
diff_RLAGL_Vector_cond1_6975	chr4	51683399	51683629	+	12.53714	NA	Intergenic	RLTR9D|LTR|ERVK	367596	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA
diff_RLAGL_Vector_cond1_5719	chr2	114654371	114655242	+	12.53459	NA	intron (NM_025675, intron 1 of 8)	CpG	122	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
diff_RLAGL_Vector_cond1_4582	chr17	72132179	72132892	+	12.53144	NA	intron (NM_007439, intron 4 of 28)	L1MEc|LINE|L1	350588	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding
diff_RLAGL_Vector_cond1_9366	chr8	8833948	8834218	+	12.53107	NA	Intergenic	Intergenic	-143546	NM_176849	234023	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding
diff_RLAGL_Vector_cond1_618	chr1	161968953	161969302	+	12.52877	NA	promoter-TSS (NM_001039045)	promoter-TSS (NM_001039045)	21	NM_001204905	75368	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding
diff_RLAGL_Vector_cond1_5588	chr2	83644261	83644627	+	12.52748	NA	promoter-TSS (NM_026934)	promoter-TSS (NM_026934)	-134	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
diff_RLAGL_Vector_cond1_4931	chr18	67350707	67350969	+	12.52287	NA	intron (NM_007702, intron 1 of 4)	intron (NM_007702, intron 1 of 4)	-6735	NR_033214	338360	Mm.441590	NR_033214	ENSMUSG00000046415	B430212C06Rik	-	RIKEN cDNA B430212C06 gene	ncRNA
diff_RLAGL_Vector_cond1_6782	chr3	159885052	159885596	+	12.52255	NA	intron (NR_037590, intron 3 of 12)	intron (NR_037590, intron 3 of 12)	45629	NM_026582	68151	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|Gpr177	wntless homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_167	chr1	45917177	45917767	+	12.51564	NA	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	8122	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding
diff_RLAGL_Vector_cond1_5034	chr18	88751864	88752423	+	12.51142	NA	Intergenic	Intergenic	142064	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
diff_RLAGL_Vector_cond1_305	chr1	82283037	82283535	+	12.50343	NA	intron (NM_010570, intron 1 of 1)	CpG	8153	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding
diff_RLAGL_Vector_cond1_1940	chr11	113221420	113221683	+	12.49917	NA	Intergenic	Intergenic	-11882	NR_040276	319871	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA
diff_RLAGL_Vector_cond1_5589	chr2	83648968	83649190	+	12.49691	NA	intron (NM_026934, intron 1 of 9)	intron (NM_026934, intron 1 of 9)	4501	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
diff_RLAGL_Vector_cond1_7992	chr5	130063774	130063975	+	12.49493	NA	Intergenic	Intergenic	-9452	NM_013837	22021	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_7189	chr4	106870688	106870952	+	12.48229	NA	Intergenic	Intergenic	-40650	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_7168	chr4	102446376	102446959	+	12.48206	NA	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	-123393	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding
diff_RLAGL_Vector_cond1_10272	chr9	105139105	105139490	+	12.48110	NA	Intergenic	Intergenic	5785	NM_028562	73532	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding
diff_RLAGL_Vector_cond1_881	chr10	11172548	11172847	+	12.47728	NA	intron (NM_172937, intron 14 of 27)	intron (NM_172937, intron 14 of 27)	23267	NM_001284354	268281	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding
diff_RLAGL_Vector_cond1_9044	chr7	70429376	70429681	+	12.47377	NA	Intergenic	Intergenic	-62782	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding
diff_RLAGL_Vector_cond1_3665	chr15	67474377	67474653	+	12.46009	NA	Intergenic	Lx10|LINE|L1	247746	NR_045140	69334	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA
diff_RLAGL_Vector_cond1_6209	chr3	21553489	21553752	+	12.45689	NA	Intergenic	Intergenic	-523032	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_2679	chr13	53472757	53472962	+	12.44442	NA	promoter-TSS (NM_013601)	promoter-TSS (NM_013601)	-79	NM_013601	17702	Mm.1763	NM_013601	ENSMUSG00000021469	Msx2	BB122635|Hox-8|Hox8|Hox8.1	msh homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_3805	chr15	99260201	99260403	+	12.44264	NA	intron (NR_045627, intron 1 of 2)	L2|LINE|L2	-8341	NM_016766	51812	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding
diff_RLAGL_Vector_cond1_8799	chr7	4876735	4877042	+	12.44072	NA	promoter-TSS (NM_001101598)	promoter-TSS (NM_001101598)	-165	NM_001101598	664994	Mm.302624	NM_001101598	ENSMUSG00000086784	Isoc2a	Isoc2	isochorismatase domain containing 2a	protein-coding
diff_RLAGL_Vector_cond1_452	chr1	120231456	120231772	+	12.41308	NA	intron (NM_001085409, intron 5 of 5)	intron (NM_001085409, intron 5 of 5)	33666	NM_133186	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding
diff_RLAGL_Vector_cond1_1323	chr10	108384294	108384694	+	12.41051	NA	intron (NM_054056, intron 3 of 6)	intron (NM_054056, intron 3 of 6)	52305	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding
diff_RLAGL_Vector_cond1_5808	chr2	134845061	134845324	+	12.40770	NA	intron (NM_019677, intron 2 of 32)	intron (NM_019677, intron 2 of 32)	59028	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding
diff_RLAGL_Vector_cond1_4492	chr17	55445428	55446396	+	12.40247	NA	intron (NM_172829, intron 1 of 4)	CpG	195	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_1076	chr10	59616758	59617001	+	12.40007	NA	promoter-TSS (NM_001033259)	promoter-TSS (NM_001033259)	-187	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding
diff_RLAGL_Vector_cond1_2492	chr12	118301891	118302415	+	12.38833	NA	promoter-TSS (NM_001166385)	promoter-TSS (NM_001166385)	-713	NM_001166385	20688	Mm.34699	NM_009239		Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding
diff_RLAGL_Vector_cond1_7059	chr4	74847381	74847635	+	12.38463	NA	Intergenic	Lx8b|LINE|L1	430778	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
diff_RLAGL_Vector_cond1_4184	chr16	89525633	89525864	+	12.37867	NA	Intergenic	Intergenic	-17425	NM_027771	71363	Mm.158680	NM_027771	ENSMUSG00000056706	Krtap7-1	5430433J05Rik	keratin associated protein 7-1	protein-coding
diff_RLAGL_Vector_cond1_9353	chr8	6051688	6052331	+	12.37810	NA	Intergenic	Intergenic	-946777	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
diff_RLAGL_Vector_cond1_9529	chr8	48603348	48603778	+	12.37713	NA	intron (NM_011857, intron 2 of 28)	intron (NM_011857, intron 2 of 28)	71127	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_3004	chr14	12731001	12731308	+	12.37439	NA	intron (NM_012061, intron 1 of 28)	intron (NM_012061, intron 1 of 28)	91925	NM_012061	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding
diff_RLAGL_Vector_cond1_9902	chr9	8004116	8004339	+	12.36556	NA	exon (NM_009534, exon 1 of 8)	exon (NM_009534, exon 1 of 8)	369	NM_009534	22601	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_3121	chr14	49290083	49290635	+	12.35969	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-44931	NM_025956	67082	Mm.87439	NM_025956	ENSMUSG00000021850	1700011H14Rik	-	RIKEN cDNA 1700011H14 gene	protein-coding
diff_RLAGL_Vector_cond1_3352	chr14	115092077	115092513	+	12.35742	NA	promoter-TSS (NM_175500)	promoter-TSS (NM_175500)	80	NM_175500	103978	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding
diff_RLAGL_Vector_cond1_9273	chr7	133116652	133116891	+	12.35639	NA	intron (NM_009980, intron 1 of 10)	intron (NM_009980, intron 1 of 10)	6712	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_3551	chr15	43869855	43870154	+	12.35510	NA	promoter-TSS (NM_175502)	promoter-TSS (NM_175502)	25	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding
diff_RLAGL_Vector_cond1_2491	chr12	118301015	118301724	+	12.35030	NA	promoter-TSS (NM_001166385)	promoter-TSS (NM_001166385)	71	NM_009239	20688	Mm.34699	NM_009239		Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding
diff_RLAGL_Vector_cond1_946	chr10	27595721	27596128	+	12.34697	NA	intron (NM_008481, intron 1 of 63)	intron (NM_008481, intron 1 of 63)	21018	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding
diff_RLAGL_Vector_cond1_4697	chr17	91996465	91996924	+	12.34254	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-903892	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
diff_RLAGL_Vector_cond1_4977	chr18	77185599	77185946	+	12.34123	NA	promoter-TSS (NM_153124)	promoter-TSS (NM_153124)	-75	NM_153124	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding
diff_RLAGL_Vector_cond1_5308	chr2	17531799	17532195	+	12.33672	NA	intron (NM_028757, intron 3 of 6)	A-rich|Low_complexity|Low_complexity	-31517	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA
diff_RLAGL_Vector_cond1_4694	chr17	91238680	91239113	+	12.32037	NA	Intergenic	MERVL_2A-int|LTR|ERVL	-146094	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
diff_RLAGL_Vector_cond1_470	chr1	129915527	129915827	+	12.31591	NA	exon (NM_172485, exon 13 of 28)	exon (NM_172485, exon 13 of 28)	507322	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding
diff_RLAGL_Vector_cond1_7857	chr5	101365434	101365682	+	12.30883	NA	Intergenic	Intergenic	299153	NM_144955	18096	Mm.193072	NM_144955		Nkx6-1	NKX6A|Nkx6.1	NK6 homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_472	chr1	129956640	129957045	+	12.30240	NA	intron (NM_172485, intron 15 of 27)	intron (NM_172485, intron 15 of 27)	466157	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding
diff_RLAGL_Vector_cond1_6499	chr3	101806215	101806446	+	12.29729	NA	Intergenic	Intergenic	29893	NM_172295	242125	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_5339	chr2	22105172	22105673	+	12.29664	NA	Intergenic	Intergenic	-122081	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding
diff_RLAGL_Vector_cond1_2853	chr13	86393286	86393774	+	12.28622	NA	Intergenic	Lx10|LINE|L1	-346735	NM_007749	12867	Mm.378898	NM_007749		Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding
diff_RLAGL_Vector_cond1_2558	chr13	13438589	13438858	+	12.28014	NA	intron (NM_010917, intron 1 of 19)	intron (NM_010917, intron 1 of 19)	1121	NM_010917	18073	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding
diff_RLAGL_Vector_cond1_6973	chr4	51600108	51600459	+	12.27090	NA	Intergenic	Intergenic	383605	NM_001162865	74914	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding
diff_RLAGL_Vector_cond1_3386	chr14	121761858	121762177	+	12.26891	NA	intron (NM_134074, intron 1 of 52)	intron (NM_134074, intron 1 of 52)	-23088	NM_001128307	105445	Mm.441054	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding
diff_RLAGL_Vector_cond1_10425	chrX	47000672	47000978	+	12.26816	NA	Intergenic	Intergenic	671818	NM_028514	73360	Mm.60929	NM_028514	ENSMUSG00000046615	Actrt1	1700061J02Rik|Arp-T1	actin-related protein T1	protein-coding
diff_RLAGL_Vector_cond1_8300	chr6	46861148	46861533	+	12.26476	NA	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-383056	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_5306	chr2	16034471	16034728	+	12.26456	NA	intron (NM_001310455, intron 29 of 38)	intron (NM_001310455, intron 29 of 38)	-321705	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_8033	chr5	135545081	135545735	+	12.26036	NA	promoter-TSS (NM_146001)	promoter-TSS (NM_146001)	-286	NM_146001	215114	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_795	chr1	190408527	190408769	+	12.25872	NA	Intergenic	Intergenic	-237968	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_7883	chr5	104138043	104138463	+	12.25494	NA	Intergenic	Intergenic	-24165	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding
diff_RLAGL_Vector_cond1_8578	chr6	116644418	116644635	+	12.25399	NA	intron (NM_178045, intron 6 of 10)	intron (NM_178045, intron 6 of 10)	1521	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA
diff_RLAGL_Vector_cond1_9156	chr7	102686911	102687522	+	12.24984	NA	5' UTR (NM_198012, exon 1 of 7)	5' UTR (NM_198012, exon 1 of 7)	111	NM_001307998	101700	Mm.39043	NM_198012	ENSMUSG00000073968	Trim68	AI894158|F730114J12Rik|Rnf137|SS-56	tripartite motif-containing 68	protein-coding
diff_RLAGL_Vector_cond1_2672	chr13	51918871	51919294	+	12.24936	NA	Intergenic	Intergenic	72407	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding
diff_RLAGL_Vector_cond1_8368	chr6	62668204	62668511	+	12.24590	NA	Intergenic	RLTR1A2_MM|LTR|ERV1	-588500	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
diff_RLAGL_Vector_cond1_3240	chr14	79771223	79771500	+	12.24554	NA	promoter-TSS (NM_021543)	promoter-TSS (NM_021543)	-49	NM_021543	18530	Mm.390715	NM_021543	ENSMUSG00000036422	Pcdh8	1700080P15Rik|Papc	protocadherin 8	protein-coding
diff_RLAGL_Vector_cond1_2307	chr12	73206232	73206548	+	12.24067	NA	intron (NM_008612, intron 6 of 7)	intron (NM_008612, intron 6 of 7)	80321	NM_029580	76357	Mm.311344	NM_029580	ENSMUSG00000034442	Trmt5	2610027O18Rik|mKIAA1393	TRM5 tRNA methyltransferase 5	protein-coding
diff_RLAGL_Vector_cond1_468	chr1	128593025	128593312	+	12.23843	NA	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-869	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding
diff_RLAGL_Vector_cond1_7181	chr4	106020012	106020214	+	12.23828	NA	Intergenic	Intergenic	-296100	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding
diff_RLAGL_Vector_cond1_1329	chr10	110922703	110923139	+	12.23544	NA	intron (NM_007792, intron 1 of 5)	intron (NM_007792, intron 1 of 5)	2745	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding
diff_RLAGL_Vector_cond1_4308	chr17	21845612	21846008	+	12.23261	NA	promoter-TSS (NM_029281)	promoter-TSS (NM_029281)	-51	NM_029281	75424	Mm.271252	NM_029281	ENSMUSG00000069743	Zfp820	2610036F08Rik	zinc finger protein 820	protein-coding
diff_RLAGL_Vector_cond1_7084	chr4	82594328	82594572	+	12.23174	NA	Intergenic	Intergenic	-88671	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding
diff_RLAGL_Vector_cond1_8063	chr5	139353501	139353820	+	12.21983	NA	intron (NM_001160265, intron 1 of 8)	intron (NM_001160265, intron 1 of 8)	1043	NM_001160265	545817	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_9451	chr8	33385217	33385764	+	12.21693	NA	promoter-TSS (NM_001122822)	promoter-TSS (NM_001122822)	37	NM_001122822	22427	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome homolog (human)	protein-coding
diff_RLAGL_Vector_cond1_3427	chr15	6375038	6375583	+	12.21487	NA	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-11438	NM_001037905	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
diff_RLAGL_Vector_cond1_3452	chr15	9435680	9436168	+	12.19517	NA	promoter-TSS (NM_029341)	promoter-TSS (NM_029341)	-104	NM_029341	75568	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding
diff_RLAGL_Vector_cond1_9657	chr8	80482233	80482433	+	12.19074	NA	Intergenic	Intergenic	-11712	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding
diff_RLAGL_Vector_cond1_1244	chr10	89946733	89947503	+	12.18910	NA	intron (NM_001128086, intron 1 of 24)	MTC|LTR|ERVL-MaLR	73609	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_4816	chr18	35830071	35830368	+	12.18900	NA	intron (NM_133687, intron 1 of 2)	CpG	401	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding
diff_RLAGL_Vector_cond1_7540	chr5	14514600	14515540	+	12.18863	NA	5' UTR (NM_011995, exon 1 of 25)	5' UTR (NM_011995, exon 1 of 25)	152	NM_011995	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding
diff_RLAGL_Vector_cond1_2542	chr13	10394458	10394750	+	12.18477	NA	Intergenic	Intergenic	-33801	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding
diff_RLAGL_Vector_cond1_2256	chr12	56952248	56952616	+	12.18060	NA	intron (NM_172577, intron 1 of 9)	intron (NM_172577, intron 1 of 9)	208211	NM_001167976	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding
diff_RLAGL_Vector_cond1_3347	chr14	111674733	111675010	+	12.17527	NA	promoter-TSS (NM_198865)	promoter-TSS (NM_198865)	-244	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding
diff_RLAGL_Vector_cond1_1375	chr10	119447996	119448252	+	12.17308	NA	Intergenic	L1MA4A|LINE|L1	-5910	NM_001277293	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_2131	chr12	25309251	25309602	+	12.17095	NA	Intergenic	Intergenic	180252	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA
diff_RLAGL_Vector_cond1_1026	chr10	44862253	44862559	+	12.16855	NA	Intergenic	Intergenic	-204808	NM_011156	19072	Mm.37294	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding
diff_RLAGL_Vector_cond1_63	chr1	17097202	17098225	+	12.16817	NA	5' UTR (NM_020604, exon 1 of 5)	5' UTR (NM_020604, exon 1 of 5)	176	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding
diff_RLAGL_Vector_cond1_8231	chr6	25808931	25809549	+	12.16570	NA	promoter-TSS (NM_133931)	promoter-TSS (NM_133931)	-14	NM_133931	101185	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding
diff_RLAGL_Vector_cond1_10305	chr9	111644350	111644554	+	12.15876	NA	intron (NM_016853, intron 1 of 10)	intron (NM_016853, intron 1 of 10)	45764	NM_016853	20840	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding
diff_RLAGL_Vector_cond1_4469	chr17	48936797	48937090	+	12.15468	NA	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	4361	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_2281	chr12	67127497	67127812	+	12.14884	NA	intron (NM_207010, intron 1 of 15)	intron (NM_207010, intron 1 of 15)	94895	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
diff_RLAGL_Vector_cond1_9841	chr8	122635790	122636319	+	12.13619	NA	intron (NM_009824, intron 7 of 11)	intron (NM_009824, intron 7 of 11)	-13319	NM_001007462	382035	Mm.25449	NM_001007462	ENSMUSG00000069867	Pabpn1l	Gm1108|Pabpnl1|ePABP2	poly(A)binding protein nuclear 1-like	protein-coding
diff_RLAGL_Vector_cond1_4705	chr17	93772519	93772863	+	12.12470	NA	Intergenic	Intergenic	573523	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_10261	chr9	103759022	103759269	+	12.12466	NA	intron (NM_178638, intron 1 of 5)	intron (NM_178638, intron 1 of 5)	2692	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding
diff_RLAGL_Vector_cond1_5770	chr2	126151896	126152471	+	12.10718	NA	promoter-TSS (NM_026981)	promoter-TSS (NM_026981)	42	NM_026981	69185	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1063	chr10	57485948	57486487	+	12.10177	NA	promoter-TSS (NM_008297)	promoter-TSS (NM_008297)	136	NR_045353	74928	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA
diff_RLAGL_Vector_cond1_5259	chr2	6720991	6721335	+	12.10102	NA	intron (NM_001310447, intron 1 of 11)	intron (NM_001310447, intron 1 of 11)	499	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
diff_RLAGL_Vector_cond1_2855	chr13	86857986	86858248	+	12.09985	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-811322	NM_007749	12867	Mm.378898	NM_007749		Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding
diff_RLAGL_Vector_cond1_2985	chr14	6658129	6658498	+	12.09584	NA	Intergenic	RLTR1F_Mm|LTR|ERVK	98744	NM_001309401	100041151	Mm.396155	NM_001309401		Gm3636	100042043	predicted gene 3636	protein-coding
diff_RLAGL_Vector_cond1_8713	chr6	139186073	139186749	+	12.09438	NA	Intergenic	Intergenic	136165	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA
diff_RLAGL_Vector_cond1_9732	chr8	96674577	96675065	+	12.07514	NA	Intergenic	Intergenic	-128848	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
diff_RLAGL_Vector_cond1_8412	chr6	78527431	78527644	+	12.07159	NA	Intergenic	L1_Mus3|LINE|L1	-58663	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515	regenerating islet-derived 3 gamma	protein-coding
diff_RLAGL_Vector_cond1_5438	chr2	46652684	46652969	+	12.05446	NA	Intergenic	Intergenic	956221	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
diff_RLAGL_Vector_cond1_6708	chr3	148225454	148225735	+	12.05188	NA	Intergenic	Intergenic	729041	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_6795	chr4	4635414	4635693	+	12.05157	NA	Intergenic	Intergenic	-106095	NM_001277919	622019	Mm.246123	NM_001277919		Gm11780	OTTMUSG00000004194	predicted gene 11780	protein-coding
diff_RLAGL_Vector_cond1_3397	chr14	122982665	122983781	+	12.04873	NA	promoter-TSS (NM_028651)	promoter-TSS (NM_028651)	38	NM_028651	70551	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding
diff_RLAGL_Vector_cond1_5142	chr19	32376845	32377367	+	12.04813	NA	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	11348	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding
diff_RLAGL_Vector_cond1_3568	chr15	47530093	47530340	+	12.04670	NA	Intergenic	RMER2|LTR|ERV1	906911	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA
diff_RLAGL_Vector_cond1_687	chr1	173639724	173639957	+	12.04472	NA	intron (NM_175026, intron 3 of 6)	RLTR13A|LTR|ERVK	8981	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Pyhin1	4930422C14|AI447904|Ifi209|Ifix	pyrin and HIN domain family, member 1	protein-coding
diff_RLAGL_Vector_cond1_7781	chr5	73193686	73193959	+	12.04460	NA	intron (NM_028194, intron 3 of 62)	intron (NM_028194, intron 3 of 62)	62796	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	furry homolog-like (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8997	chr7	58399027	58399652	+	12.03521	NA	Intergenic	tRNA-Glu-GAG_|tRNA|tRNA	-258863	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding
diff_RLAGL_Vector_cond1_4728	chr18	7256064	7256305	+	12.03494	NA	intron (NM_001081393, intron 11 of 20)	intron (NM_001081393, intron 11 of 20)	41717	NM_001081393	74934	Mm.107918	NM_001081393	ENSMUSG00000061802	Armc4	4930463I21Rik|b2b227.1Clo|b2b643Clo	armadillo repeat containing 4	protein-coding
diff_RLAGL_Vector_cond1_1828	chr11	93180602	93181192	+	12.02626	NA	intron (NM_028296, intron 1 of 8)	Lx7|LINE|L1	81607	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding
diff_RLAGL_Vector_cond1_6162	chr3	9833952	9834551	+	12.02608	NA	promoter-TSS (NM_001195031)	promoter-TSS (NM_001195031)	-572	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding
diff_RLAGL_Vector_cond1_10539	chrX	130281275	130281744	+	12.02388	NA	intron (NM_172493, intron 24 of 26)	intron (NM_172493, intron 24 of 26)	531767	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding
diff_RLAGL_Vector_cond1_5996	chr2	161108991	161109329	+	12.02069	NA	promoter-TSS (NR_126509)	promoter-TSS (NR_126509)	-74	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
diff_RLAGL_Vector_cond1_9485	chr8	40609859	40610358	+	12.01616	NA	intron (NM_001040699, intron 1 of 13)	IAPLTR2a|LTR|ERVK	24684	NM_001040699	54384	Mm.294871	NM_019433		Mtmr7	-	myotubularin related protein 7	protein-coding
diff_RLAGL_Vector_cond1_25	chr1	8283676	8283886	+	12.01590	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	1016096	NM_027671	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_4680	chr17	89963068	89963428	+	12.01455	NA	Intergenic	Intergenic	584007	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
diff_RLAGL_Vector_cond1_3553	chr15	44258079	44258364	+	12.00712	NA	Intergenic	MERV1_I-int|LTR|ERV1	62086	NM_013696	22045	Mm.309350	NM_013696	ENSMUSG00000038760	Trhr	TRH-R1	thyrotropin releasing hormone receptor	protein-coding
diff_RLAGL_Vector_cond1_898	chr10	14996421	14996728	+	12.00505	NA	Intergenic	RLTR11A2|LTR|ERVK	236285	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding
diff_RLAGL_Vector_cond1_9646	chr8	78813001	78813353	+	12.00397	NA	intron (NM_030145, intron 1 of 3)	intron (NM_030145, intron 1 of 3)	7975	NM_030145	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_701	chr1	176261555	176261768	+	12.00295	NA	intron (NM_176916, intron 1 of 9)	B3A|SINE|B2	13651	NM_176916	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding
diff_RLAGL_Vector_cond1_6489	chr3	100333527	100333792	+	11.99534	NA	Intergenic	RMER15|LTR|ERVL	-92746	NR_040543	73806	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA
diff_RLAGL_Vector_cond1_8058	chr5	138875621	138875824	+	11.99223	NA	Intergenic	MIRb|SINE|MIR	55642	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding
diff_RLAGL_Vector_cond1_7669	chr5	41887804	41888013	+	11.99014	NA	Intergenic	Intergenic	-3434	NR_105842	102465225		NR_105842	ENSMUSG00000098264	Mir6414	Gm27518|mmu-mir-6414	microRNA 6414	ncRNA
diff_RLAGL_Vector_cond1_4972	chr18	76021605	76021878	+	11.97912	NA	intron (NM_145356, intron 3 of 4)	ORR1D2|LTR|ERVL-MaLR	76730	NR_045365	73009	Mm.443541	NR_045365		2900057B20Rik	-	RIKEN cDNA 2900057B20 gene	ncRNA
diff_RLAGL_Vector_cond1_6171	chr3	14611140	14611343	+	11.97314	NA	promoter-TSS (NM_001099674)	promoter-TSS (NM_001099674)	15	NM_001099674	69126	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding
diff_RLAGL_Vector_cond1_10441	chrX	56374404	56374670	+	11.96467	NA	promoter-TSS (NR_028086)	promoter-TSS (NR_028086)	-49	NR_028086	320237	Mm.233168	NM_183030		Smim10l2a	6330419J24Rik|Ncrna00086	small integral membrane protein 10 like 2A	ncRNA
diff_RLAGL_Vector_cond1_1918	chr11	108241209	108241497	+	11.96313	NA	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	102535	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding
diff_RLAGL_Vector_cond1_8904	chr7	32392574	32392801	+	11.96116	NA	Intergenic	RLTR24|LTR|ERV1	-48854	NM_001256066	384589	Mm.454021	NM_001256066		Scgb1b29	Abpa29|Abpa29_a7|EG384589|Gm5326	secretoglobin, family 1B, member 29	protein-coding
diff_RLAGL_Vector_cond1_3797	chr15	96743335	96743765	+	11.94391	NA	Intergenic	Intergenic	-43852	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding
diff_RLAGL_Vector_cond1_9926	chr9	14561040	14561249	+	11.93340	NA	intron (NM_001081395, intron 7 of 12)	intron (NM_001081395, intron 7 of 12)	53856	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding
diff_RLAGL_Vector_cond1_9477	chr8	36613567	36614119	+	11.93315	NA	promoter-TSS (NM_015802)	promoter-TSS (NM_015802)	100	NM_015802	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding
diff_RLAGL_Vector_cond1_5100	chr19	17140351	17140750	+	11.92825	NA	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	184432	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4058	chr16	58727697	58728312	+	11.92651	NA	promoter-TSS (NM_001252451)	promoter-TSS (NM_001252451)	94	NM_001252451	224250	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7469	chr4	151861710	151862656	+	11.92400	NA	promoter-TSS (NM_001081557)	promoter-TSS (NM_001081557)	-415	NM_001195565	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding
diff_RLAGL_Vector_cond1_7694	chr5	46486982	46487304	+	11.91870	NA	Intergenic	Intergenic	-554734	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA
diff_RLAGL_Vector_cond1_10118	chr9	62857926	62858195	+	11.91798	NA	promoter-TSS (NM_138304)	promoter-TSS (NM_138304)	-44	NM_138304	75600	Mm.440576	NM_138304	ENSMUSG00000032246	Calml4	2010002G05Rik	calmodulin-like 4	protein-coding
diff_RLAGL_Vector_cond1_5649	chr2	101628704	101629227	+	11.91652	NA	promoter-TSS (NM_026592)	promoter-TSS (NM_026592)	21	NM_026592	68170	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding
diff_RLAGL_Vector_cond1_6881	chr4	23636231	23636931	+	11.91607	NA	Intergenic	Intergenic	-859881	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
diff_RLAGL_Vector_cond1_4030	chr16	52833880	52834145	+	11.91481	NA	Intergenic	Intergenic	-18268	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA
diff_RLAGL_Vector_cond1_1334	chr10	111298286	111299034	+	11.90969	NA	promoter-TSS (NM_027914)	promoter-TSS (NM_027914)	-19	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding
diff_RLAGL_Vector_cond1_4911	chr18	62322041	62322332	+	11.90909	NA	Intergenic	Intergenic	-2018	NM_008313	15562	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding
diff_RLAGL_Vector_cond1_5800	chr2	134214786	134215031	+	11.89637	NA	Intergenic	Intergenic	339444	NM_010403	15112	Mm.26634	NM_010403	ENSMUSG00000027261	Hao1	GOX|Gox1|Hao-1	hydroxyacid oxidase 1, liver	protein-coding
diff_RLAGL_Vector_cond1_6364	chr3	67373857	67374239	+	11.88281	NA	promoter-TSS (NM_001039543)	promoter-TSS (NM_001039543)	-49	NM_001039543	17349	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding
diff_RLAGL_Vector_cond1_129	chr1	35770738	35770971	+	11.88012	NA	Intergenic	Intergenic	-297546	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_876	chr10	9901962	9902241	+	11.87493	NA	Intergenic	Intergenic	-1061	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding
diff_RLAGL_Vector_cond1_9890	chr9	5828964	5829292	+	11.87409	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-339484	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding
diff_RLAGL_Vector_cond1_10359	chr9	121337670	121338096	+	11.86941	NA	Intergenic	Intergenic	-29075	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding
diff_RLAGL_Vector_cond1_10549	chrX	134303047	134303256	+	11.86596	NA	intron (NM_026239, intron 1 of 1)	intron (NM_026239, intron 1 of 1)	-4933	NM_001305631	102920	Mm.34903	NM_145924	ENSMUSG00000031262	Cenpi	CENP-I|Fshprh1	centromere protein I	protein-coding
diff_RLAGL_Vector_cond1_5158	chr19	40575474	40575981	+	11.86062	NA	intron (NM_153554, intron 6 of 18)	intron (NM_153554, intron 6 of 18)	12736	NM_153554	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding
diff_RLAGL_Vector_cond1_8759	chr6	144940645	144941278	+	11.85967	NA	Intergenic	Intergenic	107851	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding
diff_RLAGL_Vector_cond1_1344	chr10	112928630	112929361	+	11.85859	NA	promoter-TSS (NM_001033474)	promoter-TSS (NM_001033474)	31	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding
diff_RLAGL_Vector_cond1_5271	chr2	10272658	10273019	+	11.85682	NA	Intergenic	RLTR9D|LTR|ERVK	-97613	NM_001198808	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding
diff_RLAGL_Vector_cond1_6913	chr4	33491234	33491436	+	11.85538	NA	intron (NM_011884, intron 14 of 15)	intron (NM_011884, intron 14 of 15)	53254	NR_106198	102465904		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA
diff_RLAGL_Vector_cond1_9700	chr8	88635590	88636336	+	11.84985	NA	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	165	NM_027840	71607	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding
diff_RLAGL_Vector_cond1_4958	chr18	73504523	73504947	+	11.84648	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-67970	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 homolog C (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_10246	chr9	98601575	98601867	+	11.84070	NA	promoter-TSS (NM_025485)	promoter-TSS (NM_025485)	-42	NM_025485	64655	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding
diff_RLAGL_Vector_cond1_5184	chr19	46598820	46599170	+	11.83900	NA	promoter-TSS (NM_001177812)	promoter-TSS (NM_001177812)	-111	NM_146099	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding
diff_RLAGL_Vector_cond1_5528	chr2	66124601	66124929	+	11.83823	NA	promoter-TSS (NM_015736)	promoter-TSS (NM_015736)	28	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
diff_RLAGL_Vector_cond1_9306	chr7	140115580	140115918	+	11.83642	NA	intron (NM_053119, intron 1 of 7)	intron (NM_053119, intron 1 of 7)	674	NM_053119	93747	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_8897	chr7	30579995	30580210	+	11.83030	NA	exon (NM_029274, exon 16 of 37)	exon (NM_029274, exon 16 of 37)	8624	NM_001290573	75410	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding
diff_RLAGL_Vector_cond1_957	chr10	30678182	30678456	+	11.82908	NA	intron (NM_172495, intron 10 of 15)	intron (NM_172495, intron 10 of 15)	-22452	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding
diff_RLAGL_Vector_cond1_3417	chr15	4079529	4080122	+	11.82542	NA	intron (NM_024188, intron 7 of 16)	intron (NM_024188, intron 7 of 16)	-52419	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA
diff_RLAGL_Vector_cond1_2544	chr13	11549224	11549478	+	11.82337	NA	Intergenic	RLTR1F_Mm|LTR|ERVK	27299	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo
diff_RLAGL_Vector_cond1_5871	chr2	142902863	142903409	+	11.81406	NA	non-coding (NR_131921, exon 1 of 2)	non-coding (NR_131921, exon 1 of 2)	171	NR_131921	75053	Mm.72638	NR_131921		Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_8132	chr6	3436151	3436429	+	11.80823	NA	Intergenic	Intergenic	-36719	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding
diff_RLAGL_Vector_cond1_9127	chr7	92025527	92026123	+	11.80785	NA	intron (NM_011807, intron 10 of 22)	Lx8b|LINE|L1	-36569	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9696	chr8	88443453	88443824	+	11.80776	NA	Intergenic	B4A|SINE|B4	-77706	NM_027280	93960	Mm.30219	NM_027280	ENSMUSG00000031661	Nkd1	2810434J10Rik|9030215G15Rik|Nkd	naked cuticle 1 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8981	chr7	49957267	49957502	+	11.79966	NA	intron (NM_001146013, intron 15 of 15)	MTD|LTR|ERVL-MaLR	-17966	NM_001037906	338352	Mm.383528	NM_001037906	ENSMUSG00000055409	Nell1	B230343H07Rik|l7R6	NEL-like 1	protein-coding
diff_RLAGL_Vector_cond1_7870	chr5	102825547	102825880	+	11.79797	NA	intron (NM_001286468, intron 1 of 7)	intron (NM_001286468, intron 1 of 7)	56903	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
diff_RLAGL_Vector_cond1_6105	chr2	178118017	178118225	+	11.79295	NA	promoter-TSS (NM_001177790)	promoter-TSS (NM_001177790)	-854	NM_001177790	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding
diff_RLAGL_Vector_cond1_3563	chr15	44787643	44788124	+	11.78498	NA	exon (NM_176998, exon 1 of 8)	exon (NM_176998, exon 1 of 8)	120	NR_040309	69659	Mm.352401	NR_040309	ENSMUSG00000097102	2310069G16Rik	-	RIKEN cDNA 2310069G16 gene	ncRNA
diff_RLAGL_Vector_cond1_10385	chr9	124312418	124312828	+	11.78322	NA	promoter-TSS (NM_001243119)	promoter-TSS (NM_001243119)	71	NM_001243117	630836	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding
diff_RLAGL_Vector_cond1_4093	chr16	68676540	68676792	+	11.78205	NA	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-1055758	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_1533	chr11	20396401	20396647	+	11.78060	NA	Intergenic	Intergenic	-63811	NM_018861	55963	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding
diff_RLAGL_Vector_cond1_683	chr1	173249833	173250265	+	11.77961	NA	Intergenic	MT2B2|LTR|ERVL	-20098	NM_146651	258645	Mm.377611	NM_146651	ENSMUSG00000049605	Olfr418	MOR267-12P|MOR267-8|Olfr1403|Olfr418-ps1	olfactory receptor 418	protein-coding
diff_RLAGL_Vector_cond1_2181	chr12	36381894	36382347	+	11.77895	NA	promoter-TSS (NM_001289503)	promoter-TSS (NM_001289503)	-27	NM_001289503	75847	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding
diff_RLAGL_Vector_cond1_1006	chr10	39430761	39431068	+	11.77839	NA	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	61115	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_3060	chr14	28061757	28062143	+	11.77733	NA	intron (NM_177814, intron 11 of 15)	intron (NM_177814, intron 11 of 15)	439508	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding
diff_RLAGL_Vector_cond1_4595	chr17	74810916	74811199	+	11.77591	NA	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	93307	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding
diff_RLAGL_Vector_cond1_7682	chr5	44497036	44497312	+	11.77408	NA	intron (NM_001077398, intron 5 of 8)	intron (NM_001077398, intron 5 of 8)	-270568	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding
diff_RLAGL_Vector_cond1_4420	chr17	42603486	42603776	+	11.77401	NA	intron (NM_181753, intron 2 of 6)	intron (NM_181753, intron 2 of 6)	7682	NM_181753	353344	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding
diff_RLAGL_Vector_cond1_1451	chr10	130541849	130542385	+	11.77391	NA	Intergenic	Intergenic	-44738	NM_001103366	625131	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding
diff_RLAGL_Vector_cond1_2294	chr12	71015431	71015979	+	11.77068	NA	promoter-TSS (NM_001081195)	promoter-TSS (NM_001081195)	118	NR_045055	73204	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA
diff_RLAGL_Vector_cond1_2790	chr13	69410405	69410700	+	11.76906	NA	Intergenic	Intergenic	123312	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_175	chr1	51243201	51243672	+	11.76632	NA	intron (NR_045151, intron 4 of 4)	intron (NR_045151, intron 4 of 4)	-45690	NM_138741	20324	Mm.398690	NM_138741	ENSMUSG00000045954	Sdpr	-	serum deprivation response	protein-coding
diff_RLAGL_Vector_cond1_7209	chr4	111687152	111687365	+	11.76302	NA	Intergenic	Intergenic	-32752	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding
diff_RLAGL_Vector_cond1_7685	chr5	44646018	44646227	+	11.76018	NA	intron (NM_001077398, intron 2 of 8)	intron (NM_001077398, intron 2 of 8)	153624	NM_010698	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding
diff_RLAGL_Vector_cond1_896	chr10	14056921	14057131	+	11.75937	NA	intron (NM_010437, intron 1 of 8)	intron (NM_010437, intron 1 of 8)	90647	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_344	chr1	88954868	88955210	+	11.74778	NA	Intergenic	Intergenic	-61074	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA
diff_RLAGL_Vector_cond1_8494	chr6	95117544	95117951	+	11.73369	NA	promoter-TSS (NM_001008785)	promoter-TSS (NM_001008785)	-133	NM_001102670	243574	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding
diff_RLAGL_Vector_cond1_2508	chr13	3258816	3259339	+	11.73037	NA	Intergenic	Intergenic	109602	NR_001581	73266	Mm.335891	NR_001581		Speer6-ps1	1700039A02Rik|SPEER-6	spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1	pseudo
diff_RLAGL_Vector_cond1_243	chr1	70180379	70180663	+	11.72659	NA	intron (NM_029160, intron 11 of 16)	intron (NM_029160, intron 11 of 16)	228906	NM_025728	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding
diff_RLAGL_Vector_cond1_1199	chr10	84331784	84331984	+	11.72471	NA	Intergenic	Intergenic	108587	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding
diff_RLAGL_Vector_cond1_8875	chr7	27408994	27409229	+	11.72396	NA	exon (NM_032610, exon 14 of 36)	exon (NM_032610, exon 14 of 36)	-12558	NM_001199236	80297	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding
diff_RLAGL_Vector_cond1_3486	chr15	25473328	25473534	+	11.72338	NA	Intergenic	Intergenic	59239	NR_027376	432939	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA
diff_RLAGL_Vector_cond1_7366	chr4	137698505	137698887	+	11.71970	NA	intron (NM_001081155, intron 2 of 24)	intron (NM_001081155, intron 2 of 24)	17029	NM_001081155	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding
diff_RLAGL_Vector_cond1_4710	chr18	3507641	3508110	+	11.71957	NA	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-82	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding
diff_RLAGL_Vector_cond1_2978	chr13	119661525	119661739	+	11.71872	NA	Intergenic	IAPEY4_LTR|LTR|ERVK	-18410	NR_045296	73480	Mm.71100	NR_045296	ENSMUSG00000099872	1700074H08Rik	CH25-211A23.1	RIKEN cDNA 1700074H08 gene	ncRNA
diff_RLAGL_Vector_cond1_4585	chr17	72836160	72836571	+	11.71776	NA	promoter-TSS (NM_027166)	promoter-TSS (NM_027166)	-339	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1929	chr11	109995096	109995340	+	11.71546	NA	intron (NM_013851, intron 1 of 38)	intron (NM_013851, intron 1 of 38)	598	NM_013851	27404	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding
diff_RLAGL_Vector_cond1_5675	chr2	105904226	105904930	+	11.69908	NA	promoter-TSS (NM_028260)	promoter-TSS (NM_028260)	-14	NM_023876	77766	Mm.3608	NM_023876		Elp4	A330107A17Rik|Paxneb	elongation protein 4 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1962	chr11	115843813	115844236	+	11.69418	NA	intron (NM_145438, intron 3 of 25)	intron (NM_145438, intron 3 of 25)	19966	NM_145438	217325	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	lethal giant larvae homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6381	chr3	69201204	69201452	+	11.68962	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-21091	NM_027843	71619	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding
diff_RLAGL_Vector_cond1_2302	chr12	72393501	72393716	+	11.68394	NA	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	15446	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding
diff_RLAGL_Vector_cond1_1501	chr11	11564101	11564319	+	11.68385	NA	Intergenic	Intergenic	63628	NM_001305143	102631730	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding
diff_RLAGL_Vector_cond1_6450	chr3	91053032	91053343	+	11.68282	NA	Intergenic	Intergenic	-18475	NR_033593	619677	Mm.396622	NR_033593	ENSMUSG00000086377	4930529C04Rik	-	zinc finger, BED domain containing 4 pseudogene	pseudo
diff_RLAGL_Vector_cond1_7893	chr5	107251855	107252061	+	11.68131	NA	intron (NM_011578, intron 2 of 16)	intron (NM_011578, intron 2 of 16)	37637	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding
diff_RLAGL_Vector_cond1_10030	chr9	39287198	39287445	+	11.68078	NA	TTS (NR_033620)	TTS (NR_033620)	12160	NR_033620	257924	Mm.261800	NR_033620		Olfr947-ps1	MOR171-43	olfactory receptor 947, pseudogene 1	pseudo
diff_RLAGL_Vector_cond1_10071	chr9	50396074	50396362	+	11.67767	NA	Intergenic	Intergenic	-98307	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding
diff_RLAGL_Vector_cond1_1986	chr11	117936293	117936649	+	11.67310	NA	Intergenic	Intergenic	32895	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding
diff_RLAGL_Vector_cond1_2534	chr13	8272184	8272449	+	11.66910	NA	intron (NM_001289530, intron 1 of 9)	intron (NM_001289530, intron 1 of 9)	69450	NR_110345	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
diff_RLAGL_Vector_cond1_10109	chr9	60501626	60502344	+	11.66852	NA	intron (NM_001040426, intron 1 of 17)	intron (NM_001040426, intron 1 of 17)	9050	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_5310	chr2	17812364	17812825	+	11.66844	NA	Intergenic	Intergenic	-81526	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding
diff_RLAGL_Vector_cond1_4064	chr16	59639062	59639738	+	11.66685	NA	promoter-TSS (NM_019665)	promoter-TSS (NM_019665)	-61	NM_019665	56297	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding
diff_RLAGL_Vector_cond1_9707	chr8	91133974	91134498	+	11.66281	NA	promoter-TSS (NM_001302268)	promoter-TSS (NM_001302268)	-209	NM_001302337	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_4154	chr16	85800657	85801006	+	11.65993	NA	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	2282	NM_009621	11504	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding
diff_RLAGL_Vector_cond1_9859	chr8	126790949	126791222	+	11.65156	NA	Intergenic	Intergenic	154836	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding
diff_RLAGL_Vector_cond1_7634	chr5	35237768	35238210	+	11.65081	NA	Intergenic	MLT2B3|LTR|ERVL	-40577	NM_007418	11553	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding
diff_RLAGL_Vector_cond1_4115	chr16	75926354	75926998	+	11.64864	NA	Intergenic	Lx8b|LINE|L1	-17410	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding
diff_RLAGL_Vector_cond1_4014	chr16	50528734	50529058	+	11.64669	NA	intron (NR_040379, intron 1 of 5)	CpG	394	NR_040379	619312	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA
diff_RLAGL_Vector_cond1_3275	chr14	98406359	98406741	+	11.64568	NA	Intergenic	Intergenic	-236785	NM_007826	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6550	chr3	116492037	116492370	+	11.64436	NA	intron (NM_025517, intron 10 of 10)	intron (NM_025517, intron 10 of 10)	15972	NM_025517	66368	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding
diff_RLAGL_Vector_cond1_6725	chr3	151881874	151882114	+	11.64256	NA	Intergenic	B2_Mm1a|SINE|B2	-44466	NM_008966	19220	Mm.331442	NM_008966		Ptgfr	AI957154|PGF|fp	prostaglandin F receptor	protein-coding
diff_RLAGL_Vector_cond1_3091	chr14	35943985	35944193	+	11.64123	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-132111	NM_001033766	239036	Mm.239970	NM_001033766	ENSMUSG00000041068	4930596D02Rik	-	RIKEN cDNA 4930596D02 gene	protein-coding
diff_RLAGL_Vector_cond1_9135	chr7	96705517	96705860	+	11.63770	NA	intron (NM_001310760, intron 8 of 32)	intron (NM_001310760, intron 8 of 32)	95861	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA
diff_RLAGL_Vector_cond1_1291	chr10	103443100	103443332	+	11.63556	NA	Intergenic	Intergenic	75408	NM_175328	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding
diff_RLAGL_Vector_cond1_428	chr1	114152882	114153383	+	11.63441	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-1532005	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
diff_RLAGL_Vector_cond1_4762	chr18	16435952	16436202	+	11.63198	NA	Intergenic	LTR78B|LTR|ERV1	373169	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding
diff_RLAGL_Vector_cond1_8165	chr6	8778441	8778646	+	11.63124	NA	promoter-TSS (NM_010492)	promoter-TSS (NM_010492)	-59	NM_010492	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding
diff_RLAGL_Vector_cond1_2809	chr13	73279259	73279481	+	11.62708	NA	Intergenic	Intergenic	18873	NM_018885	50916	Mm.103784	NM_018885	ENSMUSG00000021604	Irx4	-	Iroquois related homeobox 4 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9925	chr9	14559452	14559787	+	11.62595	NA	intron (NM_001081395, intron 7 of 12)	intron (NM_001081395, intron 7 of 12)	55381	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding
diff_RLAGL_Vector_cond1_5279	chr2	11853629	11853920	+	11.62323	NA	Intergenic	Intergenic	76021	NM_177268	320816	Mm.260201	NM_177268		Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding
diff_RLAGL_Vector_cond1_1821	chr11	90007719	90008076	+	11.62036	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-5003	NM_001316372	18559	Mm.5062	NM_008796		Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding
diff_RLAGL_Vector_cond1_5848	chr2	139873667	139874159	+	11.61527	NA	intron (NM_175225, intron 12 of 13)	MLTR18B_MM|LTR|ERVK	192892	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding
diff_RLAGL_Vector_cond1_1853	chr11	96977617	96977971	+	11.60994	NA	promoter-TSS (NM_001080964)	promoter-TSS (NM_001080964)	-106	NM_001080964	78912	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding
diff_RLAGL_Vector_cond1_9934	chr9	15513053	15513324	+	11.60920	NA	intron (NM_133214, intron 1 of 2)	intron (NM_133214, intron 1 of 2)	7693	NM_133214	170748	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding
diff_RLAGL_Vector_cond1_3291	chr14	100459038	100459347	+	11.59747	NA	Intergenic	Intergenic	-309396	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
diff_RLAGL_Vector_cond1_5648	chr2	101567554	101567820	+	11.59353	NA	intron (NM_026592, intron 6 of 6)	intron (NM_026592, intron 6 of 6)	-57061	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
diff_RLAGL_Vector_cond1_3131	chr14	51884697	51884975	+	11.59201	NA	promoter-TSS (NM_001029990)	promoter-TSS (NM_001029990)	-6	NM_001029990	52535	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding
diff_RLAGL_Vector_cond1_4684	chr17	90060202	90060649	+	11.58985	NA	intron (NM_020252, intron 21 of 22)	intron (NM_020252, intron 21 of 22)	681184	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
diff_RLAGL_Vector_cond1_2111	chr12	18609875	18610136	+	11.58819	NA	Intergenic	CpG	95495	NM_001201330	236366	Mm.352227	NM_001033157		5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding
diff_RLAGL_Vector_cond1_2392	chr12	102261807	102262337	+	11.58749	NA	intron (NM_172152, intron 14 of 16)	MLT1C|LTR|ERVL-MaLR	-21002	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding
diff_RLAGL_Vector_cond1_6974	chr4	51633405	51633813	+	11.58647	NA	Intergenic	RLTR19-int|LTR|ERVK	416931	NM_001162865	74914	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding
diff_RLAGL_Vector_cond1_5515	chr2	63106034	63106491	+	11.57880	NA	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	78025	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
diff_RLAGL_Vector_cond1_10387	chr9	124422527	124423417	+	11.57307	NA	promoter-TSS (NR_102721)	promoter-TSS (NR_102721)	-279	NR_027950	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA
diff_RLAGL_Vector_cond1_5684	chr2	108156169	108156715	+	11.56407	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	865853	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
diff_RLAGL_Vector_cond1_4018	chr16	51906737	51906999	+	11.55594	NA	Intergenic	Intergenic	-124681	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
diff_RLAGL_Vector_cond1_10430	chrX	49288214	49288521	+	11.55440	NA	promoter-TSS (NM_001271451)	promoter-TSS (NM_001271451)	-125	NM_001271448	209224	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding
diff_RLAGL_Vector_cond1_5699	chr2	110362808	110363025	+	11.55409	NA	promoter-TSS (NM_026271)	promoter-TSS (NM_026271)	77	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding
diff_RLAGL_Vector_cond1_8283	chr6	41605085	41605669	+	11.55321	NA	promoter-TSS (NM_007680)	promoter-TSS (NM_007680)	-105	NM_007680	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding
diff_RLAGL_Vector_cond1_6888	chr4	26214015	26214319	+	11.55021	NA	Intergenic	RMER20B|LTR|ERVK	132485	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding
diff_RLAGL_Vector_cond1_2601	chr13	25808795	25809155	+	11.54669	NA	Intergenic	Intergenic	157341	NR_045062	100503530	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	OTTMUSG00000000620	predicted gene 11351	ncRNA
diff_RLAGL_Vector_cond1_2575	chr13	18717133	18717453	+	11.54429	NA	promoter-TSS (NM_172120)	promoter-TSS (NM_172120)	1	NM_172120	218035	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	vacuolar protein sorting 41 (yeast)	protein-coding
diff_RLAGL_Vector_cond1_9633	chr8	76750337	76750674	+	11.54351	NA	non-coding (NR_028579, exon 2 of 2)	non-coding (NR_028579, exon 2 of 2)	149668	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
diff_RLAGL_Vector_cond1_4874	chr18	49755162	49755820	+	11.54087	NA	exon (NM_001170960, exon 1 of 4)	exon (NM_001170960, exon 1 of 4)	110	NM_026854	68857	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_3056	chr14	25846141	25846362	+	11.53968	NA	intron (NM_013469, intron 1 of 14)	B3|SINE|B2	4096	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding
diff_RLAGL_Vector_cond1_10069	chr9	48800610	48800942	+	11.53794	NA	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	35169	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding
diff_RLAGL_Vector_cond1_2797	chr13	70681864	70682267	+	11.53551	NA	Intergenic	MER31A|LTR|ERV1	-44431	NM_144837	218333	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
diff_RLAGL_Vector_cond1_5272	chr2	10825618	10826033	+	11.53460	NA	Intergenic	Intergenic	308221	NR_035417	100316668		NR_035417	ENSMUSG00000080657	Mir669i	Mirn669i|mir-669i|mmu-mir-669i	microRNA 669i	ncRNA
diff_RLAGL_Vector_cond1_5682	chr2	107273713	107274040	+	11.53459	NA	Intergenic	Intergenic	-16713	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
diff_RLAGL_Vector_cond1_2239	chr12	52644226	52644543	+	11.52542	NA	Intergenic	Intergenic	-42062	NR_045910	73278	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA
diff_RLAGL_Vector_cond1_356	chr1	91456446	91456751	+	11.52501	NA	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	2730	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding
diff_RLAGL_Vector_cond1_440	chr1	118878367	118878647	+	11.52283	NA	intron (NM_001081125, intron 3 of 13)	intron (NM_001081125, intron 3 of 13)	-75713	NR_105764	102465176		NR_105764	ENSMUSG00000098273	Mir6346	Gm27829|mmu-mir-6346	microRNA 6346	ncRNA
diff_RLAGL_Vector_cond1_5923	chr2	150310985	150311488	+	11.52250	NA	intron (NM_027017, intron 3 of 3)	intron (NM_027017, intron 3 of 3)	51529	NM_027017	69277	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding
diff_RLAGL_Vector_cond1_4286	chr17	17234417	17235157	+	11.52107	NA	Intergenic	Intergenic	113404	NM_011765	22759	Mm.436633	NM_011765	ENSMUSG00000095990	Zfp97	NGD16-4	zinc finger protein 97	protein-coding
diff_RLAGL_Vector_cond1_9905	chr9	8857562	8858225	+	11.51934	NA	Intergenic	Intergenic	-41940	NM_008829	18667	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|ENSMUSG00000074510|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding
diff_RLAGL_Vector_cond1_5987	chr2	160246151	160246689	+	11.51709	NA	Intergenic	Intergenic	81074	NM_001033411	329554	Mm.291144	NM_001033411		Gm826	-	predicted gene 826	protein-coding
diff_RLAGL_Vector_cond1_6187	chr3	19162992	19163308	+	11.51649	NA	promoter-TSS (NM_028840)	promoter-TSS (NM_028840)	-85	NM_028840	74252	Mm.200383	NM_028840		Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding
diff_RLAGL_Vector_cond1_9155	chr7	102565402	102565638	+	11.51352	NA	promoter-TSS (NM_001082552)	promoter-TSS (NM_001082552)	-38	NM_009277	20821	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding
diff_RLAGL_Vector_cond1_856	chr10	7140289	7140691	+	11.51099	NA	intron (NM_172546, intron 5 of 12)	intron (NM_172546, intron 5 of 12)	71747	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding
diff_RLAGL_Vector_cond1_5098	chr19	16955744	16956201	+	11.50887	NA	promoter-TSS (NM_181348)	promoter-TSS (NM_181348)	-146	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6592	chr3	127830310	127830549	+	11.50679	NA	intron (NM_145964, intron 1 of 9)	intron (NM_145964, intron 1 of 9)	7063	NM_145964	211556	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding
diff_RLAGL_Vector_cond1_703	chr1	176350521	176350788	+	11.50618	NA	Intergenic	Intergenic	-75342	NM_176916	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding
diff_RLAGL_Vector_cond1_4763	chr18	18476476	18477005	+	11.50564	NA	Intergenic	RLTR44B|LTR|ERVK	-895750	NR_045374	75162	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA
diff_RLAGL_Vector_cond1_6964	chr4	49041673	49042015	+	11.48655	NA	Intergenic	Intergenic	-17618	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding
diff_RLAGL_Vector_cond1_3051	chr14	25155112	25155370	+	11.48499	NA	Intergenic	Intergenic	-12000	NR_045718	75862	Mm.109191	NR_045718		4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA
diff_RLAGL_Vector_cond1_10140	chr9	67757004	67757271	+	11.48085	NA	Intergenic	Intergenic	-2300	NM_001081314	75697	Mm.105353	NM_001081314	ENSMUSG00000091956	C2cd4b	3300001A09Rik|Fam148b	C2 calcium-dependent domain containing 4B	protein-coding
diff_RLAGL_Vector_cond1_3433	chr15	6961442	6961641	+	11.47572	NA	Intergenic	Intergenic	-87228	NM_001310469	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding
diff_RLAGL_Vector_cond1_3699	chr15	76114545	76114852	+	11.47143	NA	intron (NM_144848, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	5497	NM_144848	223650	Mm.259929	NM_144848		Eppk1	6230424I18Rik|EPIPL|EPIPL1|EPPK	epiplakin 1	protein-coding
diff_RLAGL_Vector_cond1_9351	chr8	5859655	5859982	+	11.46463	NA	Intergenic	RLTR9D|LTR|ERVK	-754586	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
diff_RLAGL_Vector_cond1_8093	chr5	145642683	145642927	+	11.46367	NA	Intergenic	Intergenic	-58075	NM_017396	53973	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding
diff_RLAGL_Vector_cond1_2730	chr13	62382909	62383597	+	11.46308	NA	promoter-TSS (NM_001162910)	promoter-TSS (NM_001162910)	-79	NM_001162910	100041979	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding
diff_RLAGL_Vector_cond1_8902	chr7	31145613	31145964	+	11.46213	NA	intron (NM_027898, intron 1 of 18)	L2b|LINE|L2	5262	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding
diff_RLAGL_Vector_cond1_2069	chr12	11149756	11150001	+	11.45580	NA	intron (NM_001168564, intron 1 of 2)	intron (NM_001168564, intron 1 of 2)	495	NM_173417	238076	Mm.113278	NM_173417	ENSMUSG00000043673	Kcns3	-	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding
diff_RLAGL_Vector_cond1_4107	chr16	72921522	72921753	+	11.45543	NA	intron (NM_019413, intron 3 of 28)	intron (NM_019413, intron 3 of 28)	258488	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1933	chr11	111248299	111248606	+	11.45278	NA	Intergenic	Intergenic	182288	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
diff_RLAGL_Vector_cond1_4314	chr17	22225460	22226037	+	11.45228	NA	promoter-TSS (NM_001205095)	promoter-TSS (NM_001205095)	-134	NM_001205095	240038	Mm.227945	NM_001205095	ENSMUSG00000096433	Gm4944	EG240038	predicted gene 4944	protein-coding
diff_RLAGL_Vector_cond1_9445	chr8	31031695	31032333	+	11.45224	NA	Intergenic	Intergenic	-57648	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding
diff_RLAGL_Vector_cond1_9887	chr9	5332522	5332916	+	11.44949	NA	intron (NM_007609, intron 7 of 8)	intron (NM_007609, intron 7 of 8)	-12757	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding
diff_RLAGL_Vector_cond1_6300	chr3	54238895	54239311	+	11.44628	NA	intron (NM_016984, intron 3 of 10)	intron (NM_016984, intron 3 of 10)	83046	NM_001253683	22066	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding
diff_RLAGL_Vector_cond1_2043	chr12	5213410	5214068	+	11.44428	NA	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	161943	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding
diff_RLAGL_Vector_cond1_1240	chr10	89686206	89686760	+	11.43331	NA	promoter-TSS (NM_198021)	promoter-TSS (NM_198021)	120	NR_130956	69002	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA
diff_RLAGL_Vector_cond1_7476	chr4	153224613	153224833	+	11.42919	NA	Intergenic	Intergenic	258107	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_4120	chr16	76754868	76755112	+	11.42389	NA	Intergenic	Intergenic	255891	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA
diff_RLAGL_Vector_cond1_3189	chr14	67283374	67283673	+	11.42266	NA	intron (NM_001276387, intron 7 of 16)	intron (NM_001276387, intron 7 of 16)	31188	NM_001037931	628416	Mm.390723	NM_001037931		Gm6878	EG628416	predicted gene 6878	protein-coding
diff_RLAGL_Vector_cond1_7745	chr5	63755098	63755736	+	11.42244	NA	intron (NM_177006, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	-57078	NM_029554	76261	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding
diff_RLAGL_Vector_cond1_4214	chr16	95302999	95303218	+	11.42018	NA	Intergenic	Intergenic	45550	NM_001271693	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding
diff_RLAGL_Vector_cond1_6412	chr3	81494601	81494908	+	11.41991	NA	Intergenic	Intergenic	-437862	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
diff_RLAGL_Vector_cond1_4097	chr16	68951637	68952298	+	11.41902	NA	Intergenic	Intergenic	848414	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA
diff_RLAGL_Vector_cond1_7527	chr5	8045895	8046177	+	11.41164	NA	promoter-TSS (NM_025618)	promoter-TSS (NM_025618)	-42	NM_025618	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding
diff_RLAGL_Vector_cond1_247	chr1	71143398	71143823	+	11.40497	NA	Intergenic	Intergenic	-40638	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding
diff_RLAGL_Vector_cond1_534	chr1	139858616	139859130	+	11.40438	NA	promoter-TSS (NM_001025575)	promoter-TSS (NM_001025575)	-174	NM_001025575	545366	Mm.439660	NM_001025575	ENSMUSG00000033898	Cfhr2	Cfhrb_4/2	complement factor H-related 2	protein-coding
diff_RLAGL_Vector_cond1_3393	chr14	122574346	122574555	+	11.40012	NA	intron (NM_144844, intron 4 of 23)	intron (NM_144844, intron 4 of 23)	40122	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding
diff_RLAGL_Vector_cond1_7062	chr4	75819029	75819718	+	11.39110	NA	Intergenic	Intergenic	-541087	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
diff_RLAGL_Vector_cond1_8858	chr7	24112067	24112520	+	11.39089	NA	promoter-TSS (NM_021307)	promoter-TSS (NM_021307)	-27	NM_021307	57745	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding
diff_RLAGL_Vector_cond1_3734	chr15	84167570	84167907	+	11.37848	NA	promoter-TSS (NM_054088)	promoter-TSS (NM_054088)	-78	NM_054088	116939	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_3114	chr14	48022371	48022595	+	11.37799	NA	Intergenic	MTD|LTR|ERVL-MaLR	-98386	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding
diff_RLAGL_Vector_cond1_7131	chr4	95133818	95134140	+	11.37624	NA	Intergenic	Intergenic	-81757	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_9978	chr9	26999206	26999770	+	11.37135	NA	promoter-TSS (NM_144543)	promoter-TSS (NM_144543)	61	NM_025862	66948	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding
diff_RLAGL_Vector_cond1_2499	chr12	118855004	118855441	+	11.36429	NA	Intergenic	Intergenic	8893	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding
diff_RLAGL_Vector_cond1_9346	chr8	4839067	4839413	+	11.35197	NA	Intergenic	Intergenic	-59706	NM_011369	20419	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9588	chr8	66861123	66861350	+	11.35164	NA	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	1019	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_4040	chr16	56212741	56213085	+	11.34525	NA	intron (NM_174876, intron 2 of 19)	MTD|LTR|ERVL-MaLR	8600	NM_174876	224224	Mm.151998	NM_174876	ENSMUSG00000035270	Impg2	IPM200|PG10.2|Rsbp|Spacrcan	interphotoreceptor matrix proteoglycan 2	protein-coding
diff_RLAGL_Vector_cond1_3014	chr14	15603941	15604237	+	11.34048	NA	Intergenic	Intergenic	-165102	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding
diff_RLAGL_Vector_cond1_8552	chr6	112728716	112729258	+	11.33643	NA	intron (NM_080448, intron 20 of 21)	intron (NM_080448, intron 20 of 21)	-32317	NM_021385	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding
diff_RLAGL_Vector_cond1_5766	chr2	125247162	125247843	+	11.33575	NA	promoter-TSS (NM_023595)	promoter-TSS (NM_023595)	-13	NM_023595	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding
diff_RLAGL_Vector_cond1_8356	chr6	59132397	59132798	+	11.33354	NA	Intergenic	Intergenic	-76273	NM_001081145	68140	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding
diff_RLAGL_Vector_cond1_4488	chr17	53846328	53846546	+	11.33289	NA	promoter-TSS (NM_026935)	promoter-TSS (NM_026935)	-479	NM_026935	69083	Mm.19320	NM_026935		Sult1c2	1810008N17Rik|ST1C1|ST1C2|Sult1c1	sulfotransferase family, cytosolic, 1C, member 2	protein-coding
diff_RLAGL_Vector_cond1_6041	chr2	169482126	169482364	+	11.33240	NA	Intergenic	Intergenic	-151401	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
diff_RLAGL_Vector_cond1_6643	chr3	137156275	137156845	+	11.32993	NA	Intergenic	Intergenic	-184518	NM_016885	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding
diff_RLAGL_Vector_cond1_9392	chr8	15138719	15138930	+	11.32985	NA	Intergenic	Intergenic	81171	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding
diff_RLAGL_Vector_cond1_5220	chr19	55855555	55855794	+	11.32712	NA	intron (NM_001142919, intron 4 of 13)	intron (NM_001142919, intron 4 of 13)	-39647	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4|mTcf-4B|mTcf-4E	transcription factor 7 like 2, T cell specific, HMG box	protein-coding
diff_RLAGL_Vector_cond1_8641	chr6	128143480	128144124	+	11.32301	NA	promoter-TSS (NM_175414)	promoter-TSS (NM_175414)	-224	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding
diff_RLAGL_Vector_cond1_6392	chr3	74601455	74602095	+	11.32114	NA	Intergenic	Lx7|LINE|L1	541997	NM_172515	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding
diff_RLAGL_Vector_cond1_10601	chrX	161162651	161162958	+	11.31541	NA	promoter-TSS (NM_001290652)	promoter-TSS (NM_001290652)	54	NM_001290652	107815	Mm.159173	NM_133194	ENSMUSG00000000037	Scml2	4932420G07Rik	sex comb on midleg-like 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4691	chr17	91092777	91092997	+	11.31223	NA	promoter-TSS (NM_177284)	promoter-TSS (NM_177284)	-85	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
diff_RLAGL_Vector_cond1_1774	chr11	79157799	79158052	+	11.31217	NA	Intergenic	Intergenic	-11571	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding
diff_RLAGL_Vector_cond1_8742	chr6	143525179	143525413	+	11.31117	NA	Intergenic	Intergenic	125992	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA
diff_RLAGL_Vector_cond1_7101	chr4	85801890	85802138	+	11.30992	NA	Intergenic	Intergenic	-251901	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding
diff_RLAGL_Vector_cond1_6191	chr3	19664560	19664836	+	11.30760	NA	intron (NM_001081281, intron 4 of 9)	intron (NM_001081281, intron 4 of 9)	20238	NM_001081281	381485	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding
diff_RLAGL_Vector_cond1_3205	chr14	72709905	72710365	+	11.30252	NA	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	-132	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding
diff_RLAGL_Vector_cond1_4957	chr18	73426672	73427083	+	11.30101	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-145828	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 homolog C (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_7611	chr5	31713975	31714285	+	11.29957	NA	intron (NM_181281, intron 2 of 10)	Lx8|LINE|L1	16080	NM_181279	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding
diff_RLAGL_Vector_cond1_6759	chr3	155994096	155994562	+	11.29734	NA	intron (NR_040553, intron 2 of 4)	intron (NR_040553, intron 2 of 4)	17975	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
diff_RLAGL_Vector_cond1_176	chr1	51243949	51244228	+	11.29720	NA	intron (NR_045151, intron 4 of 4)	intron (NR_045151, intron 4 of 4)	-45038	NM_138741	20324	Mm.398690	NM_138741	ENSMUSG00000045954	Sdpr	-	serum deprivation response	protein-coding
diff_RLAGL_Vector_cond1_3651	chr15	65491534	65491751	+	11.29344	NA	Intergenic	RMER17A|LTR|ERVK	-295399	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_4275	chr17	15308431	15308873	+	11.29052	NA	Intergenic	Intergenic	45809	NR_033511	100038481	Mm.387544	NR_033511		Gm10510	ENSMUSG00000073453	predicted gene 10510	ncRNA
diff_RLAGL_Vector_cond1_3717	chr15	79062798	79063188	+	11.28581	NA	promoter-TSS (NM_144849)	promoter-TSS (NM_144849)	-134	NM_144849	223690	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding
diff_RLAGL_Vector_cond1_9980	chr9	27299000	27299401	+	11.28070	NA	promoter-TSS (NM_001033323)	promoter-TSS (NM_001033323)	-28	NM_001129787	235086	Mm.335029	NM_001033323	ENSMUSG00000034275	Igsf9b	Gm508|mKIAA1030	immunoglobulin superfamily, member 9B	protein-coding
diff_RLAGL_Vector_cond1_7520	chr5	5319912	5320460	+	11.27692	NA	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54118	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding
diff_RLAGL_Vector_cond1_4525	chr17	61960950	61961153	+	11.27588	NA	Intergenic	Intergenic	920266	NM_207654	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
diff_RLAGL_Vector_cond1_740	chr1	181017429	181017700	+	11.27495	NA	promoter-TSS (NM_010145)	promoter-TSS (NM_010145)	5	NM_010145	13849	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding
diff_RLAGL_Vector_cond1_3990	chr16	44875182	44875968	+	11.27464	NA	intron (NM_206535, intron 1 of 5)	Lx6|LINE|L1	8478	NM_206535	271375	Mm.441535	NM_206535	ENSMUSG00000090176	Cd200r2	AY230198|Cd200r1l	Cd200 receptor 2	protein-coding
diff_RLAGL_Vector_cond1_3434	chr15	7015105	7015380	+	11.27250	NA	Intergenic	Intergenic	-114330	NM_001113386	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding
diff_RLAGL_Vector_cond1_3611	chr15	57949654	57949945	+	11.26574	NA	intron (NM_001167679, intron 11 of 17)	intron (NM_001167679, intron 11 of 17)	-36104	NM_173862	239463	Mm.221241	NM_173862		Fam83a	-	family with sequence similarity 83, member A	protein-coding
diff_RLAGL_Vector_cond1_9057	chr7	73198115	73198392	+	11.26131	NA	Intergenic	Intergenic	-96185	NR_046024	625243	Mm.261798	NR_046024		Gm6567	-	predicted gene 6567	ncRNA
diff_RLAGL_Vector_cond1_1122	chr10	72644103	72644375	+	11.26019	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-10607	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding
diff_RLAGL_Vector_cond1_9481	chr8	39015005	39015219	+	11.25905	NA	intron (NM_030254, intron 1 of 7)	intron (NM_030254, intron 1 of 7)	9245	NM_030254	80286	Mm.272722	NM_030254		Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding
diff_RLAGL_Vector_cond1_5446	chr2	48624116	48624782	+	11.25561	NA	Intergenic	Intergenic	-189660	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
diff_RLAGL_Vector_cond1_2713	chr13	60176150	60176383	+	11.25428	NA	exon (NM_008086, exon 1 of 1)	exon (NM_008086, exon 1 of 1)	1269	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding
diff_RLAGL_Vector_cond1_91	chr1	23383095	23383551	+	11.25409	NA	promoter-TSS (NM_001081079)	promoter-TSS (NM_001081079)	-148	NM_001081079	70155	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding
diff_RLAGL_Vector_cond1_9626	chr8	74273684	74274074	+	11.25284	NA	Intergenic	Intergenic	-599295	NM_001294278	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding
diff_RLAGL_Vector_cond1_7170	chr4	102656570	102656789	+	11.25009	NA	Intergenic	Intergenic	66836	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding
diff_RLAGL_Vector_cond1_2468	chr12	113748008	113748370	+	11.24969	NA	Intergenic	MurERV4-int|LTR|ERVK	204281	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding
diff_RLAGL_Vector_cond1_980	chr10	33940592	33941034	+	11.24740	NA	intron (NM_028287, intron 4 of 9)	intron (NM_028287, intron 4 of 9)	10399	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding
diff_RLAGL_Vector_cond1_3333	chr14	105685153	105685480	+	11.24212	NA	Intergenic	Intergenic	-61546	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
diff_RLAGL_Vector_cond1_7860	chr5	101441853	101442078	+	11.23895	NA	Intergenic	Intergenic	222746	NM_144955	18096	Mm.193072	NM_144955		Nkx6-1	NKX6A|Nkx6.1	NK6 homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_263	chr1	73456319	73456670	+	11.23438	NA	Intergenic	Intergenic	-48925	NR_003202	723792	Mm.385493	NR_003202		Pinc	-	pregnancy induced noncoding RNA	ncRNA
diff_RLAGL_Vector_cond1_690	chr1	173955666	173956416	+	11.23391	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-13369	NM_001302650	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	-	interferon activated gene 203	protein-coding
diff_RLAGL_Vector_cond1_3502	chr15	27718790	27718992	+	11.23224	NA	Intergenic	RMER13A|LTR|ERVK	-37349	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding
diff_RLAGL_Vector_cond1_4885	chr18	53417933	53418202	+	11.22995	NA	promoter-TSS (NM_008908)	promoter-TSS (NM_008908)	-60	NM_008908	19038	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding
diff_RLAGL_Vector_cond1_3270	chr14	96392097	96392492	+	11.22679	NA	intron (NM_053105, intron 1 of 10)	intron (NM_053105, intron 1 of 10)	126740	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
diff_RLAGL_Vector_cond1_2801	chr13	72198665	72199045	+	11.22510	NA	Intergenic	Intergenic	-235132	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2596	chr13	23931019	23931224	+	11.22497	NA	Intergenic	Intergenic	3035	NM_175663	319177	Mm.377879	NM_175663	ENSMUSG00000050799	Hist1h2ba	Th2b	histone cluster 1, H2ba	protein-coding
diff_RLAGL_Vector_cond1_4212	chr16	94827045	94827619	+	11.22103	NA	intron (NM_001025590, intron 2 of 2)	intron (NM_001025590, intron 2 of 2)	29358	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
diff_RLAGL_Vector_cond1_7173	chr4	103313632	103313926	+	11.21511	NA	promoter-TSS (NM_025909)	promoter-TSS (NM_025909)	-67	NM_025909	67013	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 homolog, zinc metallopeptidase (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_104	chr1	25713819	25714020	+	11.21431	NA	intron (NM_175642, intron 2 of 30)	intron (NM_175642, intron 2 of 30)	115788	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
diff_RLAGL_Vector_cond1_9911	chr9	12784596	12785092	+	11.20645	NA	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	321011	NR_040755	78219	Mm.414868	NR_040755		4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA
diff_RLAGL_Vector_cond1_9536	chr8	53607139	53607470	+	11.20524	NA	intron (NM_146208, intron 5 of 9)	intron (NM_146208, intron 5 of 9)	31761	NM_146208	234258	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_8923	chr7	39449222	39449587	+	11.20484	NA	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-114	NM_001243021	233147	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding
diff_RLAGL_Vector_cond1_6883	chr4	24496760	24496987	+	11.20196	NA	5' UTR (NM_199467, exon 1 of 24)	5' UTR (NM_199467, exon 1 of 24)	411	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
diff_RLAGL_Vector_cond1_10177	chr9	80813758	80814248	+	11.19127	NA	Intergenic	RLTR1F_Mm|LTR|ERVK	-348565	NM_022016	63859	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding
diff_RLAGL_Vector_cond1_8328	chr6	54179099	54179502	+	11.19108	NA	intron (NM_001163640, intron 2 of 12)	intron (NM_001163640, intron 2 of 12)	-85558	NM_001311133	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding
diff_RLAGL_Vector_cond1_6304	chr3	55054943	55055390	+	11.19025	NA	promoter-TSS (NR_040593)	promoter-TSS (NR_040593)	-76	NR_040593	70970	Mm.251485	NR_040593	ENSMUSG00000106589	4931419H13Rik	-	RIKEN cDNA 4931419H13 gene	ncRNA
diff_RLAGL_Vector_cond1_8257	chr6	34475997	34476443	+	11.18817	NA	promoter-TSS (NM_007563)	promoter-TSS (NM_007563)	-136	NM_007563	12183	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding
diff_RLAGL_Vector_cond1_7058	chr4	74785735	74786144	+	11.18672	NA	Intergenic	Intergenic	492347	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
diff_RLAGL_Vector_cond1_767	chr1	186182496	186182933	+	11.18487	NA	Intergenic	Intergenic	-65404	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding
diff_RLAGL_Vector_cond1_3602	chr15	55333390	55333623	+	11.18249	NA	intron (NM_181277, intron 2 of 47)	intron (NM_181277, intron 2 of 47)	25756	NM_181277	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_2077	chr12	12390289	12390645	+	11.18233	NA	intron (NR_045829, intron 2 of 4)	ERVB7_1-LTR_MM|LTR|ERVK	2008	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
diff_RLAGL_Vector_cond1_1787	chr11	83078132	83078378	+	11.17456	NA	Intergenic	Intergenic	13143	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding
diff_RLAGL_Vector_cond1_2858	chr13	89642884	89643252	+	11.17058	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	99444	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding
diff_RLAGL_Vector_cond1_20	chr1	7088552	7089279	+	11.16240	NA	promoter-TSS (NM_183028)	promoter-TSS (NM_183028)	-5	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_10033	chr9	40466828	40467044	+	11.15940	NA	Intergenic	Intergenic	-11172	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_8936	chr7	41599064	41599344	+	11.15672	NA	Intergenic	CpG	-34327	NM_023363	67607	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding
diff_RLAGL_Vector_cond1_4316	chr17	22817531	22817960	+	11.15629	NA	promoter-TSS (NR_030709)	promoter-TSS (NR_030709)	2	NR_030709	100042679	Mm.484007	NR_030709		Gm16386	EG545191|ENSMUSG00000073442|Gm21017	zinc finger protein 946 pseudogene	pseudo
diff_RLAGL_Vector_cond1_6863	chr4	20676104	20676316	+	11.15297	NA	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	102458	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding
diff_RLAGL_Vector_cond1_5841	chr2	138259802	138260016	+	11.14239	NA	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	3325	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_1061	chr10	56377027	56377347	+	11.13788	NA	promoter-TSS (NM_010288)	promoter-TSS (NM_010288)	-113	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_9545	chr8	54529912	54530296	+	11.13576	NA	promoter-TSS (NM_029701)	promoter-TSS (NM_029701)	-106	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10297	chr9	108977895	108978221	+	11.13422	NA	intron (NM_007738, intron 97 of 117)	intron (NM_007738, intron 97 of 117)	-8105	NM_145077	171530	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding
diff_RLAGL_Vector_cond1_2905	chr13	105121704	105122083	+	11.13313	NA	TTS (NM_025751)	TTS (NM_025751)	39771	NM_025751	66763	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding
diff_RLAGL_Vector_cond1_10480	chrX	89770930	89771182	+	11.12797	NA	Intergenic	RLTR9D|LTR|ERVK	18788	NM_001085511	245509	Mm.297700	NM_001085511	ENSMUSG00000079513	4932429P05Rik	-	RIKEN cDNA 4932429P05 gene	protein-coding
diff_RLAGL_Vector_cond1_4073	chr16	63278140	63278772	+	11.12757	NA	Intergenic	Intergenic	424149	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
diff_RLAGL_Vector_cond1_6326	chr3	58056798	58057192	+	11.12461	NA	Intergenic	Intergenic	106812	NR_040538	67850	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA
diff_RLAGL_Vector_cond1_6703	chr3	147963866	147964335	+	11.12103	NA	Intergenic	Intergenic	990535	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_3912	chr16	26105131	26105981	+	11.11817	NA	exon (NM_173379, exon 1 of 15)	exon (NM_173379, exon 1 of 15)	228	NM_173379	210530	Mm.326869	NM_173379		P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding
diff_RLAGL_Vector_cond1_329	chr1	86623351	86623632	+	11.11787	NA	Intergenic	Intergenic	36391	NM_172974	26895	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	protein-coding
diff_RLAGL_Vector_cond1_3455	chr15	9748773	9749056	+	11.11760	NA	promoter-TSS (NM_001305042)	promoter-TSS (NM_001305042)	-46	NM_001305042	320277	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding
diff_RLAGL_Vector_cond1_9068	chr7	74554564	74555290	+	11.11179	NA	promoter-TSS (NM_023908)	promoter-TSS (NM_023908)	-147	NM_001038643	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding
diff_RLAGL_Vector_cond1_4894	chr18	57132738	57132988	+	11.11114	NA	promoter-TSS (NM_001001979)	promoter-TSS (NM_001001979)	-227	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding
diff_RLAGL_Vector_cond1_5524	chr2	65249662	65249922	+	11.11112	NA	Intergenic	Intergenic	-11166	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding
diff_RLAGL_Vector_cond1_5314	chr2	18997833	18998476	+	11.10810	NA	promoter-TSS (NR_024323)	promoter-TSS (NR_024323)	-33	NM_008845	18718	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding
diff_RLAGL_Vector_cond1_4173	chr16	88545342	88545652	+	11.10781	NA	Intergenic	RMER15|LTR|ERVL	17686	NM_018778	54420	Mm.25836	NM_018778	ENSMUSG00000050520	Cldn8	AI648025	claudin 8	protein-coding
diff_RLAGL_Vector_cond1_2566	chr13	16012270	16012539	+	11.10662	NA	Intergenic	Intergenic	-2071	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
diff_RLAGL_Vector_cond1_8260	chr6	35079511	35079924	+	11.09791	NA	intron (NM_001164412, intron 2 of 10)	intron (NM_001164412, intron 2 of 10)	54020	NM_001164411	53621	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding
diff_RLAGL_Vector_cond1_7031	chr4	65589918	65590170	+	11.09663	NA	intron (NM_207109, intron 16 of 22)	intron (NM_207109, intron 16 of 22)	-14942	NM_001161782	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding
diff_RLAGL_Vector_cond1_6877	chr4	23587432	23587764	+	11.09538	NA	Intergenic	RMER15|LTR|ERVL	-908864	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
diff_RLAGL_Vector_cond1_1600	chr11	35769330	35769660	+	11.09306	NA	promoter-TSS (NM_145962)	promoter-TSS (NM_145962)	0	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding
diff_RLAGL_Vector_cond1_4176	chr16	88599882	88600581	+	11.09072	NA	Intergenic	Intergenic	12048	NM_001163141	239932	Mm.120273	NM_001163141	ENSMUSG00000050239	Krtap24-1	Gm312	keratin associated protein 24-1	protein-coding
diff_RLAGL_Vector_cond1_4298	chr17	20074044	20074567	+	11.09068	NA	Intergenic	MMERVK10D3_LTR|LTR|ERVK	-26100	NM_001104566	22313	Mm.379039	NM_001104566	ENSMUSG00000090315	Vmn2r104	V2r7	vomeronasal 2, receptor 104	protein-coding
diff_RLAGL_Vector_cond1_7095	chr4	84184560	84185174	+	11.08794	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	-139988	NR_130998	78238	Mm.243903	NR_130998		6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA
diff_RLAGL_Vector_cond1_9289	chr7	137555452	137555770	+	11.08574	NA	Intergenic	Intergenic	117937	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo
diff_RLAGL_Vector_cond1_9965	chr9	22827388	22827695	+	11.08130	NA	intron (NM_181316, intron 20 of 21)	intron (NM_181316, intron 20 of 21)	351826	NM_181316	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding
diff_RLAGL_Vector_cond1_5701	chr2	110486931	110487466	+	11.08043	NA	Intergenic	Intergenic	-110101	NM_001003915	241612	Mm.277148	NM_001003915		Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding
diff_RLAGL_Vector_cond1_2074	chr12	11455778	11456102	+	11.07640	NA	promoter-TSS (NM_001111118)	promoter-TSS (NM_001111118)	-139	NM_001111118	209550	Mm.341257	NM_001111118	ENSMUSG00000086022	Rad51ap2	EG209550	RAD51 associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_2065	chr12	9954240	9954632	+	11.06871	NA	Intergenic	Intergenic	379994	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7148	chr4	98322355	98322690	+	11.05680	NA	Intergenic	Intergenic	60743	NM_053157	94043	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4158	chr16	87307112	87307645	+	11.05679	NA	Intergenic	Intergenic	-46807	NM_026366	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
diff_RLAGL_Vector_cond1_8563	chr6	114901343	114901631	+	11.05612	NA	intron (NM_177683, intron 1 of 4)	intron (NM_177683, intron 1 of 4)	20265	NM_177683	232334	Mm.268357	NM_177683		Vgll4	BC048841|VGL-4	vestigial like 4 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6104	chr2	178098078	178098473	+	11.04693	NA	Intergenic	Intergenic	-19850	NM_001162922	353208	Mm.381194	NM_001162922		Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding
diff_RLAGL_Vector_cond1_10361	chr9	121415589	121416078	+	11.04672	NA	intron (NM_175114, intron 2 of 15)	intron (NM_175114, intron 2 of 15)	48875	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding
diff_RLAGL_Vector_cond1_4219	chr16	97096898	97097304	+	11.03499	NA	intron (NM_031174, intron 1 of 32)	intron (NM_031174, intron 1 of 32)	73634	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_7874	chr5	103193734	103194201	+	11.02957	NA	intron (NM_001310683, intron 2 of 13)	intron (NM_001310683, intron 2 of 13)	17367	NM_009158	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding
diff_RLAGL_Vector_cond1_6998	chr4	57153426	57153793	+	11.02759	NA	Intergenic	Intergenic	-10453	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding
diff_RLAGL_Vector_cond1_8225	chr6	24546639	24546910	+	11.02310	NA	intron (NM_080847, intron 1 of 9)	intron (NM_080847, intron 1 of 9)	18630	NM_080847	78910	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding
diff_RLAGL_Vector_cond1_376	chr1	96362761	96363321	+	11.02251	NA	Intergenic	Intergenic	299532	NR_040478	75159	Mm.243854	NR_040478	ENSMUSG00000100589	4930533P14Rik	-	RIKEN cDNA 4930533P14 gene	ncRNA
diff_RLAGL_Vector_cond1_7169	chr4	102478158	102478445	+	11.02105	NA	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	-91759	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding
diff_RLAGL_Vector_cond1_5802	chr2	134301603	134301949	+	11.02087	NA	Intergenic	Intergenic	252576	NM_010403	15112	Mm.26634	NM_010403	ENSMUSG00000027261	Hao1	GOX|Gox1|Hao-1	hydroxyacid oxidase 1, liver	protein-coding
diff_RLAGL_Vector_cond1_134	chr1	37568385	37568714	+	11.02062	NA	Intergenic	Intergenic	-27533	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding
diff_RLAGL_Vector_cond1_5564	chr2	76688240	76688470	+	11.00710	NA	intron (NM_031256, intron 5 of 7)	intron (NM_031256, intron 5 of 7)	13040	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding
diff_RLAGL_Vector_cond1_4342	chr17	26422389	26422807	+	11.00428	NA	intron (NM_001081656, intron 1 of 4)	intron (NM_001081656, intron 1 of 4)	7633	NM_001081656	240055	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding
diff_RLAGL_Vector_cond1_1872	chr11	99089188	99089667	+	11.00224	NA	promoter-TSS (NM_172564)	promoter-TSS (NM_172564)	-121	NM_172564	217169	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding
diff_RLAGL_Vector_cond1_2054	chr12	8232785	8232988	+	10.99235	NA	intron (NM_001167767, intron 3 of 5)	intron (NM_001167767, intron 3 of 5)	24759	NM_001167767	68832	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding
diff_RLAGL_Vector_cond1_671	chr1	172433021	172433329	+	10.99164	NA	Intergenic	Intergenic	-42185	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding
diff_RLAGL_Vector_cond1_2728	chr13	62015522	62016378	+	10.97962	NA	Intergenic	Intergenic	-113940	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding
diff_RLAGL_Vector_cond1_7711	chr5	50065688	50065938	+	10.97934	NA	Intergenic	Intergenic	-6817	NM_133911	70693	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding
diff_RLAGL_Vector_cond1_3001	chr14	11161783	11162307	+	10.97527	NA	promoter-TSS (NM_010210)	promoter-TSS (NM_010210)	-10	NM_010210	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding
diff_RLAGL_Vector_cond1_1559	chr11	24823173	24823460	+	10.97510	NA	Intergenic	Intergenic	-92594	NR_033491	100038617	Mm.387376	NR_033491	ENSMUSG00000073103	Gm10466	ENSMUSG00000073103	predicted gene 10466	ncRNA
diff_RLAGL_Vector_cond1_6216	chr3	23426979	23427666	+	10.97262	NA	Intergenic	RLTR9D|LTR|ERVK	1175952	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA
diff_RLAGL_Vector_cond1_2009	chr11	120098669	120099047	+	10.97165	NA	promoter-TSS (NM_183137)	promoter-TSS (NM_183137)	-76	NM_001110242	208501	Mm.46699	NM_001110242	ENSMUSG00000078572	1810043H04Rik	-	RIKEN cDNA 1810043H04 gene	protein-coding
diff_RLAGL_Vector_cond1_7863	chr5	102149553	102149773	+	10.96966	NA	Intergenic	Intergenic	-79742	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_3369	chr14	119137629	119138315	+	10.96903	NA	promoter-TSS (NM_015820)	promoter-TSS (NM_015820)	-293	NM_015820	50787	Mm.445777	NM_015820		Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding
diff_RLAGL_Vector_cond1_9737	chr8	104036666	104037205	+	10.96794	NA	Intergenic	Intergenic	-64690	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding
diff_RLAGL_Vector_cond1_3678	chr15	72852589	72853152	+	10.95939	NA	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-42546	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA
diff_RLAGL_Vector_cond1_5400	chr2	33616431	33616774	+	10.94967	NA	intron (NM_010725, intron 2 of 7)	intron (NM_010725, intron 2 of 7)	23909	NM_010725	16917	Mm.39825	NM_010725	ENSMUSG00000038765	Lmx1b	LMX1.1|LMX1.2	LIM homeobox transcription factor 1 beta	protein-coding
diff_RLAGL_Vector_cond1_3468	chr15	12039584	12039974	+	10.94799	NA	Intergenic	Intergenic	-43772	NM_011294	20024	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_6060	chr2	171735122	171735625	+	10.94407	NA	Intergenic	Intergenic	227426	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA
diff_RLAGL_Vector_cond1_10482	chrX	89904687	89905292	+	10.93788	NA	Intergenic	RLTR9A4|LTR|ERVK	27863	NM_001033880	245511	Mm.391261	NM_001033880	ENSMUSG00000035387	4930415L06Rik	Smek3p	RIKEN cDNA 4930415L06 gene	protein-coding
diff_RLAGL_Vector_cond1_1979	chr11	117334163	117334533	+	10.93703	NA	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	2035	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding
diff_RLAGL_Vector_cond1_6914	chr4	33573410	33573660	+	10.93414	NA	Intergenic	Intergenic	135454	NR_106198	102465904		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA
diff_RLAGL_Vector_cond1_5949	chr2	153259114	153259563	+	10.93397	NA	intron (NM_080463, intron 4 of 6)	intron (NM_080463, intron 4 of 6)	17806	NM_080463	140484	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_3917	chr16	26686260	26686475	+	10.93020	NA	intron (NM_134103, intron 4 of 7)	intron (NM_134103, intron 4 of 7)	69135	NR_105063	100504628	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA
diff_RLAGL_Vector_cond1_3723	chr15	81032847	81033415	+	10.93013	NA	intron (NM_153049, intron 2 of 12)	intron (NM_153049, intron 2 of 12)	55366	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding
diff_RLAGL_Vector_cond1_2329	chr12	80260314	80260633	+	10.92728	NA	promoter-TSS (NM_134156)	promoter-TSS (NM_134156)	-102	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_4119	chr16	76453738	76454033	+	10.92540	NA	Intergenic	Intergenic	-80836	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_4564	chr17	69382499	69383052	+	10.92162	NA	Intergenic	CpG	-1203	NM_009547	22666	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding
diff_RLAGL_Vector_cond1_8141	chr6	5256140	5256389	+	10.91917	NA	promoter-TSS (NM_173006)	promoter-TSS (NM_173006)	-31	NM_173006	269823	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding
diff_RLAGL_Vector_cond1_4732	chr18	7692925	7693167	+	10.91450	NA	Intergenic	CpG	-66183	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding
diff_RLAGL_Vector_cond1_7477	chr4	153227771	153228423	+	10.91432	NA	Intergenic	MTD-int|LTR|ERVL-MaLR	254733	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_1380	chr10	120014895	120015497	+	10.91282	NA	intron (NM_001277293, intron 14 of 24)	intron (NM_001277293, intron 14 of 24)	22274	NM_001277295	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_725	chr1	179386604	179386847	+	10.91168	NA	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	131278	NM_027188	69726	Mm.222338	NM_027188		Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_5803	chr2	134375224	134375462	+	10.90142	NA	Intergenic	Intergenic	179009	NM_010403	15112	Mm.26634	NM_010403	ENSMUSG00000027261	Hao1	GOX|Gox1|Hao-1	hydroxyacid oxidase 1, liver	protein-coding
diff_RLAGL_Vector_cond1_378	chr1	97564594	97564948	+	10.89930	NA	Intergenic	Intergenic	97247	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding
diff_RLAGL_Vector_cond1_6812	chr4	8245118	8245386	+	10.89565	NA	Intergenic	MLT2B2|LTR|ERVL	-6211	NM_007592	12319	Mm.119320	NM_007592		Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding
diff_RLAGL_Vector_cond1_4017	chr16	51741982	51742389	+	10.89536	NA	Intergenic	Intergenic	-289364	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
diff_RLAGL_Vector_cond1_4084	chr16	65829144	65829681	+	10.89102	NA	intron (NM_028572, intron 2 of 3)	CT-rich|Low_complexity|Low_complexity	13779	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8131	chr6	3399407	3399775	+	10.88940	NA	promoter-TSS (NM_010156)	promoter-TSS (NM_010156)	-20	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding
diff_RLAGL_Vector_cond1_8558	chr6	113326606	113326967	+	10.88480	NA	promoter-TSS (NM_010957)	promoter-TSS (NM_010957)	-190	NM_010957	18294	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding
diff_RLAGL_Vector_cond1_6098	chr2	177206390	177206639	+	10.88327	NA	Intergenic	Intergenic	-258228	NM_001177568	628308	Mm.460436	NM_001177568		Gm14420	OTTMUSG00000016588	predicted gene 14420	protein-coding
diff_RLAGL_Vector_cond1_2445	chr12	109895220	109895745	+	10.88191	NA	Intergenic	Intergenic	147604	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA
diff_RLAGL_Vector_cond1_3293	chr14	100756475	100757101	+	10.87888	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	443281	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding
diff_RLAGL_Vector_cond1_9773	chr8	110444189	110444467	+	10.87675	NA	intron (NM_172916, intron 19 of 86)	ORR1G|LTR|ERVL-MaLR	58028	NR_105058	100861869	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA
diff_RLAGL_Vector_cond1_4140	chr16	81254977	81255276	+	10.87513	NA	intron (NM_010954, intron 1 of 15)	intron (NM_010954, intron 1 of 15)	54429	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_9318	chr7	142932517	142932880	+	10.87116	NA	Intergenic	Intergenic	-32732	NM_009377	21823	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding
diff_RLAGL_Vector_cond1_9339	chr8	4231045	4231266	+	10.87027	NA	intron (NM_028175, intron 1 of 2)	intron (NM_028175, intron 1 of 2)	4328	NM_028175	72267	Mm.25479	NM_028175	ENSMUSG00000046589	Lrrc8e	1810049O03Rik|C87354	leucine rich repeat containing 8 family, member E	protein-coding
diff_RLAGL_Vector_cond1_9655	chr8	80031409	80031809	+	10.86980	NA	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	26399	NM_020259	15245	Mm.254493	NM_020259		Hhip	Hhip1	Hedgehog-interacting protein	protein-coding
diff_RLAGL_Vector_cond1_7274	chr4	123990658	123991029	+	10.86832	NA	Intergenic	CpG	73410	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding
diff_RLAGL_Vector_cond1_4159	chr16	87348144	87348443	+	10.86806	NA	Intergenic	Intergenic	-5892	NM_026366	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
diff_RLAGL_Vector_cond1_3477	chr15	16985747	16986168	+	10.86685	NA	Intergenic	Lx9|LINE|L1	207856	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
diff_RLAGL_Vector_cond1_8655	chr6	131294501	131294987	+	10.86388	NA	Intergenic	Intergenic	-1500	NM_025564	66441	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago-nashi homolog B (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6848	chr4	15361798	15362042	+	10.85420	NA	Intergenic	Intergenic	96100	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding
diff_RLAGL_Vector_cond1_7925	chr5	113133203	113133568	+	10.85281	NA	intron (NM_172884, intron 1 of 7)	intron (NM_172884, intron 1 of 7)	29928	NM_172884	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding
diff_RLAGL_Vector_cond1_407	chr1	107443918	107444145	+	10.85166	NA	intron (NM_027548, intron 4 of 7)	ORR1C1-int|LTR|ERVL-MaLR	21342	NM_027548	116872	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding
diff_RLAGL_Vector_cond1_9658	chr8	80493851	80494121	+	10.84424	NA	promoter-TSS (NM_010369)	promoter-TSS (NM_010369)	-59	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding
diff_RLAGL_Vector_cond1_8135	chr6	4086834	4087174	+	10.83898	NA	promoter-TSS (NM_009748)	promoter-TSS (NM_009748)	-77	NM_009748	12068	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	blocked early in transport 1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_2289	chr12	70347164	70347697	+	10.83735	NA	5' UTR (NM_001110203, exon 1 of 9)	5' UTR (NM_001110203, exon 1 of 9)	184	NM_001286387	94090	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding
diff_RLAGL_Vector_cond1_314	chr1	83146642	83146924	+	10.83635	NA	Intergenic	Intergenic	-12979	NR_027636	71227	Mm.256482	NM_027725	ENSMUSG00000053161	Daw1	4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo	dynein assembly factor with WDR repeat domains 1	protein-coding
diff_RLAGL_Vector_cond1_7829	chr5	89526890	89527112	+	10.82526	NA	promoter-TSS (NM_133192)	promoter-TSS (NM_133192)	-428	NM_133192	104443	Mm.447881	NM_133192	ENSMUSG00000035528	Npffr2	Gpr74|HG31|NPFF2	neuropeptide FF receptor 2	protein-coding
diff_RLAGL_Vector_cond1_3648	chr15	64938202	64938479	+	10.82148	NA	Intergenic	Intergenic	-16044	NM_009623	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding
diff_RLAGL_Vector_cond1_10135	chr9	66795486	66796108	+	10.81413	NA	promoter-TSS (NM_177583)	promoter-TSS (NM_177583)	-374	NM_177583	208117	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	anterior pharynx defective 1b homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_6757	chr3	155944103	155944630	+	10.81275	NA	Intergenic	Intergenic	-31988	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
diff_RLAGL_Vector_cond1_1478	chr11	7758856	7759196	+	10.80353	NA	Intergenic	Intergenic	-545103	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_4882	chr18	52409945	52410210	+	10.80301	NA	Intergenic	L3b|LINE|CR1	-55616	NM_026040	67222	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_4876	chr18	49986706	49987207	+	10.80256	NA	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	7529	NM_001177760	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2	tumor necrosis factor, alpha-induced protein 8	protein-coding
diff_RLAGL_Vector_cond1_7350	chr4	134950843	134951060	+	10.80042	NA	Intergenic	Intergenic	19971	NM_026780	68592	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10217	chr9	91362321	91362534	+	10.80008	NA	intron (NM_009573, intron 2 of 2)	CpG	3372	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding
diff_RLAGL_Vector_cond1_253	chr1	71475828	71476060	+	10.79940	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-61034	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
diff_RLAGL_Vector_cond1_262	chr1	73361966	73362372	+	10.79875	NA	Intergenic	Intergenic	-36799	NR_040605	78718	Mm.244075	NR_040605	ENSMUSG00000101812	D530049I02Rik	-	RIKEN cDNA D530049I02 gene	ncRNA
diff_RLAGL_Vector_cond1_1042	chr10	52828778	52829000	+	10.79850	NA	intron (NM_178675, intron 1 of 7)	intron (NM_178675, intron 1 of 7)	138388	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
diff_RLAGL_Vector_cond1_6311	chr3	55693041	55693468	+	10.79443	NA	intron (NM_030595, intron 46 of 57)	intron (NM_030595, intron 46 of 57)	-89256	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_6803	chr4	5732542	5732788	+	10.79131	NA	intron (NM_173426, intron 2 of 2)	intron (NM_173426, intron 2 of 2)	88486	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding
diff_RLAGL_Vector_cond1_6301	chr3	54245124	54245356	+	10.78452	NA	intron (NM_016984, intron 3 of 10)	intron (NM_016984, intron 3 of 10)	89183	NM_001253683	22066	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding
diff_RLAGL_Vector_cond1_6142	chr3	7366320	7366703	+	10.78157	NA	promoter-TSS (NM_008862)	promoter-TSS (NM_008862)	-93	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding
diff_RLAGL_Vector_cond1_8948	chr7	43873293	43873556	+	10.78070	NA	Intergenic	Intergenic	-7748	NM_019928	56640	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding
diff_RLAGL_Vector_cond1_1656	chr11	53797535	53797815	+	10.77727	NA	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	27202	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding
diff_RLAGL_Vector_cond1_9516	chr8	46848997	46849295	+	10.77315	NA	Intergenic	Intergenic	109401	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding
diff_RLAGL_Vector_cond1_2362	chr12	91040617	91040932	+	10.77135	NA	intron (NM_181815, intron 22 of 25)	intron (NM_181815, intron 22 of 25)	-5074	NR_045858	71349	Mm.442093	NR_045858		5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA
diff_RLAGL_Vector_cond1_6402	chr3	75956596	75957190	+	10.76974	NA	promoter-TSS (NM_175193)	promoter-TSS (NM_175193)	56	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding
diff_RLAGL_Vector_cond1_6554	chr3	117725551	117725833	+	10.76813	NA	Intergenic	RLTR22_Mur|LTR|ERVK	143244	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
diff_RLAGL_Vector_cond1_3559	chr15	44618839	44619776	+	10.76431	NA	promoter-TSS (NM_019480)	promoter-TSS (NM_019480)	-334	NM_019480	55960	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding
diff_RLAGL_Vector_cond1_7035	chr4	67167655	67168277	+	10.76330	NA	Intergenic	Intergenic	340415	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding
diff_RLAGL_Vector_cond1_8995	chr7	57386751	57387012	+	10.76222	NA	promoter-TSS (NR_033504)	promoter-TSS (NR_033504)	-10	NM_008074	14407	Mm.434343	NM_008074		Gabrg3	B230362M20Rik|Gabrg-3	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	protein-coding
diff_RLAGL_Vector_cond1_7127	chr4	93335118	93335793	+	10.76042	NA	promoter-TSS (NM_026954)	promoter-TSS (NM_026954)	56	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding
diff_RLAGL_Vector_cond1_10307	chr9	111739571	111739858	+	10.76029	NA	Intergenic	Intergenic	-49498	NM_016853	20840	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding
diff_RLAGL_Vector_cond1_349	chr1	90348300	90348809	+	10.75738	NA	Intergenic	RLTR12D|LTR|ERVK	144574	NM_001271607	12778	Mm.6522	NM_007722		Ackr3	AW541270|CXC-R7|CXCR-7|Cmkor1|Cxcr7|RDC-1|Rdc1	atypical chemokine receptor 3	protein-coding
diff_RLAGL_Vector_cond1_2625	chr13	31567282	31568004	+	10.74975	NA	intron (NR_029439, intron 3 of 5)	intron (NR_029439, intron 3 of 5)	9473	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding
diff_RLAGL_Vector_cond1_4598	chr17	75372436	75372673	+	10.74801	NA	intron (NM_206958, intron 27 of 29)	intron (NM_206958, intron 27 of 29)	-63351	NM_001166493	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding
diff_RLAGL_Vector_cond1_5856	chr2	140861838	140862069	+	10.74473	NA	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-190477	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_70	chr1	18533428	18533670	+	10.74350	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-268411	NM_001040027	654464	Mm.99530	NM_001040027		Gm15386	BD-17|BD-41|Defb17|Defb41|OTTMUSG00000020946|OTTMUSG00000020948|mBD-41	predicted gene 15386	protein-coding
diff_RLAGL_Vector_cond1_726	chr1	179628436	179628973	+	10.74186	NA	Intergenic	Intergenic	-39527	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding
diff_RLAGL_Vector_cond1_9097	chr7	82479462	82479697	+	10.73940	NA	intron (NM_001190374, intron 7 of 29)	intron (NM_001190374, intron 7 of 29)	143885	NM_001190374	269959	Mm.65306	NM_001190374	ENSMUSG00000070469	Adamtsl3	9230119C12Rik|C130057K09|mKIAA1233	ADAMTS-like 3	protein-coding
diff_RLAGL_Vector_cond1_6577	chr3	125969475	125969762	+	10.73684	NA	Intergenic	Intergenic	-31068	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding
diff_RLAGL_Vector_cond1_2172	chr12	35248541	35248770	+	10.73671	NA	Intergenic	Intergenic	201466	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding
diff_RLAGL_Vector_cond1_689	chr1	173821335	173822026	+	10.73667	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-54761	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding
diff_RLAGL_Vector_cond1_5779	chr2	128413049	128413312	+	10.73619	NA	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	16171	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA
diff_RLAGL_Vector_cond1_5685	chr2	108165211	108165453	+	10.73550	NA	Intergenic	Lx9|LINE|L1	874743	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
diff_RLAGL_Vector_cond1_8293	chr6	43480753	43481125	+	10.73423	NA	intron (NM_013861, intron 6 of 8)	intron (NM_013861, intron 6 of 8)	38510	NR_045988	319812	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA
diff_RLAGL_Vector_cond1_851	chr10	5824155	5824743	+	10.73165	NA	promoter-TSS (NM_175374)	promoter-TSS (NM_175374)	-506	NM_175374	108853	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding
diff_RLAGL_Vector_cond1_8806	chr7	6383044	6383441	+	10.72752	NA	promoter-TSS (NM_175247)	promoter-TSS (NM_175247)	-76	NM_175247	22690	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding
diff_RLAGL_Vector_cond1_5819	chr2	136648646	136649085	+	10.72697	NA	Intergenic	Intergenic	-64585	NM_011428	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding
diff_RLAGL_Vector_cond1_9187	chr7	109439033	109439286	+	10.72659	NA	promoter-TSS (NM_054103)	promoter-TSS (NM_054103)	-106	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding
diff_RLAGL_Vector_cond1_5693	chr2	110131591	110131847	+	10.72287	NA	Intergenic	Intergenic	-81240	NR_040508	75517	Mm.363927	NR_040508	ENSMUSG00000086186	Ccdc34os	1700024P03Rik	coiled-coil domain containing 34, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_773	chr1	186964526	186964827	+	10.72243	NA	Intergenic	Intergenic	-2740	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding
diff_RLAGL_Vector_cond1_3308	chr14	102838063	102838281	+	10.72235	NA	Intergenic	Intergenic	144460	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
diff_RLAGL_Vector_cond1_7722	chr5	51233439	51233811	+	10.70995	NA	Intergenic	Intergenic	320296	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding
diff_RLAGL_Vector_cond1_10159	chr9	74645494	74645712	+	10.70927	NA	Intergenic	Intergenic	-202834	NR_045284	100503019	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA
diff_RLAGL_Vector_cond1_264	chr1	73630357	73630674	+	10.70911	NA	intron (NR_045311, intron 7 of 8)	intron (NR_045311, intron 7 of 8)	-222946	NR_003202	723792	Mm.385493	NR_003202		Pinc	-	pregnancy induced noncoding RNA	ncRNA
diff_RLAGL_Vector_cond1_8653	chr6	129680246	129680877	+	10.70655	NA	Intergenic	Intergenic	-1588	NM_010652	16641	Mm.56899	NM_010652	ENSMUSG00000030167	Klrc1	CD159a|NKG2A|NKG2B	killer cell lectin-like receptor subfamily C, member 1	protein-coding
diff_RLAGL_Vector_cond1_6293	chr3	52140254	52140471	+	10.70495	NA	Intergenic	Intergenic	-35356	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3748	chr15	86439297	86439646	+	10.70333	NA	intron (NM_145476, intron 11 of 12)	intron (NM_145476, intron 11 of 12)	225012	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding
diff_RLAGL_Vector_cond1_5677	chr2	106650274	106650545	+	10.70231	NA	Intergenic	Intergenic	-43050	NM_001143683	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_5744	chr2	120482925	120483166	+	10.69897	NA	intron (NM_007601, intron 3 of 23)	RLTR40|LTR|ERVK	6136	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding
diff_RLAGL_Vector_cond1_295	chr1	79641526	79641731	+	10.69552	NA	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	30344	NM_183027	252903	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding
diff_RLAGL_Vector_cond1_1581	chr11	31370004	31370300	+	10.69527	NA	promoter-TSS (NM_011491)	promoter-TSS (NM_011491)	-91	NM_011491	20856	Mm.32506	NM_011491		Stc2	AW125853|Stc2l|mustc2	stanniocalcin 2	protein-coding
diff_RLAGL_Vector_cond1_7720	chr5	50915273	50915856	+	10.69473	NA	Intergenic	Intergenic	638357	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding
diff_RLAGL_Vector_cond1_8526	chr6	101539969	101540292	+	10.69315	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-162233	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
diff_RLAGL_Vector_cond1_4657	chr17	86334964	86335377	+	10.69228	NA	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-47992	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA
diff_RLAGL_Vector_cond1_9712	chr8	92355841	92356427	+	10.68984	NA	promoter-TSS (NR_110452)	promoter-TSS (NR_110452)	-14	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA
diff_RLAGL_Vector_cond1_3325	chr14	104467735	104468365	+	10.68962	NA	promoter-TSS (NM_011143)	promoter-TSS (NM_011143)	-51	NM_011143	18996	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_3926	chr16	30416832	30417031	+	10.68439	NA	Intergenic	Intergenic	-28401	NM_001128094	224088	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding
diff_RLAGL_Vector_cond1_10451	chrX	67829745	67830081	+	10.68016	NA	Intergenic	Intergenic	91537	NM_025763	66780	Mm.79193	NM_025763	ENSMUSG00000025288	4933436I01Rik	-	RIKEN cDNA 4933436I01 gene	protein-coding
diff_RLAGL_Vector_cond1_7210	chr4	111719760	111720263	+	10.67864	NA	promoter-TSS (NM_026470)	promoter-TSS (NM_026470)	1	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding
diff_RLAGL_Vector_cond1_163	chr1	44198335	44198559	+	10.67706	NA	Intergenic	Intergenic	20484	NM_207281	403183	Mm.336176	NM_207281	ENSMUSG00000046828	Mettl21e	4832428D23Rik|Gm991	methyltransferase like 21E	protein-coding
diff_RLAGL_Vector_cond1_2512	chr13	3768636	3769027	+	10.67596	NA	Intergenic	Intergenic	35487	NM_027416	70405	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding
diff_RLAGL_Vector_cond1_8101	chr5	147869679	147869888	+	10.67528	NA	intron (NM_025624, intron 4 of 5)	intron (NM_025624, intron 4 of 5)	9155	NM_025624	66537	Mm.332855	NM_025624		Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding
diff_RLAGL_Vector_cond1_6078	chr2	173264685	173265120	+	10.67019	NA	intron (NM_022995, intron 1 of 3)	MIR|SINE|MIR	11631	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding
diff_RLAGL_Vector_cond1_7956	chr5	118413512	118413739	+	10.66880	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-147094	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding
diff_RLAGL_Vector_cond1_5698	chr2	110316511	110316834	+	10.66794	NA	Intergenic	MTD|LTR|ERVL-MaLR	-10947	NM_130452	170442	Mm.27335	NM_130452		Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding
diff_RLAGL_Vector_cond1_3016	chr14	15801556	15802099	+	10.66670	NA	Intergenic	Intergenic	-362840	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding
diff_RLAGL_Vector_cond1_7721	chr5	50916448	50916734	+	10.66603	NA	Intergenic	Intergenic	637330	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding
diff_RLAGL_Vector_cond1_7995	chr5	130853413	130853655	+	10.66515	NA	Intergenic	Intergenic	404742	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding
diff_RLAGL_Vector_cond1_3873	chr16	14840822	14841076	+	10.66433	NA	Intergenic	Intergenic	-65697	NM_025769	66793	Mm.100270	NM_025769		Efcab1	4930449A16Rik|5430404L10Rik	EF hand calcium binding domain 1	protein-coding
diff_RLAGL_Vector_cond1_7564	chr5	18502948	18503348	+	10.66221	NA	Intergenic	RLTR53_Mm|LTR|ERVK	-142735	NM_010305	14677	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding
diff_RLAGL_Vector_cond1_2574	chr13	18457487	18458142	+	10.65852	NA	Intergenic	Intergenic	-75775	NM_175006	218030	Mm.352263	NM_175006	ENSMUSG00000009734	Pou6f2	D130006K24Rik|RPF-1	POU domain, class 6, transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_3589	chr15	53480489	53480712	+	10.65708	NA	intron (NM_177225, intron 4 of 4)	Kanga1c|DNA|TcMar-Tc2	-134417	NM_010162	14042	Mm.309395	NM_010162		Ext1	AA409028	exostoses (multiple) 1	protein-coding
diff_RLAGL_Vector_cond1_10188	chr9	83727567	83727810	+	10.65470	NA	Intergenic	Intergenic	36213	NR_046066	100039222	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA
diff_RLAGL_Vector_cond1_9260	chr7	131553929	131554289	+	10.65453	NA	promoter-TSS (NM_145998)	promoter-TSS (NM_145998)	47	NM_145998	15372	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_6183	chr3	16915454	16916013	+	10.64825	NA	Intergenic	Intergenic	732550	NR_027375	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding
diff_RLAGL_Vector_cond1_2559	chr13	13590104	13590555	+	10.64804	NA	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-80	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding
diff_RLAGL_Vector_cond1_8335	chr6	55203230	55203475	+	10.64432	NA	promoter-TSS (NM_177883)	promoter-TSS (NM_177883)	-31	NM_177883	330323	Mm.268997	NM_177883	ENSMUSG00000038022	Fam188b	C330043M08Rik|Gm1406	family with sequence similarity 188, member B	protein-coding
diff_RLAGL_Vector_cond1_7320	chr4	132922599	132922850	+	10.64211	NA	promoter-TSS (NM_001163792)	promoter-TSS (NM_001163792)	-173	NM_145553	230789	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding
diff_RLAGL_Vector_cond1_553	chr1	146497854	146498055	+	10.63942	NA	intron (NM_001145807, intron 1 of 7)	intron (NM_001145807, intron 1 of 7)	267	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_6631	chr3	135024454	135024846	+	10.63774	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-187913	NM_173762	229841	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding
diff_RLAGL_Vector_cond1_695	chr1	175625322	175626021	+	10.63470	NA	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-36	NM_010209	14194	Mm.41502	NM_010209		Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding
diff_RLAGL_Vector_cond1_8350	chr6	58029170	58029549	+	10.63322	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-20157	NM_134172	171190	Mm.377170	NM_134172	ENSMUSG00000048697	Vmn1r26	V1rc17	vomeronasal 1 receptor 26	protein-coding
diff_RLAGL_Vector_cond1_7066	chr4	76155874	76156162	+	10.63035	NA	intron (NM_011211, intron 13 of 39)	intron (NM_011211, intron 13 of 39)	-877732	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
diff_RLAGL_Vector_cond1_4013	chr16	50431949	50432483	+	10.62874	NA	intron (NM_027444, intron 1 of 16)	CpG	173	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6132	chr2	181952371	181952647	+	10.62789	NA	Intergenic	Intergenic	-38717	NM_001205282	672125	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	OTTMUSG00000016837	predicted gene 14496	protein-coding
diff_RLAGL_Vector_cond1_3888	chr16	19540653	19540898	+	10.62768	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-9857	NM_146357	258354	Mm.377451	NM_146357	ENSMUSG00000061361	Olfr168	MOR271-1	olfactory receptor 168	protein-coding
diff_RLAGL_Vector_cond1_6315	chr3	55950072	55950372	+	10.62744	NA	intron (NM_030595, intron 33 of 57)	intron (NM_030595, intron 33 of 57)	103117	NR_033592	71182	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo
diff_RLAGL_Vector_cond1_3191	chr14	67973704	67974045	+	10.62543	NA	Intergenic	Intergenic	-40302	NM_177780	68813	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding
diff_RLAGL_Vector_cond1_10433	chrX	52535692	52535921	+	10.62498	NA	intron (NM_016697, intron 2 of 7)	L1MA4|LINE|L1	-40037	NR_045367	100504594	Mm.447008	NR_045367	ENSMUSG00000055110	A630012P03Rik	-	RIKEN cDNA A630012P03 gene	ncRNA
diff_RLAGL_Vector_cond1_4333	chr17	25727304	25727813	+	10.62000	NA	promoter-TSS (NM_028009)	promoter-TSS (NM_028009)	-143	NM_145409	214901	Mm.102540	NM_145409	ENSMUSG00000019214	Chtf18	6030457M03Rik|CTF18|Chl12	CTF18, chromosome transmission fidelity factor 18	protein-coding
diff_RLAGL_Vector_cond1_10520	chrX	109175582	109175805	+	10.61814	NA	Intergenic	RMER17B|LTR|ERVK	-21063	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding
diff_RLAGL_Vector_cond1_797	chr1	190532836	190533352	+	10.61150	NA	Intergenic	Intergenic	-362414	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_5817	chr2	136456516	136457005	+	10.61119	NA	Intergenic	LTR37B|LTR|ERV1	-68793	NM_172858	241656	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|6430627N20|Pak5	p21 protein (Cdc42/Rac)-activated kinase 7	protein-coding
diff_RLAGL_Vector_cond1_5407	chr2	35621787	35622099	+	10.60903	NA	promoter-TSS (NM_001114124)	promoter-TSS (NM_001114124)	-38	NM_001290641	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_6844	chr4	15139136	15139430	+	10.60830	NA	intron (NM_178617, intron 2 of 12)	intron (NM_178617, intron 2 of 12)	9848	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_2795	chr13	70637460	70637739	+	10.60800	NA	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	35	NM_144837	218333	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding
diff_RLAGL_Vector_cond1_2621	chr13	31458945	31459221	+	10.60623	NA	Intergenic	Intergenic	-99087	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding
diff_RLAGL_Vector_cond1_1252	chr10	91081935	91082159	+	10.60432	NA	promoter-TSS (NM_026166)	promoter-TSS (NM_026166)	696	NM_001282947	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding
diff_RLAGL_Vector_cond1_1522	chr11	17159068	17159435	+	10.60325	NA	promoter-TSS (NM_024459)	promoter-TSS (NM_024459)	-47	NM_024459	19058	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding
diff_RLAGL_Vector_cond1_705	chr1	176389447	176389741	+	10.60041	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-114282	NM_176916	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding
diff_RLAGL_Vector_cond1_10001	chr9	34984011	34984394	+	10.59738	NA	intron (NM_001190914, intron 5 of 16)	MIRb|SINE|MIR	-132526	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA
diff_RLAGL_Vector_cond1_2304	chr12	72536051	72536543	+	10.59569	NA	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-60	NM_026327	67708	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnxl4	1810048J11Rik|4932413O10|AU017192	pecanex-like 4 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_617	chr1	161876618	161877418	+	10.58920	NA	promoter-TSS (NM_172645)	promoter-TSS (NM_172645)	-357	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding
diff_RLAGL_Vector_cond1_1613	chr11	39953940	39954296	+	10.58745	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-563893	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
diff_RLAGL_Vector_cond1_6713	chr3	148899849	148900232	+	10.58480	NA	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	54595	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_6845	chr4	15256816	15257333	+	10.58194	NA	Intergenic	Intergenic	-8746	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding
diff_RLAGL_Vector_cond1_1461	chr11	5142074	5142329	+	10.58145	NA	intron (NM_080595, intron 3 of 14)	intron (NM_080595, intron 3 of 14)	10021	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4772	chr18	20463118	20463334	+	10.57404	NA	intron (NM_181564, intron 12 of 15)	intron (NM_181564, intron 12 of 15)	27051	NM_181564	16769	Mm.358619	NM_181564	ENSMUSG00000001804	Dsg4	CDHF13|lah	desmoglein 4	protein-coding
diff_RLAGL_Vector_cond1_197	chr1	57917467	57917667	+	10.56679	NA	intron (NM_144882, intron 9 of 13)	intron (NM_144882, intron 9 of 13)	51957	NR_027630	51960	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding
diff_RLAGL_Vector_cond1_8754	chr6	144331910	144332525	+	10.56473	NA	Intergenic	Intergenic	-122649	NM_001243163	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
diff_RLAGL_Vector_cond1_642	chr1	166130035	166130490	+	10.56047	NA	promoter-TSS (NM_021610)	promoter-TSS (NM_021610)	-198	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding
diff_RLAGL_Vector_cond1_6095	chr2	174748345	174748734	+	10.55669	NA	Intergenic	Intergenic	-12219	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	114CH19|ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding
diff_RLAGL_Vector_cond1_4798	chr18	30528978	30529284	+	10.55636	NA	Intergenic	Intergenic	256235	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
diff_RLAGL_Vector_cond1_6101	chr2	177758882	177759415	+	10.55623	NA	promoter-TSS (NM_001243903)	promoter-TSS (NM_001243903)	-140	NM_001243903	626802	Mm.386029	NM_001243903		Gm14322	OTTMUSG00000016321	predicted gene 14322	protein-coding
diff_RLAGL_Vector_cond1_2357	chr12	89937766	89938131	+	10.55431	NA	intron (NM_001252074, intron 1 of 6)	intron (NM_001252074, intron 1 of 6)	125465	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
diff_RLAGL_Vector_cond1_9361	chr8	8050600	8051416	+	10.54538	NA	Intergenic	Intergenic	609765	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
diff_RLAGL_Vector_cond1_3029	chr14	19208589	19208932	+	10.54058	NA	Intergenic	Intergenic	-315133	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding
diff_RLAGL_Vector_cond1_813	chr1	192599958	192600200	+	10.53665	NA	intron (NM_144881, intron 9 of 11)	RLTR40|LTR|ERVK	171140	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding
diff_RLAGL_Vector_cond1_7176	chr4	105113016	105113229	+	10.53630	NA	Intergenic	URR1B|DNA|hAT-Charlie	-3224	NM_178143	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding
diff_RLAGL_Vector_cond1_607	chr1	160079242	160079719	+	10.53399	NA	TTS (NM_001162896)	TTS (NM_001162896)	-1495	NR_038031	75255	Mm.414845	NR_038030	ENSMUSG00000026729	4930562F07Rik	-	RIKEN cDNA 4930562F07 gene	ncRNA
diff_RLAGL_Vector_cond1_7388	chr4	140854557	140854791	+	10.52609	NA	Intergenic	Intergenic	-8896	NM_011059	18599	Mm.20854	NM_011059	ENSMUSG00000025329	Padi1	AV236283|Pdi1	peptidyl arginine deiminase, type I	protein-coding
diff_RLAGL_Vector_cond1_5035	chr18	88772782	88773059	+	10.51395	NA	Intergenic	Intergenic	121287	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
diff_RLAGL_Vector_cond1_53	chr1	13372716	13373189	+	10.51325	NA	promoter-TSS (NM_001302702)	promoter-TSS (NM_001302702)	-523	NM_001302702	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
diff_RLAGL_Vector_cond1_9968	chr9	23219822	23220115	+	10.51281	NA	Intergenic	Intergenic	-3108	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding
diff_RLAGL_Vector_cond1_4519	chr17	57788468	57788767	+	10.51219	NA	intron (NM_001081653, intron 1 of 23)	RLTR22_Mus|LTR|ERVK	19047	NM_001081653	620292	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding
diff_RLAGL_Vector_cond1_4849	chr18	42770228	42770534	+	10.50925	NA	intron (NM_028392, intron 1 of 8)	L2a|LINE|L2	129125	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
diff_RLAGL_Vector_cond1_2448	chr12	110499204	110499473	+	10.50784	NA	intron (NM_012023, intron 1 of 13)	intron (NM_012023, intron 1 of 13)	13599	NM_001081457	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding
diff_RLAGL_Vector_cond1_4177	chr16	88612022	88612268	+	10.50467	NA	exon (NM_001163141, exon 1 of 1)	exon (NM_001163141, exon 1 of 1)	134	NM_001163141	239932	Mm.120273	NM_001163141	ENSMUSG00000050239	Krtap24-1	Gm312	keratin associated protein 24-1	protein-coding
diff_RLAGL_Vector_cond1_2076	chr12	12039347	12039579	+	10.50392	NA	Intergenic	Lx8|LINE|L1	-156564	NR_003964	627110	Mm.194735	NR_003964		Tubb2a-ps2	C79445	tubulin, beta 2a, pseudogene 2	pseudo
diff_RLAGL_Vector_cond1_3384	chr14	121541252	121541597	+	10.50222	NA	TTS (NM_001128308)	TTS (NM_001128308)	-36170	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding
diff_RLAGL_Vector_cond1_1888	chr11	101809123	101809352	+	10.50189	NA	Intergenic	Intergenic	-23927	NM_001316366	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding
diff_RLAGL_Vector_cond1_8059	chr5	138948085	138948477	+	10.49914	NA	Intergenic	Intergenic	46672	NM_008808	18590	Mm.2675	NM_008808		Pdgfa	-	platelet derived growth factor, alpha	protein-coding
diff_RLAGL_Vector_cond1_5842	chr2	138267866	138268180	+	10.49722	NA	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	-10470	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4591	chr17	73962537	73962891	+	10.49446	NA	Intergenic	Intergenic	-12518	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding
diff_RLAGL_Vector_cond1_5260	chr2	6871837	6873041	+	10.48947	NA	intron (NM_001110229, intron 2 of 14)	CpG	12557	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
diff_RLAGL_Vector_cond1_6889	chr4	26241437	26241942	+	10.48815	NA	Intergenic	RLTR13A3|LTR|ERVK	104963	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding
diff_RLAGL_Vector_cond1_1317	chr10	107668280	107668845	+	10.48608	NA	intron (NM_001081432, intron 14 of 44)	intron (NM_001081432, intron 14 of 44)	51465	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding
diff_RLAGL_Vector_cond1_3963	chr16	39667888	39668609	+	10.47956	NA	Intergenic	Intergenic	765903	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
diff_RLAGL_Vector_cond1_7438	chr4	148140434	148140774	+	10.46811	NA	5' UTR (NM_027985, exon 1 of 8)	5' UTR (NM_027985, exon 1 of 8)	114	NM_027985	71890	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding
diff_RLAGL_Vector_cond1_2464	chr12	112876484	112876740	+	10.46699	NA	Intergenic	Intergenic	-15696	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding
diff_RLAGL_Vector_cond1_2253	chr12	55836054	55836486	+	10.46491	NA	promoter-TSS (NM_001037756)	promoter-TSS (NM_001037756)	-96	NM_001037756	52592	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding
diff_RLAGL_Vector_cond1_9882	chr9	4309130	4310128	+	10.46471	NA	promoter-TSS (NM_026276)	promoter-TSS (NM_026276)	-114	NM_001164574	69149	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_3872	chr16	14802352	14802756	+	10.46349	NA	Intergenic	Intergenic	96695	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding
diff_RLAGL_Vector_cond1_7224	chr4	114545554	114546176	+	10.46333	NA	intron (NM_001085549, intron 2 of 6)	intron (NM_001085549, intron 2 of 6)	139141	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding
diff_RLAGL_Vector_cond1_3168	chr14	62492505	62492790	+	10.46242	NA	Intergenic	Intergenic	-36358	NM_172810	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding
diff_RLAGL_Vector_cond1_10040	chr9	42240797	42241030	+	10.45441	NA	Intergenic	Intergenic	23387	NM_172769	235293	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)	protein-coding
diff_RLAGL_Vector_cond1_7138	chr4	96553562	96553813	+	10.45275	NA	promoter-TSS (NM_010008)	promoter-TSS (NM_010008)	-36	NM_010008	13110	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding
diff_RLAGL_Vector_cond1_6009	chr2	163580205	163580491	+	10.44703	NA	Intergenic	Intergenic	-21966	NM_181734	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding
diff_RLAGL_Vector_cond1_7768	chr5	68578439	68578792	+	10.44618	NA	Intergenic	Intergenic	546780	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding
diff_RLAGL_Vector_cond1_8689	chr6	135387712	135387921	+	10.44345	NA	Intergenic	Intergenic	20323	NM_001288627	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding
diff_RLAGL_Vector_cond1_9017	chr7	64872715	64873106	+	10.44000	NA	exon (NM_023239, exon 1 of 1)	exon (NM_023239, exon 1 of 1)	130	NM_023239	66647	Mm.19944	NM_023239		Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|mage-g1	necdin-like 2	protein-coding
diff_RLAGL_Vector_cond1_2342	chr12	85280274	85280642	+	10.43829	NA	promoter-TSS (NM_025421)	promoter-TSS (NM_025421)	-23	NM_025421	66204	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding
diff_RLAGL_Vector_cond1_9254	chr7	130042546	130042764	+	10.43716	NA	Intergenic	L2a|LINE|L2	80490	NR_046077	100043150	Mm.334264	NR_046077		Gm4265	-	predicted gene 4265	ncRNA
diff_RLAGL_Vector_cond1_4028	chr16	52452964	52453464	+	10.43267	NA	promoter-TSS (NM_009655)	promoter-TSS (NM_009655)	-217	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_8443	chr6	86669311	86669674	+	10.43205	NA	promoter-TSS (NM_010751)	promoter-TSS (NM_010751)	-333	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding
diff_RLAGL_Vector_cond1_17	chr1	6904703	6904967	+	10.43202	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	174784	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
diff_RLAGL_Vector_cond1_10412	chrX	20950511	20950781	+	10.43068	NA	promoter-TSS (NM_007922)	promoter-TSS (NM_007922)	-38	NM_007922	13712	Mm.405823	NM_007922	ENSMUSG00000009406	Elk1	Elk-1	ELK1, member of ETS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_5839	chr2	138256354	138256594	+	10.43001	NA	promoter-TSS (NM_001025431)	promoter-TSS (NM_001025431)	-110	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_3636	chr15	62646491	62646950	+	10.42906	NA	Intergenic	MIRb|SINE|MIR	-427269	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo
diff_RLAGL_Vector_cond1_3441	chr15	7616074	7616320	+	10.42771	NA	Intergenic	Intergenic	-193851	NM_001301332	14573	Mm.4679	NM_010275		Gdnf	AI385739	glial cell line derived neurotrophic factor	protein-coding
diff_RLAGL_Vector_cond1_2892	chr13	98684456	98684769	+	10.42595	NA	Intergenic	Intergenic	10219	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding
diff_RLAGL_Vector_cond1_4796	chr18	30272606	30272904	+	10.42253	NA	promoter-TSS (NM_181414)	promoter-TSS (NM_181414)	-141	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
diff_RLAGL_Vector_cond1_6265	chr3	40846458	40846940	+	10.42077	NA	promoter-TSS (NR_038067)	promoter-TSS (NR_038067)	155	NM_028140	72175	Mm.130610	NM_028140	ENSMUSG00000025759	Mfsd8	2810423E13Rik|AI836898|AV142426|Cln7	major facilitator superfamily domain containing 8	protein-coding
diff_RLAGL_Vector_cond1_2462	chr12	112762057	112762257	+	10.41905	NA	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	1502	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding
diff_RLAGL_Vector_cond1_8117	chr5	150027143	150027608	+	10.41442	NA	intron (NM_080468, intron 1 of 17)	intron (NM_080468, intron 1 of 17)	8700	NM_001289566	140498	Mm.444643	NM_080468		Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding
diff_RLAGL_Vector_cond1_6763	chr3	156999348	156999735	+	10.41327	NA	intron (NM_001039094, intron 2 of 6)	MLT1G|LTR|ERVL-MaLR	437747	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding
diff_RLAGL_Vector_cond1_10431	chrX	50840963	50841445	+	10.41154	NA	promoter-TSS (NM_133729)	promoter-TSS (NM_133729)	-167	NM_133729	70415	Mm.46254	NM_133729		Stk26	2610018G03Rik|Mst4	serine/threonine kinase 26	protein-coding
diff_RLAGL_Vector_cond1_6916	chr4	33924222	33924981	+	10.41081	NA	promoter-TSS (NM_007726)	promoter-TSS (NM_007726)	-31	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding
diff_RLAGL_Vector_cond1_4142	chr16	81309316	81309767	+	10.41015	NA	intron (NM_010954, intron 1 of 15)	MLT1I|LTR|ERVL-MaLR	108844	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_4491	chr17	54685721	54686009	+	10.40775	NA	Intergenic	MIRb|SINE|MIR	-315791	NR_045825	69418	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA
diff_RLAGL_Vector_cond1_2536	chr13	8516171	8516672	+	10.40488	NA	intron (NM_001289530, intron 1 of 9)	L1MD1|LINE|L1	313555	NR_110345	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
diff_RLAGL_Vector_cond1_3762	chr15	90658163	90658370	+	10.40321	NA	intron (NM_025815, intron 1 of 19)	MTD|LTR|ERVL-MaLR	21122	NM_001033851	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
diff_RLAGL_Vector_cond1_4627	chr17	79918434	79918870	+	10.40300	NA	Intergenic	Intergenic	-22529	NM_019717	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding
diff_RLAGL_Vector_cond1_6357	chr3	64192026	64192481	+	10.40126	NA	Intergenic	RLTR13A|LTR|ERVK	-54773	NM_001104592	100125586	Mm.469888	NM_001104592	ENSMUSG00000043897	Vmn2r2	ENSMUSG00000043897	vomeronasal 2, receptor 2	protein-coding
diff_RLAGL_Vector_cond1_10381	chr9	124105265	124105506	+	10.40069	NA	intron (NM_009915, intron 2 of 2)	intron (NM_009915, intron 2 of 2)	3202	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding
diff_RLAGL_Vector_cond1_8783	chr6	149188692	149188979	+	10.39887	NA	promoter-TSS (NM_001113424)	promoter-TSS (NM_001113424)	-123	NM_001113424	232566	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding
diff_RLAGL_Vector_cond1_700	chr1	176183995	176184527	+	10.39688	NA	intron (NM_176916, intron 1 of 9)	intron (NM_176916, intron 1 of 9)	29681	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding
diff_RLAGL_Vector_cond1_8217	chr6	23132915	23133136	+	10.39683	NA	promoter-TSS (NM_013930)	promoter-TSS (NM_013930)	-39	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding
diff_RLAGL_Vector_cond1_8265	chr6	37442110	37442589	+	10.39593	NA	promoter-TSS (NM_178661)	promoter-TSS (NM_178661)	-201	NM_178661	208647	Mm.169929	NM_178661		Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding
diff_RLAGL_Vector_cond1_6316	chr3	55984213	55984429	+	10.39434	NA	intron (NM_030595, intron 29 of 57)	intron (NM_030595, intron 29 of 57)	137216	NR_033592	71182	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo
diff_RLAGL_Vector_cond1_2959	chr13	117024577	117024935	+	10.39286	NA	intron (NM_001081009, intron 2 of 26)	CpG	760	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding
diff_RLAGL_Vector_cond1_6164	chr3	10273168	10273598	+	10.39094	NA	intron (NM_029310, intron 1 of 5)	Lx8|LINE|L1	27800	NM_029310	75497	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding
diff_RLAGL_Vector_cond1_6223	chr3	27153729	27154189	+	10.38519	NA	promoter-TSS (NM_007900)	promoter-TSS (NM_007900)	-67	NR_040548	76657	Mm.417839	NR_040548	ENSMUSG00000097584	1700125G22Rik	-	RIKEN cDNA 1700125G22 gene	ncRNA
diff_RLAGL_Vector_cond1_1027	chr10	45289288	45289651	+	10.38432	NA	5' UTR (NM_024286, exon 1 of 4)	5' UTR (NM_024286, exon 1 of 4)	164	NM_024286	78977	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_2620	chr13	30754858	30755166	+	10.38235	NA	intron (NM_013674, intron 5 of 8)	intron (NM_013674, intron 5 of 8)	5754	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|Spip	interferon regulatory factor 4	protein-coding
diff_RLAGL_Vector_cond1_1482	chr11	7944449	7944704	+	10.38139	NA	Intergenic	Intergenic	719959	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding
diff_RLAGL_Vector_cond1_653	chr1	168214229	168214478	+	10.37984	NA	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	217816	NM_008783	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_5672	chr2	105675186	105675703	+	10.37784	NA	promoter-TSS (NM_001244202)	promoter-TSS (NM_001244202)	-300	NM_001310144	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding
diff_RLAGL_Vector_cond1_9322	chr7	143186535	143186841	+	10.37562	NA	intron (NM_008434, intron 6 of 15)	intron (NM_008434, intron 6 of 15)	79434	NM_008434	16535	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding
diff_RLAGL_Vector_cond1_2710	chr13	60007607	60008046	+	10.36546	NA	Intergenic	Intergenic	-21885	NR_046142	328263	Mm.123405	NR_046142		A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA
diff_RLAGL_Vector_cond1_6277	chr3	50278118	50278633	+	10.36359	NA	Intergenic	MLTR11B|LTR|ERVK	165238	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
diff_RLAGL_Vector_cond1_3183	chr14	65262295	65262646	+	10.36223	NA	promoter-TSS (NM_021458)	promoter-TSS (NM_021458)	-7	NM_021458	14365	Mm.214687	NM_021458		Fzd3	AU020229|D930050A07Rik|Fz3	frizzled homolog 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_425	chr1	113778262	113778755	+	10.36171	NA	Intergenic	RMER2|LTR|ERV1	-1906629	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
diff_RLAGL_Vector_cond1_1316	chr10	107624229	107624589	+	10.35964	NA	intron (NM_001081432, intron 25 of 44)	ORR1D2|LTR|ERVL-MaLR	95618	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding
diff_RLAGL_Vector_cond1_2859	chr13	89709830	89710096	+	10.35935	NA	TTS (NM_172955)	TTS (NM_172955)	32549	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding
diff_RLAGL_Vector_cond1_5788	chr2	131492324	131492560	+	10.35811	NA	intron (NM_145533, intron 1 of 6)	CpG	580	NM_001177837	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding
diff_RLAGL_Vector_cond1_4700	chr17	93484598	93484842	+	10.35381	NA	Intergenic	Intergenic	285552	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_6318	chr3	56067785	56068214	+	10.35038	NA	intron (NM_030595, intron 8 of 57)	intron (NM_030595, intron 8 of 57)	115702	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
diff_RLAGL_Vector_cond1_8766	chr6	145746098	145746968	+	10.34740	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-61850	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding
diff_RLAGL_Vector_cond1_7998	chr5	131600390	131600770	+	10.34650	NA	intron (NM_177047, intron 5 of 18)	intron (NM_177047, intron 5 of 18)	-279689	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
diff_RLAGL_Vector_cond1_170	chr1	46853292	46854288	+	10.34415	NA	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	-281	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding
diff_RLAGL_Vector_cond1_7600	chr5	28689289	28689846	+	10.34115	NA	intron (NR_015562, intron 4 of 6)	intron (NR_015562, intron 4 of 6)	-222466	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding
diff_RLAGL_Vector_cond1_3620	chr15	59786756	59786991	+	10.33507	NA	Intergenic	Intergenic	8086	NR_045076	100503021	Mm.402924	NR_045076		Gm19510	-	predicted gene, 19510	ncRNA
diff_RLAGL_Vector_cond1_953	chr10	30200069	30200804	+	10.33375	NA	exon (NM_001109747, exon 1 of 3)	exon (NM_001109747, exon 1 of 3)	104	NM_001109747	66311	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding
diff_RLAGL_Vector_cond1_4921	chr18	65075970	65076350	+	10.32743	NA	intron (NM_031881, intron 2 of 29)	intron (NM_031881, intron 2 of 29)	52633	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding
diff_RLAGL_Vector_cond1_2315	chr12	76255124	76255408	+	10.32334	NA	promoter-TSS (NM_138745)	promoter-TSS (NM_138745)	34	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding
diff_RLAGL_Vector_cond1_6602	chr3	129836064	129836296	+	10.32317	NA	promoter-TSS (NM_007686)	promoter-TSS (NM_007686)	-559	NM_007686	12630	Mm.117180	NM_007686	ENSMUSG00000058952	Cfi	-	complement component factor i	protein-coding
diff_RLAGL_Vector_cond1_4138	chr16	79142646	79143285	+	10.31876	NA	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-51868	NM_178855	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
diff_RLAGL_Vector_cond1_6192	chr3	19782354	19782594	+	10.31519	NA	Intergenic	Intergenic	-87078	NM_205769	12918	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding
diff_RLAGL_Vector_cond1_9757	chr8	107048382	107048608	+	10.31446	NA	TTS (NM_139229)	TTS (NM_139229)	119	NM_026513	68023	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding
diff_RLAGL_Vector_cond1_9729	chr8	95852364	95852590	+	10.31446	NA	intron (NM_172758, intron 2 of 11)	intron (NM_172758, intron 2 of 11)	1014	NM_172758	234595	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding
diff_RLAGL_Vector_cond1_5605	chr2	85047659	85048067	+	10.31356	NA	TTS (NM_182990)	TTS (NM_182990)	-2597	NM_001081260	228140	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_4686	chr17	90267628	90267901	+	10.31328	NA	intron (NM_020252, intron 18 of 22)	intron (NM_020252, intron 18 of 22)	-593405	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
diff_RLAGL_Vector_cond1_8440	chr6	86487256	86487927	+	10.31223	NA	intron (NR_040292, intron 1 of 1)	intron (NR_040292, intron 1 of 1)	636	NR_040293	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA
diff_RLAGL_Vector_cond1_3022	chr14	16735326	16735587	+	10.31166	NA	intron (NM_001289760, intron 2 of 9)	intron (NM_001289760, intron 2 of 9)	-159980	NM_011243	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding
diff_RLAGL_Vector_cond1_10238	chr9	96196056	96196344	+	10.30747	NA	promoter-TSS (NM_001184708)	promoter-TSS (NM_001184708)	-75	NM_001184706	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding
diff_RLAGL_Vector_cond1_5410	chr2	36091321	36091816	+	10.30649	NA	intron (NM_008500, intron 6 of 9)	CpG-8045	12492	NM_001083127	16874	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding
diff_RLAGL_Vector_cond1_9414	chr8	23261838	23262094	+	10.30620	NA	Intergenic	Lx8|LINE|L1	-4886	NM_020585	57437	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding
diff_RLAGL_Vector_cond1_3727	chr15	81894058	81894290	+	10.29636	NA	intron (NM_080633, intron 2 of 17)	intron (NM_080633, intron 2 of 17)	21711	NM_080633	11429	Mm.154581	NM_080633	ENSMUSG00000022477	Aco2	Aco-2|Aco3|D10Wsu183e	aconitase 2, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_9422	chr8	23930370	23930847	+	10.29631	NA	intron (NM_177086, intron 5 of 6)	intron (NM_177086, intron 5 of 6)	260947	NM_001277239	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding
diff_RLAGL_Vector_cond1_5656	chr2	102745259	102745527	+	10.29119	NA	intron (NM_011393, intron 5 of 9)	intron (NM_011393, intron 5 of 9)	38955	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding
diff_RLAGL_Vector_cond1_6816	chr4	9668923	9669481	+	10.29115	NA	promoter-TSS (NM_001177856)	promoter-TSS (NM_001177856)	-40	NM_001177849	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding
diff_RLAGL_Vector_cond1_4262	chr17	13187655	13188132	+	10.28701	NA	Intergenic	Intergenic	-17149	NR_033458	100038394	Mm.401677	NR_033458		Gm10512	ENSMUSG00000073459	predicted gene 10512	ncRNA
diff_RLAGL_Vector_cond1_1662	chr11	54936893	54937189	+	10.28382	NA	intron (NM_001271455, intron 4 of 17)	intron (NM_001271455, intron 4 of 17)	25899	NM_001199275	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_1518	chr11	16800523	16800971	+	10.28072	NA	intron (NM_207655, intron 1 of 27)	intron (NM_207655, intron 1 of 27)	48544	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding
diff_RLAGL_Vector_cond1_3533	chr15	38374749	38375077	+	10.27754	NA	Intergenic	Intergenic	-74202	NM_013692	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding
diff_RLAGL_Vector_cond1_10210	chr9	89704651	89705225	+	10.27142	NA	5' UTR (NM_025360, exon 1 of 3)	5' UTR (NM_025360, exon 1 of 3)	105	NM_025360	66111	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane emp24 domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_9253	chr7	129984545	129984767	+	10.27004	NA	Intergenic	Intergenic	22491	NR_046077	100043150	Mm.334264	NR_046077		Gm4265	-	predicted gene 4265	ncRNA
diff_RLAGL_Vector_cond1_8764	chr6	145361154	145361490	+	10.26995	NA	Intergenic	MTD|LTR|ERVL-MaLR	-26303	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo
diff_RLAGL_Vector_cond1_2603	chr13	27312333	27312718	+	10.26438	NA	promoter-TSS (NM_011166)	promoter-TSS (NM_011166)	-102	NM_011166	19111	Mm.7512	NM_011166	ENSMUSG00000069259	Prl6a1	Ghd10|PLP-B|Prlpb	prolactin family 6, subfamily a, member 1	protein-coding
diff_RLAGL_Vector_cond1_1225	chr10	87051786	87052178	+	10.26411	NA	Intergenic	Intergenic	-6064	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding
diff_RLAGL_Vector_cond1_2580	chr13	20786883	20787278	+	10.26202	NA	Intergenic	Intergenic	-7033	NM_001281854	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding
diff_RLAGL_Vector_cond1_9222	chr7	124388869	124389303	+	10.25832	NA	intron (NM_001252072, intron 1 of 1)	intron (NM_001252072, intron 1 of 1)	319849	NR_045907	73076	Mm.417827	NR_045907	ENSMUSG00000086254	3100003L05Rik	-	RIKEN cDNA 3100003L05 gene	ncRNA
diff_RLAGL_Vector_cond1_5749	chr2	121806816	121807267	+	10.25761	NA	promoter-TSS (NM_172673)	promoter-TSS (NM_172673)	16	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_192	chr1	55749054	55749314	+	10.25383	NA	intron (NM_001114663, intron 5 of 5)	intron (NM_001114663, intron 5 of 5)	-182057	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
diff_RLAGL_Vector_cond1_7203	chr4	111373965	111374333	+	10.25208	NA	intron (NM_030231, intron 6 of 12)	intron (NM_030231, intron 6 of 12)	-40857	NR_033793	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_8450	chr6	87789068	87789595	+	10.25122	NA	non-coding (NR_104477, exon 3 of 3)	non-coding (NR_104477, exon 3 of 3)	11195	NM_018762	54368	Mm.12897	NM_018762	ENSMUSG00000030054	Gp9	Cd42|GPIX	glycoprotein 9 (platelet)	protein-coding
diff_RLAGL_Vector_cond1_2173	chr12	35376227	35376872	+	10.25061	NA	Intergenic	MERVL_2A-int|LTR|ERVL	158440	NM_013464	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding
diff_RLAGL_Vector_cond1_6075	chr2	173026620	173027249	+	10.25037	NA	intron (NM_019547, intron 3 of 3)	intron (NM_019547, intron 3 of 3)	5032	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding
diff_RLAGL_Vector_cond1_4988	chr18	79026790	79027290	+	10.25031	NA	intron (NM_053099, intron 2 of 5)	intron (NM_053099, intron 2 of 5)	82351	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_10010	chr9	35520765	35521303	+	10.24275	NA	Intergenic	Intergenic	37436	NM_013932	30959	Mm.291723	NM_013932		Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding
diff_RLAGL_Vector_cond1_4739	chr18	8935601	8935854	+	10.24042	NA	Intergenic	RMER17B|LTR|ERVK	-277129	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled homolog 8 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7839	chr5	93339337	93339565	+	10.23774	NA	Intergenic	Intergenic	71878	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding
diff_RLAGL_Vector_cond1_9424	chr8	24383686	24383978	+	10.23760	NA	Intergenic	Intergenic	55114	NM_026931	69068	Mm.25775	NM_026931		1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding
diff_RLAGL_Vector_cond1_5531	chr2	66256322	66257125	+	10.23679	NA	promoter-TSS (NM_001047604)	promoter-TSS (NM_001047604)	-106	NM_001047604	73668	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding
diff_RLAGL_Vector_cond1_5066	chr19	6921848	6922390	+	10.23452	NA	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-311	NM_007953	26379	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding
diff_RLAGL_Vector_cond1_3925	chr16	30050939	30051143	+	10.23001	NA	Intergenic	Intergenic	-11562	NR_045878	71528	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA
diff_RLAGL_Vector_cond1_5988	chr2	160248329	160248538	+	10.22746	NA	Intergenic	Intergenic	79061	NM_001033411	329554	Mm.291144	NM_001033411		Gm826	-	predicted gene 826	protein-coding
diff_RLAGL_Vector_cond1_2948	chr13	115562993	115563392	+	10.22466	NA	Intergenic	RLTR33|LTR|ERVK	-461228	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding
diff_RLAGL_Vector_cond1_8065	chr5	139460403	139460684	+	10.22232	NA	promoter-TSS (NM_028469)	promoter-TSS (NM_028469)	-9	NM_028469	73212	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding
diff_RLAGL_Vector_cond1_8686	chr6	135324931	135325375	+	10.21962	NA	Intergenic	Intergenic	-14769	NM_029595	76400	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_9942	chr9	17675581	17676020	+	10.21911	NA	Intergenic	Intergenic	-616467	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_8166	chr6	8951080	8951707	+	10.21795	NA	intron (NM_008751, intron 1 of 1)	CpG	1374	NM_008751	18231	Mm.46954	NM_008751		Nxph1	C130005L03Rik	neurexophilin 1	protein-coding
diff_RLAGL_Vector_cond1_5972	chr2	157027437	157027682	+	10.21755	NA	exon (NM_001164663, exon 11 of 15)	exon (NM_001164663, exon 11 of 15)	-20484	NM_025853	66934	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1922	chr11	108752264	108752617	+	10.21665	NA	intron (NM_029586, intron 1 of 4)	intron (NM_029586, intron 1 of 4)	69822	NM_029586	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding
diff_RLAGL_Vector_cond1_3399	chr14	123240729	123241040	+	10.21556	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	71698	NR_045143	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
diff_RLAGL_Vector_cond1_4973	chr18	76171712	76171977	+	10.21451	NA	Intergenic	MER5A|DNA|hAT-Charlie	1292	NR_105776	102465184		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA
diff_RLAGL_Vector_cond1_3606	chr15	56746748	56746974	+	10.21433	NA	Intergenic	Intergenic	-52315	NM_008216	15117	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding
diff_RLAGL_Vector_cond1_7791	chr5	74387199	74387603	+	10.21240	NA	intron (NM_001286437, intron 5 of 7)	intron (NM_001286437, intron 5 of 7)	144341	NM_178672	212986	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_992	chr10	37135212	37135447	+	10.21208	NA	3' UTR (NM_008538, exon 2 of 2)	3' UTR (NM_008538, exon 2 of 2)	3597	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
diff_RLAGL_Vector_cond1_1022	chr10	43684292	43684520	+	10.21037	NA	Intergenic	Intergenic	-61752	NR_040581	69443	Mm.484042	NR_040581		1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA
diff_RLAGL_Vector_cond1_7364	chr4	137664741	137664973	+	10.20954	NA	intron (NM_029563, intron 1 of 23)	CpG	131	NM_029563	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding
diff_RLAGL_Vector_cond1_75	chr1	20945971	20946290	+	10.20857	NA	Intergenic	Intergenic	-5496	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding
diff_RLAGL_Vector_cond1_8203	chr6	18420723	18420960	+	10.20805	NA	exon (NM_080285, exon 8 of 23)	exon (NM_080285, exon 8 of 23)	93984	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_539	chr1	143702521	143703093	+	10.20796	NA	promoter-TSS (NM_145991)	promoter-TSS (NM_145991)	86	NM_145991	214498	Mm.156727	NM_145991		Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding
diff_RLAGL_Vector_cond1_9404	chr8	19066105	19066321	+	10.20744	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-1403	NM_183038	360214	Mm.271559	NM_183038	ENSMUSG00000061847	Defb39	BD-39	defensin beta 39	protein-coding
diff_RLAGL_Vector_cond1_7052	chr4	72627622	72627844	+	10.20452	NA	Intergenic	Intergenic	224901	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding
diff_RLAGL_Vector_cond1_4706	chr17	94749551	94750382	+	10.20370	NA	promoter-TSS (NM_176917)	promoter-TSS (NM_176917)	-74	NM_176917	76781	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding
diff_RLAGL_Vector_cond1_9864	chr8	127942403	127942647	+	10.20189	NA	Intergenic	Intergenic	335700	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA
diff_RLAGL_Vector_cond1_237	chr1	68542987	68543330	+	10.20052	NA	intron (NM_010154, intron 3 of 26)	Lx8|LINE|L1	564901	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
diff_RLAGL_Vector_cond1_4985	chr18	78805269	78805749	+	10.19508	NA	intron (NM_053099, intron 4 of 5)	intron (NM_053099, intron 4 of 5)	-208559	NM_030683	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
diff_RLAGL_Vector_cond1_973	chr10	32283812	32284192	+	10.19279	NA	intron (NM_001013411, intron 3 of 6)	intron (NM_001013411, intron 3 of 6)	605913	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
diff_RLAGL_Vector_cond1_9360	chr8	7185350	7185568	+	10.18768	NA	Intergenic	Intergenic	1475314	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
diff_RLAGL_Vector_cond1_15	chr1	6510783	6511051	+	10.18732	NA	intron (NM_001244693, intron 2 of 22)	intron (NM_001244693, intron 2 of 22)	23686	NM_001244693	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
diff_RLAGL_Vector_cond1_8211	chr6	22025937	22026371	+	10.18547	NA	intron (NM_001081351, intron 2 of 21)	intron (NM_001081351, intron 2 of 21)	40244	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3171	chr14	62814632	62814838	+	10.17674	NA	intron (NR_045503, intron 3 of 6)	intron (NR_045503, intron 3 of 6)	-22955	NM_175546	268752	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_6871	chr4	22835829	22836324	+	10.17452	NA	Intergenic	Intergenic	345528	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
diff_RLAGL_Vector_cond1_4695	chr17	91466762	91467046	+	10.17297	NA	Intergenic	RLTR1F_Mm|LTR|ERVK	-374102	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
diff_RLAGL_Vector_cond1_8942	chr7	43443471	43443761	+	10.17154	NA	promoter-TSS (NR_075104)	promoter-TSS (NR_075104)	-456	NR_075104	110826	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_8925	chr7	39487186	39487525	+	10.16763	NA	Intergenic	Intergenic	-30411	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding
diff_RLAGL_Vector_cond1_9627	chr8	74315120	74315819	+	10.16706	NA	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-557705	NM_001294278	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding
diff_RLAGL_Vector_cond1_5338	chr2	22096709	22097243	+	10.16610	NA	Intergenic	Intergenic	-130527	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding
diff_RLAGL_Vector_cond1_8393	chr6	70956268	70956489	+	10.16379	NA	promoter-TSS (NM_001101464)	promoter-TSS (NM_001101464)	-228	NM_001101464	232077	Mm.297656	NM_001101464	ENSMUSG00000055874	Foxi3	-	forkhead box I3	protein-coding
diff_RLAGL_Vector_cond1_5004	chr18	82006498	82006886	+	10.16329	NA	Intergenic	Intergenic	-14612	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA
diff_RLAGL_Vector_cond1_255	chr1	71837270	71837581	+	10.16113	NA	Intergenic	Intergenic	-50687	NR_027659	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA
diff_RLAGL_Vector_cond1_448	chr1	120083004	120083495	+	10.16077	NA	Intergenic	Intergenic	-9469	NM_019432	170706	Mm.24750	NM_019432		Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding
diff_RLAGL_Vector_cond1_9795	chr8	116334801	116335127	+	10.15616	NA	Intergenic	Intergenic	-170051	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding
diff_RLAGL_Vector_cond1_9412	chr8	22060577	22060823	+	10.15532	NA	promoter-TSS (NM_183142)	promoter-TSS (NM_183142)	-21	NM_183142	207958	Mm.267439	NM_183142	ENSMUSG00000063362	Alg11	AI849156|AW492253|B230397C21|Mmat-4(5)	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)	protein-coding
diff_RLAGL_Vector_cond1_2680	chr13	54303050	54303259	+	10.15257	NA	Intergenic	CpG	-68195	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding
diff_RLAGL_Vector_cond1_6306	chr3	55096404	55096628	+	10.15213	NA	Intergenic	Intergenic	-15592	NM_144895	229285	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding
diff_RLAGL_Vector_cond1_5994	chr2	160887340	160887611	+	10.14825	NA	promoter-TSS (NM_001199118)	promoter-TSS (NM_001199118)	-693	NM_001199118	64899	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding
diff_RLAGL_Vector_cond1_2121	chr12	22623102	22623542	+	10.14684	NA	Intergenic	CpG	386921	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA
diff_RLAGL_Vector_cond1_7299	chr4	128597883	128598091	+	10.14596	NA	intron (NM_177758, intron 2 of 7)	RLTR22_Mur|LTR|ERVK	12111	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding
diff_RLAGL_Vector_cond1_7747	chr5	63824006	63824306	+	10.14524	NA	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	11661	NM_029554	76261	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding
diff_RLAGL_Vector_cond1_6738	chr3	153724942	153725330	+	10.14357	NA	promoter-TSS (NM_011372)	promoter-TSS (NM_011372)	-3	NM_011372	20447	Mm.296453	NM_011372		St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding
diff_RLAGL_Vector_cond1_9702	chr8	89279921	89280207	+	10.14347	NA	Intergenic	Intergenic	-235902	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5806	chr2	134681420	134681625	+	10.13822	NA	Intergenic	Intergenic	-37401	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
diff_RLAGL_Vector_cond1_4649	chr17	84647758	84647957	+	10.13459	NA	intron (NM_172256, intron 10 of 12)	intron (NM_172256, intron 10 of 12)	21358	NM_172256	213575	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding
diff_RLAGL_Vector_cond1_7876	chr5	103262683	103263013	+	10.13159	NA	intron (NR_040699, intron 4 of 6)	RLTR22_Mur|LTR|ERVK	36181	NR_040699	74624	Mm.389662	NR_040699	ENSMUSG00000104956	4930429D17Rik	-	RIKEN cDNA 4930429D17 gene	ncRNA
diff_RLAGL_Vector_cond1_7824	chr5	87720491	87720700	+	10.12824	NA	Intergenic	Intergenic	-21170	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding
diff_RLAGL_Vector_cond1_3064	chr14	28630387	28630593	+	10.12671	NA	Intergenic	Intergenic	119085	NM_001256224	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
diff_RLAGL_Vector_cond1_4378	chr17	33760312	33760785	+	10.12535	NA	promoter-TSS (NM_008997)	promoter-TSS (NM_008997)	-62	NM_008997	19326	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_5290	chr2	13630098	13630439	+	10.12031	NA	Intergenic	MER77|LTR|ERVL	55957	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding
diff_RLAGL_Vector_cond1_1306	chr10	106621041	106621544	+	10.11625	NA	intron (NM_001205341, intron 3 of 31)	intron (NM_001205341, intron 3 of 31)	-18812	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA
diff_RLAGL_Vector_cond1_2653	chr13	43304073	43304511	+	10.11389	NA	promoter-TSS (NM_001033399)	promoter-TSS (NM_001033399)	-120	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4853	chr18	43625209	43625422	+	10.10832	NA	intron (NM_001163637, intron 1 of 21)	intron (NM_001163637, intron 1 of 21)	62458	NM_001163637	76217	Mm.134602	NM_001163637	ENSMUSG00000024502	Jakmip2	6430702L21Rik|AI850334|D930046L20Rik	janus kinase and microtubule interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_1817	chr11	88861253	88861483	+	10.10517	NA	intron (NR_126433, intron 3 of 4)	intron (NR_126433, intron 3 of 4)	3218	NM_001042541	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding
diff_RLAGL_Vector_cond1_4908	chr18	62155917	62156277	+	10.10405	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	23884	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding
diff_RLAGL_Vector_cond1_3363	chr14	118667521	118667834	+	10.09964	NA	intron (NM_001163675, intron 3 of 30)	intron (NM_001163675, intron 3 of 30)	9254	NM_001163675	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
diff_RLAGL_Vector_cond1_10216	chr9	90316297	90316523	+	10.09701	NA	Intergenic	Intergenic	-45641	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding
diff_RLAGL_Vector_cond1_6059	chr2	171718799	171719656	+	10.09675	NA	Intergenic	Intergenic	243572	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA
diff_RLAGL_Vector_cond1_7866	chr5	102481782	102482074	+	10.09427	NA	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	537	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
diff_RLAGL_Vector_cond1_285	chr1	75559535	75559744	+	10.09384	NA	TTS (NM_009208)	TTS (NM_009208)	13373	NM_009208	20536	Mm.5053	NM_009208		Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding
diff_RLAGL_Vector_cond1_1645	chr11	51289519	51289937	+	10.09324	NA	promoter-TSS (NM_153393)	promoter-TSS (NM_153393)	-192	NM_153393	237759	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_3644	chr15	64909142	64909465	+	10.09309	NA	intron (NM_001291903, intron 1 of 16)	intron (NM_001291903, intron 1 of 16)	12993	NM_001291903	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding
diff_RLAGL_Vector_cond1_7273	chr4	123904705	123905062	+	10.09244	NA	promoter-TSS (NM_019660)	promoter-TSS (NM_019660)	-130	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	c-myc binding protein	protein-coding
diff_RLAGL_Vector_cond1_177	chr1	51478233	51478863	+	10.09142	NA	promoter-TSS (NM_028696)	promoter-TSS (NM_028696)	-149	NM_001310548	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_338	chr1	88304916	88305418	+	10.08281	NA	Intergenic	Intergenic	-1545	NM_134252	171382	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding
diff_RLAGL_Vector_cond1_1080	chr10	60328986	60329196	+	10.08141	NA	intron (NR_045556, intron 43 of 68)	intron (NR_045556, intron 43 of 68)	-17760	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding
diff_RLAGL_Vector_cond1_8164	chr6	8777724	8778170	+	10.08101	NA	intron (NM_010492, intron 1 of 13)	CpG	537	NM_010492	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding
diff_RLAGL_Vector_cond1_3870	chr16	13940533	13941018	+	10.07988	NA	exon (NM_001289561, exon 1 of 4)	exon (NM_001289561, exon 1 of 4)	110	NM_001289567	93734	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding
diff_RLAGL_Vector_cond1_6854	chr4	16927715	16927914	+	10.07912	NA	Intergenic	RMER17D2|LTR|ERVK	763704	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA
diff_RLAGL_Vector_cond1_7208	chr4	111663899	111664345	+	10.07691	NA	Intergenic	Intergenic	-55888	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding
diff_RLAGL_Vector_cond1_4334	chr17	25735747	25736134	+	10.07284	NA	promoter-TSS (NM_177822)	promoter-TSS (NM_177822)	-100	NM_177822	328783	Mm.183275	NM_177822	ENSMUSG00000041062	Mslnl	4732467B22	mesothelin-like	protein-coding
diff_RLAGL_Vector_cond1_7775	chr5	72350396	72350624	+	10.07254	NA	intron (NM_016869, intron 10 of 21)	intron (NM_016869, intron 10 of 21)	147167	NM_153389	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding
diff_RLAGL_Vector_cond1_10024	chr9	37530883	37531198	+	10.06680	NA	intron (NM_027102, intron 1 of 6)	intron (NM_027102, intron 1 of 6)	2951	NM_027102	69524	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_4101	chr16	70313870	70314564	+	10.06511	NA	exon (NM_028803, exon 1 of 16)	exon (NM_028803, exon 1 of 16)	268	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding
diff_RLAGL_Vector_cond1_3903	chr16	23913429	23913630	+	10.06344	NA	Intergenic	RMER10B|LTR|ERVL	17265	NM_001008230	224055	Mm.39248	NM_001008230	ENSMUSG00000047531	Rtp2	Gm605	receptor transporter protein 2	protein-coding
diff_RLAGL_Vector_cond1_6373	chr3	68353313	68353841	+	10.06106	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	-114606	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_1894	chr11	102466893	102467580	+	10.05832	NA	intron (NM_010575, intron 4 of 29)	CpG	2647	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding
diff_RLAGL_Vector_cond1_2755	chr13	65112876	65113187	+	10.05453	NA	promoter-TSS (NM_133680)	promoter-TSS (NM_133680)	-49	NM_001083901	66631	Mm.239196	NM_133680	ENSMUSG00000038212	Hiatl1	5730414C17Rik|AU045608|AW539692	hippocampus abundant transcript-like 1	protein-coding
diff_RLAGL_Vector_cond1_9875	chr9	3235305	3235609	+	10.05221	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-35644	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA
diff_RLAGL_Vector_cond1_3079	chr14	34152376	34152692	+	10.04770	NA	promoter-TSS (NM_008919)	promoter-TSS (NM_008919)	-115	NM_008919	19065	Mm.57059	NM_008919		Npy4r	NYYR-D|Ppyr1|Y4	neuropeptide Y receptor Y4	protein-coding
diff_RLAGL_Vector_cond1_2305	chr12	72664684	72664960	+	10.04621	NA	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	6	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding
diff_RLAGL_Vector_cond1_3906	chr16	24469451	24469684	+	10.04619	NA	intron (NM_001145952, intron 2 of 11)	intron (NM_001145952, intron 2 of 11)	21476	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding
diff_RLAGL_Vector_cond1_4740	chr18	9211979	9212382	+	10.03971	NA	promoter-TSS (NM_008058)	promoter-TSS (NM_008058)	-676	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled homolog 8 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4501	chr17	56078933	56079326	+	10.03142	NA	promoter-TSS (NM_001304785)	promoter-TSS (NM_001304785)	-502	NM_001304785	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding
diff_RLAGL_Vector_cond1_4249	chr17	11032503	11032765	+	10.03098	NA	intron (NM_016694, intron 1 of 11)	intron (NM_016694, intron 1 of 11)	192250	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding
diff_RLAGL_Vector_cond1_9331	chr7	145206002	145206541	+	10.02893	NA	non-coding (NR_033626, exon 3 of 3)	non-coding (NR_033626, exon 3 of 3)	1848	NR_033626	100040049	Mm.102235	NR_033626		1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA
diff_RLAGL_Vector_cond1_7079	chr4	81995193	81995593	+	10.02731	NA	Intergenic	Tigger5b|DNA|TcMar-Tigger	-69987	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA
diff_RLAGL_Vector_cond1_2102	chr12	16870368	16870665	+	10.02002	NA	Intergenic	Intergenic	-24462	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding
diff_RLAGL_Vector_cond1_9287	chr7	136727694	136728453	+	10.01976	NA	Intergenic	L1MB1|LINE|L1	-17469	NR_046021	621677	Mm.207290	NR_046021		Gm6249	EG621677	predicted gene 6249	ncRNA
diff_RLAGL_Vector_cond1_8187	chr6	17072868	17073112	+	10.01696	NA	intron (NM_207176, intron 1 of 6)	intron (NM_207176, intron 1 of 6)	7841	NM_207176	21753	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding
diff_RLAGL_Vector_cond1_2507	chr13	3216176	3216400	+	10.01445	NA	Intergenic	Intergenic	66813	NR_001581	73266	Mm.335891	NR_001581		Speer6-ps1	1700039A02Rik|SPEER-6	spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1	pseudo
diff_RLAGL_Vector_cond1_6273	chr3	45378185	45378429	+	10.01437	NA	promoter-TSS (NR_045172)	promoter-TSS (NR_045172)	-47	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA
diff_RLAGL_Vector_cond1_3512	chr15	31423028	31423293	+	10.01290	NA	Intergenic	Intergenic	30529	NM_145852	252967	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding
diff_RLAGL_Vector_cond1_5529	chr2	66144860	66145105	+	10.01246	NA	Intergenic	Intergenic	-20189	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
diff_RLAGL_Vector_cond1_1420	chr10	127049856	127050069	+	10.01093	NA	intron (NM_010009, intron 3 of 8)	intron (NM_010009, intron 3 of 8)	1716	NM_010009	13115	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_1058	chr10	56207013	56207218	+	10.00926	NA	intron (NM_001033385, intron 3 of 32)	intron (NM_001033385, intron 3 of 32)	21574	NM_001033385	544696	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding
diff_RLAGL_Vector_cond1_2192	chr12	38788699	38788961	+	10.00862	NA	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	5119	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
diff_RLAGL_Vector_cond1_2712	chr13	60110367	60110808	+	10.00805	NA	non-coding (NR_046142, exon 2 of 3)	non-coding (NR_046142, exon 2 of 3)	66948	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding
diff_RLAGL_Vector_cond1_8523	chr6	101271607	101272174	+	10.00669	NA	intron (NM_018884, intron 3 of 9)	intron (NM_018884, intron 3 of 9)	106007	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
diff_RLAGL_Vector_cond1_5408	chr2	35691753	35691975	+	10.00309	NA	promoter-TSS (NM_001001602)	promoter-TSS (NM_001001602)	-130	NM_001001602	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_2091	chr12	14189397	14189897	+	10.00239	NA	Intergenic	Intergenic	-37609	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding
diff_RLAGL_Vector_cond1_6917	chr4	34092981	34093335	+	9.99923	NA	Intergenic	Intergenic	-43091	NM_026293	67652	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding
diff_RLAGL_Vector_cond1_6838	chr4	13593107	13593839	+	9.99892	NA	Intergenic	Intergenic	-149829	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
diff_RLAGL_Vector_cond1_9129	chr7	92669914	92670510	+	9.99423	NA	promoter-TSS (NM_029078)	promoter-TSS (NM_029078)	-300	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	cleavage and polyadenylation factor subunit homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_131	chr1	36090649	36090978	+	9.99402	NA	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	22413	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_2554	chr13	13093575	13093953	+	9.99138	NA	Intergenic	MTD|LTR|ERVL-MaLR	-88434	NM_031191	18811	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding
diff_RLAGL_Vector_cond1_6834	chr4	13329382	13329927	+	9.99065	NA	Intergenic	MLTR73|LTR|ERV1	-413648	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
diff_RLAGL_Vector_cond1_2993	chr14	8258710	8259085	+	9.98833	NA	promoter-TSS (NM_001161667)	promoter-TSS (NM_001161667)	-58	NM_001161667	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding
diff_RLAGL_Vector_cond1_8971	chr7	48138480	48138729	+	9.98788	NA	Intergenic	RLTR46A2|LTR|ERVK	30381	NM_207538	404239	Mm.377927	NM_207538	ENSMUSG00000070551	Mrgprb5	Mgrg11|MrgB5	MAS-related GPR, member B5	protein-coding
diff_RLAGL_Vector_cond1_1598	chr11	35605301	35605710	+	9.98771	NA	intron (NM_011412, intron 12 of 35)	intron (NM_011412, intron 12 of 35)	-11311	NR_029799	723924		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA
diff_RLAGL_Vector_cond1_5935	chr2	151563069	151563288	+	9.98526	NA	Intergenic	B3|SINE|B2	-9445	NM_145535	228765	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding
diff_RLAGL_Vector_cond1_10013	chr9	35789750	35790585	+	9.98409	NA	promoter-TSS (NM_026593)	promoter-TSS (NM_026593)	-55	NM_026593	68171	Mm.99495	NM_026593	ENSMUSG00000032108	D730048I06Rik	Pate-C|mANLP2	RIKEN cDNA D730048I06 gene	protein-coding
diff_RLAGL_Vector_cond1_9736	chr8	103273499	103273820	+	9.98321	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	73875	NR_036588	69794	Mm.396139	NR_036588		1600027J07Rik	-	RIKEN cDNA 1600027J07 gene	ncRNA
diff_RLAGL_Vector_cond1_8672	chr6	133623212	133623552	+	9.98153	NA	Intergenic	RLTR9C|LTR|ERVK	94193	NM_001185040	545884	Mm.482064	NM_001185040		Gm5885	EG545884	predicted gene 5885	protein-coding
diff_RLAGL_Vector_cond1_6391	chr3	74588607	74589231	+	9.97936	NA	Intergenic	Intergenic	554853	NM_172515	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding
diff_RLAGL_Vector_cond1_6342	chr3	61315067	61315395	+	9.97911	NA	Intergenic	Intergenic	-49276	NM_028712	74012	Mm.422674	NM_028712		Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_4602	chr17	75467603	75467909	+	9.97703	NA	intron (NM_207246, intron 1 of 17)	Tigger5|DNA|TcMar-Tigger	2218	NM_207246	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding
diff_RLAGL_Vector_cond1_5581	chr2	79722528	79722759	+	9.97361	NA	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	14863	NR_110980	75276	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding
diff_RLAGL_Vector_cond1_3508	chr15	28404630	28404923	+	9.97137	NA	intron (NM_133365, intron 61 of 78)	intron (NM_133365, intron 61 of 78)	201010	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
diff_RLAGL_Vector_cond1_2754	chr13	64364329	64364568	+	9.97083	NA	intron (NM_009984, intron 7 of 7)	B4A|SINE|B4	6072	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding
diff_RLAGL_Vector_cond1_10156	chr9	73113273	73113507	+	9.96662	NA	promoter-TSS (NM_198609)	promoter-TSS (NM_198609)	-79	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1633	chr11	46436790	46437161	+	9.96658	NA	promoter-TSS (NM_001104557)	promoter-TSS (NM_001104557)	14	NM_025426	66213	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding
diff_RLAGL_Vector_cond1_7092	chr4	83987275	83987749	+	9.96343	NA	Intergenic	Intergenic	57367	NR_130998	78238	Mm.243903	NR_130998		6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA
diff_RLAGL_Vector_cond1_5689	chr2	109578867	109579374	+	9.96328	NA	Intergenic	Intergenic	-95580	NM_007540	12064	Mm.1442	NM_007540	ENSMUSG00000048482	Bdnf	-	brain derived neurotrophic factor	protein-coding
diff_RLAGL_Vector_cond1_6804	chr4	6076951	6077263	+	9.96006	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-113998	NM_026534	68053	Mm.404043	NM_026534		Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding
diff_RLAGL_Vector_cond1_4069	chr16	62846966	62847287	+	9.95548	NA	promoter-TSS (NM_026577)	promoter-TSS (NM_026577)	-86	NM_026577	68146	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding
diff_RLAGL_Vector_cond1_3885	chr16	18186024	18186293	+	9.95383	NA	Intergenic	Intergenic	-20988	NR_105785	102465189		NR_105785	ENSMUSG00000099293	Mir6366	Gm27720|mmu-mir-6366	microRNA 6366	ncRNA
diff_RLAGL_Vector_cond1_4616	chr17	78273788	78274262	+	9.95049	NA	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	73777	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
diff_RLAGL_Vector_cond1_3995	chr16	45844365	45844782	+	9.95008	NA	promoter-TSS (NM_001252442)	promoter-TSS (NM_001252442)	-195	NM_001252442	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
diff_RLAGL_Vector_cond1_9087	chr7	79868544	79868910	+	9.94903	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-26375	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding
diff_RLAGL_Vector_cond1_4136	chr16	79063930	79064167	+	9.94557	NA	intron (NM_178855, intron 7 of 26)	intron (NM_178855, intron 7 of 26)	27049	NM_008941	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
diff_RLAGL_Vector_cond1_2487	chr12	117993541	117993795	+	9.94374	NA	intron (NM_010060, intron 55 of 81)	intron (NM_010060, intron 55 of 81)	149807	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding
diff_RLAGL_Vector_cond1_3253	chr14	82895396	82896151	+	9.94364	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-1547790	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
diff_RLAGL_Vector_cond1_641	chr1	165763611	165763854	+	9.94269	NA	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-48	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding
diff_RLAGL_Vector_cond1_2496	chr12	118566782	118566988	+	9.94069	NA	Intergenic	Intergenic	-36692	NR_045947	100384890	Mm.484658	NR_045947		D230030E09Rik	Npe	Riken cDNA D230030E09 gene	ncRNA
diff_RLAGL_Vector_cond1_7842	chr5	96617181	96617540	+	9.93952	NA	intron (NM_175473, intron 19 of 73)	intron (NM_175473, intron 19 of 73)	-176025	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding
diff_RLAGL_Vector_cond1_5201	chr19	52627148	52627419	+	9.93685	NA	Intergenic	Intergenic	-295898	NR_030678	100043450	Mm.145594	NR_030678		AA387883	-	expressed sequence AA387883	ncRNA
diff_RLAGL_Vector_cond1_1467	chr11	6504760	6505125	+	9.93408	NA	Intergenic	RLTR49|LTR|ERVK	16016	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding
diff_RLAGL_Vector_cond1_9389	chr8	14911506	14911836	+	9.93254	NA	promoter-TSS (NM_001037736)	promoter-TSS (NM_001037736)	8	NM_172751	234094	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding
diff_RLAGL_Vector_cond1_2031	chr11	121847760	121848277	+	9.92923	NA	Intergenic	Intergenic	17800	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_9395	chr8	18258593	18258886	+	9.92856	NA	Intergenic	Intergenic	-336434	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding
diff_RLAGL_Vector_cond1_834	chr1	195131489	195131725	+	9.92820	NA	promoter-TSS (NM_013499)	promoter-TSS (NM_013499)	-37	NM_013499	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding
diff_RLAGL_Vector_cond1_2983	chr14	4267052	4267290	+	9.92522	NA	Intergenic	ID_B1|SINE|B4	-67592	NM_001309398	554327	Mm.460196	NM_001309398	ENSMUSG00000079388	2610042L04Rik	Tksn|takusan	RIKEN cDNA 2610042L04 gene	protein-coding
diff_RLAGL_Vector_cond1_4570	chr17	69969146	69969365	+	9.91987	NA	Intergenic	CpG	-455537	NM_027712	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_64	chr1	17506178	17506449	+	9.91915	NA	Intergenic	Intergenic	-95588	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding
diff_RLAGL_Vector_cond1_2842	chr13	83655123	83655377	+	9.91718	NA	intron (NM_001170537, intron 8 of 10)	intron (NM_001170537, intron 8 of 10)	-72856	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA
diff_RLAGL_Vector_cond1_9367	chr8	8851405	8851656	+	9.91426	NA	Intergenic	Intergenic	-160993	NM_176849	234023	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding
diff_RLAGL_Vector_cond1_8249	chr6	31563733	31564147	+	9.91315	NA	promoter-TSS (NM_013723)	promoter-TSS (NM_013723)	-3	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding
diff_RLAGL_Vector_cond1_8464	chr6	90325090	90325306	+	9.91121	NA	promoter-TSS (NM_027928)	promoter-TSS (NM_027928)	-13	NM_027928	71797	Mm.49071	NM_027928	ENSMUSG00000056643	Chst13	1110067M19Rik|C4ST-3	carbohydrate (chondroitin 4) sulfotransferase 13	protein-coding
diff_RLAGL_Vector_cond1_4303	chr17	21516876	21517082	+	9.90743	NA	Intergenic	Intergenic	-18560	NM_144515	22710	Mm.296100	NM_144515		Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding
diff_RLAGL_Vector_cond1_3458	chr15	10225814	10226046	+	9.90737	NA	intron (NM_001253781, intron 1 of 9)	intron (NM_001253781, intron 1 of 9)	2024	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding
diff_RLAGL_Vector_cond1_4433	chr17	45232966	45233226	+	9.90595	NA	Intergenic	Intergenic	200611	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding
diff_RLAGL_Vector_cond1_5068	chr19	7136076	7136306	+	9.90491	NA	intron (NM_134147, intron 3 of 10)	intron (NM_134147, intron 3 of 10)	-30462	NM_201411	396184	Mm.386930	NM_201411	ENSMUSG00000047787	Flrt1	AW742165|D630040I23Rik	fibronectin leucine rich transmembrane protein 1	protein-coding
diff_RLAGL_Vector_cond1_557	chr1	147371279	147371539	+	9.90310	NA	Intergenic	Intergenic	873722	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_6846	chr4	15265516	15265761	+	9.90155	NA	promoter-TSS (NM_181401)	promoter-TSS (NM_181401)	-182	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding
diff_RLAGL_Vector_cond1_5470	chr2	53129166	53129654	+	9.89532	NA	intron (NM_172409, intron 25 of 26)	intron (NM_172409, intron 25 of 26)	61777	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP11|Fnbp11|Fnbp3	PRP40 pre-mRNA processing factor 40 homolog A (yeast)	protein-coding
diff_RLAGL_Vector_cond1_5460	chr2	51588999	51589284	+	9.89448	NA	Intergenic	Intergenic	-38370	NM_199158	387511	Mm.377918	NM_199158	ENSMUSG00000056115	Tas2r134	T2R134|Tas2r34	taste receptor, type 2, member 134	protein-coding
diff_RLAGL_Vector_cond1_8205	chr6	18946375	18946592	+	9.89356	NA	Intergenic	Intergenic	80165	NM_001167757	75196	Mm.67665	NM_029202	ENSMUSG00000029517	Ankrd7	4930532L20Rik|AV278427	ankyrin repeat domain 7	protein-coding
diff_RLAGL_Vector_cond1_6937	chr4	41760375	41760681	+	9.89327	NA	promoter-TSS (NM_001172054)	promoter-TSS (NM_001172054)	85	NM_001172054	16157	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding
diff_RLAGL_Vector_cond1_6199	chr3	20623953	20624206	+	9.89157	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-256902	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
diff_RLAGL_Vector_cond1_5650	chr2	101660417	101660824	+	9.88807	NA	Intergenic	Intergenic	-11088	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding
diff_RLAGL_Vector_cond1_8425	chr6	82875507	82875730	+	9.88319	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	6235	NR_040520	69652	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA
diff_RLAGL_Vector_cond1_4423	chr17	43270178	43270627	+	9.88206	NA	promoter-TSS (NM_133776)	promoter-TSS (NM_133776)	55	NM_133776	77596	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding
diff_RLAGL_Vector_cond1_5942	chr2	152544678	152545065	+	9.88058	NA	Intergenic	Intergenic	-4830	NM_001001444	75400	Mm.45560	NM_001001444	ENSMUSG00000044249	Defb29	0610030I09Rik|BD-29|mBD-29	defensin beta 29	protein-coding
diff_RLAGL_Vector_cond1_9896	chr9	6406626	6406861	+	9.87948	NA	Intergenic	Intergenic	-140196	NM_027942	71829	Mm.141452	NM_027942	ENSMUSG00000047619	Ddi1	1700011N24Rik	DDI1, DNA-damage inducible 1, homolog 1 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1215	chr10	86339595	86339838	+	9.87690	NA	intron (NM_011595, intron 2 of 4)	intron (NM_011595, intron 2 of 4)	39304	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding
diff_RLAGL_Vector_cond1_6057	chr2	170877554	170877829	+	9.87578	NA	intron (NM_001163686, intron 7 of 7)	intron (NM_001163686, intron 7 of 7)	145884	NM_029761	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding
diff_RLAGL_Vector_cond1_715	chr1	177796442	177796950	+	9.86778	NA	promoter-TSS (NM_007422)	promoter-TSS (NM_007422)	-187	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding
diff_RLAGL_Vector_cond1_3435	chr15	7064466	7064723	+	9.86515	NA	Intergenic	Intergenic	-64978	NM_001113386	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding
diff_RLAGL_Vector_cond1_6088	chr2	174018007	174018405	+	9.86501	NA	Intergenic	Intergenic	-58845	NM_001102424	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding
diff_RLAGL_Vector_cond1_6732	chr3	152308443	152308875	+	9.86275	NA	intron (NM_174868, intron 7 of 15)	intron (NM_174868, intron 7 of 15)	31748	NM_174868	215708	Mm.135018	NM_174868	ENSMUSG00000054942	Fam73a	A930038D06|AI852168|C030011O14Rik	family with sequence similarity 73, member A	protein-coding
diff_RLAGL_Vector_cond1_2942	chr13	114680179	114680773	+	9.86213	NA	intron (NR_045976, intron 3 of 6)	MLT1H2|LTR|ERVL-MaLR	73248	NR_045976	75161	Mm.50406	NM_175218	ENSMUSG00000051758	4930544M13Rik	-	RIKEN cDNA 4930544M13 gene	ncRNA
diff_RLAGL_Vector_cond1_9650	chr8	79452222	79452464	+	9.85317	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-52875	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding
diff_RLAGL_Vector_cond1_8815	chr7	12422193	12422879	+	9.84732	NA	promoter-TSS (NM_001033820)	promoter-TSS (NM_001033820)	-45	NM_001033820	619331	Mm.361832	NM_001033820	ENSMUSG00000034071	Zfp551	9630004E07Rik|Znf551	zinc fingr protein 551	protein-coding
diff_RLAGL_Vector_cond1_2159	chr12	31990647	31990910	+	9.84674	NA	intron (NM_011158, intron 3 of 10)	intron (NM_011158, intron 3 of 10)	-40243	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_3612	chr15	58208017	58208287	+	9.84641	NA	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	6740	NM_026346	67731	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding
diff_RLAGL_Vector_cond1_4311	chr17	22037179	22037739	+	9.84501	NA	Intergenic	Intergenic	74900	NM_001025373	74670	Mm.26540	NM_001025373	ENSMUSG00000053347	Zfp943	4930432O21Rik	zinc finger prtoein 943	protein-coding
diff_RLAGL_Vector_cond1_4167	chr16	87934762	87935176	+	9.84348	NA	intron (NM_010348, intron 13 of 15)	intron (NM_010348, intron 13 of 15)	236015	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1	protein-coding
diff_RLAGL_Vector_cond1_1549	chr11	23665283	23665497	+	9.84253	NA	promoter-TSS (NM_028304)	promoter-TSS (NM_028304)	-284	NM_028956	74467	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding
diff_RLAGL_Vector_cond1_2149	chr12	29798883	29799383	+	9.84171	NA	intron (NM_008666, intron 8 of 24)	intron (NM_008666, intron 8 of 24)	-112688	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA
diff_RLAGL_Vector_cond1_9589	chr8	67497796	67498231	+	9.83986	NA	intron (NM_010874, intron 1 of 1)	intron (NM_010874, intron 1 of 1)	3065	NM_010874	17961	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding
diff_RLAGL_Vector_cond1_1149	chr10	79097319	79097885	+	9.83687	NA	promoter-TSS (NM_001004362)	promoter-TSS (NM_001004362)	-2	NM_001004362	72128	Mm.297854	NM_001004362	ENSMUSG00000060301	2610008E11Rik	-	RIKEN cDNA 2610008E11 gene	protein-coding
diff_RLAGL_Vector_cond1_7911	chr5	110091620	110091889	+	9.83466	NA	Intergenic	LTR10_RN|LTR|ERVK	-8215	NM_207279	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4113	chr16	75766691	75767277	+	9.83350	NA	promoter-TSS (NR_027492)	promoter-TSS (NR_027492)	-166	NM_030201	110920	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding
diff_RLAGL_Vector_cond1_10607	chrX	163502181	163502465	+	9.82975	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	47413	NM_008177	14829	Mm.4687	NM_008177	ENSMUSG00000031364	Grpr	GRP-R	gastrin releasing peptide receptor	protein-coding
diff_RLAGL_Vector_cond1_5837	chr2	137794866	137795067	+	9.82762	NA	Intergenic	Intergenic	-461618	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_1394	chr10	121796039	121796372	+	9.82690	NA	intron (NM_001081037, intron 18 of 21)	intron (NM_001081037, intron 18 of 21)	56268	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding
diff_RLAGL_Vector_cond1_2778	chr13	67552714	67553317	+	9.82239	NA	promoter-TSS (NR_131099)	promoter-TSS (NR_131099)	137	NM_001035231	212276	Mm.422831	NM_183145	ENSMUSG00000095432	Zfp748	KRAB-O|Rslcan20/21|Zfp208|mszf54	zinc finger protein 748	protein-coding
diff_RLAGL_Vector_cond1_1046	chr10	53115196	53115405	+	9.81856	NA	Intergenic	Lx8|LINE|L1	-164970	NR_038015	100502820	Mm.55827	NR_038015		Gm19395	-	predicted gene, 19395	ncRNA
diff_RLAGL_Vector_cond1_1111	chr10	70599538	70599762	+	9.81538	NA	promoter-TSS (NM_178621)	promoter-TSS (NM_178621)	-359	NM_178621	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding
diff_RLAGL_Vector_cond1_369	chr1	93754730	93754938	+	9.81287	NA	promoter-TSS (NM_025920)	promoter-TSS (NM_025920)	4	NM_025920	67026	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_1131	chr10	76537627	76538080	+	9.81212	NA	intron (NM_146006, intron 5 of 21)	intron (NM_146006, intron 5 of 21)	6248	NM_146006	16987	Mm.55075	NM_146006		Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding
diff_RLAGL_Vector_cond1_6375	chr3	68493716	68494439	+	9.81082	NA	promoter-TSS (NM_001282044)	promoter-TSS (NM_001282044)	-104	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_9593	chr8	68361918	68362131	+	9.81081	NA	intron (NM_001252623, intron 10 of 10)	intron (NM_001252623, intron 10 of 10)	-6435	NR_038181	73609	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA
diff_RLAGL_Vector_cond1_3878	chr16	16829056	16829271	+	9.81036	NA	intron (NM_015773, intron 1 of 10)	CpG	200	NM_015773	50525	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6	PF16	sperm associated antigen 6	protein-coding
diff_RLAGL_Vector_cond1_9164	chr7	104446075	104446282	+	9.80990	NA	intron (NM_009099, intron 1 of 7)	intron (NM_009099, intron 1 of 7)	19015	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding
diff_RLAGL_Vector_cond1_4626	chr17	79355674	79356131	+	9.80575	NA	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	-811	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
diff_RLAGL_Vector_cond1_5591	chr2	83812606	83813075	+	9.80548	NA	exon (NM_175514, exon 1 of 8)	exon (NM_175514, exon 1 of 8)	112	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding
diff_RLAGL_Vector_cond1_456	chr1	121180380	121180616	+	9.80299	NA	Intergenic	Intergenic	93093	NR_038008	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA
diff_RLAGL_Vector_cond1_9197	chr7	113048396	113048776	+	9.80231	NA	Intergenic	Intergenic	93429	NR_045978	75239	Mm.381688	NR_045978		4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA
diff_RLAGL_Vector_cond1_18	chr1	6906421	6906708	+	9.80087	NA	Intergenic	Intergenic	176513	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
diff_RLAGL_Vector_cond1_3572	chr15	47760806	47761100	+	9.80039	NA	intron (NM_001081391, intron 32 of 70)	intron (NM_001081391, intron 32 of 70)	1031036	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
diff_RLAGL_Vector_cond1_8007	chr5	132542999	132543452	+	9.79976	NA	promoter-TSS (NM_177047)	promoter-TSS (NM_177047)	-882	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
diff_RLAGL_Vector_cond1_7989	chr5	129941836	129942187	+	9.79749	NA	promoter-TSS (NM_027121)	promoter-TSS (NM_027121)	-98	NM_001001327	69568	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding
diff_RLAGL_Vector_cond1_8171	chr6	12650185	12650405	+	9.79654	NA	intron (NM_001164805, intron 1 of 26)	intron (NM_001164805, intron 1 of 26)	98958	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
diff_RLAGL_Vector_cond1_5262	chr2	7246170	7246588	+	9.78863	NA	intron (NM_001110231, intron 2 of 15)	MER58A|DNA|hAT-Charlie	149621	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
diff_RLAGL_Vector_cond1_8499	chr6	96587548	96587885	+	9.78623	NA	intron (NM_182808, intron 3 of 4)	intron (NM_182808, intron 3 of 4)	-421511	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo
diff_RLAGL_Vector_cond1_1132	chr10	76798830	76799105	+	9.78218	NA	intron (NM_021568, intron 5 of 15)	intron (NM_021568, intron 5 of 15)	-72923	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_8392	chr6	68478841	68479138	+	9.78036	NA	Intergenic	Intergenic	848185	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA
diff_RLAGL_Vector_cond1_4699	chr17	93068652	93068879	+	9.77623	NA	Intergenic	ERVB4_3-I_MM-int|LTR|ERVK	-130252	NM_001315503	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_1718	chr11	69401421	69401633	+	9.77573	NA	exon (NM_001017426, exon 17 of 23)	exon (NM_001017426, exon 17 of 23)	-3293	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding
diff_RLAGL_Vector_cond1_9602	chr8	70394484	70394779	+	9.77535	NA	intron (NM_001004062, intron 8 of 13)	intron (NM_001004062, intron 8 of 13)	21083	NM_016685	12845	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding
diff_RLAGL_Vector_cond1_2774	chr13	67484162	67484410	+	9.77424	NA	promoter-TSS (NM_001076791)	promoter-TSS (NM_001076791)	-33	NM_001076791	408067	Mm.315879	NM_001076791	ENSMUSG00000059839	Zfp874b	9630025I21Rik|Rslcan16	zinc finger protein 874b	protein-coding
diff_RLAGL_Vector_cond1_4947	chr18	70266883	70267546	+	9.77329	NA	Intergenic	Intergenic	-22630	NM_029346	75577	Mm.58214	NM_029346	ENSMUSG00000024512	Dynap	2310002L13Rik	dynactin associated protein	protein-coding
diff_RLAGL_Vector_cond1_283	chr1	75506262	75506506	+	9.76705	NA	promoter-TSS (NM_178884)	promoter-TSS (NM_178884)	68	NM_178884	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding
diff_RLAGL_Vector_cond1_1578	chr11	30986322	30986696	+	9.76561	NA	promoter-TSS (NM_001290667)	promoter-TSS (NM_001290667)	-144	NM_001290667	68044	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding
diff_RLAGL_Vector_cond1_1931	chr11	110942693	110943199	+	9.76332	NA	Intergenic	Intergenic	-25087	NM_010604	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding
diff_RLAGL_Vector_cond1_1985	chr11	117934097	117934563	+	9.76139	NA	Intergenic	Intergenic	35036	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding
diff_RLAGL_Vector_cond1_4060	chr16	59403766	59403984	+	9.75813	NA	Intergenic	Intergenic	-3507	NM_001081190	328699	Mm.451970	NM_001081190	ENSMUSG00000074991	Gabrr3	-	gamma-aminobutyric acid (GABA) receptor, rho 3	protein-coding
diff_RLAGL_Vector_cond1_1673	chr11	58938812	58939038	+	9.75533	NA	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-19	NM_022423	108660	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding
diff_RLAGL_Vector_cond1_9152	chr7	101368023	101368238	+	9.75239	NA	intron (NM_001040111, intron 2 of 33)	intron (NM_001040111, intron 2 of 33)	-9992	NM_001040112	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
diff_RLAGL_Vector_cond1_6825	chr4	11848268	11848673	+	9.75226	NA	Intergenic	Intergenic	90313	NM_019753	12557	Mm.33402	NM_019753	ENSMUSG00000028217	Cdh17	HPT-1|HPT-1/LI	cadherin 17	protein-coding
diff_RLAGL_Vector_cond1_9580	chr8	63953506	63954062	+	9.74959	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-1614	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding
diff_RLAGL_Vector_cond1_8378	chr6	65157314	65157585	+	9.74896	NA	Intergenic	RMER1B|Other|Other	-12719	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding
diff_RLAGL_Vector_cond1_9027	chr7	66580787	66581128	+	9.74602	NA	Intergenic	Intergenic	108604	NM_080443	117589	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding
diff_RLAGL_Vector_cond1_9916	chr9	13681775	13681991	+	9.74394	NA	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	19423	NM_173776	270118	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7589	chr5	24475865	24476162	+	9.74383	NA	intron (NM_001256431, intron 1 of 8)	intron (NM_001256431, intron 1 of 8)	23836	NM_139153	213990	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding
diff_RLAGL_Vector_cond1_5295	chr2	14258395	14258670	+	9.74334	NA	intron (NM_008625, intron 5 of 29)	intron (NM_008625, intron 5 of 29)	-2471	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA
diff_RLAGL_Vector_cond1_3026	chr14	18754029	18754340	+	9.74066	NA	intron (NM_144839, intron 3 of 5)	intron (NM_144839, intron 3 of 5)	139443	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding
diff_RLAGL_Vector_cond1_787	chr1	189761527	189761799	+	9.73582	NA	intron (NM_008976, intron 1 of 18)	intron (NM_008976, intron 1 of 18)	33395	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding
diff_RLAGL_Vector_cond1_1266	chr10	95918769	95918993	+	9.73470	NA	Intergenic	Intergenic	-21782	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding
diff_RLAGL_Vector_cond1_5813	chr2	135659596	135659929	+	9.73284	NA	Intergenic	CpG	-76542	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA
diff_RLAGL_Vector_cond1_10413	chrX	21297362	21297666	+	9.73008	NA	Intergenic	Intergenic	37213	NR_033482	629024	Mm.391230	NR_033482	ENSMUSG00000087586	Gm6938	EG629024	predicted gene 6938	ncRNA
diff_RLAGL_Vector_cond1_5554	chr2	74257118	74257750	+	9.72881	NA	Intergenic	Intergenic	50283	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA
diff_RLAGL_Vector_cond1_6272	chr3	44819484	44819712	+	9.72781	NA	Intergenic	Lx8|LINE|L1	558662	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA
diff_RLAGL_Vector_cond1_10081	chr9	50856592	50856857	+	9.72592	NA	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	-200	NM_001286553	73699	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding
diff_RLAGL_Vector_cond1_9767	chr8	109360919	109361349	+	9.72411	NA	Intergenic	Intergenic	-20226	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo
diff_RLAGL_Vector_cond1_1514	chr11	16257437	16257993	+	9.72152	NA	promoter-TSS (NM_145967)	promoter-TSS (NM_145967)	-9	NM_001290539	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding
diff_RLAGL_Vector_cond1_1325	chr10	110455572	110456236	+	9.72128	NA	Intergenic	CpG	-144746	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
diff_RLAGL_Vector_cond1_2195	chr12	39913195	39913412	+	9.71826	NA	Intergenic	Intergenic	124073	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
diff_RLAGL_Vector_cond1_415	chr1	107915254	107915558	+	9.71646	NA	Intergenic	Intergenic	-1853	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA
diff_RLAGL_Vector_cond1_7333	chr4	133879018	133879509	+	9.71609	NA	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	-4532	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_4318	chr17	22866816	22867503	+	9.71378	NA	promoter-TSS (NM_177358)	promoter-TSS (NM_177358)	-25	NM_177358	240041	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding
diff_RLAGL_Vector_cond1_4033	chr16	54229408	54230155	+	9.71237	NA	Intergenic	RLTR22_Mus|LTR|ERVK	1053456	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4556	chr17	66881063	66881671	+	9.71131	NA	intron (NM_008984, intron 14 of 30)	intron (NM_008984, intron 14 of 30)	144868	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA
diff_RLAGL_Vector_cond1_2569	chr13	16633475	16633782	+	9.70557	NA	Intergenic	Intergenic	619153	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
diff_RLAGL_Vector_cond1_544	chr1	144003981	144004735	+	9.70135	NA	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-209	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding
diff_RLAGL_Vector_cond1_5326	chr2	20547407	20547697	+	9.70009	NA	intron (NM_178059, intron 3 of 18)	intron (NM_178059, intron 3 of 18)	28039	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
diff_RLAGL_Vector_cond1_769	chr1	186486275	186486579	+	9.70001	NA	Intergenic	Intergenic	72254	NR_131124	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA
diff_RLAGL_Vector_cond1_4187	chr16	89954201	89954812	+	9.69976	NA	intron (NM_001145886, intron 2 of 27)	intron (NM_001145886, intron 2 of 27)	6321	NM_009384	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding
diff_RLAGL_Vector_cond1_6456	chr3	92978324	92978808	+	9.69797	NA	Intergenic	(GGAA)n|Simple_repeat|Simple_repeat	11505	NM_001254725	69514	Mm.440092	NM_001254725	ENSMUSG00000074433	Lce3e	2310001H18Rik	late cornified envelope 3E	protein-coding
diff_RLAGL_Vector_cond1_2301	chr12	72287496	72287882	+	9.69618	NA	intron (NM_001286448, intron 1 of 6)	intron (NM_001286448, intron 1 of 6)	-50962	NM_001007596	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding
diff_RLAGL_Vector_cond1_7430	chr4	147782861	147783316	+	9.69535	NA	intron (NM_001127189, intron 3 of 5)	RLTR13A1|LTR|ERVK	26700	NM_001127189	100041677	Mm.327194	NM_001127189	ENSMUSG00000078495	Gm13157	OTTMUSG00000010679	predicted gene 13157	protein-coding
diff_RLAGL_Vector_cond1_6586	chr3	126878189	126878562	+	9.69455	NA	Intergenic	B2_Mm2|SINE|B2	65011	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	AI835472|AW491075|Ank-2	ankyrin 2, brain	protein-coding
diff_RLAGL_Vector_cond1_2372	chr12	95667377	95667609	+	9.69378	NA	Intergenic	MIRb|SINE|MIR	-24733	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
diff_RLAGL_Vector_cond1_2635	chr13	36578575	36578816	+	9.69271	NA	Intergenic	CpG	155782	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding
diff_RLAGL_Vector_cond1_7315	chr4	130952642	130952846	+	9.69126	NA	intron (NM_010769, intron 5 of 7)	intron (NM_010769, intron 5 of 7)	8359	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding
diff_RLAGL_Vector_cond1_4402	chr17	35666198	35666442	+	9.69050	NA	intron (NM_175137, intron 3 of 28)	intron (NM_175137, intron 3 of 28)	1272	NM_175137	68915	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
diff_RLAGL_Vector_cond1_1071	chr10	59221798	59222064	+	9.68779	NA	promoter-TSS (NM_001024911)	promoter-TSS (NM_001024911)	9	NM_172939	268301	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding
diff_RLAGL_Vector_cond1_10178	chr9	81633464	81633994	+	9.68665	NA	intron (NR_040396, intron 1 of 4)	intron (NR_040396, intron 1 of 4)	-1177	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding
diff_RLAGL_Vector_cond1_5320	chr2	19715707	19716077	+	9.68228	NA	Intergenic	Intergenic	57830	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1564	chr11	26802281	26802954	+	9.67642	NA	Intergenic	Intergenic	17509	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
diff_RLAGL_Vector_cond1_1650	chr11	53101827	53102047	+	9.67435	NA	intron (NM_177059, intron 6 of 15)	MTD|LTR|ERVL-MaLR	18119	NR_046047	790909	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	OTTMUSG00000000039	predicted gene 11186	ncRNA
diff_RLAGL_Vector_cond1_5573	chr2	78974680	78975082	+	9.67430	NA	Intergenic	RMER20B|LTR|ERVK	105834	NM_009454	22193	Mm.1485	NM_009454		Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding
diff_RLAGL_Vector_cond1_7709	chr5	49990695	49991067	+	9.67413	NA	intron (NM_133911, intron 10 of 18)	intron (NM_133911, intron 10 of 18)	68115	NM_133911	70693	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding
diff_RLAGL_Vector_cond1_3021	chr14	16648499	16648798	+	9.66802	NA	intron (NM_001289760, intron 2 of 9)	intron (NM_001289760, intron 2 of 9)	-73172	NM_011243	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding
diff_RLAGL_Vector_cond1_6965	chr4	49059385	49059623	+	9.66794	NA	promoter-TSS (NM_178756)	promoter-TSS (NM_178756)	42	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding
diff_RLAGL_Vector_cond1_1249	chr10	90839657	90840018	+	9.66138	NA	intron (NM_181398, intron 3 of 9)	intron (NM_181398, intron 3 of 9)	242906	NM_001282947	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding
diff_RLAGL_Vector_cond1_7898	chr5	108693970	108694280	+	9.65817	NA	promoter-TSS (NM_001164259)	promoter-TSS (NM_001164259)	-104	NM_001164259	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding
diff_RLAGL_Vector_cond1_5193	chr19	47865605	47865897	+	9.65586	NA	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-43	NM_026619	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding
diff_RLAGL_Vector_cond1_7528	chr5	8056451	8056719	+	9.65518	NA	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	43	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding
diff_RLAGL_Vector_cond1_8474	chr6	90988685	90989279	+	9.65515	NA	Intergenic	Intergenic	127844	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding
diff_RLAGL_Vector_cond1_2350	chr12	86894387	86894821	+	9.65509	NA	Intergenic	Intergenic	-9790	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding
diff_RLAGL_Vector_cond1_939	chr10	26772275	26772498	+	9.65386	NA	promoter-TSS (NM_176837)	promoter-TSS (NM_176837)	-126	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
diff_RLAGL_Vector_cond1_2979	chr13	119690009	119690449	+	9.65380	NA	promoter-TSS (NM_001291439)	promoter-TSS (NM_001291439)	-122	NM_145942	208715	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding
diff_RLAGL_Vector_cond1_7612	chr5	31811101	31811455	+	9.65058	NA	intron (NM_181279, intron 6 of 13)	intron (NM_181279, intron 6 of 13)	113228	NM_181279	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding
diff_RLAGL_Vector_cond1_2229	chr12	50999687	51000061	+	9.64879	NA	Intergenic	Intergenic	-5282	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
diff_RLAGL_Vector_cond1_2242	chr12	54203704	54204039	+	9.64860	NA	promoter-TSS (NM_028133)	promoter-TSS (NM_028133)	3	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding
diff_RLAGL_Vector_cond1_5323	chr2	20519170	20519422	+	9.64251	NA	promoter-TSS (NM_001177631)	promoter-TSS (NM_001177631)	-217	NM_001177630	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
diff_RLAGL_Vector_cond1_1043	chr10	52865124	52865400	+	9.64192	NA	intron (NM_178675, intron 1 of 7)	intron (NM_178675, intron 1 of 7)	174761	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
diff_RLAGL_Vector_cond1_4568	chr17	69563205	69563457	+	9.64079	NA	Intergenic	Intergenic	124005	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
diff_RLAGL_Vector_cond1_9564	chr8	58912646	58912961	+	9.63997	NA	intron (NM_173411, intron 2 of 2)	CpG	1048	NM_173411	234290	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding
diff_RLAGL_Vector_cond1_5171	chr19	44284115	44284513	+	9.63733	NA	Intergenic	CpG	-9362	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding
diff_RLAGL_Vector_cond1_8263	chr6	35864259	35864529	+	9.63408	NA	Intergenic	Intergenic	-324506	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding
diff_RLAGL_Vector_cond1_605	chr1	159911102	159911315	+	9.63282	NA	intron (NM_022312, intron 18 of 22)	intron (NM_022312, intron 18 of 22)	-133172	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding
diff_RLAGL_Vector_cond1_7649	chr5	37650965	37651273	+	9.62492	NA	intron (NM_022416, intron 1 of 11)	intron (NM_022416, intron 1 of 11)	66034	NM_022416	64293	Mm.103714	NM_022416	ENSMUSG00000029123	Stk32b	2510009F08Rik|STKG6|Stk32|YANK2	serine/threonine kinase 32B	protein-coding
diff_RLAGL_Vector_cond1_3120	chr14	49283952	49284412	+	9.62266	NA	Intergenic	Intergenic	-38754	NM_025956	67082	Mm.87439	NM_025956	ENSMUSG00000021850	1700011H14Rik	-	RIKEN cDNA 1700011H14 gene	protein-coding
diff_RLAGL_Vector_cond1_2134	chr12	26124287	26124609	+	9.62110	NA	intron (NR_131149, intron 3 of 4)	intron (NR_131149, intron 3 of 4)	86057	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
diff_RLAGL_Vector_cond1_3765	chr15	91572620	91573428	+	9.61720	NA	exon (NM_001033633, exon 1 of 10)	exon (NM_001033633, exon 1 of 10)	237	NM_001033633	239606	Mm.360596	NM_001033633	ENSMUSG00000036298	Slc2a13	6530403A04|A630029G22Rik|AI505012|Gm308	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding
diff_RLAGL_Vector_cond1_3683	chr15	73264019	73264245	+	9.61709	NA	intron (NM_007982, intron 19 of 31)	intron (NM_007982, intron 19 of 31)	-9250	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA
diff_RLAGL_Vector_cond1_692	chr1	174303224	174303522	+	9.61428	NA	Intergenic	Intergenic	-27145	NM_025470	66289	Mm.7150	NM_025470	ENSMUSG00000026531	Mptx1	1810030J14Rik|AV054416|Mptx	mucosal pentraxin 1	protein-coding
diff_RLAGL_Vector_cond1_4182	chr16	88776211	88776448	+	9.61030	NA	Intergenic	Intergenic	-2123	NM_027170	69696	Mm.358728	NM_027170	ENSMUSG00000048830	2310057N15Rik	Krtap13-1	RIKEN cDNA 2310057N15 gene	protein-coding
diff_RLAGL_Vector_cond1_10464	chrX	76035484	76035703	+	9.60905	NA	Intergenic	Intergenic	-160423	NM_001166453	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding
diff_RLAGL_Vector_cond1_1305	chr10	106603338	106603835	+	9.60880	NA	intron (NM_001205341, intron 3 of 31)	ORR1A3-int|LTR|ERVL-MaLR	-1106	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA
diff_RLAGL_Vector_cond1_10546	chrX	133981642	133981934	+	9.60868	NA	promoter-TSS (NM_001290719)	promoter-TSS (NM_001290719)	24	NM_001290717	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding
diff_RLAGL_Vector_cond1_4692	chr17	91147106	91147448	+	9.60674	NA	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-54475	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
diff_RLAGL_Vector_cond1_10557	chrX	138914135	138914517	+	9.60649	NA	promoter-TSS (NM_013724)	promoter-TSS (NM_013724)	-104	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding
diff_RLAGL_Vector_cond1_1491	chr11	9533809	9534085	+	9.60597	NA	intron (NM_178259, intron 46 of 61)	intron (NM_178259, intron 46 of 61)	342005	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
diff_RLAGL_Vector_cond1_7818	chr5	86976550	86976783	+	9.60577	NA	Intergenic	Intergenic	-24194	NM_172881	243085	Mm.312095	NM_172881	ENSMUSG00000035811	Ugt2b35	C730031G17	UDP glucuronosyltransferase 2 family, polypeptide B35	protein-coding
diff_RLAGL_Vector_cond1_1488	chr11	8584356	8584731	+	9.60548	NA	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	79992	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding
diff_RLAGL_Vector_cond1_10332	chr9	117571207	117571707	+	9.60359	NA	intron (NM_001172121, intron 1 of 14)	intron (NM_001172121, intron 1 of 14)	58456	NM_001172121	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
diff_RLAGL_Vector_cond1_9869	chr8	128617495	128617826	+	9.60257	NA	Intergenic	RMER10B|LTR|ERVL	-67994	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding
diff_RLAGL_Vector_cond1_1481	chr11	7765213	7765549	+	9.59959	NA	Intergenic	Intergenic	-551458	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_644	chr1	166295857	166296059	+	9.59790	NA	intron (NM_001164528, intron 6 of 9)	intron (NM_001164528, intron 6 of 9)	41819	NM_001164528	100039795	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|ENSMUSG00000040612|Ll	immunoglobulin-like domain containing receptor 2	protein-coding
diff_RLAGL_Vector_cond1_8163	chr6	8752997	8753243	+	9.59531	NA	intron (NM_001252266, intron 2 of 11)	intron (NM_001252266, intron 2 of 11)	5338	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding
diff_RLAGL_Vector_cond1_5852	chr2	140581980	140582310	+	9.59444	NA	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	89331	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_1246	chr10	90090943	90091274	+	9.59435	NA	intron (NM_001128086, intron 8 of 24)	MTE2b|LTR|ERVL-MaLR	217599	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_10260	chr9	103507031	103507676	+	9.59290	NA	intron (NM_178638, intron 3 of 5)	intron (NM_178638, intron 3 of 5)	-27025	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding
diff_RLAGL_Vector_cond1_6665	chr3	143273242	143273499	+	9.59117	NA	Intergenic	Intergenic	30315	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA
diff_RLAGL_Vector_cond1_1951	chr11	114472005	114472239	+	9.59113	NA	intron (NR_037269, intron 2 of 4)	MTD|LTR|ERVL-MaLR	-23262	NR_027643	319819	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA
diff_RLAGL_Vector_cond1_3049	chr14	24606823	24607148	+	9.59111	NA	Intergenic	Intergenic	116304	NM_207634	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding
diff_RLAGL_Vector_cond1_2934	chr13	112326329	112326672	+	9.58977	NA	intron (NM_001168403, intron 4 of 11)	intron (NM_001168403, intron 4 of 11)	37982	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding
diff_RLAGL_Vector_cond1_1470	chr11	7213341	7213809	+	9.58951	NA	exon (NM_008343, exon 1 of 5)	exon (NM_008343, exon 1 of 5)	348	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_5909	chr2	148580642	148580853	+	9.58843	NA	Intergenic	Intergenic	-91868	NM_019761	56488	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding
diff_RLAGL_Vector_cond1_3501	chr15	27681328	27681669	+	9.58597	NA	promoter-TSS (NM_198301)	promoter-TSS (NM_198301)	44	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding
diff_RLAGL_Vector_cond1_6163	chr3	10041020	10041236	+	9.58495	NA	Intergenic	Intergenic	28543	NM_001272098	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding
diff_RLAGL_Vector_cond1_1356	chr10	116253848	116254284	+	9.58272	NA	intron (NM_001161837, intron 11 of 12)	intron (NM_001161837, intron 11 of 12)	-47308	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding
diff_RLAGL_Vector_cond1_9584	chr8	64844086	64844385	+	9.58125	NA	intron (NM_178633, intron 1 of 14)	intron (NM_178633, intron 1 of 14)	5689	NM_178633	77113	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding
diff_RLAGL_Vector_cond1_7445	chr4	148858109	148858436	+	9.58097	NA	intron (NM_001159344, intron 2 of 20)	intron (NM_001159344, intron 2 of 20)	53880	NM_001159344	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding
diff_RLAGL_Vector_cond1_1160	chr10	80147921	80148251	+	9.58093	NA	promoter-TSS (NM_001305798)	promoter-TSS (NM_001305798)	-186	NM_021565	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding
diff_RLAGL_Vector_cond1_7940	chr5	114560620	114561337	+	9.57728	NA	Intergenic	Intergenic	-7273	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding
diff_RLAGL_Vector_cond1_10061	chr9	46469292	46469808	+	9.57717	NA	Intergenic	L3|LINE|CR1	-149564	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding
diff_RLAGL_Vector_cond1_4584	chr17	72399734	72399987	+	9.57698	NA	intron (NM_007439, intron 1 of 28)	intron (NM_007439, intron 1 of 28)	204447	NM_007439	11682	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding
diff_RLAGL_Vector_cond1_966	chr10	31517309	31517527	+	9.57678	NA	exon (NM_001146349, exon 3 of 6)	exon (NM_001146349, exon 3 of 6)	-71497	NM_009413	21987	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding
diff_RLAGL_Vector_cond1_4035	chr16	55527742	55528001	+	9.57609	NA	Intergenic	Intergenic	33140	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA
diff_RLAGL_Vector_cond1_9873	chr8	129263230	129263904	+	9.57491	NA	Intergenic	Intergenic	-29521	NM_153780	72139	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding
diff_RLAGL_Vector_cond1_2604	chr13	27996623	27996937	+	9.57309	NA	Intergenic	MTD|LTR|ERVL-MaLR	-19443	NM_011165	19110	Mm.18607	NM_011165	ENSMUSG00000005891	Prl4a1	AA409771|Ghd23|PLP-A|Prlpa	prolactin family 4, subfamily a, member 1	protein-coding
diff_RLAGL_Vector_cond1_821	chr1	193504015	193504225	+	9.57293	NA	Intergenic	Intergenic	3410	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA
diff_RLAGL_Vector_cond1_10380	chr9	123717419	123717976	+	9.56549	NA	promoter-TSS (NM_033322)	promoter-TSS (NM_033322)	-140	NM_033322	93730	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding
diff_RLAGL_Vector_cond1_4460	chr17	48002047	48002415	+	9.56493	NA	Intergenic	Intergenic	36062	NM_029689	76651	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding
diff_RLAGL_Vector_cond1_3390	chr14	122081399	122081650	+	9.56188	NA	Intergenic	Intergenic	25450	NR_015586	319727	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA
diff_RLAGL_Vector_cond1_7946	chr5	115436480	115436681	+	9.55951	NA	intron (NM_008629, intron 6 of 14)	CpG	6895	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_5222	chr19	58094962	58095433	+	9.55920	NA	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	44030	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA
diff_RLAGL_Vector_cond1_3527	chr15	35765348	35765817	+	9.55886	NA	intron (NM_177151, intron 35 of 61)	MLTR11B|LTR|ERVK	-104535	NR_030606	100124469		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA
diff_RLAGL_Vector_cond1_6766	chr3	157583009	157583476	+	9.55849	NA	intron (NM_011196, intron 1 of 2)	B4A|SINE|B4	16350	NM_011196	19218	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding
diff_RLAGL_Vector_cond1_10263	chr9	103983549	103983763	+	9.55781	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-18888	NM_028721	74025	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding
diff_RLAGL_Vector_cond1_9956	chr9	21545770	21545972	+	9.55699	NA	TTS (NM_001198794)	TTS (NM_001198794)	-1023	NM_153141	59035	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_3057	chr14	27785640	27785878	+	9.55590	NA	intron (NM_177814, intron 3 of 15)	intron (NM_177814, intron 3 of 15)	163317	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding
diff_RLAGL_Vector_cond1_450	chr1	120120766	120121368	+	9.55228	NA	promoter-TSS (NM_007830)	promoter-TSS (NM_007830)	29	NM_007830	13167	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding
diff_RLAGL_Vector_cond1_4387	chr17	34135316	34135795	+	9.54836	NA	5' UTR (NM_010386, exon 2 of 6)	5' UTR (NM_010386, exon 2 of 6)	-9861	NM_010388	15000	Mm.195060	NM_010388		H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding
diff_RLAGL_Vector_cond1_373	chr1	95313439	95313842	+	9.54595	NA	promoter-TSS (NM_026321)	promoter-TSS (NM_026321)	12	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding
diff_RLAGL_Vector_cond1_1480	chr11	7764497	7765077	+	9.54549	NA	Intergenic	Intergenic	-550864	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_9785	chr8	113551496	113552093	+	9.54375	NA	TTS (NR_110476)	TTS (NR_110476)	34512	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA
diff_RLAGL_Vector_cond1_7877	chr5	103264961	103265233	+	9.54272	NA	intron (NR_040699, intron 4 of 6)	intron (NR_040699, intron 4 of 6)	33932	NR_040699	74624	Mm.389662	NR_040699	ENSMUSG00000104956	4930429D17Rik	-	RIKEN cDNA 4930429D17 gene	ncRNA
diff_RLAGL_Vector_cond1_6267	chr3	41132857	41133564	+	9.53585	NA	Intergenic	Intergenic	-50164	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding
diff_RLAGL_Vector_cond1_1758	chr11	76010917	76011341	+	9.53551	NA	Intergenic	Intergenic	11217	NM_198637	74230	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding
diff_RLAGL_Vector_cond1_9293	chr7	138348207	138348527	+	9.53127	NA	intron (NM_183289, intron 4 of 11)	(CCCTG)n|Simple_repeat|Simple_repeat	49363	NM_183289	70571	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding
diff_RLAGL_Vector_cond1_4290	chr17	17656889	17657091	+	9.52750	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-32501	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding
diff_RLAGL_Vector_cond1_324	chr1	86487261	86487474	+	9.52425	NA	Intergenic	CpG	-39369	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding
diff_RLAGL_Vector_cond1_3544	chr15	41784244	41784498	+	9.52373	NA	intron (NM_001130166, intron 3 of 16)	intron (NM_001130166, intron 3 of 16)	-4663	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
diff_RLAGL_Vector_cond1_790	chr1	189927738	189927952	+	9.52373	NA	Intergenic	Intergenic	-5557	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_9811	chr8	117899962	117900389	+	9.52315	NA	Intergenic	Intergenic	-98246	NM_026758	68533	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding
diff_RLAGL_Vector_cond1_6706	chr3	148085839	148086411	+	9.51876	NA	Intergenic	Intergenic	868510	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_10256	chr9	101437728	101437931	+	9.51865	NA	Intergenic	Intergenic	95635	NR_110509	102633035	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA
diff_RLAGL_Vector_cond1_6135	chr3	3613667	3613912	+	9.51781	NA	intron (NM_013920, intron 1 of 9)	intron (NM_013920, intron 1 of 9)	105759	NM_013920	30942	Mm.330897	NM_013920		Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding
diff_RLAGL_Vector_cond1_6768	chr3	157924948	157925323	+	9.51704	NA	promoter-TSS (NM_145953)	promoter-TSS (NM_145953)	-72	NM_145953	107869	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding
diff_RLAGL_Vector_cond1_566	chr1	150392695	150393683	+	9.51556	NA	promoter-TSS (NM_001077237)	promoter-TSS (NM_001077237)	-134	NM_001077237	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding
diff_RLAGL_Vector_cond1_3849	chr16	5351985	5352664	+	9.51482	NA	Intergenic	Intergenic	-96368	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
diff_RLAGL_Vector_cond1_7417	chr4	144749104	144749488	+	9.51442	NA	Intergenic	RMER15-int|LTR|ERVL	-27892	NM_001085536	546849	Mm.457885	NM_001085536	ENSMUSG00000041735	Gm13178	Gm437|OTTMUSG00000010750	predicted gene 13178	protein-coding
diff_RLAGL_Vector_cond1_4604	chr17	75551716	75552344	+	9.51171	NA	promoter-TSS (NM_133747)	promoter-TSS (NM_133747)	-84	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding
diff_RLAGL_Vector_cond1_8284	chr6	41641581	41641806	+	9.51150	NA	Intergenic	Intergenic	-5288	NM_022413	64177	Mm.296889	NM_022413	ENSMUSG00000029868	Trpv6	CAT|CaT1|Cac|Ecac2|Otrpc3	transient receptor potential cation channel, subfamily V, member 6	protein-coding
diff_RLAGL_Vector_cond1_3814	chr15	100551911	100552193	+	9.50894	NA	promoter-TSS (NM_001289603)	promoter-TSS (NM_001289603)	-44	NM_001289603	21422	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding
diff_RLAGL_Vector_cond1_8821	chr7	12949400	12949791	+	9.50834	NA	Intergenic	Intergenic	-16269	NM_178732	243834	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding
diff_RLAGL_Vector_cond1_5028	chr18	86695318	86695744	+	9.50829	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-15579	NM_001302356	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding
diff_RLAGL_Vector_cond1_7563	chr5	18489698	18490091	+	9.50670	NA	Intergenic	Intergenic	-129481	NM_010305	14677	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding
diff_RLAGL_Vector_cond1_8161	chr6	8506696	8506940	+	9.50530	NA	TTS (NR_040452)	TTS (NR_040452)	2343	NR_040452	320312	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA
diff_RLAGL_Vector_cond1_879	chr10	10558151	10558573	+	9.50254	NA	promoter-TSS (NM_026405)	promoter-TSS (NM_026405)	-155	NM_026405	67844	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_6298	chr3	53863509	53863895	+	9.50184	NA	intron (NM_026435, intron 1 of 5)	CpG	105	NM_026435	67890	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|ENSMUSG00000074598|Gm10726	ubiquitin-fold modifier 1	protein-coding
diff_RLAGL_Vector_cond1_1603	chr11	35964215	35964602	+	9.50045	NA	intron (NM_170779, intron 1 of 22)	intron (NM_170779, intron 1 of 22)	15681	NM_170779	211652	Mm.31267	NM_170779		Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7500	chr4	156077027	156077324	+	9.50001	NA	Intergenic	Intergenic	-17373	NR_132444	100415901	Mm.437006	NR_132444		Gm13648	OTTMUSG00000013217	predicted gene 13648	ncRNA
diff_RLAGL_Vector_cond1_2255	chr12	56695416	56695704	+	9.49941	NA	promoter-TSS (NM_011041)	promoter-TSS (NM_011041)	89	NM_011041	18511	Mm.5035	NM_011041	ENSMUSG00000001497	Pax9	Pax-9	paired box 9	protein-coding
diff_RLAGL_Vector_cond1_3290	chr14	100352889	100353475	+	9.49785	NA	Intergenic	Intergenic	-203386	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
diff_RLAGL_Vector_cond1_10603	chrX	162025315	162025540	+	9.49748	NA	intron (NM_001290526, intron 1 of 8)	intron (NM_001290526, intron 1 of 8)	134014	NM_001081052	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding
diff_RLAGL_Vector_cond1_6924	chr4	35575421	35576239	+	9.49659	NA	Intergenic	Intergenic	269374	NM_175516	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_3949	chr16	36874937	36875238	+	9.49484	NA	promoter-TSS (NM_134111)	promoter-TSS (NM_134111)	-261	NM_134111	106389	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding
diff_RLAGL_Vector_cond1_9198	chr7	113513265	113513475	+	9.49133	NA	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-464	NM_001285831	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding
diff_RLAGL_Vector_cond1_702	chr1	176274796	176275763	+	9.48823	NA	promoter-TSS (NM_176916)	promoter-TSS (NM_176916)	33	NM_176916	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding
diff_RLAGL_Vector_cond1_446	chr1	119837394	119837779	+	9.48382	NA	promoter-TSS (NM_019933)	promoter-TSS (NM_019933)	-515	NM_019933	19258	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding
diff_RLAGL_Vector_cond1_6927	chr4	36038789	36039195	+	9.48292	NA	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-193788	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_8535	chr6	108064881	108065321	+	9.47937	NA	promoter-TSS (NM_001276356)	promoter-TSS (NM_001276356)	56	NM_178391	74729	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding
diff_RLAGL_Vector_cond1_9893	chr9	6337896	6338155	+	9.47737	NA	intron (NM_027924, intron 5 of 6)	RLTR9D|LTR|ERVK	-71478	NM_027942	71829	Mm.141452	NM_027942	ENSMUSG00000047619	Ddi1	1700011N24Rik	DDI1, DNA-damage inducible 1, homolog 1 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_6837	chr4	13461973	13462246	+	9.47527	NA	Intergenic	Intergenic	-281193	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
diff_RLAGL_Vector_cond1_8067	chr5	139493769	139494257	+	9.47381	NA	Intergenic	Intergenic	-9522	NM_001159908	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding
diff_RLAGL_Vector_cond1_522	chr1	137991504	137991710	+	9.47162	NA	Intergenic	Intergenic	24968	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA
diff_RLAGL_Vector_cond1_2220	chr12	50066478	50066694	+	9.46864	NA	Intergenic	Intergenic	582637	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
diff_RLAGL_Vector_cond1_4139	chr16	79342533	79342836	+	9.46788	NA	Intergenic	Intergenic	-251587	NM_178855	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
diff_RLAGL_Vector_cond1_8666	chr6	133341630	133342085	+	9.46526	NA	Intergenic	RLTR1F_Mm|LTR|ERVK	49641	NM_027784	232426	Mm.158689	NM_027784	ENSMUSG00000055594	5530400C23Rik	GRP	RIKEN cDNA 5530400C23 gene	protein-coding
diff_RLAGL_Vector_cond1_4844	chr18	42223958	42224214	+	9.46492	NA	intron (NM_134137, intron 22 of 31)	RMER15-int|LTR|ERVL	-27377	NM_027072	69401	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding
diff_RLAGL_Vector_cond1_7436	chr4	148041035	148041239	+	9.46122	NA	promoter-TSS (NR_027809)	promoter-TSS (NR_027809)	-52	NR_027809	17769	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	5,10-methylenetetrahydrofolate reductase	protein-coding
diff_RLAGL_Vector_cond1_9456	chr8	34675290	34675495	+	9.45813	NA	Intergenic	Intergenic	-35076	NR_040706	330734	Mm.149998	NR_040706		B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA
diff_RLAGL_Vector_cond1_9305	chr7	139992468	139992675	+	9.45556	NA	promoter-TSS (NM_001291066)	promoter-TSS (NM_001291066)	-9	NM_001291066	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding
diff_RLAGL_Vector_cond1_8841	chr7	16882934	16883231	+	9.44942	NA	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	7765	NM_001081655	629378	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dapper homolog 3, antagonist of beta-catenin (xenopus)	protein-coding
diff_RLAGL_Vector_cond1_2997	chr14	10483257	10483504	+	9.44848	NA	intron (NM_001308285, intron 4 of 9)	intron (NM_001308285, intron 4 of 9)	-29922	NM_001308286	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding
diff_RLAGL_Vector_cond1_7250	chr4	118516752	118517125	+	9.44841	NA	Intergenic	Intergenic	-10337	NM_025572	66451	Mm.34431	NM_025572	ENSMUSG00000028536	2610528J11Rik	TEMP	RIKEN cDNA 2610528J11 gene	protein-coding
diff_RLAGL_Vector_cond1_698	chr1	175880429	175880982	+	9.44756	NA	promoter-TSS (NM_012012)	promoter-TSS (NM_012012)	-73	NM_012012	26909	Mm.283046	NM_012012		Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding
diff_RLAGL_Vector_cond1_4012	chr16	50201545	50201773	+	9.44346	NA	intron (NM_027444, intron 15 of 16)	intron (NM_027444, intron 15 of 16)	-128807	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA
diff_RLAGL_Vector_cond1_3854	chr16	9672478	9672734	+	9.44346	NA	intron (NM_008170, intron 3 of 11)	intron (NM_008170, intron 3 of 11)	319927	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding
diff_RLAGL_Vector_cond1_2828	chr13	77135365	77135849	+	9.44156	NA	promoter-TSS (NM_134071)	promoter-TSS (NM_134071)	71	NM_001145676	72371	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding
diff_RLAGL_Vector_cond1_7629	chr5	33816508	33816827	+	9.43983	NA	Intergenic	Intergenic	-26445	NM_001081102	107823	Mm.19892	NM_175231	ENSMUSG00000057406	Whsc1	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|NSD2|Whsc1l|mKIAA1090	Wolf-Hirschhorn syndrome candidate 1 (human)	protein-coding
diff_RLAGL_Vector_cond1_8002	chr5	131821447	131821646	+	9.43269	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	-58723	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
diff_RLAGL_Vector_cond1_7257	chr4	120287753	120288163	+	9.43075	NA	promoter-TSS (NM_194060)	promoter-TSS (NM_194060)	-697	NM_194060	329934	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding
diff_RLAGL_Vector_cond1_1953	chr11	114867615	114867847	+	9.43048	NA	intron (NM_147217, intron 3 of 3)	intron (NM_147217, intron 3 of 3)	15701	NM_147217	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding
diff_RLAGL_Vector_cond1_2334	chr12	84114242	84114456	+	9.42634	NA	promoter-TSS (NM_028821)	promoter-TSS (NM_028821)	21	NM_028821	105000	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding
diff_RLAGL_Vector_cond1_4185	chr16	89586166	89586541	+	9.42548	NA	Intergenic	RMER17B|LTR|ERVK	-15170	NM_001113406	16693	Mm.310906	NM_001113406	ENSMUSG00000091212	Krtap11-1	AA162070|AA589467|AV018433|Hacl1|KAP11.1|PRED29	keratin associated protein 11-1	protein-coding
diff_RLAGL_Vector_cond1_4164	chr16	87741062	87741373	+	9.42187	NA	Intergenic	Intergenic	42263	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1	protein-coding
diff_RLAGL_Vector_cond1_6219	chr3	24747203	24747537	+	9.42104	NA	Intergenic	Intergenic	1405937	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
diff_RLAGL_Vector_cond1_7437	chr4	148114816	148115064	+	9.41995	NA	intron (NM_027426, intron 2 of 6)	intron (NM_027426, intron 2 of 6)	15758	NM_027426	70433	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding
diff_RLAGL_Vector_cond1_7387	chr4	140837899	140838276	+	9.41914	NA	intron (NM_011059, intron 1 of 15)	intron (NM_011059, intron 1 of 15)	7691	NM_011059	18599	Mm.20854	NM_011059	ENSMUSG00000025329	Padi1	AV236283|Pdi1	peptidyl arginine deiminase, type I	protein-coding
diff_RLAGL_Vector_cond1_9892	chr9	6168408	6168809	+	9.41764	NA	promoter-TSS (NM_027924)	promoter-TSS (NM_027924)	-4	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding
diff_RLAGL_Vector_cond1_2724	chr13	60957075	60957395	+	9.41755	NA	Intergenic	Intergenic	-15300	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding
diff_RLAGL_Vector_cond1_6203	chr3	21226580	21226788	+	9.41501	NA	Intergenic	Intergenic	-849968	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_755	chr1	184140545	184140961	+	9.41117	NA	Intergenic	Intergenic	106292	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
diff_RLAGL_Vector_cond1_783	chr1	188795724	188796020	+	9.40780	NA	intron (NM_021408, intron 48 of 70)	ORR1B1|LTR|ERVL-MaLR	211968	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_6144	chr3	7503124	7503743	+	9.40733	NA	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	7	NM_173181	67306	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding
diff_RLAGL_Vector_cond1_7786	chr5	74194283	74194490	+	9.40113	NA	promoter-TSS (NM_026878)	promoter-TSS (NM_026878)	-940	NM_026878	68939	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding
diff_RLAGL_Vector_cond1_3842	chr15	103514208	103514429	+	9.39756	NA	promoter-TSS (NM_001285890)	promoter-TSS (NM_001285890)	-659	NM_001285890	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding
diff_RLAGL_Vector_cond1_88	chr1	23189884	23190111	+	9.39383	NA	Intergenic	Intergenic	-82272	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA
diff_RLAGL_Vector_cond1_10612	chrX	164980069	164980728	+	9.39272	NA	promoter-TSS (NM_029730)	promoter-TSS (NM_029730)	-23	NM_029730	76763	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_9498	chr8	44024992	44025207	+	9.39180	NA	Intergenic	Intergenic	-325608	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding
diff_RLAGL_Vector_cond1_7198	chr4	109430833	109431281	+	9.38802	NA	intron (NM_153392, intron 9 of 17)	intron (NM_153392, intron 9 of 17)	15410	NM_001145948	230603	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding
diff_RLAGL_Vector_cond1_5514	chr2	63090494	63090748	+	9.38704	NA	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	93666	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
diff_RLAGL_Vector_cond1_8907	chr7	34630261	34630939	+	9.38670	NA	Intergenic	Intergenic	22241	NM_146188	233107	Mm.486198	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding
diff_RLAGL_Vector_cond1_8790	chr7	3292795	3293135	+	9.38325	NA	promoter-TSS (NM_001093766)	promoter-TSS (NM_001093766)	-63	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding
diff_RLAGL_Vector_cond1_3535	chr15	39006135	39006336	+	9.38173	NA	promoter-TSS (NM_008056)	promoter-TSS (NM_008056)	-45	NM_001162494	14368	Mm.4769	NM_008056	ENSMUSG00000022297	Fzd6	Fz6	frizzled homolog 6 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5430	chr2	45522448	45522832	+	9.37927	NA	Intergenic	Intergenic	-173965	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
diff_RLAGL_Vector_cond1_4841	chr18	39759567	39760243	+	9.37852	NA	Intergenic	Intergenic	-13592	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding
diff_RLAGL_Vector_cond1_594	chr1	156303376	156303745	+	9.37826	NA	promoter-TSS (NM_001134741)	promoter-TSS (NM_001134741)	46	NM_001277730	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_7126	chr4	93334615	93334946	+	9.37669	NA	3' UTR (NM_026954, exon 1 of 1)	3' UTR (NM_026954, exon 1 of 1)	731	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding
diff_RLAGL_Vector_cond1_6753	chr3	154881507	154881763	+	9.37661	NA	intron (NM_177066, intron 17 of 24)	ORR1D2|LTR|ERVL-MaLR	170502	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
diff_RLAGL_Vector_cond1_6085	chr2	173976318	173976548	+	9.37445	NA	Intergenic	Intergenic	-100618	NM_001102424	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding
diff_RLAGL_Vector_cond1_1051	chr10	53629818	53630305	+	9.37381	NA	exon (NM_027830, exon 2 of 14)	exon (NM_027830, exon 2 of 14)	378	NM_027830	71567	Mm.278221	NM_027830		Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance complex component 9	protein-coding
diff_RLAGL_Vector_cond1_1834	chr11	94210866	94211328	+	9.37364	NA	promoter-TSS (NM_009427)	promoter-TSS (NM_009427)	-357	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding
diff_RLAGL_Vector_cond1_7153	chr4	99717919	99718237	+	9.37252	NA	intron (NM_001081264, intron 1 of 14)	intron (NM_001081264, intron 1 of 14)	2448	NM_001081264	320438	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding
diff_RLAGL_Vector_cond1_2662	chr13	46255725	46255945	+	9.37200	NA	Intergenic	RMER13A1|LTR|ERVK	-17886	NM_001005422	380842	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4192	chr16	91408033	91408323	+	9.36636	NA	intron (NM_008349, intron 2 of 6)	intron (NM_008349, intron 2 of 6)	1943	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding
diff_RLAGL_Vector_cond1_455	chr1	120655034	120655275	+	9.36612	NA	Intergenic	MER63B|DNA|hAT-Blackjack	52667	NM_010133	13798	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1	engrailed 1	protein-coding
diff_RLAGL_Vector_cond1_7220	chr4	114304700	114304983	+	9.36598	NA	Intergenic	Intergenic	-101883	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding
diff_RLAGL_Vector_cond1_4250	chr17	11092847	11093199	+	9.36306	NA	intron (NM_016694, intron 2 of 11)	intron (NM_016694, intron 2 of 11)	252639	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding
diff_RLAGL_Vector_cond1_7872	chr5	102845139	102845525	+	9.36265	NA	intron (NM_001286468, intron 2 of 7)	intron (NM_001286468, intron 2 of 7)	76522	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
diff_RLAGL_Vector_cond1_7817	chr5	86318474	86318692	+	9.36234	NA	intron (NM_145561, intron 7 of 9)	IAPLTR2_Mm|LTR|ERVK	-29275	NM_001030297	435845	Mm.359654	NM_001030297	ENSMUSG00000061184	Tmprss11c	Tmprss13	transmembrane protease, serine 11c	protein-coding
diff_RLAGL_Vector_cond1_7397	chr4	141312328	141312844	+	9.35789	NA	intron (NM_010139, intron 3 of 16)	intron (NM_010139, intron 3 of 16)	11365	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding
diff_RLAGL_Vector_cond1_8099	chr5	147564173	147564577	+	9.35732	NA	exon (NM_010228, exon 30 of 30)	exon (NM_010228, exon 30 of 30)	133795	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_9553	chr8	56406295	56406638	+	9.35604	NA	Intergenic	MTD|LTR|ERVL-MaLR	78502	NR_131020	75123	Mm.72666	NR_131020		4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA
diff_RLAGL_Vector_cond1_2734	chr13	62653157	62653555	+	9.34967	NA	Intergenic	Intergenic	-29174	NM_173381	211378	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding
diff_RLAGL_Vector_cond1_6867	chr4	21727460	21727970	+	9.34462	NA	promoter-TSS (NM_001290422)	promoter-TSS (NM_001290422)	14	NM_001290422	51813	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding
diff_RLAGL_Vector_cond1_2839	chr13	81710888	81711546	+	9.34227	NA	promoter-TSS (NM_001081176)	promoter-TSS (NM_001081176)	-200	NM_028372	72852	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_2328	chr12	80103662	80103956	+	9.34220	NA	Intergenic	Intergenic	9204	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding
diff_RLAGL_Vector_cond1_4592	chr17	74217361	74217593	+	9.33984	NA	intron (NM_133771, intron 6 of 8)	intron (NM_133771, intron 6 of 8)	77386	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding
diff_RLAGL_Vector_cond1_8767	chr6	145977868	145978352	+	9.33968	NA	Intergenic	Intergenic	43963	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding
diff_RLAGL_Vector_cond1_4128	chr16	77469920	77470200	+	9.33809	NA	intron (NR_015543, intron 3 of 4)	intron (NR_015543, intron 3 of 4)	-128876	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA
diff_RLAGL_Vector_cond1_6365	chr3	67429976	67430312	+	9.33784	NA	promoter-TSS (NM_138591)	promoter-TSS (NM_138591)	29	NM_138591	28030	Mm.122466	NM_138591		Gfm1	AW545374|D3Wsu133e|Gfm	G elongation factor, mitochondrial 1	protein-coding
diff_RLAGL_Vector_cond1_1263	chr10	95385815	95386121	+	9.33775	NA	Intergenic	Intergenic	29315	NM_001168657	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding
diff_RLAGL_Vector_cond1_5695	chr2	110189067	110189358	+	9.33698	NA	Intergenic	Intergenic	116513	NM_130452	170442	Mm.27335	NM_130452		Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding
diff_RLAGL_Vector_cond1_8615	chr6	124738537	124738941	+	9.33598	NA	promoter-TSS (NM_001077705)	promoter-TSS (NM_001077705)	-30	NM_001077705	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding
diff_RLAGL_Vector_cond1_9542	chr8	54121986	54122226	+	9.33120	NA	intron (NM_009506, intron 1 of 6)	intron (NM_009506, intron 1 of 6)	44574	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
diff_RLAGL_Vector_cond1_7805	chr5	81019486	81019695	+	9.32961	NA	Intergenic	CpG	-2003	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
diff_RLAGL_Vector_cond1_9370	chr8	10006228	10006495	+	9.32381	NA	promoter-TSS (NM_033622)	promoter-TSS (NM_033622)	-272	NM_033622	24099	Mm.28835	NM_033622		Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding
diff_RLAGL_Vector_cond1_6156	chr3	9249707	9250372	+	9.32068	NA	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-528	NM_177660	229055	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding
diff_RLAGL_Vector_cond1_4053	chr16	57685970	57686358	+	9.32026	NA	intron (NM_007739, intron 1 of 3)	intron (NM_007739, intron 1 of 3)	68573	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_7317	chr4	131838069	131838466	+	9.32018	NA	promoter-TSS (NM_011214)	promoter-TSS (NM_011214)	11	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding
diff_RLAGL_Vector_cond1_4730	chr18	7626619	7627263	+	9.32000	NA	promoter-TSS (NM_001081287)	promoter-TSS (NM_001081287)	-78	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding
diff_RLAGL_Vector_cond1_3735	chr15	84621775	84622012	+	9.31979	NA	Intergenic	Intergenic	-59105	NM_146061	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding
diff_RLAGL_Vector_cond1_4188	chr16	90143736	90144449	+	9.31833	NA	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	1855	NR_033476	100038709	Mm.484070	NR_033476		Gm10789	ENSMUSG00000074924	predicted gene 10789	ncRNA
diff_RLAGL_Vector_cond1_7580	chr5	23049219	23049536	+	9.31809	NA	intron (NM_001081231, intron 1 of 3)	intron (NM_001081231, intron 1 of 3)	-302493	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA
diff_RLAGL_Vector_cond1_932	chr10	25317716	25317996	+	9.31763	NA	Intergenic	RMER17C|LTR|ERVK	-18693	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding
diff_RLAGL_Vector_cond1_6819	chr4	10141344	10141891	+	9.31471	NA	Intergenic	Intergenic	-224220	NR_004448	74662	Mm.483401	NR_004448	ENSMUSG00000082843	4930448K20Rik	1700009K09Rik	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
diff_RLAGL_Vector_cond1_548	chr1	146322004	146322463	+	9.31383	NA	Intergenic	Lx6|LINE|L1	-173433	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_1826	chr11	91244832	91245399	+	9.31360	NA	Intergenic	Intergenic	332440	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding
diff_RLAGL_Vector_cond1_1449	chr10	130224975	130225303	+	9.31251	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-14011	NM_146300	258297	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding
diff_RLAGL_Vector_cond1_8185	chr6	14901263	14901570	+	9.31166	NA	promoter-TSS (NM_053242)	promoter-TSS (NM_053242)	67	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding
diff_RLAGL_Vector_cond1_7676	chr5	43500306	43500526	+	9.31079	NA	Intergenic	Intergenic	-15153	NM_001135172	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding
diff_RLAGL_Vector_cond1_8725	chr6	141271661	141271907	+	9.31039	NA	intron (NM_018779, intron 1 of 15)	intron (NM_018779, intron 1 of 15)	22515	NM_018779	54611	Mm.103728	NM_018779		Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding
diff_RLAGL_Vector_cond1_6895	chr4	26583292	26583845	+	9.30986	NA	Intergenic	MERV1_I-int|LTR|ERV1	121881	NR_040656	75360	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA
diff_RLAGL_Vector_cond1_3574	chr15	48235516	48235790	+	9.30539	NA	intron (NM_001081391, intron 10 of 70)	RLTR22_Mur|LTR|ERVK	556336	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
diff_RLAGL_Vector_cond1_429	chr1	114532625	114533216	+	9.30389	NA	Intergenic	Intergenic	-1152217	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
diff_RLAGL_Vector_cond1_5782	chr2	129592817	129593634	+	9.30334	NA	promoter-TSS (NM_007547)	promoter-TSS (NM_007547)	56	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding
diff_RLAGL_Vector_cond1_1050	chr10	53596743	53597165	+	9.30228	NA	promoter-TSS (NM_025541)	promoter-TSS (NM_025541)	-7	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding
diff_RLAGL_Vector_cond1_754	chr1	184138748	184138956	+	9.30225	NA	Intergenic	Intergenic	104391	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
diff_RLAGL_Vector_cond1_1228	chr10	88201039	88201641	+	9.29993	NA	intron (NM_027487, intron 1 of 5)	intron (NM_027487, intron 1 of 5)	243	NM_026070	67282	Mm.208465	NM_026070	ENSMUSG00000020056	Ccdc53	2900091E11Rik|5730495F03Rik	coiled-coil domain containing 53	protein-coding
diff_RLAGL_Vector_cond1_3316	chr14	103346511	103347156	+	9.29665	NA	promoter-TSS (NM_207215)	promoter-TSS (NM_207215)	-33	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_8148	chr6	6149913	6150204	+	9.29620	NA	intron (NM_001177572, intron 4 of 17)	intron (NM_001177572, intron 4 of 17)	67115	NM_015829	50799	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding
diff_RLAGL_Vector_cond1_2207	chr12	41852011	41852604	+	9.29558	NA	intron (NM_053122, intron 6 of 6)	RLTR40|LTR|ERVK	-366250	NM_001271709	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
diff_RLAGL_Vector_cond1_5918	chr2	148874997	148875710	+	9.29444	NA	exon (NM_009976, exon 1 of 3)	exon (NM_009976, exon 1 of 3)	159	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding
diff_RLAGL_Vector_cond1_8184	chr6	14044715	14044973	+	9.29213	NA	Intergenic	URR1A|DNA|hAT-Charlie	173275	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
diff_RLAGL_Vector_cond1_8336	chr6	55324282	55324495	+	9.29071	NA	Intergenic	Intergenic	-11911	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding
diff_RLAGL_Vector_cond1_2365	chr12	91384314	91384673	+	9.28811	NA	promoter-TSS (NM_181815)	promoter-TSS (NM_181815)	-84	NM_181815	75216	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding
diff_RLAGL_Vector_cond1_2048	chr12	7636689	7637068	+	9.28489	NA	Intergenic	Intergenic	-256548	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA
diff_RLAGL_Vector_cond1_4558	chr17	67354268	67355028	+	9.28293	NA	promoter-TSS (NM_008984)	promoter-TSS (NM_008984)	-189	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding
diff_RLAGL_Vector_cond1_8346	chr6	57326309	57326523	+	9.28253	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-2781	NM_134184	171202	Mm.431971	NM_134184	ENSMUSG00000093523	Vmn1r16	V1rc29	vomeronasal 1 receptor 16	protein-coding
diff_RLAGL_Vector_cond1_6056	chr2	170508908	170509107	+	9.27786	NA	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-2223	NM_001110152	109054	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding
diff_RLAGL_Vector_cond1_10169	chr9	78117749	78118014	+	9.27719	NA	intron (NM_019987, intron 1 of 13)	intron (NM_019987, intron 1 of 13)	4643	NM_019987	56542	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding
diff_RLAGL_Vector_cond1_9558	chr8	57511930	57512188	+	9.27714	NA	intron (NM_008252, intron 1 of 4)	CpG	216	NM_008252	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding
diff_RLAGL_Vector_cond1_7675	chr5	43445566	43445793	+	9.27686	NA	Intergenic	Intergenic	-69890	NM_001135172	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding
diff_RLAGL_Vector_cond1_9315	chr7	141338627	141339084	+	9.27676	NA	promoter-TSS (NM_133191)	promoter-TSS (NM_133191)	-72	NM_001282073	54006	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	deformed epidermal autoregulatory factor 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3062	chr14	28417073	28417295	+	9.27419	NA	intron (NM_177814, intron 15 of 15)	intron (NM_177814, intron 15 of 15)	-88289	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
diff_RLAGL_Vector_cond1_6894	chr4	26542571	26542789	+	9.27059	NA	Intergenic	Lx5c|LINE|L1	162769	NR_040656	75360	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA
diff_RLAGL_Vector_cond1_3962	chr16	39285396	39285637	+	9.26838	NA	Intergenic	MTD|LTR|ERVL-MaLR	383171	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
diff_RLAGL_Vector_cond1_3020	chr14	16575223	16575778	+	9.26680	NA	promoter-TSS (NM_011243)	promoter-TSS (NM_011243)	-24	NM_011243	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding
diff_RLAGL_Vector_cond1_78	chr1	21033400	21033916	+	9.26589	NA	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	45567	NM_177409	170829	Mm.185680	NM_177409		Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding
diff_RLAGL_Vector_cond1_6038	chr2	168955186	168955694	+	9.26502	NA	5' UTR (NM_009564, exon 1 of 6)	5' UTR (NM_009564, exon 1 of 6)	147	NM_009564	22722	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding
diff_RLAGL_Vector_cond1_3309	chr14	102884912	102885368	+	9.26441	NA	Intergenic	Intergenic	97492	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
diff_RLAGL_Vector_cond1_6040	chr2	169061481	169061859	+	9.26414	NA	Intergenic	Intergenic	83401	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA
diff_RLAGL_Vector_cond1_10259	chr9	103049001	103049290	+	9.26117	NA	intron (NM_033314, intron 2 of 13)	MTD|LTR|ERVL-MaLR	40656	NM_033314	24059	Mm.207106	NM_033314		Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding
diff_RLAGL_Vector_cond1_1401	chr10	124710968	124711341	+	9.26053	NA	Intergenic	Intergenic	242080	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo
diff_RLAGL_Vector_cond1_4020	chr16	51942563	51942970	+	9.25933	NA	Intergenic	Intergenic	-88783	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
diff_RLAGL_Vector_cond1_6928	chr4	36540736	36541267	+	9.25802	NA	intron (NM_001166000, intron 1 of 8)	intron (NM_001166000, intron 1 of 8)	104452	NR_030545	100124458		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA
diff_RLAGL_Vector_cond1_6802	chr4	5644032	5644333	+	9.25726	NA	promoter-TSS (NM_173426)	promoter-TSS (NM_173426)	3	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding
diff_RLAGL_Vector_cond1_5130	chr19	27904732	27904990	+	9.25555	NA	intron (NM_011265, intron 1 of 16)	intron (NM_011265, intron 1 of 16)	78087	NM_001166414	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding
diff_RLAGL_Vector_cond1_1579	chr11	31169363	31169778	+	9.24976	NA	Intergenic	Intergenic	-183205	NM_001290667	68044	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding
diff_RLAGL_Vector_cond1_2385	chr12	100187540	100187749	+	9.24969	NA	promoter-TSS (NR_045282)	promoter-TSS (NR_045282)	-324	NR_045282	100038378	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	ENSMUSG00000072884	predicted gene 10433	ncRNA
diff_RLAGL_Vector_cond1_8220	chr6	23939003	23939304	+	9.24924	NA	Intergenic	MTEa-int|LTR|ERVL-MaLR	30907	NM_207022	387347	Mm.377909	NM_207022	ENSMUSG00000043865	Tas2r118	Gm465|T2R18|Tas2r16|Tas2r18|mGR18|mt2r40	taste receptor, type 2, member 118	protein-coding
diff_RLAGL_Vector_cond1_8793	chr7	3665346	3665610	+	9.24778	NA	TTS (NM_181820)	TTS (NM_181820)	362	NM_027203	69757	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding
diff_RLAGL_Vector_cond1_5729	chr2	117941671	117942013	+	9.24511	NA	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	119914	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA
diff_RLAGL_Vector_cond1_8430	chr6	83443569	83443799	+	9.24440	NA	intron (NR_028382, intron 2 of 2)	intron (NR_028382, intron 2 of 2)	1929	NR_028382	320775	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA
diff_RLAGL_Vector_cond1_5224	chr19	58850760	58851056	+	9.24360	NA	intron (NM_175199, intron 1 of 11)	intron (NM_175199, intron 1 of 11)	10076	NM_175199	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|mKIAA0417	heat shock protein 12A	protein-coding
diff_RLAGL_Vector_cond1_2260	chr12	57891539	57891903	+	9.24115	NA	Intergenic	Intergenic	-228810	NR_131112	217601	Mm.488987	NR_131112		BC042761	-	cDNA sequence BC042761	ncRNA
diff_RLAGL_Vector_cond1_948	chr10	28074759	28074964	+	9.23241	NA	promoter-TSS (NM_008983)	promoter-TSS (NM_008983)	41	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding
diff_RLAGL_Vector_cond1_2340	chr12	84805268	84805520	+	9.23113	NA	intron (NM_013589, intron 15 of 34)	intron (NM_013589, intron 15 of 34)	32124	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10047	chr9	44305611	44305959	+	9.22972	NA	promoter-TSS (NM_172162)	promoter-TSS (NM_172162)	-114	NM_172162	102423	Mm.24570	NM_172162	ENSMUSG00000032119	Hinfp	AA589481|HiNF-P|Mizf	histone H4 transcription factor	protein-coding
diff_RLAGL_Vector_cond1_9018	chr7	65049260	65049537	+	9.22892	NA	intron (NM_183087, intron 1 of 9)	intron (NM_183087, intron 1 of 9)	107130	NM_183087	70638	Mm.441986	NM_183087	ENSMUSG00000030518	Fam189a1	5730507A09Rik|AW047451	family with sequence similarity 189, member A1	protein-coding
diff_RLAGL_Vector_cond1_6672	chr3	145083097	145083460	+	9.22802	NA	intron (NM_178697, intron 9 of 13)	intron (NM_178697, intron 9 of 13)	15763	NM_178697	229933	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding
diff_RLAGL_Vector_cond1_6869	chr4	22357281	22358239	+	9.22787	NA	intron (NR_104378, intron 1 of 8)	CpG	217	NR_104380	269514	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding
diff_RLAGL_Vector_cond1_6779	chr3	159621119	159621416	+	9.22749	NA	intron (NM_029987, intron 10 of 14)	intron (NM_029987, intron 10 of 14)	22086	NM_029987	19892	Mm.131708	NM_029987	ENSMUSG00000028174	Rpe65	65kDa|A930029L06Rik|LCA2|Mord1|RP20|rd12	retinal pigment epithelium 65	protein-coding
diff_RLAGL_Vector_cond1_10481	chrX	89822671	89822908	+	9.22668	NA	Intergenic	RLTR9C|LTR|ERVK	70521	NM_001085511	245509	Mm.297700	NM_001085511	ENSMUSG00000079513	4932429P05Rik	-	RIKEN cDNA 4932429P05 gene	protein-coding
diff_RLAGL_Vector_cond1_6067	chr2	172203203	172203482	+	9.22611	NA	Intergenic	MTD|LTR|ERVL-MaLR	-45150	NM_008561	17201	Mm.57183	NM_008561	ENSMUSG00000038537	Mc3r	MC3-R	melanocortin 3 receptor	protein-coding
diff_RLAGL_Vector_cond1_5092	chr19	14598008	14598272	+	9.22604	NA	promoter-TSS (NM_011600)	promoter-TSS (NM_011600)	43	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4, homolog of Drosophila E(spl)	protein-coding
diff_RLAGL_Vector_cond1_4857	chr18	44311365	44311585	+	9.22569	NA	Intergenic	Intergenic	-22599	NM_001033621	58916	Mm.143804	NM_001033621	ENSMUSG00000024471	Myot	5530402I04Rik|Ttid	myotilin	protein-coding
diff_RLAGL_Vector_cond1_8737	chr6	142759687	142760211	+	9.22462	NA	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	3263	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding
diff_RLAGL_Vector_cond1_2669	chr13	50417712	50417991	+	9.22443	NA	promoter-TSS (NM_175401)	promoter-TSS (NM_175401)	-26	NM_175401	109082	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding
diff_RLAGL_Vector_cond1_1621	chr11	43626374	43626629	+	9.22435	NA	Intergenic	Intergenic	-24939	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding
diff_RLAGL_Vector_cond1_1062	chr10	56770511	56770920	+	9.22256	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	393415	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_5267	chr2	9879553	9879752	+	9.21667	NA	Intergenic	Intergenic	-1052	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_8181	chr6	13838579	13838792	+	9.21660	NA	5' UTR (NM_145066, exon 2 of 4)	5' UTR (NM_145066, exon 2 of 4)	1163	NM_145066	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding
diff_RLAGL_Vector_cond1_9844	chr8	122983208	122983445	+	9.21554	NA	intron (NR_037865, intron 1 of 13)	intron (NR_037865, intron 1 of 13)	58958	NM_001081379	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding
diff_RLAGL_Vector_cond1_1785	chr11	82174852	82175070	+	9.20817	NA	Intergenic	Intergenic	4851	NM_011329	20290	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|Scya1|Tca-3	chemokine (C-C motif) ligand 1	protein-coding
diff_RLAGL_Vector_cond1_8665	chr6	133105602	133105855	+	9.20587	NA	3' UTR (NM_001163445, exon 1 of 1)	3' UTR (NM_001163445, exon 1 of 1)	489	NM_001271583	381820	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding
diff_RLAGL_Vector_cond1_6478	chr3	98413395	98413622	+	9.20370	NA	intron (NM_172863, intron 1 of 2)	Lx8|LINE|L1	31027	NM_172863	242109	Mm.358911	NM_172863	ENSMUSG00000050064	Zfp697	9430053K19|AI467503|Znf697	zinc finger protein 697	protein-coding
diff_RLAGL_Vector_cond1_8750	chr6	144088248	144088533	+	9.20306	NA	intron (NM_001113559, intron 3 of 13)	ID_B1|SINE|B4	121178	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
diff_RLAGL_Vector_cond1_3540	chr15	41447181	41447675	+	9.20299	NA	promoter-TSS (NM_001130166)	promoter-TSS (NM_001130166)	-54	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
diff_RLAGL_Vector_cond1_5814	chr2	135853116	135853392	+	9.20093	NA	intron (NM_013829, intron 2 of 36)	intron (NM_013829, intron 2 of 36)	111424	NM_013829	18798	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding
diff_RLAGL_Vector_cond1_7562	chr5	18487320	18487664	+	9.19966	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-127079	NM_010305	14677	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding
diff_RLAGL_Vector_cond1_3217	chr14	74972382	74972613	+	9.19844	NA	Intergenic	Intergenic	-2589	NR_046078	100043169	Mm.145900	NR_046078		Gm4278	-	predicted gene 4278	ncRNA
diff_RLAGL_Vector_cond1_7744	chr5	63740343	63740544	+	9.19842	NA	intron (NM_177006, intron 2 of 6)	L1MB8|LINE|L1	-72052	NM_029554	76261	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding
diff_RLAGL_Vector_cond1_2843	chr13	83820547	83821055	+	9.19790	NA	Intergenic	Intergenic	-70407	NR_036594	72677	Mm.245636	NR_036594	ENSMUSG00000100891	2810049E08Rik	-	RIKEN cDNA 2810049E08 gene	ncRNA
diff_RLAGL_Vector_cond1_3545	chr15	41830635	41831055	+	9.19605	NA	promoter-TSS (NM_001130164)	promoter-TSS (NM_001130164)	-113	NM_001130164	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
diff_RLAGL_Vector_cond1_2327	chr12	79674893	79675104	+	9.19287	NA	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	249735	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA
diff_RLAGL_Vector_cond1_1308	chr10	107196393	107196653	+	9.18761	NA	Intergenic	Intergenic	-72859	NM_198636	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding
diff_RLAGL_Vector_cond1_5634	chr2	93132142	93132549	+	9.18659	NA	Intergenic	Intergenic	-55239	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding
diff_RLAGL_Vector_cond1_7532	chr5	8866471	8866813	+	9.18532	NA	TTS (NM_011075)	TTS (NM_011075)	-27079	NM_008830	18670	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding
diff_RLAGL_Vector_cond1_3431	chr15	6873918	6874160	+	9.18513	NA	intron (NM_001310469, intron 1 of 17)	intron (NM_001310469, intron 1 of 17)	274	NM_011019	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding
diff_RLAGL_Vector_cond1_9283	chr7	135735673	135736134	+	9.18259	NA	Intergenic	Intergenic	-19524	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding
diff_RLAGL_Vector_cond1_1972	chr11	116818809	116819039	+	9.18179	NA	intron (NM_026280, intron 1 of 3)	intron (NM_026280, intron 1 of 3)	9122	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding
diff_RLAGL_Vector_cond1_8405	chr6	72538710	72539103	+	9.17344	NA	Intergenic	Intergenic	-5485	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding
diff_RLAGL_Vector_cond1_5405	chr2	35589860	35590204	+	9.17343	NA	intron (NM_001290637, intron 1 of 16)	intron (NM_001290637, intron 1 of 16)	7192	NM_001290637	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_6068	chr2	172207049	172207260	+	9.17258	NA	Intergenic	Intergenic	-41338	NM_008561	17201	Mm.57183	NM_008561	ENSMUSG00000038537	Mc3r	MC3-R	melanocortin 3 receptor	protein-coding
diff_RLAGL_Vector_cond1_7651	chr5	37717673	37717875	+	9.17132	NA	promoter-TSS (NM_022416)	promoter-TSS (NM_022416)	-621	NM_022416	64293	Mm.103714	NM_022416	ENSMUSG00000029123	Stk32b	2510009F08Rik|STKG6|Stk32|YANK2	serine/threonine kinase 32B	protein-coding
diff_RLAGL_Vector_cond1_7707	chr5	49329133	49329336	+	9.17108	NA	Intergenic	Intergenic	-43575	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
diff_RLAGL_Vector_cond1_2233	chr12	52006284	52006758	+	9.16792	NA	promoter-TSS (NM_029545)	promoter-TSS (NM_029545)	-20	NM_029545	328092	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding
diff_RLAGL_Vector_cond1_10326	chr9	116857981	116858633	+	9.16605	NA	intron (NM_001172122, intron 4 of 13)	intron (NM_001172122, intron 4 of 13)	394176	NM_001172124	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
diff_RLAGL_Vector_cond1_575	chr1	152625018	152625389	+	9.16571	NA	promoter-TSS (NM_016846)	promoter-TSS (NM_016846)	-92	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding
diff_RLAGL_Vector_cond1_3993	chr16	45378533	45378870	+	9.16514	NA	Intergenic	Intergenic	30352	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding
diff_RLAGL_Vector_cond1_8025	chr5	134966319	134966807	+	9.16461	NA	Intergenic	Intergenic	-19629	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding
diff_RLAGL_Vector_cond1_968	chr10	31592786	31593159	+	9.16457	NA	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	16753	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
diff_RLAGL_Vector_cond1_538	chr1	140415783	140416156	+	9.16135	NA	intron (NM_001081027, intron 8 of 27)	intron (NM_001081027, intron 8 of 27)	169712	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding
diff_RLAGL_Vector_cond1_5347	chr2	23993102	23993490	+	9.15762	NA	Intergenic	Intergenic	56083	NM_080462	140483	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding
diff_RLAGL_Vector_cond1_963	chr10	31312803	31313267	+	9.15686	NA	promoter-TSS (NM_027168)	promoter-TSS (NM_027168)	-370	NM_027168	69692	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_1763	chr11	77894144	77894531	+	9.15619	NA	promoter-TSS (NM_008952)	promoter-TSS (NM_008952)	-465	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding
diff_RLAGL_Vector_cond1_6661	chr3	142630386	142630674	+	9.15576	NA	exon (NM_010260, exon 6 of 11)	exon (NM_010260, exon 6 of 11)	-6584	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA
diff_RLAGL_Vector_cond1_4200	chr16	92498526	92498729	+	9.15444	NA	exon (NM_172469, exon 1 of 6)	exon (NM_172469, exon 1 of 6)	480	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding
diff_RLAGL_Vector_cond1_5954	chr2	153741164	153741469	+	9.15242	NA	promoter-TSS (NM_007896)	promoter-TSS (NM_007896)	29	NM_007896	13589	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding
diff_RLAGL_Vector_cond1_9527	chr8	48222423	48222679	+	9.15215	NA	Intergenic	Intergenic	112538	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding
diff_RLAGL_Vector_cond1_7640	chr5	36374136	36374415	+	9.14912	NA	intron (NM_030889, intron 1 of 26)	intron (NM_030889, intron 1 of 26)	23864	NM_030889	81840	Mm.34113	NM_030889	ENSMUSG00000029093	Sorcs2	N28137|mKIAA1329	sortilin-related VPS10 domain containing receptor 2	protein-coding
diff_RLAGL_Vector_cond1_1078	chr10	59899683	59899889	+	9.14903	NA	Intergenic	Intergenic	20195	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ (Hsp40) homolog, subfamily B, member 12	protein-coding
diff_RLAGL_Vector_cond1_3329	chr14	105328978	105329240	+	9.14809	NA	Intergenic	Intergenic	70436	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_9106	chr7	83847695	83847949	+	9.14671	NA	Intergenic	Intergenic	36519	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding
diff_RLAGL_Vector_cond1_4946	chr18	70141592	70141802	+	9.14555	NA	promoter-TSS (NM_001082553)	promoter-TSS (NM_001082553)	-92	NM_001082553	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_8901	chr7	31139823	31140035	+	9.14290	NA	intron (NM_027898, intron 7 of 18)	intron (NM_027898, intron 7 of 18)	11121	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding
diff_RLAGL_Vector_cond1_6429	chr3	85573853	85574144	+	9.14288	NA	promoter-TSS (NM_144896)	promoter-TSS (NM_144896)	-131	NM_144896	229487	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding
diff_RLAGL_Vector_cond1_3379	chr14	120910805	120911069	+	9.14221	NA	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-257	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding
diff_RLAGL_Vector_cond1_2578	chr13	20133956	20134178	+	9.14196	NA	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	43560	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding
diff_RLAGL_Vector_cond1_627	chr1	163311940	163312523	+	9.13658	NA	intron (NM_175686, intron 1 of 4)	CpG	1419	NM_001025570	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_2243	chr12	54260625	54260828	+	9.13227	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	27111	NR_108033	73592	Mm.416874	NR_108033		1700104L18Rik	-	RIKEN cDNA 1700104L18 gene	ncRNA
diff_RLAGL_Vector_cond1_9576	chr8	62685539	62685968	+	9.13220	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	-265479	NM_001252620	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding
diff_RLAGL_Vector_cond1_6130	chr2	181653404	181653765	+	9.13147	NA	intron (NM_133701, intron 19 of 20)	intron (NM_133701, intron 19 of 20)	18056	NM_009236	20672	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding
diff_RLAGL_Vector_cond1_7687	chr5	44886639	44886843	+	9.13072	NA	Intergenic	Intergenic	-79460	NR_073013	75783	Mm.218472	NR_073013	ENSMUSG00000062496	4930431F12Rik	-	RIKEN cDNA 4930431F12 gene	ncRNA
diff_RLAGL_Vector_cond1_7431	chr4	147809375	147810145	+	9.13064	NA	promoter-TSS (NM_001127189)	promoter-TSS (NM_001127189)	28	NM_001127189	100041677	Mm.327194	NM_001127189	ENSMUSG00000078495	Gm13157	OTTMUSG00000010679	predicted gene 13157	protein-coding
diff_RLAGL_Vector_cond1_7661	chr5	39715970	39716457	+	9.12859	NA	Intergenic	Intergenic	-71582	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_669	chr1	171477935	171478269	+	9.12816	NA	Intergenic	Intergenic	-25376	NM_019484	56009	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding
diff_RLAGL_Vector_cond1_844	chr10	4346869	4347138	+	9.12364	NA	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	41105	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_7451	chr4	149876309	149876685	+	9.12320	NA	Intergenic	Intergenic	78509	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
diff_RLAGL_Vector_cond1_3169	chr14	62761287	62761578	+	9.12250	NA	promoter-TSS (NM_008715)	promoter-TSS (NM_008715)	-320	NM_008715	18130	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding
diff_RLAGL_Vector_cond1_5208	chr19	53437471	53437700	+	9.12205	NA	Intergenic	Intergenic	27211	NR_028427	381232	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|ENSMUSG00000074788|Gm10758	myocardial infarction associated transcript 1	ncRNA
diff_RLAGL_Vector_cond1_5199	chr19	52448985	52449283	+	9.12188	NA	Intergenic	Intergenic	184837	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding
diff_RLAGL_Vector_cond1_1326	chr10	110600102	110600852	+	9.12142	NA	promoter-TSS (NR_028438)	promoter-TSS (NR_028438)	-173	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA
diff_RLAGL_Vector_cond1_1189	chr10	82241281	82241602	+	9.12095	NA	promoter-TSS (NM_001105557)	promoter-TSS (NM_001105557)	-166	NM_001105557	237411		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding
diff_RLAGL_Vector_cond1_7683	chr5	44515003	44515254	+	9.11875	NA	intron (NM_001077398, intron 5 of 8)	intron (NM_001077398, intron 5 of 8)	284618	NM_010698	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding
diff_RLAGL_Vector_cond1_6934	chr4	41094357	41094701	+	9.11813	NA	intron (NM_016689, intron 3 of 5)	intron (NM_016689, intron 3 of 5)	3654	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding
diff_RLAGL_Vector_cond1_5180	chr19	46395031	46395313	+	9.11772	NA	intron (NM_016860, intron 1 of 10)	CpG	563	NM_016860	54130	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding
diff_RLAGL_Vector_cond1_9591	chr8	68157136	68157560	+	9.11403	NA	Intergenic	Intergenic	-119180	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding
diff_RLAGL_Vector_cond1_7665	chr5	40953002	40953248	+	9.10934	NA	Intergenic	Intergenic	754566	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_200	chr1	58923699	58923932	+	9.10787	NA	intron (NM_172406, intron 4 of 15)	intron (NM_172406, intron 4 of 15)	49667	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding
diff_RLAGL_Vector_cond1_4542	chr17	65484620	65484999	+	9.10557	NA	intron (NM_001289485, intron 6 of 15)	C-rich|Low_complexity|Low_complexity	55973	NM_001289486	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding
diff_RLAGL_Vector_cond1_6084	chr2	173970661	173971139	+	9.10542	NA	Intergenic	Intergenic	-106151	NM_001102424	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding
diff_RLAGL_Vector_cond1_3323	chr14	103990024	103990359	+	9.10508	NA	intron (NR_045953, intron 1 of 2)	MIR|SINE|MIR	36951	NR_045953	73877	Mm.399172	NR_045953		4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA
diff_RLAGL_Vector_cond1_6985	chr4	53452060	53452435	+	9.09975	NA	intron (NM_001159633, intron 1 of 12)	ORR1E|LTR|ERVL-MaLR	11834	NM_133891	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding
diff_RLAGL_Vector_cond1_6919	chr4	34207408	34207653	+	9.09762	NA	Intergenic	L1_Mur2|LINE|L1	-157463	NM_026293	67652	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding
diff_RLAGL_Vector_cond1_8926	chr7	39517546	39518172	+	9.09761	NA	promoter-TSS (NM_001004139)	promoter-TSS (NM_001004139)	93	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding
diff_RLAGL_Vector_cond1_6243	chr3	35133521	35134030	+	9.09610	NA	Intergenic	Intergenic	-211124	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA
diff_RLAGL_Vector_cond1_8635	chr6	127356423	127356880	+	9.09469	NA	Intergenic	Intergenic	-48684	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA
diff_RLAGL_Vector_cond1_6030	chr2	167721333	167721771	+	9.09326	NA	Intergenic	Intergenic	30375	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA
diff_RLAGL_Vector_cond1_5642	chr2	97466188	97466648	+	9.09183	NA	intron (NM_001289742, intron 6 of 7)	intron (NM_001289742, intron 6 of 7)	-1239	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
diff_RLAGL_Vector_cond1_545	chr1	144018356	144019098	+	9.09158	NA	Intergenic	Intergenic	-14578	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding
diff_RLAGL_Vector_cond1_1525	chr11	18753804	18754122	+	9.08990	NA	Intergenic	Intergenic	265006	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_1719	chr11	69409452	69409710	+	9.08936	NA	intron (NM_001017426, intron 1 of 22)	intron (NM_001017426, intron 1 of 22)	4094	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding
diff_RLAGL_Vector_cond1_2190	chr12	37942194	37942508	+	9.08934	NA	intron (NM_178681, intron 1 of 24)	MTE-int|LTR|ERVL-MaLR	61646	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding
diff_RLAGL_Vector_cond1_1056	chr10	54161128	54161696	+	9.08842	NA	Intergenic	MLTR18C_MM|LTR|ERVK	85490	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA
diff_RLAGL_Vector_cond1_5261	chr2	7160113	7160482	+	9.08741	NA	intron (NM_001110231, intron 3 of 15)	MTEa|LTR|ERVL-MaLR	-78995	NM_001110229	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
diff_RLAGL_Vector_cond1_8087	chr5	144100192	144100462	+	9.08667	NA	promoter-TSS (NM_001081109)	promoter-TSS (NM_001081109)	-109	NM_001081109	231876	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding
diff_RLAGL_Vector_cond1_5760	chr2	124607402	124607622	+	9.08582	NA	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-2784	NM_001291000	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
diff_RLAGL_Vector_cond1_4535	chr17	64199208	64199466	+	9.08578	NA	Intergenic	Intergenic	132546	NM_144859	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding
diff_RLAGL_Vector_cond1_8031	chr5	135405506	135405860	+	9.08282	NA	TTS (NM_146001)	TTS (NM_146001)	-11137	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding
diff_RLAGL_Vector_cond1_2838	chr13	81657636	81658090	+	9.08179	NA	promoter-TSS (NM_030257)	promoter-TSS (NM_030257)	57	NM_030257	80289	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4708	chr17	94864473	94865003	+	9.08108	NA	promoter-TSS (NM_001024731)	promoter-TSS (NM_001024731)	-180	NM_001024731	100044193		NM_001024731		Gm20939	-	predicted gene, 20939	protein-coding
diff_RLAGL_Vector_cond1_7929	chr5	113295892	113296124	+	9.08077	NA	intron (NM_172718, intron 2 of 24)	intron (NM_172718, intron 2 of 24)	14778	NM_001254731	52850	Mm.200203	NM_172718	ENSMUSG00000042216	Sgsm1	2410098H20Rik|AA408781|D5Bwg1524e|E130107M15|NuIP|Rutbc2	small G protein signaling modulator 1	protein-coding
diff_RLAGL_Vector_cond1_4903	chr18	59175187	59175861	+	9.07941	NA	5' UTR (NM_001081328, exon 1 of 3)	5' UTR (NM_001081328, exon 1 of 3)	184	NM_001081328	78923	Mm.84007	NM_001081328		Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding
diff_RLAGL_Vector_cond1_10042	chr9	42798392	42798594	+	9.07741	NA	intron (NM_175481, intron 3 of 20)	intron (NM_175481, intron 3 of 20)	145878	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
diff_RLAGL_Vector_cond1_5170	chr19	43698750	43699007	+	9.07225	NA	intron (NM_053103, intron 3 of 12)	intron (NM_053103, intron 3 of 12)	9189	NM_053103	93685	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
diff_RLAGL_Vector_cond1_2475	chr12	116182456	116182730	+	9.06992	NA	Intergenic	Intergenic	80432	NM_146039	217935	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding
diff_RLAGL_Vector_cond1_5089	chr19	12489035	12489354	+	9.06924	NA	intron (NM_172442, intron 2 of 8)	intron (NM_172442, intron 2 of 8)	12802	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2632	chr13	34446344	34446625	+	9.06808	NA	Intergenic	Intergenic	-101302	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding
diff_RLAGL_Vector_cond1_2314	chr12	75596144	75596531	+	9.06489	NA	promoter-TSS (NM_012024)	promoter-TSS (NM_012024)	-137	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding
diff_RLAGL_Vector_cond1_5251	chr2	5566721	5566923	+	9.06455	NA	intron (NM_177343, intron 1 of 10)	L1MB3|LINE|L1	109224	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding
diff_RLAGL_Vector_cond1_4799	chr18	31634129	31634356	+	9.06366	NA	promoter-TSS (NM_172965)	promoter-TSS (NM_172965)	-141	NM_172965	269003	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding
diff_RLAGL_Vector_cond1_3916	chr16	26643103	26643828	+	9.06146	NA	intron (NM_134103, intron 2 of 7)	intron (NM_134103, intron 2 of 7)	61760	NM_008364	16180	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding
diff_RLAGL_Vector_cond1_4129	chr16	77914274	77914819	+	9.05722	NA	Intergenic	Intergenic	268273	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA
diff_RLAGL_Vector_cond1_3956	chr16	37901357	37901599	+	9.05626	NA	Intergenic	MER76|LTR|ERVL	-15018	NM_153394	239845	Mm.228018	NM_153394	ENSMUSG00000046961	Gpr156	Gababl	G protein-coupled receptor 156	protein-coding
diff_RLAGL_Vector_cond1_8911	chr7	35382968	35383343	+	9.05587	NA	intron (NM_027897, intron 11 of 14)	ZP3AR|Satellite|Satellite	13612	NM_178643	101831	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding
diff_RLAGL_Vector_cond1_9639	chr8	77947759	77948016	+	9.05459	NA	Intergenic	MT2B|LTR|ERVL	-223435	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding
diff_RLAGL_Vector_cond1_1702	chr11	63544094	63544342	+	9.05329	NA	Intergenic	Intergenic	-158149	NR_105772	102466632		NR_105772	ENSMUSG00000098829	Mir6354	Gm27282|mmu-mir-6354	microRNA 6354	ncRNA
diff_RLAGL_Vector_cond1_5925	chr2	150451185	150451855	+	9.05081	NA	promoter-TSS (NM_001310645)	promoter-TSS (NM_001310645)	-19	NM_001310645	668923	Mm.393876	NM_001177550	ENSMUSG00000068130	Zfp442	OTTMUSG00000015730|ZIPO-II	zinc finger protein 442	protein-coding
diff_RLAGL_Vector_cond1_4520	chr17	57795340	57795853	+	9.04993	NA	intron (NM_001081653, intron 1 of 23)	RLTR26D_MM|LTR|ERVK	26026	NM_001081653	620292	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding
diff_RLAGL_Vector_cond1_8333	chr6	54789140	54789514	+	9.04632	NA	Intergenic	Intergenic	-27589	NM_199143	387524	Mm.286149	NM_199143		Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding
diff_RLAGL_Vector_cond1_6622	chr3	132683825	132684559	+	9.04499	NA	promoter-TSS (NM_001163455)	promoter-TSS (NM_001163455)	48	NM_001163455	271981	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding
diff_RLAGL_Vector_cond1_2228	chr12	50981257	50981709	+	9.04374	NA	Intergenic	Intergenic	-23673	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
diff_RLAGL_Vector_cond1_4516	chr17	57031532	57032252	+	9.04166	NA	promoter-TSS (NM_010613)	promoter-TSS (NM_010613)	-385	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding
diff_RLAGL_Vector_cond1_8411	chr6	78494710	78494987	+	9.04144	NA	Intergenic	Intergenic	-25974	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515	regenerating islet-derived 3 gamma	protein-coding
diff_RLAGL_Vector_cond1_422	chr1	113412908	113413200	+	9.04018	NA	Intergenic	RLTR9A3|LTR|ERVK	-1548136	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
diff_RLAGL_Vector_cond1_8150	chr6	6433164	6433454	+	9.04001	NA	Intergenic	Intergenic	145349	NM_009169	20422	Mm.2469	NM_009169		Shfm1	DSS1|Shfdg1|Shfg	split hand/foot malformation (ectrodactyly) type 1	protein-coding
diff_RLAGL_Vector_cond1_4221	chr16	97250533	97250874	+	9.03924	NA	Intergenic	Intergenic	-79968	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_294	chr1	78879104	78879635	+	9.03745	NA	Intergenic	Intergenic	62420	NM_021342	57814	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding
diff_RLAGL_Vector_cond1_6813	chr4	8245599	8245929	+	9.03661	NA	Intergenic	Intergenic	-6723	NM_007592	12319	Mm.119320	NM_007592		Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding
diff_RLAGL_Vector_cond1_8146	chr6	5762931	5763168	+	9.03599	NA	intron (NM_010063, intron 2 of 16)	intron (NM_010063, intron 2 of 16)	37410	NM_001191026	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding
diff_RLAGL_Vector_cond1_2638	chr13	37130696	37131004	+	9.03577	NA	Intergenic	Intergenic	-80606	NM_001166391	74145	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding
diff_RLAGL_Vector_cond1_1649	chr11	51916510	51916928	+	9.03510	NA	Intergenic	Intergenic	-50912	NM_029976	52626	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding
diff_RLAGL_Vector_cond1_8677	chr6	134377242	134377481	+	9.03498	NA	Intergenic	Intergenic	-18968	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding
diff_RLAGL_Vector_cond1_7305	chr4	129272351	129272630	+	9.03074	NA	Intergenic	Intergenic	-11086	NM_001285867	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding
diff_RLAGL_Vector_cond1_8145	chr6	5725516	5725865	+	9.02721	NA	promoter-TSS (NM_001191027)	promoter-TSS (NM_001191027)	51	NM_001191026	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding
diff_RLAGL_Vector_cond1_399	chr1	105784248	105784886	+	9.02506	NA	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	3844	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding
diff_RLAGL_Vector_cond1_8209	chr6	21949173	21949646	+	9.02490	NA	promoter-TSS (NM_023626)	promoter-TSS (NM_023626)	-162	NM_001311061	71777	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding
diff_RLAGL_Vector_cond1_2141	chr12	27507629	27508151	+	9.02367	NA	Intergenic	Intergenic	-165172	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding
diff_RLAGL_Vector_cond1_8167	chr6	11907037	11907954	+	9.02307	NA	promoter-TSS (NM_010886)	promoter-TSS (NM_010886)	-49	NM_010886	17992	Mm.415865	NM_010886	ENSMUSG00000029632	Ndufa4	MLRQ	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	protein-coding
diff_RLAGL_Vector_cond1_8182	chr6	13871111	13871844	+	9.02104	NA	promoter-TSS (NR_045995)	promoter-TSS (NR_045995)	6	NR_024619	66520	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	ncRNA
diff_RLAGL_Vector_cond1_1617	chr11	40755145	40755511	+	9.01914	NA	promoter-TSS (NM_009831)	promoter-TSS (NM_009831)	-42	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding
diff_RLAGL_Vector_cond1_4843	chr18	40219343	40219664	+	9.01898	NA	promoter-TSS (NM_023311)	promoter-TSS (NM_023311)	-104	NM_023311	67180	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding
diff_RLAGL_Vector_cond1_6710	chr3	148422712	148423157	+	9.01356	NA	Intergenic	Intergenic	531701	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_916	chr10	20170349	20170691	+	9.01248	NA	intron (NM_001198635, intron 1 of 17)	intron (NM_001198635, intron 1 of 17)	21600	NM_008635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding
diff_RLAGL_Vector_cond1_6292	chr3	52046108	52046359	+	9.01207	NA	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	58773	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2138	chr12	27357186	27357717	+	9.01188	NA	Intergenic	Intergenic	-14733	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding
diff_RLAGL_Vector_cond1_8299	chr6	46739786	46740030	+	9.01099	NA	intron (NM_001004357, intron 13 of 23)	intron (NM_001004357, intron 13 of 23)	-504488	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_10102	chr9	59577947	59578187	+	9.00556	NA	promoter-TSS (NM_175235)	promoter-TSS (NM_175235)	-270	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding
diff_RLAGL_Vector_cond1_4859	chr18	44577619	44577860	+	9.00393	NA	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-83926	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA
diff_RLAGL_Vector_cond1_10347	chr9	119614189	119614390	+	9.00196	NA	intron (NM_009134, intron 26 of 27)	intron (NM_009134, intron 26 of 27)	-35273	NM_021544	20271	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding
diff_RLAGL_Vector_cond1_9884	chr9	5121252	5121478	+	9.00161	NA	Intergenic	RMER1B|Other|Other	-177152	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding
diff_RLAGL_Vector_cond1_7244	chr4	117929494	117929736	+	8.99881	NA	5' UTR (NM_001284193, exon 1 of 5)	5' UTR (NM_001284193, exon 1 of 5)	148	NM_001284193	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding
diff_RLAGL_Vector_cond1_2805	chr13	72628437	72628834	+	8.99740	NA	promoter-TSS (NM_010574)	promoter-TSS (NM_010574)	-71	NR_030701	328287	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA
diff_RLAGL_Vector_cond1_9123	chr7	90475870	90476447	+	8.99722	NA	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-163	NM_026734	68472	Mm.289791	NM_026734		Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding
diff_RLAGL_Vector_cond1_5671	chr2	105398715	105399518	+	8.99560	NA	exon (NM_009037, exon 1 of 6)	exon (NM_009037, exon 1 of 6)	203	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding
diff_RLAGL_Vector_cond1_2166	chr12	33388898	33389117	+	8.99514	NA	intron (NR_131031, intron 1 of 3)	intron (NR_131031, intron 1 of 3)	5753	NR_131031	75836	Mm.410807	NR_131031		Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA
diff_RLAGL_Vector_cond1_1442	chr10	128909255	128909546	+	8.99415	NA	promoter-TSS (NM_001282966)	promoter-TSS (NM_001282966)	55	NM_001282966	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding
diff_RLAGL_Vector_cond1_8147	chr6	6100982	6101210	+	8.99317	NA	intron (NM_001177572, intron 11 of 17)	intron (NM_001177572, intron 11 of 17)	116077	NM_015829	50799	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding
diff_RLAGL_Vector_cond1_2085	chr12	13543499	13544102	+	8.99253	NA	intron (NM_027706, intron 48 of 51)	intron (NM_027706, intron 48 of 51)	274673	NM_027706	71169	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding
diff_RLAGL_Vector_cond1_6668	chr3	144205454	144205764	+	8.99129	NA	promoter-TSS (NM_010723)	promoter-TSS (NM_010723)	-354	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding
diff_RLAGL_Vector_cond1_4793	chr18	25486730	25487534	+	8.98802	NA	intron (NM_001174074, intron 10 of 11)	C-rich|Low_complexity|Low_complexity	266851	NM_001146293	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
diff_RLAGL_Vector_cond1_4473	chr17	49614847	49615193	+	8.98751	NA	promoter-TSS (NM_177052)	promoter-TSS (NM_177052)	-152	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding
diff_RLAGL_Vector_cond1_9196	chr7	112826171	112826578	+	8.98461	NA	intron (NM_001166584, intron 2 of 13)	intron (NM_001166584, intron 2 of 13)	66990	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding
diff_RLAGL_Vector_cond1_5654	chr2	102401055	102401314	+	8.98340	NA	promoter-TSS (NM_020267)	promoter-TSS (NM_020267)	-284	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding
diff_RLAGL_Vector_cond1_6636	chr3	136289504	136289917	+	8.98225	NA	intron (NM_001033350, intron 1 of 16)	RLTR13A3|LTR|ERVK	36356	NM_001310749	242248	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding
diff_RLAGL_Vector_cond1_9730	chr8	95888260	95888658	+	8.97859	NA	promoter-TSS (NM_010325)	promoter-TSS (NM_010325)	-94	NM_010325	14719	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_1956	chr11	115450233	115450495	+	8.97786	NA	Intergenic	ID4_|SINE|ID	-2304	NR_039549	100628623		NR_039549	ENSMUSG00000093096	Mir3968	mmu-mir-3968|mu-mir-3968	microRNA 3968	ncRNA
diff_RLAGL_Vector_cond1_6534	chr3	109368740	109369244	+	8.97714	NA	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	28309	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding
diff_RLAGL_Vector_cond1_10032	chr9	40455791	40456093	+	8.97414	NA	promoter-TSS (NM_172768)	promoter-TSS (NM_172768)	-178	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_2955	chr13	116712312	116712550	+	8.97350	NA	Intergenic	Intergenic	313085	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding
diff_RLAGL_Vector_cond1_6213	chr3	22022452	22022779	+	8.97041	NA	Intergenic	Intergenic	-54037	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_85	chr1	21961031	21961248	+	8.97003	NA	intron (NM_001310477, intron 1 of 12)	CpG	803	NM_001160139	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding
diff_RLAGL_Vector_cond1_7316	chr4	131762570	131762977	+	8.96830	NA	Intergenic	Intergenic	75505	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding
diff_RLAGL_Vector_cond1_9663	chr8	81844187	81844412	+	8.96784	NA	intron (NM_001024617, intron 7 of 24)	intron (NM_001024617, intron 7 of 24)	501737	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding
diff_RLAGL_Vector_cond1_3640	chr15	64075612	64075825	+	8.96594	NA	Intergenic	Intergenic	-15270	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding
diff_RLAGL_Vector_cond1_5795	chr2	132879461	132879886	+	8.96510	NA	exon (NM_177303, exon 2 of 5)	exon (NM_177303, exon 2 of 5)	1189	NM_177303	320974	Mm.357342	NM_177303	ENSMUSG00000043110	Lrrn4	B430119L13Rik|Nlrr4	leucine rich repeat neuronal 4	protein-coding
diff_RLAGL_Vector_cond1_9629	chr8	75083842	75084110	+	8.96491	NA	Intergenic	Intergenic	-9642	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding
diff_RLAGL_Vector_cond1_4041	chr16	56261832	56262039	+	8.96317	NA	intron (NM_174876, intron 15 of 19)	intron (NM_174876, intron 15 of 19)	57622	NM_174876	224224	Mm.151998	NM_174876	ENSMUSG00000035270	Impg2	IPM200|PG10.2|Rsbp|Spacrcan	interphotoreceptor matrix proteoglycan 2	protein-coding
diff_RLAGL_Vector_cond1_9357	chr8	6731422	6731737	+	8.95684	NA	Intergenic	Intergenic	-1626347	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
diff_RLAGL_Vector_cond1_6128	chr2	181043560	181043770	+	8.95483	NA	Intergenic	MIR3|SINE|MIR	-4488	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding
diff_RLAGL_Vector_cond1_8516	chr6	100563803	100564040	+	8.95432	NA	Intergenic	Intergenic	36521	NR_040525	73395	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA
diff_RLAGL_Vector_cond1_994	chr10	37138878	37139088	+	8.95400	NA	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	-57	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
diff_RLAGL_Vector_cond1_1595	chr11	33201151	33201459	+	8.95282	NA	exon (NM_019916, exon 3 of 3)	exon (NM_019916, exon 3 of 3)	2283	NM_019916	27140	Mm.25362	NM_019916	ENSMUSG00000040610	Tlx3	Hox11l2|Rnx|Tlx1l2	T cell leukemia, homeobox 3	protein-coding
diff_RLAGL_Vector_cond1_6980	chr4	52429612	52429817	+	8.95261	NA	TTS (NR_045175)	TTS (NR_045175)	9250	NR_045175	72648	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_780	chr1	187997593	187998132	+	8.95183	NA	promoter-TSS (NM_011935)	promoter-TSS (NM_011935)	35	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding
diff_RLAGL_Vector_cond1_8940	chr7	42834932	42835238	+	8.95045	NA	intron (NR_046214, intron 1 of 3)	RLTR13A3|LTR|ERVK	32149	NR_046214	100039706	Mm.260936	NR_046214	ENSMUSG00000092225	Gm2381	-	zinc finger protein 936 pseudogene	pseudo
diff_RLAGL_Vector_cond1_9131	chr7	93153040	93153379	+	8.94999	NA	Intergenic	MMERVK10D3_LTR|LTR|ERVK	73330	NM_021427	58238	Mm.113787	NM_021427		Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding
diff_RLAGL_Vector_cond1_668	chr1	171370247	171370620	+	8.94873	NA	5' UTR (NM_027893, exon 1 of 9)	5' UTR (NM_027893, exon 1 of 9)	260	NM_001122680	71740	Mm.263414	NM_027893	ENSMUSG00000006411	Pvrl4	1200017F15Rik|Prr4	poliovirus receptor-related 4	protein-coding
diff_RLAGL_Vector_cond1_6939	chr4	42950229	42950481	+	8.94777	NA	Intergenic	CpG	-2739	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ (Hsp40) homolog, subfamily B, member 5	protein-coding
diff_RLAGL_Vector_cond1_9728	chr8	95807457	95807748	+	8.94712	NA	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-140	NM_153164	234594	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding
diff_RLAGL_Vector_cond1_10002	chr9	34993923	34994343	+	8.94470	NA	intron (NM_001190914, intron 6 of 16)	MIR3|SINE|MIR	-122595	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA
diff_RLAGL_Vector_cond1_6106	chr2	178264479	178264743	+	8.94407	NA	intron (NM_001177789, intron 3 of 12)	intron (NM_001177789, intron 3 of 12)	71527	NM_001007154	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding
diff_RLAGL_Vector_cond1_5086	chr19	11965216	11965631	+	8.94390	NA	promoter-TSS (NM_001033174)	promoter-TSS (NM_001033174)	-421	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding
diff_RLAGL_Vector_cond1_10429	chrX	49028463	49028668	+	8.94231	NA	intron (NM_001271447, intron 10 of 15)	MLT1A0|LTR|ERVL-MaLR	-150852	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding
diff_RLAGL_Vector_cond1_6553	chr3	117723467	117723716	+	8.93197	NA	Intergenic	Intergenic	145345	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
diff_RLAGL_Vector_cond1_7183	chr4	106249694	106249950	+	8.93124	NA	Intergenic	RSINE1|SINE|B4	-66391	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding
diff_RLAGL_Vector_cond1_1717	chr11	69323602	69324139	+	8.93095	NA	promoter-TSS (NM_172560)	promoter-TSS (NM_172560)	3	NM_172560	216846	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8	centrobin, centrosomal BRCA2 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_2381	chr12	99351879	99352365	+	8.93007	NA	intron (NM_183186, intron 2 of 5)	intron (NM_183186, intron 2 of 5)	97952	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding
diff_RLAGL_Vector_cond1_4999	chr18	80550472	80550738	+	8.92970	NA	Intergenic	Intergenic	-6059	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo
diff_RLAGL_Vector_cond1_2066	chr12	10128156	10128424	+	8.92872	NA	Intergenic	Intergenic	-241681	NM_001310582	70881	Mm.272843	NM_027588	ENSMUSG00000020622	Nt5c1b	4921514H13Rik|AIRP|CN-IB|cN1B	5'-nucleotidase, cytosolic IB	protein-coding
diff_RLAGL_Vector_cond1_9192	chr7	112788227	112788760	+	8.92762	NA	intron (NM_001166584, intron 2 of 13)	intron (NM_001166584, intron 2 of 13)	29109	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding
diff_RLAGL_Vector_cond1_9826	chr8	120456347	120456667	+	8.92706	NA	Intergenic	Intergenic	-32359	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1	protein-coding
diff_RLAGL_Vector_cond1_6875	chr4	23031309	23031601	+	8.92690	NA	Intergenic	L1MA4A|LINE|L1	540907	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
diff_RLAGL_Vector_cond1_8525	chr6	101490153	101490395	+	8.92625	NA	Intergenic	RLTR44A|LTR|ERVK	-112377	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
diff_RLAGL_Vector_cond1_2850	chr13	86068029	86068368	+	8.92575	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-21403	NM_007749	12867	Mm.378898	NM_007749		Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding
diff_RLAGL_Vector_cond1_6856	chr4	17853217	17853565	+	8.92535	NA	promoter-TSS (NM_019724)	promoter-TSS (NM_019724)	-91	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
diff_RLAGL_Vector_cond1_8739	chr6	143034583	143034813	+	8.92526	NA	intron (NM_001109688, intron 16 of 24)	ORR1B1|LTR|ERVL-MaLR	65454	NM_029897	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_6468	chr3	95674231	95674537	+	8.92524	NA	Intergenic	Intergenic	13533	NM_001301705	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding
diff_RLAGL_Vector_cond1_12	chr1	6359333	6359539	+	8.92176	NA	exon (NM_001195732, exon 1 of 5)	exon (NM_001195732, exon 1 of 5)	105	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding
diff_RLAGL_Vector_cond1_1866	chr11	98740537	98740882	+	8.92021	NA	Intergenic	Intergenic	-1076	NM_178060	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding
diff_RLAGL_Vector_cond1_558	chr1	147440404	147440633	+	8.91512	NA	Intergenic	MMERVK10D3_LTR|LTR|ERVK	942831	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_6604	chr3	130180659	130180904	+	8.91481	NA	promoter-TSS (NM_198711)	promoter-TSS (NM_198711)	-64	NM_001244952	77018	Mm.91728	NM_029838	ENSMUSG00000058897	Col25a1	2700062B08Rik|CLAC-P	collagen, type XXV, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_2142	chr12	27575832	27576166	+	8.91330	NA	Intergenic	Intergenic	-233281	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding
diff_RLAGL_Vector_cond1_9052	chr7	72493358	72493561	+	8.91297	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	-186864	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding
diff_RLAGL_Vector_cond1_6536	chr3	109573746	109574008	+	8.90741	NA	promoter-TSS (NM_146139)	promoter-TSS (NM_146139)	-130	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding
diff_RLAGL_Vector_cond1_7702	chr5	48372191	48372667	+	8.90554	NA	promoter-TSS (NM_025755)	promoter-TSS (NM_025755)	37	NM_025755	66768	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding
diff_RLAGL_Vector_cond1_5513	chr2	62907778	62908008	+	8.90522	NA	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	243566	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding
diff_RLAGL_Vector_cond1_2945	chr13	115033192	115033429	+	8.90369	NA	intron (NM_001033228, intron 3 of 28)	RLTR20B4_MM|LTR|ERVK	56848	NM_134058	105083	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2668	chr13	49131498	49131841	+	8.90029	NA	intron (NM_001290311, intron 2 of 28)	intron (NM_001290311, intron 2 of 28)	16659	NM_029361	75607	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding
diff_RLAGL_Vector_cond1_1716	chr11	69235984	69236190	+	8.89970	NA	exon (NM_008192, exon 2 of 19)	exon (NM_008192, exon 2 of 19)	935	NM_008192	14919	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding
diff_RLAGL_Vector_cond1_4967	chr18	74778247	74778573	+	8.89633	NA	promoter-TSS (NR_028560)	promoter-TSS (NR_028560)	45	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA
diff_RLAGL_Vector_cond1_4707	chr17	94834723	94834932	+	8.89563	NA	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-28	NR_045964	100038746	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA
diff_RLAGL_Vector_cond1_7201	chr4	109806519	109806736	+	8.89475	NA	intron (NM_007983, intron 8 of 18)	intron (NM_007983, intron 8 of 18)	130000	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding
diff_RLAGL_Vector_cond1_73	chr1	20863781	20864179	+	8.89362	NA	Intergenic	Intergenic	26493	NR_040492	77741	Mm.159984	NR_040492	ENSMUSG00000097934	6720483E21Rik	-	RIKEN cDNA 6720483E21 gene	ncRNA
diff_RLAGL_Vector_cond1_8410	chr6	78469348	78469563	+	8.89195	NA	promoter-TSS (NM_011260)	promoter-TSS (NM_011260)	-581	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515	regenerating islet-derived 3 gamma	protein-coding
diff_RLAGL_Vector_cond1_10027	chr9	38718878	38719337	+	8.89143	NA	intron (NM_001145957, intron 1 of 18)	intron (NM_001145957, intron 1 of 18)	839	NM_001145957	67776	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding
diff_RLAGL_Vector_cond1_9358	chr8	6886880	6887418	+	8.88999	NA	Intergenic	Intergenic	1773624	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
diff_RLAGL_Vector_cond1_6835	chr4	13421553	13421856	+	8.88991	NA	Intergenic	RLTR23|LTR|ERV1	-321598	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
diff_RLAGL_Vector_cond1_9230	chr7	126625574	126625799	+	8.88989	NA	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-216	NM_019738	56312	Mm.18742	NM_019738		Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding
diff_RLAGL_Vector_cond1_5414	chr2	38287154	38287394	+	8.88829	NA	5' UTR (NM_146122, exon 1 of 22)	5' UTR (NM_146122, exon 1 of 22)	110	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding
diff_RLAGL_Vector_cond1_7862	chr5	101700342	101700877	+	8.88760	NA	Intergenic	Intergenic	-35898	NM_144955	18096	Mm.193072	NM_144955		Nkx6-1	NKX6A|Nkx6.1	NK6 homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_5700	chr2	110452584	110453037	+	8.88546	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-89817	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding
diff_RLAGL_Vector_cond1_3103	chr14	45219216	45219890	+	8.88509	NA	promoter-TSS (NM_027518)	promoter-TSS (NM_027518)	-128	NM_001310534	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding
diff_RLAGL_Vector_cond1_6168	chr3	14408831	14409375	+	8.88504	NA	Intergenic	Lx7|LINE|L1	45986	NR_033591	622229	Mm.486084	NR_033591		Gm6300	EG622229	solute carrier family 7 (cationic amino acid transporter, y+ system), member pseudogene	pseudo
diff_RLAGL_Vector_cond1_4373	chr17	32658636	32659076	+	8.88422	NA	promoter-TSS (NM_001101588)	promoter-TSS (NM_001101588)	-627	NM_001101588	631304	Mm.328950	NM_001101588	ENSMUSG00000090700	Cyp4f40	EG631304	cytochrome P450, family 4, subfamily f, polypeptide 40	protein-coding
diff_RLAGL_Vector_cond1_6395	chr3	75308940	75309265	+	8.88136	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-39024	NM_026460	67931	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding
diff_RLAGL_Vector_cond1_775	chr1	187088703	187088927	+	8.88081	NA	intron (NM_028848, intron 9 of 9)	intron (NM_028848, intron 9 of 9)	-36323	NR_040554	69308	Mm.490882	NR_040554	ENSMUSG00000089730	1700007P06Rik	-	RIKEN cDNA 1700007P06 gene	ncRNA
diff_RLAGL_Vector_cond1_6157	chr3	9500781	9500997	+	8.88008	NA	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	97811	NR_015499	320088	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA
diff_RLAGL_Vector_cond1_9521	chr8	47706774	47707070	+	8.87924	NA	Intergenic	Intergenic	7009	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding
diff_RLAGL_Vector_cond1_5156	chr19	40513668	40514026	+	8.87749	NA	promoter-TSS (NM_009166)	promoter-TSS (NM_009166)	-35	NM_009166	20411	Mm.210815	NM_009166		Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8606	chr6	122333120	122333376	+	8.87640	NA	intron (NR_073364, intron 5 of 14)	intron (NR_073364, intron 5 of 14)	6409	NM_007905	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7424	chr4	145200057	145200346	+	8.87294	NA	Intergenic	Intergenic	-5196	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13 D (yeast)	protein-coding
diff_RLAGL_Vector_cond1_9199	chr7	113513628	113513885	+	8.87258	NA	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-78	NM_001285831	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding
diff_RLAGL_Vector_cond1_1180	chr10	81317339	81317655	+	8.86887	NA	intron (NM_001293646, intron 18 of 18)	CT-rich|Low_complexity|Low_complexity	-3606	NM_027381	70312	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding
diff_RLAGL_Vector_cond1_10174	chr9	79868697	79869055	+	8.86887	NA	intron (NM_001081243, intron 2 of 5)	intron (NM_001081243, intron 2 of 5)	75235	NR_040734	74633	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA
diff_RLAGL_Vector_cond1_5984	chr2	160153805	160154134	+	8.86780	NA	Intergenic	Intergenic	137316	NR_040499	71613	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA
diff_RLAGL_Vector_cond1_5270	chr2	10142828	10143078	+	8.86658	NA	Intergenic	Intergenic	-10590	NM_172471	209378	Mm.313876	NM_172471	ENSMUSG00000025780	Itih5	4631408O11Rik|5430408M01Rik|E130106B02	inter-alpha (globulin) inhibitor H5	protein-coding
diff_RLAGL_Vector_cond1_7308	chr4	129624115	129624555	+	8.86635	NA	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-427	NM_025455	66264	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding
diff_RLAGL_Vector_cond1_6495	chr3	101667194	101667780	+	8.86547	NA	Intergenic	Intergenic	-62780	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
diff_RLAGL_Vector_cond1_9865	chr8	128034103	128034352	+	8.86377	NA	Intergenic	Intergenic	243998	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA
diff_RLAGL_Vector_cond1_4701	chr17	93486486	93486770	+	8.86360	NA	Intergenic	Intergenic	287460	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_4511	chr17	56810249	56810573	+	8.86185	NA	intron (NM_027787, intron 1 of 17)	intron (NM_027787, intron 1 of 17)	20597	NM_027787	19725	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding
diff_RLAGL_Vector_cond1_4256	chr17	12575415	12575614	+	8.86166	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-8675	NM_013667	20518	Mm.17322	NM_013667	ENSMUSG00000040966	Slc22a2	Oct2|Orct2	solute carrier family 22 (organic cation transporter), member 2	protein-coding
diff_RLAGL_Vector_cond1_4335	chr17	25785312	25785743	+	8.86059	NA	promoter-TSS (NM_026897)	promoter-TSS (NM_026897)	59	NM_001271437	68977	Mm.29230	NM_026897	ENSMUSG00000061046	Haghl	1500017E18Rik|2810014I23Rik|C330022E15Rik	hydroxyacylglutathione hydrolase-like	protein-coding
diff_RLAGL_Vector_cond1_6458	chr3	93159814	93160073	+	8.86040	NA	Intergenic	Intergenic	15156	NM_001081200	381457	Mm.458570	NM_001081200	ENSMUSG00000078657	Crnn	Gm1015	cornulin	protein-coding
diff_RLAGL_Vector_cond1_8937	chr7	42505426	42505986	+	8.86026	NA	promoter-TSS (NM_001309389)	promoter-TSS (NM_001309389)	47	NM_001309388	434178	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding
diff_RLAGL_Vector_cond1_10043	chr9	42882364	42882631	+	8.85859	NA	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	61874	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
diff_RLAGL_Vector_cond1_8853	chr7	19149084	19149360	+	8.85505	NA	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-26	NM_026111	67369	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding
diff_RLAGL_Vector_cond1_3904	chr16	24143008	24143251	+	8.85317	NA	Intergenic	Intergenic	-154517	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding
diff_RLAGL_Vector_cond1_4424	chr17	43504238	43504489	+	8.85080	NA	Intergenic	Intergenic	-1590	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding
diff_RLAGL_Vector_cond1_9	chr1	5019308	5019715	+	8.85005	NA	promoter-TSS (NM_001290372)	promoter-TSS (NM_001290372)	28	NM_021374	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding
diff_RLAGL_Vector_cond1_1756	chr11	75957522	75957813	+	8.84534	NA	Intergenic	L1ME3D|LINE|L1	-31776	NM_001291159	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding
diff_RLAGL_Vector_cond1_4886	chr18	53755657	53755908	+	8.84329	NA	Intergenic	Intergenic	-11235	NM_178686	225523	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding
diff_RLAGL_Vector_cond1_8095	chr5	146692491	146692899	+	8.84241	NA	Intergenic	Intergenic	102261	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding
diff_RLAGL_Vector_cond1_4609	chr17	77084363	77084619	+	8.84202	NA	Intergenic	L1_Mus3|LINE|L1	-1115757	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
diff_RLAGL_Vector_cond1_8586	chr6	118066571	118066933	+	8.84103	NA	intron (NM_027526, intron 1 of 12)	intron (NM_027526, intron 1 of 12)	367	NM_027526	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding
diff_RLAGL_Vector_cond1_7831	chr5	90066309	90066675	+	8.83772	NA	Intergenic	Intergenic	157504	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding
diff_RLAGL_Vector_cond1_3900	chr16	22844562	22844767	+	8.83745	NA	intron (NM_001316746, intron 1 of 7)	intron (NM_001316746, intron 1 of 7)	13005	NM_001081368	70573	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_5285	chr2	12956775	12957347	+	8.83682	NA	intron (NM_008961, intron 1 of 4)	(TTA)n|Simple_repeat|Simple_repeat	33020	NM_001305436	19212	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding
diff_RLAGL_Vector_cond1_563	chr1	149961184	149961412	+	8.83679	NA	promoter-TSS (NM_008869)	promoter-TSS (NM_008869)	-8	NM_008869	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
diff_RLAGL_Vector_cond1_5944	chr2	152741400	152741932	+	8.83462	NA	Intergenic	Intergenic	5415	NM_010495	15901	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding
diff_RLAGL_Vector_cond1_573	chr1	152543567	152544104	+	8.82422	NA	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	81276	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding
diff_RLAGL_Vector_cond1_3113	chr14	47801516	47801717	+	8.82357	NA	Intergenic	MER58A|DNA|hAT-Charlie	-97248	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA
diff_RLAGL_Vector_cond1_4950	chr18	70697953	70698208	+	8.82208	NA	Intergenic	Intergenic	129788	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding
diff_RLAGL_Vector_cond1_1007	chr10	39432676	39432992	+	8.82096	NA	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	63035	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_5398	chr2	32895900	32896219	+	8.82004	NA	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	19925	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding
diff_RLAGL_Vector_cond1_2087	chr12	13753891	13754340	+	8.81964	NA	Intergenic	MTD|LTR|ERVL-MaLR	397923	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding
diff_RLAGL_Vector_cond1_801	chr1	191215845	191216310	+	8.81458	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-32744	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding
diff_RLAGL_Vector_cond1_799	chr1	190979246	190979508	+	8.81438	NA	promoter-TSS (NR_027352)	promoter-TSS (NR_027352)	-81	NR_027352	226841	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding
diff_RLAGL_Vector_cond1_1327	chr10	110745319	110745696	+	8.81401	NA	promoter-TSS (NM_178609)	promoter-TSS (NM_178609)	42	NM_178609	52679	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e	E2F transcription factor 7	protein-coding
diff_RLAGL_Vector_cond1_1571	chr11	29692673	29693228	+	8.81326	NA	promoter-TSS (NM_194054)	promoter-TSS (NM_194054)	52	NM_194052	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding
diff_RLAGL_Vector_cond1_7214	chr4	111908046	111908247	+	8.81234	NA	Intergenic	Intergenic	-5350	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding
diff_RLAGL_Vector_cond1_7788	chr5	74240377	74240615	+	8.81203	NA	intron (NM_001286437, intron 5 of 7)	intron (NM_001286437, intron 5 of 7)	45170	NM_026878	68939	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding
diff_RLAGL_Vector_cond1_1870	chr11	98963751	98964059	+	8.81168	NA	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	3434	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding
diff_RLAGL_Vector_cond1_240	chr1	68681631	68681852	+	8.81164	NA	intron (NM_010154, intron 2 of 26)	intron (NM_010154, intron 2 of 26)	426318	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
diff_RLAGL_Vector_cond1_5213	chr19	53943859	53944150	+	8.81037	NA	promoter-TSS (NM_001168505)	promoter-TSS (NM_001168505)	-302	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_9783	chr8	113383947	113384334	+	8.81003	NA	Intergenic	Intergenic	-133142	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA
diff_RLAGL_Vector_cond1_4269	chr17	13682617	13682860	+	8.80828	NA	Intergenic	Intergenic	-77803	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Mllt4	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|S-afadin	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	protein-coding
diff_RLAGL_Vector_cond1_3522	chr15	33687394	33688080	+	8.80689	NA	exon (NM_001085421, exon 1 of 1)	exon (NM_001085421, exon 1 of 1)	146	NM_001085421	239364	Mm.60794	NM_001085421	ENSMUSG00000038984	Tspyl5	6330530B20|E130308C19Rik	testis-specific protein, Y-encoded-like 5	protein-coding
diff_RLAGL_Vector_cond1_5608	chr2	85107055	85107413	+	8.80680	NA	Intergenic	MIRc|SINE|MIR	-20773	NR_040504	74687	Mm.66996	NR_040504	ENSMUSG00000086969	4930443O20Rik	-	RIKEN cDNA 4930443O20 gene	ncRNA
diff_RLAGL_Vector_cond1_4023	chr16	52119038	52119273	+	8.80671	NA	intron (NM_001033238, intron 4 of 17)	intron (NM_001033238, intron 4 of 17)	87606	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
diff_RLAGL_Vector_cond1_5322	chr2	20339982	20340328	+	8.80306	NA	intron (NM_001081006, intron 2 of 21)	intron (NM_001081006, intron 2 of 21)	50242	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
diff_RLAGL_Vector_cond1_5615	chr2	87846611	87847176	+	8.80286	NA	Intergenic	Intergenic	-10284	NM_146638	258631	Mm.377602	NM_146638	ENSMUSG00000047039	Olfr1151	MOR177-9	olfactory receptor 1151	protein-coding
diff_RLAGL_Vector_cond1_9149	chr7	100932927	100933209	+	8.80116	NA	promoter-TSS (NM_001081116)	promoter-TSS (NM_001081116)	-907	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding
diff_RLAGL_Vector_cond1_10445	chrX	60798589	60798881	+	8.80080	NA	Intergenic	Intergenic	94695	NM_009237	20675	Mm.35784	NM_009237	ENSMUSG00000045179	Sox3	Sox-3	SRY (sex determining region Y)-box 3	protein-coding
diff_RLAGL_Vector_cond1_1430	chr10	127803114	127803456	+	8.79994	NA	intron (NM_009040, intron 1 of 3)	RLTR12B|LTR|ERVK	2132	NM_009040	19683	Mm.100276	NM_009040	ENSMUSG00000069456	Rdh16	CRAD|CRAD1|Rdh6	retinol dehydrogenase 16	protein-coding
diff_RLAGL_Vector_cond1_10233	chr9	94537261	94537609	+	8.79841	NA	exon (NM_001033145, exon 1 of 3)	exon (NM_001033145, exon 1 of 3)	646	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
diff_RLAGL_Vector_cond1_4252	chr17	11845679	11845929	+	8.79532	NA	intron (NM_016694, intron 8 of 11)	intron (NM_016694, intron 8 of 11)	37385	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA
diff_RLAGL_Vector_cond1_9914	chr9	13105361	13105750	+	8.79273	NA	intron (NR_040755, intron 1 of 3)	ORR1G|LTR|ERVL-MaLR	300	NR_040755	78219	Mm.414868	NR_040755		4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA
diff_RLAGL_Vector_cond1_8811	chr7	7188127	7188586	+	8.79151	NA	Intergenic	Intergenic	17003	NM_146179	232854	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding
diff_RLAGL_Vector_cond1_9535	chr8	53603781	53604032	+	8.79131	NA	intron (NM_146208, intron 6 of 9)	intron (NM_146208, intron 6 of 9)	35159	NM_146208	234258	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_3548	chr15	42962784	42963191	+	8.79082	NA	Intergenic	Intergenic	207831	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding
diff_RLAGL_Vector_cond1_168	chr1	45926026	45926307	+	8.78605	NA	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	-572	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding
diff_RLAGL_Vector_cond1_4234	chr17	4868530	4868816	+	8.78385	NA	Intergenic	Intergenic	-126401	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding
diff_RLAGL_Vector_cond1_7359	chr4	136174635	136175003	+	8.77914	NA	intron (NM_177733, intron 1 of 6)	intron (NM_177733, intron 1 of 6)	2545	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_5077	chr19	10182665	10183023	+	8.77857	NA	promoter-TSS (NM_146094)	promoter-TSS (NM_146094)	-44	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding
diff_RLAGL_Vector_cond1_9224	chr7	124491216	124491437	+	8.77551	NA	Intergenic	Intergenic	217609	NR_045907	73076	Mm.417827	NR_045907	ENSMUSG00000086254	3100003L05Rik	-	RIKEN cDNA 3100003L05 gene	ncRNA
diff_RLAGL_Vector_cond1_2135	chr12	26456377	26456724	+	8.77285	NA	promoter-TSS (NM_021384)	promoter-TSS (NM_021384)	-98	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_4000	chr16	48479165	48479715	+	8.77256	NA	intron (NM_010816, intron 8 of 26)	ORR1D1|LTR|ERVL-MaLR	48203	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding
diff_RLAGL_Vector_cond1_4191	chr16	91269580	91269819	+	8.77194	NA	promoter-TSS (NM_016968)	promoter-TSS (NM_016968)	-70	NM_016968	50914	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_2791	chr13	69488793	69489002	+	8.76828	NA	Intergenic	Intergenic	44967	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_2310	chr12	73584557	73584917	+	8.76663	NA	promoter-TSS (NM_008856)	promoter-TSS (NM_008856)	-59	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding
diff_RLAGL_Vector_cond1_4791	chr18	24305300	24305582	+	8.76384	NA	Intergenic	Intergenic	99447	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_5412	chr2	37065382	37065643	+	8.76099	NA	Intergenic	Intergenic	-2795	NM_146622	258615	Mm.271468	NM_146622	ENSMUSG00000083361	Olfr360	MOR159-1	olfactory receptor 360	protein-coding
diff_RLAGL_Vector_cond1_3510	chr15	31224132	31224648	+	8.75468	NA	promoter-TSS (NM_146057)	promoter-TSS (NM_146057)	5	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding
diff_RLAGL_Vector_cond1_9335	chr8	3676341	3676579	+	8.75166	NA	promoter-TSS (NM_025701)	promoter-TSS (NM_025701)	-17	NM_025701	66682	Mm.29090	NM_025701		Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding
diff_RLAGL_Vector_cond1_9693	chr8	88117512	88117929	+	8.75018	NA	Intergenic	Intergenic	-1039	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding
diff_RLAGL_Vector_cond1_10620	chrX	169320408	169320716	+	8.74823	NA	promoter-TSS (NM_008222)	promoter-TSS (NM_008222)	-219	NM_008222	15159	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding
diff_RLAGL_Vector_cond1_8623	chr6	125591880	125592304	+	8.74753	NA	intron (NM_011708, intron 10 of 51)	MLTR14|LTR|ERV1	39144	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor homolog	protein-coding
diff_RLAGL_Vector_cond1_6008	chr2	163506635	163506903	+	8.74453	NA	promoter-TSS (NM_001312906)	promoter-TSS (NM_001312906)	-88	NM_001312906	15378	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding
diff_RLAGL_Vector_cond1_5593	chr2	84378661	84379107	+	8.74360	NA	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	46382	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding
diff_RLAGL_Vector_cond1_2759	chr13	66904980	66905502	+	8.74082	NA	promoter-TSS (NM_001177750)	promoter-TSS (NM_001177750)	109	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding
diff_RLAGL_Vector_cond1_6808	chr4	8056222	8056466	+	8.73874	NA	Intergenic	RMER15|LTR|ERVL	182697	NM_007592	12319	Mm.119320	NM_007592		Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding
diff_RLAGL_Vector_cond1_8048	chr5	137472032	137472817	+	8.73599	NA	intron (NM_011741, intron 6 of 87)	ZP3AR|Satellite|Satellite	4640	NM_011741	22635	Mm.7984	NM_011741	ENSMUSG00000079173	Zan	Zan-test	zonadhesin	protein-coding
diff_RLAGL_Vector_cond1_5436	chr2	46570506	46570705	+	8.73552	NA	Intergenic	Intergenic	874000	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
diff_RLAGL_Vector_cond1_5906	chr2	148114695	148114943	+	8.73316	NA	Intergenic	LTR33A_|LTR|ERVL	-67850	NM_010446	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding
diff_RLAGL_Vector_cond1_7122	chr4	89701675	89701935	+	8.73197	NA	Intergenic	L1_Rod|LINE|L1	13607	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding
diff_RLAGL_Vector_cond1_7001	chr4	57956327	57956669	+	8.73184	NA	promoter-TSS (NM_011660)	promoter-TSS (NM_011660)	-87	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding
diff_RLAGL_Vector_cond1_8660	chr6	132390723	132391285	+	8.73091	NA	Intergenic	RLTR13A|LTR|ERVK	-26869	NM_053251	114600	Mm.428480	NM_053251		Gm4736	EG114600|Mp4|Mp6	predicted gene 4736	protein-coding
diff_RLAGL_Vector_cond1_6313	chr3	55818189	55818449	+	8.73087	NA	intron (NM_030595, intron 39 of 57)	intron (NM_030595, intron 39 of 57)	-28786	NR_033592	71182	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo
diff_RLAGL_Vector_cond1_9168	chr7	105411962	105412187	+	8.73041	NA	Intergenic	Intergenic	7506	NM_001033317	233649	Mm.99556	NM_001033317	ENSMUSG00000030897	Cnga4	-	cyclic nucleotide gated channel alpha 4	protein-coding
diff_RLAGL_Vector_cond1_3302	chr14	102013168	102013462	+	8.72914	NA	Intergenic	Intergenic	283387	NM_201529	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding
diff_RLAGL_Vector_cond1_10330	chr9	117134029	117134331	+	8.72841	NA	intron (NM_001172122, intron 1 of 13)	intron (NM_001172122, intron 1 of 13)	118303	NM_001172124	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
diff_RLAGL_Vector_cond1_1144	chr10	78317412	78317661	+	8.72812	NA	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	22671	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA
diff_RLAGL_Vector_cond1_860	chr10	7390709	7391236	+	8.72745	NA	Intergenic	CpG	82505	NM_029975	77777	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_406	chr1	106876221	106876509	+	8.72566	NA	intron (NM_009257, intron 5 of 6)	intron (NM_009257, intron 5 of 6)	15185	NM_009257	20724	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding
diff_RLAGL_Vector_cond1_9910	chr9	11436543	11437127	+	8.72416	NA	Intergenic	Intergenic	-532060	NM_001170787	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding
diff_RLAGL_Vector_cond1_4412	chr17	37558987	37559557	+	8.72075	NA	Intergenic	MER44B|DNA|TcMar-Tigger	10179	NM_001013575	258096	Mm.159619	NM_001013575		Olfr112	4930580F03Rik|MOR218-4	olfactory receptor 112	protein-coding
diff_RLAGL_Vector_cond1_985	chr10	34418264	34418786	+	8.72062	NA	promoter-TSS (NM_176968)	promoter-TSS (NM_176968)	3	NM_176968	319638	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1752	chr11	75583575	75583775	+	8.71996	NA	Intergenic	Intergenic	-4404	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding
diff_RLAGL_Vector_cond1_1607	chr11	36036410	36036735	+	8.71988	NA	intron (NM_011856, intron 25 of 28)	intron (NM_011856, intron 25 of 28)	-56483	NM_170779	211652	Mm.31267	NM_170779		Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4026	chr16	52251019	52251243	+	8.71900	NA	3' UTR (NM_009655, exon 16 of 16)	3' UTR (NM_009655, exon 16 of 16)	201866	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_2894	chr13	99353174	99353429	+	8.71778	NA	intron (NM_173757, intron 2 of 10)	intron (NM_173757, intron 2 of 10)	8515	NM_173757	218506	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding
diff_RLAGL_Vector_cond1_268	chr1	73862665	73862968	+	8.71285	NA	non-coding (NR_045311, exon 2 of 9)	non-coding (NR_045311, exon 2 of 9)	1650	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA
diff_RLAGL_Vector_cond1_6909	chr4	32238387	32238726	+	8.71250	NA	Intergenic	CpG	-178879	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology 2	protein-coding
diff_RLAGL_Vector_cond1_2274	chr12	64917612	64918172	+	8.71156	NA	promoter-TSS (NM_001025605)	promoter-TSS (NM_001025605)	-19	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding
diff_RLAGL_Vector_cond1_564	chr1	150071588	150071949	+	8.71075	NA	Intergenic	MT2A|LTR|ERVL	-19566	NR_106112	102465760		NR_106112	ENSMUSG00000098906	Mir7652	Gm27932|mmu-mir-7652	microRNA 7652	ncRNA
diff_RLAGL_Vector_cond1_804	chr1	191397072	191397372	+	8.71065	NA	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-181	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding
diff_RLAGL_Vector_cond1_1812	chr11	87697193	87697558	+	8.70947	NA	intron (NM_172448, intron 2 of 9)	intron (NM_172448, intron 2 of 9)	-2149	NR_045139	68690	Mm.342009	NR_045139		1110028F11Rik	-	RIKEN cDNA 1110028F11 gene	ncRNA
diff_RLAGL_Vector_cond1_6555	chr3	117868622	117869074	+	8.70617	NA	promoter-TSS (NM_029655)	promoter-TSS (NM_029655)	88	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
diff_RLAGL_Vector_cond1_8009	chr5	132671076	132671354	+	8.70213	NA	Intergenic	PB1D7|SINE|Alu	-128872	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
diff_RLAGL_Vector_cond1_5908	chr2	148495522	148495850	+	8.70146	NA	Intergenic	Intergenic	-52151	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding
diff_RLAGL_Vector_cond1_6864	chr4	20676870	20677146	+	8.70001	NA	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	101660	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding
diff_RLAGL_Vector_cond1_8816	chr7	12478176	12478508	+	8.69703	NA	promoter-TSS (NM_026112)	promoter-TSS (NM_026112)	37	NM_001039951	67370	Mm.98929	NM_026112	ENSMUSG00000030386	Zfp606	2410022M24Rik|AW494727	zinc finger protein 606	protein-coding
diff_RLAGL_Vector_cond1_4293	chr17	17974912	17975169	+	8.69447	NA	Intergenic	RLTR9E|LTR|ERVK	4582	NM_008042	14294	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding
diff_RLAGL_Vector_cond1_8424	chr6	82774422	82774772	+	8.69428	NA	promoter-TSS (NM_013820)	promoter-TSS (NM_013820)	-143	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding
diff_RLAGL_Vector_cond1_4147	chr16	84621252	84621586	+	8.69131	NA	Intergenic	Intergenic	-58370	NR_040537	78023	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA
diff_RLAGL_Vector_cond1_9719	chr8	94660335	94660588	+	8.68733	NA	TTS (NM_026274)	TTS (NM_026274)	-6139	NM_024191	107566	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding
diff_RLAGL_Vector_cond1_4638	chr17	83222770	83223089	+	8.68672	NA	intron (NM_134117, intron 5 of 6)	intron (NM_134117, intron 5 of 6)	7646	NM_134117	106522	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding
diff_RLAGL_Vector_cond1_8982	chr7	51776036	51776281	+	8.68580	NA	Intergenic	Intergenic	86109	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding
diff_RLAGL_Vector_cond1_1632	chr11	46312193	46312463	+	8.68513	NA	promoter-TSS (NM_001252460)	promoter-TSS (NM_001252460)	30	NM_133769	76884	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_9499	chr8	44087800	44088097	+	8.68417	NA	Intergenic	Lx2B2|LINE|L1	-388457	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding
diff_RLAGL_Vector_cond1_1502	chr11	11685824	11686252	+	8.68305	NA	5' UTR (NM_001301868, exon 1 of 8)	5' UTR (NM_001301868, exon 1 of 8)	113	NM_001301868	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding
diff_RLAGL_Vector_cond1_5627	chr2	91832211	91832440	+	8.68154	NA	intron (NM_001080754, intron 12 of 18)	intron (NM_001080754, intron 12 of 18)	-89864	NM_007699	12672	Mm.330405	NM_007699		Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding
diff_RLAGL_Vector_cond1_5872	chr2	142933297	142933497	+	8.68071	NA	Intergenic	Lx8b|LINE|L1	30432	NR_131921	75053	Mm.72638	NR_131921		Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_7772	chr5	69678422	69678765	+	8.67970	NA	Intergenic	Intergenic	-86308	NM_001038015	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding
diff_RLAGL_Vector_cond1_2913	chr13	107831179	107831492	+	8.67820	NA	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	58729	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding
diff_RLAGL_Vector_cond1_7076	chr4	81252861	81253276	+	8.67670	NA	Intergenic	Intergenic	189747	NM_001305284	17475	Mm.153039	NM_010820	ENSMUSG00000028402	Mpdz	AI225843|B930003D11Rik|MUPP1	multiple PDZ domain protein	protein-coding
diff_RLAGL_Vector_cond1_7830	chr5	90030797	90031053	+	8.67554	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-147591	NM_001081401	330119	Mm.133062	NM_177872		Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding
diff_RLAGL_Vector_cond1_3584	chr15	51991651	51992023	+	8.67546	NA	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-77	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 homolog (S. pombe)	protein-coding
diff_RLAGL_Vector_cond1_7979	chr5	125394287	125394535	+	8.67221	NA	Intergenic	RMER17C|LTR|ERVK	-4394	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding
diff_RLAGL_Vector_cond1_4398	chr17	35342044	35342375	+	8.67113	NA	promoter-TSS (NM_010392)	promoter-TSS (NM_010392)	-124	NM_010392	15013	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|ENSMUSG00000079507|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding
diff_RLAGL_Vector_cond1_10611	chrX	164345372	164345621	+	8.67020	NA	intron (NM_027153, intron 7 of 9)	intron (NM_027153, intron 7 of 9)	-28026	NM_010216	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Figf	AI325264|VEGF-D|Vegfd	c-fos induced growth factor	protein-coding
diff_RLAGL_Vector_cond1_4134	chr16	79032642	79033088	+	8.66947	NA	intron (NM_008941, intron 13 of 27)	intron (NM_008941, intron 13 of 27)	58232	NM_008941	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
diff_RLAGL_Vector_cond1_2579	chr13	20147765	20148109	+	8.66414	NA	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	57430	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding
diff_RLAGL_Vector_cond1_2146	chr12	28804771	28805504	+	8.66264	NA	intron (NM_201357, intron 3 of 8)	intron (NM_201357, intron 3 of 8)	53309	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e	tumor suppressing subtransferable candidate 1	protein-coding
diff_RLAGL_Vector_cond1_7449	chr4	149485066	149485400	+	8.66171	NA	promoter-TSS (NM_026963)	promoter-TSS (NM_026963)	-91	NM_133435	66454	Mm.76062	NM_133435	ENSMUSG00000028992	Nmnat1	2610529L11Rik|5730441G13Rik|D4Cole1e|nmnat	nicotinamide nucleotide adenylyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_250	chr1	71413461	71413705	+	8.66029	NA	intron (NM_175210, intron 1 of 52)	intron (NM_175210, intron 1 of 52)	1327	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
diff_RLAGL_Vector_cond1_5250	chr2	4546855	4547338	+	8.65918	NA	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-12658	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding
diff_RLAGL_Vector_cond1_184	chr1	53352654	53352891	+	8.65842	NA	promoter-TSS (NM_133728)	promoter-TSS (NM_133728)	-20	NM_001290984	70396	Mm.285783	NM_133728	ENSMUSG00000026095	Asnsd1	2210409M21Rik	asparagine synthetase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_5416	chr2	38462239	38462454	+	8.65795	NA	Intergenic	Intergenic	-49351	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding
diff_RLAGL_Vector_cond1_6893	chr4	26474936	26475204	+	8.65724	NA	Intergenic	RLTR31D_MM|LTR|ERVK	-128418	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding
diff_RLAGL_Vector_cond1_7939	chr5	114558221	114558546	+	8.65350	NA	Intergenic	Intergenic	-9868	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding
diff_RLAGL_Vector_cond1_697	chr1	175692285	175693252	+	8.65125	NA	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-136	NM_010098	13603	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding
diff_RLAGL_Vector_cond1_343	chr1	88701957	88702234	+	8.65010	NA	promoter-TSS (NM_177305)	promoter-TSS (NM_177305)	96	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding
diff_RLAGL_Vector_cond1_2697	chr13	57040808	57041108	+	8.64951	NA	Intergenic	Intergenic	-145169	NM_001302372	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding
diff_RLAGL_Vector_cond1_5652	chr2	102113311	102113713	+	8.64904	NA	intron (NM_178886, intron 2 of 5)	intron (NM_178886, intron 2 of 5)	72948	NM_001290784	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_5217	chr19	55268188	55268463	+	8.64892	NA	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	14956	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding
diff_RLAGL_Vector_cond1_1118	chr10	71344799	71345043	+	8.64881	NA	promoter-TSS (NM_134007)	promoter-TSS (NM_134007)	-72	NM_134007	52637	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding
diff_RLAGL_Vector_cond1_2188	chr12	37108835	37109207	+	8.64773	NA	exon (NM_008584, exon 1 of 3)	exon (NM_008584, exon 1 of 3)	475	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_6676	chr3	145268129	145268513	+	8.64517	NA	Intergenic	LTR78|LTR|ERV1	-24151	NM_027770	71355	Mm.235570	NM_027770	ENSMUSG00000028197	Col24a1	5430404K19Rik	collagen, type XXIV, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_7982	chr5	127979978	127980207	+	8.64503	NA	intron (NM_172885, intron 4 of 8)	intron (NM_172885, intron 4 of 8)	347830	NM_177005	319804	Mm.237888	NM_177005		Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2037	chr12	4534310	4534538	+	8.64470	NA	Intergenic	LTR105_Mam|LTR|ERVL	-57242	NM_010881	17977	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|SRC-1|SRC1|bHLHe74	nuclear receptor coactivator 1	protein-coding
diff_RLAGL_Vector_cond1_9255	chr7	130335492	130335913	+	8.64454	NA	Intergenic	Intergenic	-68894	NM_201601	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding
diff_RLAGL_Vector_cond1_5804	chr2	134394331	134394616	+	8.64326	NA	Intergenic	Intergenic	159879	NM_010403	15112	Mm.26634	NM_010403	ENSMUSG00000027261	Hao1	GOX|Gox1|Hao-1	hydroxyacid oxidase 1, liver	protein-coding
diff_RLAGL_Vector_cond1_7954	chr5	118037815	118038064	+	8.63731	NA	intron (NM_021344, intron 1 of 7)	intron (NM_021344, intron 1 of 7)	10115	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding
diff_RLAGL_Vector_cond1_867	chr10	8772610	8772831	+	8.63619	NA	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	113350	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3493	chr15	25966131	25966797	+	8.63482	NA	intron (NM_001277315, intron 2 of 6)	intron (NM_001277315, intron 2 of 6)	-17902	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding
diff_RLAGL_Vector_cond1_4096	chr16	68826066	68826389	+	8.63366	NA	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	974154	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA
diff_RLAGL_Vector_cond1_3504	chr15	28025764	28026247	+	8.63175	NA	promoter-TSS (NM_001081302)	promoter-TSS (NM_001081302)	-157	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding
diff_RLAGL_Vector_cond1_8659	chr6	132318854	132319401	+	8.63111	NA	intron (NM_053251, intron 4 of 6)	RLTR13A3|LTR|ERVK	-4384	NM_001024705	381832	Mm.441627	NM_001024705	ENSMUSG00000107874	Prpmp5	MP5	proline-rich protein MP5	protein-coding
diff_RLAGL_Vector_cond1_1009	chr10	39899033	39899330	+	8.63089	NA	promoter-TSS (NR_033628)	promoter-TSS (NR_033628)	57	NR_033628	213332	Mm.484359	NR_033628		AA474331	-	expressed sequence AA474331	pseudo
diff_RLAGL_Vector_cond1_7932	chr5	113908610	113909048	+	8.63016	NA	promoter-TSS (NM_011779)	promoter-TSS (NM_011779)	-123	NM_011779	23790	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding
diff_RLAGL_Vector_cond1_9235	chr7	127008707	127009008	+	8.62881	NA	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	5737	NM_080638	78388	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding
diff_RLAGL_Vector_cond1_7453	chr4	150002290	150002520	+	8.62838	NA	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	831	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding
diff_RLAGL_Vector_cond1_872	chr10	9503626	9504131	+	8.62691	NA	Intergenic	Intergenic	171330	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_4887	chr18	54906784	54907126	+	8.62459	NA	intron (NM_175751, intron 3 of 9)	intron (NM_175751, intron 3 of 9)	83225	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
diff_RLAGL_Vector_cond1_1760	chr11	76763438	76763667	+	8.62105	NA	promoter-TSS (NM_016810)	promoter-TSS (NM_016810)	3	NM_016810	53334	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding
diff_RLAGL_Vector_cond1_8756	chr6	144652891	144653251	+	8.62006	NA	Intergenic	Intergenic	-19797	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA
diff_RLAGL_Vector_cond1_6678	chr3	145634076	145634611	+	8.61981	NA	Intergenic	Intergenic	15642	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding
diff_RLAGL_Vector_cond1_458	chr1	121430933	121431579	+	8.61812	NA	exon (NM_029955, exon 1 of 24)	exon (NM_029955, exon 1 of 24)	189	NM_029955	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding
diff_RLAGL_Vector_cond1_3334	chr14	105732250	105732796	+	8.61720	NA	Intergenic	Intergenic	-108753	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
diff_RLAGL_Vector_cond1_2388	chr12	100724989	100725505	+	8.61563	NA	promoter-TSS (NM_153587)	promoter-TSS (NM_153587)	-219	NM_153587	73086	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK	ribosomal protein S6 kinase, polypeptide 5	protein-coding
diff_RLAGL_Vector_cond1_1393	chr10	121740243	121740480	+	8.61278	NA	intron (NM_173022, intron 1 of 2)	intron (NM_173022, intron 1 of 2)	424	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding
diff_RLAGL_Vector_cond1_6878	chr4	23599940	23600378	+	8.61180	NA	Intergenic	Intergenic	-896303	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
diff_RLAGL_Vector_cond1_7043	chr4	71870019	71870228	+	8.61114	NA	Intergenic	Intergenic	330770	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
diff_RLAGL_Vector_cond1_235	chr1	67065462	67065850	+	8.61086	NA	Intergenic	Intergenic	-26784	NM_021295	14768	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding
diff_RLAGL_Vector_cond1_3024	chr14	18365713	18365927	+	8.60649	NA	Intergenic	Intergenic	-33976	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding
diff_RLAGL_Vector_cond1_5248	chr2	4237225	4237609	+	8.60540	NA	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	84554	NM_172475	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding
diff_RLAGL_Vector_cond1_3485	chr15	23036302	23036531	+	8.60376	NA	promoter-TSS (NM_001081299)	promoter-TSS (NM_001081299)	-47	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
diff_RLAGL_Vector_cond1_6359	chr3	65455923	65456265	+	8.60340	NA	Intergenic	Intergenic	-63541	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding
diff_RLAGL_Vector_cond1_2926	chr13	110665212	110665413	+	8.60320	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-238187	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA
diff_RLAGL_Vector_cond1_6598	chr3	129050026	129050631	+	8.60274	NA	Intergenic	Intergenic	-149550	NM_001042504	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_246	chr1	71102868	71103335	+	8.60248	NA	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-129	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding
diff_RLAGL_Vector_cond1_3564	chr15	46489098	46489344	+	8.60098	NA	intron (NR_040451, intron 2 of 8)	intron (NR_040451, intron 2 of 8)	6958	NR_040451	74726	Mm.78172	NR_040451		4930523O13Rik	4921524H24Rik	RIKEN cDNA 4930523O13 gene	ncRNA
diff_RLAGL_Vector_cond1_230	chr1	66895734	66896022	+	8.60018	NA	Intergenic	Intergenic	-32569	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding
diff_RLAGL_Vector_cond1_5532	chr2	66409884	66410300	+	8.59982	NA	intron (NM_001313997, intron 1 of 26)	intron (NM_001313997, intron 1 of 26)	30745	NM_001313997	20265	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding
diff_RLAGL_Vector_cond1_7371	chr4	138921944	138922237	+	8.59861	NA	Intergenic	Intergenic	-8143	NM_028453	73162	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_22	chr1	7397624	7398259	+	8.59649	NA	Intergenic	CpG	309021	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1342	chr10	112163243	112163452	+	8.59648	NA	promoter-TSS (NM_001310675)	promoter-TSS (NM_001310675)	-274	NM_001310675	353025	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding
diff_RLAGL_Vector_cond1_9825	chr8	120449677	120449950	+	8.59485	NA	Intergenic	Intergenic	-39053	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1	protein-coding
diff_RLAGL_Vector_cond1_504	chr1	135227376	135227711	+	8.59406	NA	Intergenic	Intergenic	30929	NM_007921	13710	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding
diff_RLAGL_Vector_cond1_10514	chrX	107816203	107816500	+	8.59327	NA	promoter-TSS (NM_001163104)	promoter-TSS (NM_001163104)	-17	NM_025921	67028	Mm.37274	NM_025921	ENSMUSG00000031242	2610002M06Rik	8430408J07Rik|AI876413|Chmp1b2	RIKEN cDNA 2610002M06 gene	protein-coding
diff_RLAGL_Vector_cond1_8528	chr6	106804936	106805205	+	8.59326	NA	Intergenic	Intergenic	-4983	NM_175357	58799	Mm.290085	NM_021449		Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding
diff_RLAGL_Vector_cond1_9608	chr8	70760831	70761258	+	8.59307	NA	promoter-TSS (NM_183170)	promoter-TSS (NM_183170)	-123	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_3447	chr15	9071026	9071295	+	8.58961	NA	promoter-TSS (NM_001085410)	promoter-TSS (NM_001085410)	-100	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_2936	chr13	113000634	113000891	+	8.58932	NA	TTS (NM_001037914)	TTS (NM_001037914)	6894	NM_001037914	622408	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding
diff_RLAGL_Vector_cond1_10524	chrX	111463502	111463811	+	8.58826	NA	intron (NM_025949, intron 2 of 24)	intron (NM_025949, intron 2 of 24)	74303	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding
diff_RLAGL_Vector_cond1_5074	chr19	8997623	8998017	+	8.58808	NA	intron (NM_009643, intron 1 of 4)	intron (NM_009643, intron 1 of 4)	8536	NR_104460	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding
diff_RLAGL_Vector_cond1_6368	chr3	67731949	67732212	+	8.58558	NA	Intergenic	Intergenic	149312	NM_025813	66868	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_5587	chr2	83625326	83625528	+	8.58542	NA	Intergenic	Intergenic	-19151	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
diff_RLAGL_Vector_cond1_917	chr10	21686246	21686459	+	8.58168	NA	Intergenic	Intergenic	-4493	NR_045843	432436	Mm.244553	NM_001004162		Gm5420	EG432436	predicted gene 5420	ncRNA
diff_RLAGL_Vector_cond1_4178	chr16	88649139	88649384	+	8.58101	NA	Intergenic	Intergenic	-1465	NM_027105	69533	Mm.30967	NM_027105	ENSMUSG00000071471	Krtap26-1	2310002B14Rik|AI507462	keratin associated protein 26-1	protein-coding
diff_RLAGL_Vector_cond1_9888	chr9	5356843	5357159	+	8.57610	NA	intron (NM_009808, intron 8 of 10)	intron (NM_009808, intron 8 of 10)	11525	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding
diff_RLAGL_Vector_cond1_2351	chr12	87147553	87147756	+	8.57595	NA	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-53	NM_010363	14874	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding
diff_RLAGL_Vector_cond1_9000	chr7	59228158	59229123	+	8.57397	NA	promoter-TSS (NM_173010)	promoter-TSS (NM_173010)	-110	NM_173010	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding
diff_RLAGL_Vector_cond1_4042	chr16	56396539	56396801	+	8.57233	NA	Intergenic	Intergenic	-81176	NM_001014422	320712	Mm.209236	NM_178790	ENSMUSG00000035258	Abi3bp	5033411B22Rik|AI506287|BG172926|D930038M13Rik|TARSH|eratin	ABI gene family, member 3 (NESH) binding protein	protein-coding
diff_RLAGL_Vector_cond1_409	chr1	107657813	107658207	+	8.57133	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	68004	NM_001159748	20725	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding
diff_RLAGL_Vector_cond1_3850	chr16	5368932	5369293	+	8.57091	NA	Intergenic	Intergenic	-113156	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding
diff_RLAGL_Vector_cond1_8379	chr6	65671414	65671822	+	8.56946	NA	promoter-TSS (NM_172399)	promoter-TSS (NM_172399)	7	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding
diff_RLAGL_Vector_cond1_8485	chr6	92241314	92241527	+	8.56872	NA	TTS (NM_009426)	TTS (NM_009426)	3230	NM_009426	22044	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding
diff_RLAGL_Vector_cond1_3509	chr15	30172466	30172838	+	8.56557	NA	promoter-TSS (NM_008729)	promoter-TSS (NM_008729)	59	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding
diff_RLAGL_Vector_cond1_2308	chr12	73286590	73287126	+	8.56468	NA	promoter-TSS (NM_029580)	promoter-TSS (NM_029580)	10	NM_001037717	625098	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding
diff_RLAGL_Vector_cond1_7825	chr5	88237680	88237917	+	8.56306	NA	Intergenic	Intergenic	-31121	NM_001110779	665615	Mm.366701	NM_001110779	ENSMUSG00000090302	Gm7714	EG665615	predicted gene 7714	protein-coding
diff_RLAGL_Vector_cond1_10228	chr9	94021347	94021872	+	8.56272	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	516472	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
diff_RLAGL_Vector_cond1_7021	chr4	63172340	63172627	+	8.56223	NA	promoter-TSS (NM_010616)	promoter-TSS (NM_010616)	-352	NM_010616	16552	Mm.216057	NM_010616	ENSMUSG00000028357	Kif12	-	kinesin family member 12	protein-coding
diff_RLAGL_Vector_cond1_6796	chr4	5048486	5048753	+	8.56143	NA	Intergenic	MMERVK9E_I-int|LTR|ERVK	-255313	NM_177730	242291	Mm.218889	NM_177730		Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2221	chr12	50115952	50116378	+	8.56091	NA	Intergenic	Intergenic	533058	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
diff_RLAGL_Vector_cond1_6842	chr4	14863946	14864405	+	8.56062	NA	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	-44	NM_028264	72519	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360	transmembrane protein 55A	protein-coding
diff_RLAGL_Vector_cond1_9560	chr8	57602083	57602403	+	8.55991	NA	intron (NM_144731, intron 1 of 11)	intron (NM_144731, intron 1 of 11)	-49510	NR_040698	100502619	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA
diff_RLAGL_Vector_cond1_815	chr1	192830430	192830680	+	8.55967	NA	Intergenic	Intergenic	-11150	NR_040468	73455	Mm.414869	NR_040468		1700065J18Rik	-	RIKEN cDNA 1700065J18 gene	ncRNA
diff_RLAGL_Vector_cond1_2275	chr12	64951824	64952038	+	8.55871	NA	intron (NM_025707, intron 2 of 4)	L1M5|LINE|L1	13605	NM_025707	66689	Mm.248678	NM_025707	ENSMUSG00000020948	Klhl28	2810440N09Rik|4122402F11Rik|4931401E10Rik|Btbd5	kelch-like 28	protein-coding
diff_RLAGL_Vector_cond1_7427	chr4	145487608	145487865	+	8.55514	NA	Intergenic	Intergenic	23526	NR_002888	545700	Mm.389595	NR_002888	ENSMUSG00000052912	Smarca5-ps	9230115A19Rik|OTTMUSG00000011029	SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene	pseudo
diff_RLAGL_Vector_cond1_7522	chr5	5379874	5380377	+	8.55477	NA	exon (NM_011074, exon 1 of 15)	exon (NM_011074, exon 1 of 15)	126	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding
diff_RLAGL_Vector_cond1_7569	chr5	20840498	20840708	+	8.55322	NA	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	41521	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_507	chr1	135535333	135535626	+	8.55311	NA	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	49876	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding
diff_RLAGL_Vector_cond1_2990	chr14	7954037	7954497	+	8.55304	NA	Intergenic	Intergenic	39915	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding
diff_RLAGL_Vector_cond1_7807	chr5	81317524	81317727	+	8.55189	NA	intron (NM_198702, intron 4 of 27)	intron (NM_198702, intron 4 of 27)	296032	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
diff_RLAGL_Vector_cond1_2716	chr13	60358820	60359035	+	8.55016	NA	Intergenic	Intergenic	153456	NR_036449	100503759	Mm.38101	NM_177810		Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA
diff_RLAGL_Vector_cond1_7379	chr4	139512749	139512972	+	8.55004	NA	Intergenic	RLTR49|LTR|ERVK	-17688	NM_183148	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding
diff_RLAGL_Vector_cond1_1754	chr11	75926591	75927173	+	8.54980	NA	promoter-TSS (NM_001291159)	promoter-TSS (NM_001291159)	-991	NM_001291159	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding
diff_RLAGL_Vector_cond1_8011	chr5	133173260	133173570	+	8.54831	NA	Intergenic	Intergenic	-631072	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
diff_RLAGL_Vector_cond1_709	chr1	177110891	177111215	+	8.54779	NA	intron (NM_011785, intron 2 of 12)	intron (NM_011785, intron 2 of 12)	137714	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
diff_RLAGL_Vector_cond1_1284	chr10	102373921	102374446	+	8.54478	NA	promoter-TSS (NM_026243)	promoter-TSS (NM_026243)	-254	NM_026243	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
diff_RLAGL_Vector_cond1_5616	chr2	88007560	88008389	+	8.54433	NA	Intergenic	Intergenic	-1198	NM_146649	258643	Mm.377610	NM_146649	ENSMUSG00000075141	Olfr1160	MOR173-1	olfactory receptor 1160	protein-coding
diff_RLAGL_Vector_cond1_8839	chr7	16405907	16406270	+	8.54354	NA	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	4892	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding
diff_RLAGL_Vector_cond1_7548	chr5	17125317	17125605	+	8.54192	NA	Intergenic	Intergenic	-350661	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding
diff_RLAGL_Vector_cond1_7378	chr4	139509076	139509411	+	8.54160	NA	Intergenic	Intergenic	-21305	NM_183148	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding
diff_RLAGL_Vector_cond1_8162	chr6	8509095	8509486	+	8.54146	NA	promoter-TSS (NM_133236)	promoter-TSS (NM_133236)	-129	NR_040452	320312	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA
diff_RLAGL_Vector_cond1_9388	chr8	14494918	14495126	+	8.53726	NA	intron (NM_001145965, intron 2 of 14)	intron (NM_001145965, intron 2 of 14)	-393514	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding
diff_RLAGL_Vector_cond1_3407	chr15	3270497	3271113	+	8.53694	NA	promoter-TSS (NM_001042614)	promoter-TSS (NM_001042614)	-6	NM_001042614	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Sepp1	AU018766|D15Ucla1|Se-P|selp	selenoprotein P, plasma, 1	protein-coding
diff_RLAGL_Vector_cond1_7727	chr5	52431302	52431722	+	8.53651	NA	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	40031	NM_001256059	100503884	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding
diff_RLAGL_Vector_cond1_1384	chr10	120979318	120979700	+	8.53557	NA	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-179	NM_001081193	380664	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_10146	chr9	69467448	69467902	+	8.53507	NA	intron (NM_007585, intron 3 of 12)	intron (NM_007585, intron 3 of 12)	10731	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA
diff_RLAGL_Vector_cond1_4768	chr18	20188219	20188633	+	8.53216	NA	Intergenic	Intergenic	-58914	NM_181680	211924	Mm.391118	NM_181680		Dsg1c	9330156N18|Dsg1gamma|Dsg6|dsg1g	desmoglein 1 gamma	protein-coding
diff_RLAGL_Vector_cond1_7826	chr5	88370634	88371208	+	8.53076	NA	Intergenic	Intergenic	-5187	NM_027793	71421	Mm.79700	NM_027793	ENSMUSG00000029282	Amtn	5430427O21Rik	amelotin	protein-coding
diff_RLAGL_Vector_cond1_1830	chr11	93457828	93458167	+	8.52878	NA	intron (NM_028296, intron 3 of 8)	intron (NM_028296, intron 3 of 8)	358707	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding
diff_RLAGL_Vector_cond1_3573	chr15	48229434	48229765	+	8.52865	NA	intron (NM_001081391, intron 10 of 70)	intron (NM_001081391, intron 10 of 70)	562390	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
diff_RLAGL_Vector_cond1_1352	chr10	115384641	115384912	+	8.52654	NA	promoter-TSS (NM_025780)	promoter-TSS (NM_025780)	-183	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding
diff_RLAGL_Vector_cond1_6618	chr3	132037489	132038206	+	8.52590	NA	Intergenic	Intergenic	-47445	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf homolog 2 (Xenopus laevis)	protein-coding
diff_RLAGL_Vector_cond1_2393	chr12	102282916	102283243	+	8.52498	NA	promoter-TSS (NM_177620)	promoter-TSS (NM_177620)	5	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding
diff_RLAGL_Vector_cond1_1492	chr11	9587306	9587547	+	8.52422	NA	intron (NM_178259, intron 54 of 61)	intron (NM_178259, intron 54 of 61)	395484	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
diff_RLAGL_Vector_cond1_4132	chr16	78930823	78931407	+	8.52364	NA	5' UTR (NM_139134, exon 1 of 6)	5' UTR (NM_139134, exon 1 of 6)	167	NM_139134	246048	Mm.77895	NM_139134	ENSMUSG00000022860	Chodl	3110074E07Rik|MT75|PRED12	chondrolectin	protein-coding
diff_RLAGL_Vector_cond1_6954	chr4	46545671	46545898	+	8.52000	NA	intron (NM_001164804, intron 5 of 11)	intron (NM_001164804, intron 5 of 11)	-9643	NM_029077	74735	Mm.240252	NM_029077		Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding
diff_RLAGL_Vector_cond1_3593	chr15	53902434	53902846	+	8.51806	NA	promoter-TSS (NM_177225)	promoter-TSS (NM_177225)	-204	NM_177225	320679	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding
diff_RLAGL_Vector_cond1_3126	chr14	50741686	50741939	+	8.51736	NA	intron (NM_020288, intron 1 of 1)	intron (NM_020288, intron 1 of 1)	2512	NM_020288	56858	Mm.103732	NM_020288	ENSMUSG00000059069	Olfr749	MOR106-1|ORL461|Ors1	olfactory receptor 749	protein-coding
diff_RLAGL_Vector_cond1_1926	chr11	109584947	109585202	+	8.51550	NA	intron (NM_145940, intron 5 of 12)	intron (NM_145940, intron 5 of 12)	26315	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding
diff_RLAGL_Vector_cond1_1408	chr10	125389541	125389903	+	8.51531	NA	Intergenic	Intergenic	-61187	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
diff_RLAGL_Vector_cond1_66	chr1	17523135	17523394	+	8.51521	NA	Intergenic	PB1D9|SINE|Alu	-78637	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding
diff_RLAGL_Vector_cond1_9093	chr7	81074679	81074907	+	8.51314	NA	intron (NM_054085, intron 3 of 13)	intron (NM_054085, intron 3 of 13)	17193	NM_054085	116904	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding
diff_RLAGL_Vector_cond1_9787	chr8	113859928	113860184	+	8.51305	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-11217	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding
diff_RLAGL_Vector_cond1_8509	chr6	98842966	98843316	+	8.51187	NA	Intergenic	MER5A|DNA|hAT-Charlie	185157	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
diff_RLAGL_Vector_cond1_10180	chr9	82829671	82830383	+	8.51173	NA	5' UTR (NM_022986, exon 1 of 4)	5' UTR (NM_022986, exon 1 of 4)	221	NM_022986	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_2469	chr12	113987678	113987902	+	8.51167	NA	Intergenic	Intergenic	443882	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding
diff_RLAGL_Vector_cond1_9611	chr8	70841156	70841355	+	8.51128	NA	TTS (NM_032397)	TTS (NM_032397)	-1535	NM_027560	70807	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_7225	chr4	114627689	114628010	+	8.51104	NA	Intergenic	Intergenic	-193871	NR_033617	433746	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	OTTMUSG00000008584	predicted gene 12830	ncRNA
diff_RLAGL_Vector_cond1_2650	chr13	41458748	41459023	+	8.51074	NA	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	28475	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding
diff_RLAGL_Vector_cond1_2975	chr13	119333998	119334276	+	8.50795	NA	TTS (NM_008710)	TTS (NM_008710)	74874	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding
diff_RLAGL_Vector_cond1_3543	chr15	41775689	41776101	+	8.50572	NA	intron (NM_001130166, intron 3 of 16)	intron (NM_001130166, intron 3 of 16)	-13139	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
diff_RLAGL_Vector_cond1_9948	chr9	20651734	20652051	+	8.50472	NA	promoter-TSS (NM_023371)	promoter-TSS (NM_023371)	-238	NM_023371	23988	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding
diff_RLAGL_Vector_cond1_3366	chr14	118820177	118820394	+	8.50370	NA	intron (NM_023878, intron 1 of 4)	intron (NM_023878, intron 1 of 4)	32414	NM_023878	58187	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding
diff_RLAGL_Vector_cond1_6451	chr3	91302029	91302543	+	8.50268	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-211481	NM_001101461	229550	Mm.98335	NM_001101461	ENSMUSG00000091175	9130204L05Rik	Gm127	RIKEN cDNA 9130204L05 gene	protein-coding
diff_RLAGL_Vector_cond1_7927	chr5	113165035	113165349	+	8.50203	NA	Intergenic	Intergenic	-1879	NM_172884	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding
diff_RLAGL_Vector_cond1_6667	chr3	143822929	143823436	+	8.50193	NA	Intergenic	Intergenic	-111039	NR_040405	621809	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA
diff_RLAGL_Vector_cond1_5165	chr19	42231089	42231462	+	8.50111	NA	Intergenic	Intergenic	-16303	NM_001141983	71146	Mm.329851	NM_027694	ENSMUSG00000042532	Golga7b	4933417O08Rik|AI839934	golgi autoantigen, golgin subfamily a, 7B	protein-coding
diff_RLAGL_Vector_cond1_3164	chr14	61439870	61440171	+	8.49884	NA	promoter-TSS (NM_008466)	promoter-TSS (NM_008466)	-73	NM_008466	16648	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding
diff_RLAGL_Vector_cond1_2953	chr13	116618972	116619688	+	8.49799	NA	Intergenic	Intergenic	-309642	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding
diff_RLAGL_Vector_cond1_4771	chr18	20457539	20457845	+	8.49644	NA	intron (NM_181564, intron 9 of 15)	intron (NM_181564, intron 9 of 15)	21517	NM_181564	16769	Mm.358619	NM_181564	ENSMUSG00000001804	Dsg4	CDHF13|lah	desmoglein 4	protein-coding
diff_RLAGL_Vector_cond1_7645	chr5	36989069	36989468	+	8.49390	NA	promoter-TSS (NM_011716)	promoter-TSS (NM_011716)	-286	NM_011716	22393	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	Wolfram syndrome 1 homolog (human)	protein-coding
diff_RLAGL_Vector_cond1_8717	chr6	140081601	140081819	+	8.49363	NA	Intergenic	RMER1A|Other|Other	40185	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding
diff_RLAGL_Vector_cond1_2407	chr12	103504287	103504722	+	8.49259	NA	Intergenic	Intergenic	-28061	NM_028980	74521	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding
diff_RLAGL_Vector_cond1_9039	chr7	68749138	68749624	+	8.49041	NA	promoter-TSS (NM_001042592)	promoter-TSS (NM_001042592)	-143	NM_001042592	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_2514	chr13	4038034	4038315	+	8.48855	NA	Intergenic	Intergenic	-21417	NM_134072	105387	Mm.26838	NM_134072	ENSMUSG00000033715	Akr1c14	9030611N15Rik|AW557061	aldo-keto reductase family 1, member C14	protein-coding
diff_RLAGL_Vector_cond1_8866	chr7	24608157	24608415	+	8.48841	NA	intron (NM_023154, intron 6 of 7)	intron (NM_023154, intron 6 of 7)	-3042	NM_001102613	232970	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|ENSMUSG00000061511|Gm10102	pleckstrin homology-like domain, family B, member 3	protein-coding
diff_RLAGL_Vector_cond1_5874	chr2	143545569	143546146	+	8.48806	NA	promoter-TSS (NM_008792)	promoter-TSS (NM_008792)	-276	NM_008792	18549	Mm.294493	NM_008792	ENSMUSG00000027419	Pcsk2	6330411F23Rik|AI839700|Nec-2|Nec2|PC2|Phpp-2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding
diff_RLAGL_Vector_cond1_2092	chr12	14286725	14286946	+	8.48741	NA	Intergenic	Intergenic	25301	NR_045003	791361	Mm.217963	NR_045003		Gm16497	ENSMUSG00000066623	predicted gene 16497	ncRNA
diff_RLAGL_Vector_cond1_4503	chr17	56206534	56207026	+	8.48721	NA	exon (NM_172624, exon 4 of 21)	exon (NM_172624, exon 4 of 21)	12109	NM_172624	224897	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding
diff_RLAGL_Vector_cond1_2935	chr13	112651194	112651397	+	8.48670	NA	intron (NM_010029, intron 2 of 20)	intron (NM_010029, intron 2 of 20)	1015	NM_001145885	13206	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding
diff_RLAGL_Vector_cond1_6727	chr3	152051966	152052242	+	8.48534	NA	Intergenic	Intergenic	113796	NM_016867	54120	Mm.97	NM_016867		Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding
diff_RLAGL_Vector_cond1_3423	chr15	5196006	5196443	+	8.48439	NA	intron (NM_026213, intron 2 of 4)	intron (NM_026213, intron 2 of 4)	10664	NM_026213	67515	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding
diff_RLAGL_Vector_cond1_1405	chr10	125328361	125329067	+	8.48379	NA	promoter-TSS (NM_011391)	promoter-TSS (NM_011391)	-179	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
diff_RLAGL_Vector_cond1_3299	chr14	101640642	101640885	+	8.48264	NA	promoter-TSS (NM_001168592)	promoter-TSS (NM_001168592)	-292	NM_001033132	66200	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_9426	chr8	24457394	24457935	+	8.48261	NA	Intergenic	Intergenic	-18718	NM_026931	69068	Mm.25775	NM_026931		1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding
diff_RLAGL_Vector_cond1_9824	chr8	120445300	120445501	+	8.48208	NA	Intergenic	Intergenic	-43466	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1	protein-coding
diff_RLAGL_Vector_cond1_3344	chr14	109877055	109877584	+	8.48070	NA	Intergenic	RLTR22_Mur|LTR|ERVK	417089	NR_039542	100628607		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA
diff_RLAGL_Vector_cond1_4299	chr17	20109851	20110212	+	8.47827	NA	Intergenic	Lx2B2|LINE|L1	-61826	NM_001104566	22313	Mm.379039	NM_001104566	ENSMUSG00000090315	Vmn2r104	V2r7	vomeronasal 2, receptor 104	protein-coding
diff_RLAGL_Vector_cond1_6027	chr2	167421580	167421794	+	8.47760	NA	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-23	NM_148929	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding
diff_RLAGL_Vector_cond1_9969	chr9	24503067	24503588	+	8.47649	NA	promoter-TSS (NM_172920)	promoter-TSS (NM_172920)	-187	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_5112	chr19	21104418	21104979	+	8.47346	NA	promoter-TSS (NR_126458)	promoter-TSS (NR_126458)	-12	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA
diff_RLAGL_Vector_cond1_10232	chr9	94456100	94456616	+	8.47341	NA	Intergenic	Intergenic	81723	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
diff_RLAGL_Vector_cond1_5728	chr2	117823800	117824002	+	8.46904	NA	intron (NR_040631, intron 1 of 5)	intron (NR_040631, intron 1 of 5)	1973	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA
diff_RLAGL_Vector_cond1_2524	chr13	5367081	5367312	+	8.46820	NA	Intergenic	Lx8b|LINE|L1	490896	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
diff_RLAGL_Vector_cond1_5983	chr2	158767857	158768075	+	8.46798	NA	promoter-TSS (NM_027975)	promoter-TSS (NM_027975)	-133	NM_027975	71878	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding
diff_RLAGL_Vector_cond1_10596	chrX	160390413	160390845	+	8.46770	NA	promoter-TSS (NM_001079857)	promoter-TSS (NM_001079857)	-61	NM_001290445	237175	Mm.213016	NM_178712	ENSMUSG00000031298	Adgrg2	AW212196|B830041D06Rik|Gpr64|Me6	adhesion G protein-coupled receptor G2	protein-coding
diff_RLAGL_Vector_cond1_4532	chr17	63500483	63500761	+	8.46425	NA	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	-42	NM_015794	50758	Mm.136366	NM_015794		Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
diff_RLAGL_Vector_cond1_8530	chr6	107473406	107473688	+	8.46388	NA	Intergenic	MIRb|SINE|MIR	-56179	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding
diff_RLAGL_Vector_cond1_8387	chr6	67037337	67037561	+	8.46176	NA	promoter-TSS (NM_007836)	promoter-TSS (NM_007836)	-42	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding
diff_RLAGL_Vector_cond1_3844	chr16	4541955	4542154	+	8.45868	NA	Intergenic	Intergenic	17666	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding
diff_RLAGL_Vector_cond1_2624	chr13	31547567	31547919	+	8.45862	NA	Intergenic	Intergenic	-10427	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding
diff_RLAGL_Vector_cond1_8547	chr6	112197507	112197852	+	8.45785	NA	Intergenic	LTR41|LTR|ERVL	-13029	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA
diff_RLAGL_Vector_cond1_10561	chrX	139808167	139808389	+	8.45783	NA	intron (NM_016675, intron 1 of 1)	intron (NM_016675, intron 1 of 1)	7470	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding
diff_RLAGL_Vector_cond1_858	chr10	7198246	7198540	+	8.45465	NA	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	13844	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding
diff_RLAGL_Vector_cond1_8542	chr6	108828309	108828720	+	8.45185	NA	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-127	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
diff_RLAGL_Vector_cond1_3163	chr14	61172559	61173155	+	8.45101	NA	intron (NM_172809, intron 2 of 9)	CpG	34400	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding
diff_RLAGL_Vector_cond1_6276	chr3	50262112	50262361	+	8.45064	NA	Intergenic	Intergenic	181377	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
diff_RLAGL_Vector_cond1_3194	chr14	68338498	68338833	+	8.45062	NA	Intergenic	Intergenic	195024	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding
diff_RLAGL_Vector_cond1_6388	chr3	72976670	72976971	+	8.45041	NA	Intergenic	RMER12|LTR|ERVK	-9954	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding
diff_RLAGL_Vector_cond1_138	chr1	38146098	38146315	+	8.45003	NA	Intergenic	Intergenic	-16544	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_7196	chr4	109201878	109202434	+	8.44960	NA	exon (NM_133885, exon 1 of 23)	exon (NM_133885, exon 1 of 23)	116	NM_133885	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding
diff_RLAGL_Vector_cond1_1165	chr10	80436423	80436631	+	8.44896	NA	Intergenic	ZP3AR|Satellite|Satellite	-2874	NM_001164147	21423	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding
diff_RLAGL_Vector_cond1_1154	chr10	79822587	79822798	+	8.44803	NA	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	1671	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding
diff_RLAGL_Vector_cond1_5406	chr2	35616955	35617256	+	8.44592	NA	intron (NM_001290637, intron 1 of 16)	intron (NM_001290637, intron 1 of 16)	-4876	NM_001290641	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_9495	chr8	41782164	41782489	+	8.44555	NA	Intergenic	RMER15|LTR|ERVL	-44941	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA
diff_RLAGL_Vector_cond1_5087	chr19	11996127	11996401	+	8.44521	NA	Intergenic	Intergenic	30420	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding
diff_RLAGL_Vector_cond1_5235	chr19	60968027	60968243	+	8.44412	NA	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	78386	NM_018869	14773	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding
diff_RLAGL_Vector_cond1_5242	chr2	3341571	3341770	+	8.44399	NA	TTS (NM_145921)	TTS (NM_145921)	5502	NM_030063	78245	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_72	chr1	20820277	20820579	+	8.44309	NA	promoter-TSS (NM_008563)	promoter-TSS (NM_008563)	-215	NM_008563	17215	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|p1.m	minichromosome maintenance deficient 3 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1320	chr10	107941545	107941825	+	8.44189	NA	Intergenic	Intergenic	-4960	NR_131147	628877	Mm.363120	NR_131147		Gm29685	-	predicted gene, 29685	ncRNA
diff_RLAGL_Vector_cond1_10244	chr9	97780102	97780571	+	8.44161	NA	intron (NM_022319, intron 2 of 17)	MIRb|SINE|MIR	-223084	NR_110443	66737	Mm.445908	NR_110443	ENSMUSG00000090255	4921534H16Rik	-	RIKEN cDNA 4921534H16 gene	ncRNA
diff_RLAGL_Vector_cond1_8373	chr6	64763960	64764187	+	8.43793	NA	Intergenic	Intergenic	34927	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_287	chr1	77206573	77206900	+	8.43620	NA	Intergenic	MIR3|SINE|MIR	290032	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA
diff_RLAGL_Vector_cond1_5748	chr2	121456947	121457190	+	8.43448	NA	promoter-TSS (NM_001025371)	promoter-TSS (NM_001025371)	-20	NM_026318	67693	Mm.330525	NM_026318		Hypk	2310003F16Rik|HSPC136	huntingtin interacting protein K	protein-coding
diff_RLAGL_Vector_cond1_5360	chr2	26482116	26482399	+	8.43399	NA	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-12138	NR_105962	102465602		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA
diff_RLAGL_Vector_cond1_191	chr1	55405706	55406136	+	8.43223	NA	promoter-TSS (NM_001114663)	promoter-TSS (NM_001114663)	-25	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding
diff_RLAGL_Vector_cond1_6523	chr3	107517843	107518055	+	8.43151	NA	promoter-TSS (NM_001293689)	promoter-TSS (NM_001293689)	69	NM_172271	229706	Mm.212867	NM_172271	ENSMUSG00000027894	Slc6a17	D130012J15Rik|Ntt4	solute carrier family 6 (neurotransmitter transporter), member 17	protein-coding
diff_RLAGL_Vector_cond1_2484	chr12	117627439	117627696	+	8.42983	NA	intron (NM_175930, intron 9 of 27)	intron (NM_175930, intron 9 of 27)	111088	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
diff_RLAGL_Vector_cond1_7386	chr4	140779729	140780242	+	8.42676	NA	Intergenic	Intergenic	-5782	NM_011061	18602	Mm.250358	NM_011061	ENSMUSG00000025330	Padi4	Pad4|Pdi4	peptidyl arginine deiminase, type IV	protein-coding
diff_RLAGL_Vector_cond1_9128	chr7	92258853	92259095	+	8.42629	NA	intron (NM_001243047, intron 1 of 10)	intron (NM_001243047, intron 1 of 10)	24004	NM_001243047	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7442	chr4	148448210	148448622	+	8.42469	NA	promoter-TSS (NM_020009)	promoter-TSS (NM_020009)	-166	NM_020009	56717	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin (serine/threonine kinase)	protein-coding
diff_RLAGL_Vector_cond1_9240	chr7	127512489	127512769	+	8.42455	NA	non-coding (NR_024331, exon 1 of 1)	non-coding (NR_024331, exon 1 of 1)	240	NR_024331	629159	Mm.256720	NR_024331	ENSMUSG00000101225	1700008J07Rik	AW048743	RIKEN cDNA 1700008J07 gene	ncRNA
diff_RLAGL_Vector_cond1_3259	chr14	86501034	86501279	+	8.42426	NA	Intergenic	Intergenic	255186	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
diff_RLAGL_Vector_cond1_8580	chr6	117032103	117032604	+	8.42296	NA	Intergenic	Intergenic	-136182	NM_001012477	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding
diff_RLAGL_Vector_cond1_6397	chr3	75337480	75337773	+	8.42038	NA	Intergenic	Intergenic	-67548	NM_026460	67931	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding
diff_RLAGL_Vector_cond1_6564	chr3	121171604	121171851	+	8.41963	NA	promoter-TSS (NM_025637)	promoter-TSS (NM_025637)	-32	NM_025637	66568	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_10167	chr9	77917133	77917454	+	8.41943	NA	promoter-TSS (NM_134255)	promoter-TSS (NM_134255)	-72	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding
diff_RLAGL_Vector_cond1_8738	chr6	142814023	142814635	+	8.41767	NA	promoter-TSS (NR_045707)	promoter-TSS (NR_045707)	98	NR_045707	665037	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037|ENSMUSG00000072683	predicted gene 7457	ncRNA
diff_RLAGL_Vector_cond1_2564	chr13	14612871	14613586	+	8.41710	NA	promoter-TSS (NM_008944)	promoter-TSS (NM_008944)	-14	NM_008944	19166	Mm.252255	NM_008944	ENSMUSG00000015671	Psma2	Lmpc3	proteasome (prosome, macropain) subunit, alpha type 2	protein-coding
diff_RLAGL_Vector_cond1_257	chr1	72225850	72226238	+	8.41584	NA	Intergenic	CpG	-13737	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding
diff_RLAGL_Vector_cond1_1312	chr10	107353469	107353815	+	8.41487	NA	intron (NM_001039354, intron 2 of 5)	RLTR12B|LTR|ERVK	81248	NM_001284329	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_5625	chr2	91264889	91265242	+	8.41411	NA	promoter-TSS (NM_023854)	promoter-TSS (NM_023854)	-50	NM_023854	77038	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding
diff_RLAGL_Vector_cond1_4310	chr17	21909523	21909760	+	8.41362	NA	5' UTR (NM_001256493, exon 1 of 5)	5' UTR (NM_001256493, exon 1 of 5)	285	NM_001256493	70081	Mm.245648	NM_001256493	ENSMUSG00000078546	2210404O09Rik	-	RIKEN cDNA 2210404O09 gene	protein-coding
diff_RLAGL_Vector_cond1_1403	chr10	125265970	125266532	+	8.41221	NA	intron (NM_011391, intron 4 of 6)	intron (NM_011391, intron 4 of 6)	62284	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
diff_RLAGL_Vector_cond1_10063	chr9	47254374	47254616	+	8.41141	NA	Intergenic	MTD|LTR|ERVL-MaLR	255754	NM_001243258	215467	Mm.246572	NM_001243258		Gm4791	D930036J05	predicted gene 4791	protein-coding
diff_RLAGL_Vector_cond1_693	chr1	174433854	174434179	+	8.40952	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	3586	NM_146761	258756	Mm.223188	NM_146761	ENSMUSG00000051509	Olfr414	MOR103-10	olfactory receptor 414	protein-coding
diff_RLAGL_Vector_cond1_1279	chr10	100010246	100010564	+	8.40732	NA	Intergenic	Intergenic	-5419	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding
diff_RLAGL_Vector_cond1_1079	chr10	60151003	60151299	+	8.40537	NA	Intergenic	Intergenic	24375	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA
diff_RLAGL_Vector_cond1_8932	chr7	40181470	40181760	+	8.40348	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-493122	NR_045504	71029	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA
diff_RLAGL_Vector_cond1_9846	chr8	123042352	123042605	+	8.40123	NA	promoter-TSS (NM_001081379)	promoter-TSS (NM_001081379)	-97	NR_045268	100503178	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA
diff_RLAGL_Vector_cond1_7524	chr5	5688297	5688518	+	8.40056	NA	intron (NM_028734, intron 1 of 5)	intron (NM_028734, intron 1 of 5)	5682	NM_001103156	74051	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding
diff_RLAGL_Vector_cond1_3999	chr16	47536637	47536893	+	8.39794	NA	Intergenic	Intergenic	-746970	NM_001018002	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding
diff_RLAGL_Vector_cond1_226	chr1	65873820	65874112	+	8.39778	NA	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-52556	NM_027010	12969	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding
diff_RLAGL_Vector_cond1_7977	chr5	124046895	124047320	+	8.39423	NA	Intergenic	L2b|LINE|L2	-14847	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B (yeast)	protein-coding
diff_RLAGL_Vector_cond1_8734	chr6	142386783	142387554	+	8.39292	NA	promoter-TSS (NM_023042)	promoter-TSS (NM_023042)	-75	NM_025872	66964	Mm.3676	NM_025872	ENSMUSG00000030245	Golt1b	2310061A22Rik|AA407874|AU024291|CGI-141	golgi transport 1 homolog B (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_9344	chr8	4677279	4678288	+	8.39276	NA	Intergenic	CpG	64613	NM_145591	233987	Mm.102799	NM_145591		Zfp958	-	zinc finger protein 958	protein-coding
diff_RLAGL_Vector_cond1_10333	chr9	118040156	118040583	+	8.38882	NA	promoter-TSS (NM_001286508)	promoter-TSS (NM_001286508)	-153	NM_001286508	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding
diff_RLAGL_Vector_cond1_4682	chr17	90018563	90018789	+	8.38785	NA	Intergenic	RMER17B|LTR|ERVK	639435	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
diff_RLAGL_Vector_cond1_1124	chr10	74848438	74848656	+	8.38684	NA	Intergenic	Intergenic	-118684	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding
diff_RLAGL_Vector_cond1_7374	chr4	139019593	139019843	+	8.38680	NA	intron (NM_029857, intron 9 of 16)	intron (NM_029857, intron 9 of 16)	46813	NM_029857	77056	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding
diff_RLAGL_Vector_cond1_101	chr1	24678226	24678931	+	8.38634	NA	promoter-TSS (NM_026719)	promoter-TSS (NM_026719)	34	NM_026719	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7190	chr4	106982689	106983048	+	8.38491	NA	intron (NM_198438, intron 4 of 16)	intron (NM_198438, intron 4 of 16)	71398	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_9860	chr8	126824647	126824953	+	8.38422	NA	Intergenic	Intergenic	121121	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding
diff_RLAGL_Vector_cond1_4004	chr16	49294961	49295247	+	8.38358	NA	Intergenic	Intergenic	237618	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding
diff_RLAGL_Vector_cond1_8524	chr6	101374769	101374988	+	8.38355	NA	intron (NM_018884, intron 1 of 9)	intron (NM_018884, intron 1 of 9)	3019	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
diff_RLAGL_Vector_cond1_7323	chr4	133085052	133085289	+	8.38259	NA	Intergenic	Intergenic	-45463	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding
diff_RLAGL_Vector_cond1_3992	chr16	45361131	45361337	+	8.37893	NA	Intergenic	Intergenic	47819	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding
diff_RLAGL_Vector_cond1_273	chr1	74587999	74588391	+	8.37685	NA	promoter-TSS (NM_025784)	promoter-TSS (NM_025784)	-94	NM_025784	66821	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding
diff_RLAGL_Vector_cond1_1089	chr10	63024013	63024371	+	8.37601	NA	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	-320	NM_026085	67307	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_10185	chr9	83440951	83441365	+	8.37574	NA	promoter-TSS (NM_027448)	promoter-TSS (NM_027448)	-31	NM_029434	75782	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding
diff_RLAGL_Vector_cond1_301	chr1	82150925	82151287	+	8.37502	NA	Intergenic	Intergenic	19190	NR_105762	102466629		NR_105762	ENSMUSG00000098797	Mir6344	Gm27840|mmu-mir-6344	microRNA 6344	ncRNA
diff_RLAGL_Vector_cond1_2849	chr13	86046597	86046982	+	8.37412	NA	promoter-TSS (NM_007749)	promoter-TSS (NM_007749)	6	NM_007749	12867	Mm.378898	NM_007749		Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding
diff_RLAGL_Vector_cond1_459	chr1	121567683	121568369	+	8.37401	NA	promoter-TSS (NM_025860)	promoter-TSS (NM_025860)	-46	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
diff_RLAGL_Vector_cond1_9782	chr8	112985112	112985507	+	8.37334	NA	Intergenic	Intergenic	-81953	NR_033584	791378	Mm.350576	NR_033584		Gm10280	ENSMUSG00000069883	predicted gene 10280	ncRNA
diff_RLAGL_Vector_cond1_9150	chr7	101029526	101029758	+	8.37219	NA	Intergenic	Intergenic	-17589	NM_001302346	18442	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding
diff_RLAGL_Vector_cond1_8611	chr6	122810628	122811621	+	8.37006	NA	Intergenic	Intergenic	-9060	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding
diff_RLAGL_Vector_cond1_4226	chr16	97997137	97997543	+	8.36835	NA	promoter-TSS (NR_130962)	promoter-TSS (NR_130962)	-7	NR_130962	245305	Mm.488276	NR_130962		B230307C23Rik	EG245305|OTTMUSG00000028475	RIKEN cDNA B230307C23 gene	ncRNA
diff_RLAGL_Vector_cond1_2278	chr12	66438069	66438291	+	8.36824	NA	Intergenic	MLTR11A|LTR|ERVK	-153779	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding
diff_RLAGL_Vector_cond1_8715	chr6	139657079	139657511	+	8.36289	NA	Intergenic	Intergenic	-58564	NM_207683	18705	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	protein-coding
diff_RLAGL_Vector_cond1_2765	chr13	67172980	67173243	+	8.36233	NA	promoter-TSS (NM_001013769)	promoter-TSS (NM_001013769)	-71	NM_001013769	380855	Mm.284988	NM_001013769	ENSMUSG00000058900	Rsl1	rslcan-9	regulator of sex limited protein 1	protein-coding
diff_RLAGL_Vector_cond1_8074	chr5	140963128	140963369	+	8.36041	NA	intron (NM_175362, intron 1 of 24)	intron (NM_175362, intron 1 of 24)	37348	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding
diff_RLAGL_Vector_cond1_2363	chr12	91088362	91088580	+	8.35981	NA	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	-21758	NR_030473	735273		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA
diff_RLAGL_Vector_cond1_7217	chr4	113245864	113246180	+	8.35957	NA	intron (NM_001103199, intron 2 of 48)	RLTR22_Mur|LTR|ERVK	40951	NM_001103199	230622	Mm.291107	NM_001103199	ENSMUSG00000087194	Skint6	OTTMUSG00000008519	selection and upkeep of intraepithelial T cells 6	protein-coding
diff_RLAGL_Vector_cond1_4827	chr18	37806216	37806484	+	8.35760	NA	promoter-TSS (NM_033581)	promoter-TSS (NM_033581)	-60	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000023036	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding
diff_RLAGL_Vector_cond1_1792	chr11	83851978	83852300	+	8.35695	NA	promoter-TSS (NM_001291269)	promoter-TSS (NM_001291269)	-821	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding
diff_RLAGL_Vector_cond1_9727	chr8	95702889	95703104	+	8.35540	NA	promoter-TSS (NM_145602)	promoter-TSS (NM_145602)	-41	NM_145602	234593	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding
diff_RLAGL_Vector_cond1_9688	chr8	86759195	86759562	+	8.35524	NA	Intergenic	Intergenic	-13372	NM_009172	20437	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	seven in absentia 1A	protein-coding
diff_RLAGL_Vector_cond1_7039	chr4	70534930	70535388	+	8.35428	NA	promoter-TSS (NM_172694)	promoter-TSS (NM_172694)	-231	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
diff_RLAGL_Vector_cond1_4522	chr17	58903887	58904243	+	8.35356	NA	intron (NM_027001, intron 8 of 12)	intron (NM_027001, intron 8 of 12)	87310	NM_027001	69239	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding
diff_RLAGL_Vector_cond1_6279	chr3	50421467	50421672	+	8.34929	NA	intron (NM_011990, intron 5 of 11)	intron (NM_011990, intron 5 of 11)	22044	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
diff_RLAGL_Vector_cond1_6153	chr3	9004386	9004621	+	8.34867	NA	promoter-TSS (NM_001025264)	promoter-TSS (NM_001025264)	12	NM_001025263	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding
diff_RLAGL_Vector_cond1_501	chr1	134415162	134415458	+	8.34797	NA	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	-68	NM_028320	72674	Mm.259976	NM_028320		Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding
diff_RLAGL_Vector_cond1_7704	chr5	48679758	48680452	+	8.34775	NA	intron (NM_001199244, intron 1 of 7)	intron (NM_001199244, intron 1 of 7)	-80423	NM_001199245	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
diff_RLAGL_Vector_cond1_3400	chr14	123620206	123620696	+	8.34181	NA	intron (NM_177393, intron 1 of 43)	L1MA5|LINE|L1	6693	NM_177393	338370	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding
diff_RLAGL_Vector_cond1_9687	chr8	86623871	86624108	+	8.33982	NA	promoter-TSS (NM_025827)	promoter-TSS (NM_025827)	-54	NM_025827	66887	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding
diff_RLAGL_Vector_cond1_7861	chr5	101665251	101665505	+	8.33963	NA	promoter-TSS (NM_144955)	promoter-TSS (NM_144955)	-667	NM_144955	18096	Mm.193072	NM_144955		Nkx6-1	NKX6A|Nkx6.1	NK6 homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_2303	chr12	72519941	72520169	+	8.33960	NA	Intergenic	Intergenic	-16302	NM_026327	67708	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnxl4	1810048J11Rik|4932413O10|AU017192	pecanex-like 4 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8321	chr6	52158250	52158599	+	8.33829	NA	promoter-TSS (NM_010449)	promoter-TSS (NM_010449)	-100	NR_131181	105242658	Mm.372521	NR_131181		Hotairm1	Gm15051|Hoxaas1|OTTMUSG00000018870	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA
diff_RLAGL_Vector_cond1_6841	chr4	14826189	14826797	+	8.33827	NA	promoter-TSS (NM_152812)	promoter-TSS (NM_152812)	94	NM_152812	72201	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding
diff_RLAGL_Vector_cond1_6995	chr4	56113913	56114169	+	8.33772	NA	Intergenic	Intergenic	-581566	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding
diff_RLAGL_Vector_cond1_5937	chr2	151702346	151702557	+	8.33539	NA	intron (NM_001160363, intron 1 of 1)	CpG	443	NM_001160363	108832	Mm.103494	NM_001160363	ENSMUSG00000044364	Tmem74b	5430405G05Rik	transmembrane protein 74B	protein-coding
diff_RLAGL_Vector_cond1_4715	chr18	4775656	4775974	+	8.33519	NA	Intergenic	MER58A|DNA|hAT-Charlie	-36671	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA
diff_RLAGL_Vector_cond1_2887	chr13	98354165	98354433	+	8.33486	NA	promoter-TSS (NM_008242)	promoter-TSS (NM_008242)	54	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding
diff_RLAGL_Vector_cond1_9167	chr7	105399934	105400581	+	8.33437	NA	promoter-TSS (NM_001242365)	promoter-TSS (NM_001242365)	-203	NM_199009	74349	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding
diff_RLAGL_Vector_cond1_8391	chr6	68453467	68454069	+	8.33409	NA	Intergenic	RLTR13A|LTR|ERVK	873406	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA
diff_RLAGL_Vector_cond1_6111	chr2	178471810	178472474	+	8.33400	NA	intron (NM_001291189, intron 11 of 13)	intron (NM_001291189, intron 11 of 13)	41627	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding
diff_RLAGL_Vector_cond1_8967	chr7	47050470	47050723	+	8.32665	NA	promoter-TSS (NM_026436)	promoter-TSS (NM_026436)	-44	NM_026436	67893	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding
diff_RLAGL_Vector_cond1_10452	chrX	67924932	67925362	+	8.32591	NA	Intergenic	RMER1B|Other|Other	-3697	NM_025763	66780	Mm.79193	NM_025763	ENSMUSG00000025288	4933436I01Rik	-	RIKEN cDNA 4933436I01 gene	protein-coding
diff_RLAGL_Vector_cond1_10022	chr9	37432100	37432321	+	8.32557	NA	intron (NM_001164767, intron 1 of 27)	intron (NM_001164767, intron 1 of 27)	965	NM_001164767	19649	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout homolog 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8597	chr6	120835678	120836028	+	8.32479	NA	promoter-TSS (NM_153516)	promoter-TSS (NM_153516)	-377	NM_153516	94044	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding
diff_RLAGL_Vector_cond1_5992	chr2	160366983	160367349	+	8.32454	NA	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-101	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding
diff_RLAGL_Vector_cond1_1091	chr10	63582664	63582902	+	8.32402	NA	intron (NM_001164376, intron 5 of 17)	intron (NM_001164376, intron 5 of 17)	125272	NM_001164376	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding
diff_RLAGL_Vector_cond1_2272	chr12	59312556	59313012	+	8.32367	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	-93301	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
diff_RLAGL_Vector_cond1_1254	chr10	91183293	91183749	+	8.32115	NA	Intergenic	Intergenic	-11902	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
diff_RLAGL_Vector_cond1_9013	chr7	63938899	63939327	+	8.32073	NA	promoter-TSS (NM_021366)	promoter-TSS (NM_021366)	-198	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding
diff_RLAGL_Vector_cond1_6103	chr2	178023059	178023351	+	8.31694	NA	promoter-TSS (NM_001177400)	promoter-TSS (NM_001177400)	-79	NM_001177400	626848	Mm.422604	NM_001177399	ENSMUSG00000074519	Etohi1	-	ethanol induced 1	protein-coding
diff_RLAGL_Vector_cond1_3690	chr15	74487369	74487785	+	8.31662	NA	Intergenic	CpG	-28619	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding
diff_RLAGL_Vector_cond1_7077	chr4	81276342	81276594	+	8.31520	NA	Intergenic	Intergenic	166347	NM_001305284	17475	Mm.153039	NM_010820	ENSMUSG00000028402	Mpdz	AI225843|B930003D11Rik|MUPP1	multiple PDZ domain protein	protein-coding
diff_RLAGL_Vector_cond1_3889	chr16	20425890	20426174	+	8.31420	NA	intron (NM_176839, intron 1 of 6)	CpG	362	NM_176839	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding
diff_RLAGL_Vector_cond1_674	chr1	172475207	172475413	+	8.30923	NA	promoter-TSS (NM_029612)	promoter-TSS (NM_029612)	-50	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding
diff_RLAGL_Vector_cond1_2711	chr13	60067437	60067658	+	8.30904	NA	intron (NR_046142, intron 1 of 2)	intron (NR_046142, intron 1 of 2)	37836	NR_046142	328263	Mm.123405	NR_046142		A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA
diff_RLAGL_Vector_cond1_1175	chr10	81014822	81015259	+	8.30884	NA	promoter-TSS (NM_010319)	promoter-TSS (NM_010319)	-115	NM_010319	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding
diff_RLAGL_Vector_cond1_2222	chr12	50120658	50120895	+	8.30861	NA	Intergenic	Intergenic	528447	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
diff_RLAGL_Vector_cond1_4858	chr18	44380214	44380440	+	8.30367	NA	promoter-TSS (NM_027490)	promoter-TSS (NM_027490)	-173	NM_027490	70640	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	DCP2 decapping enzyme homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1210	chr10	85739605	85739882	+	8.30340	NA	Intergenic	RMER15|LTR|ERVL	-132088	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_839	chr10	3749616	3749942	+	8.30335	NA	intron (NM_001159942, intron 1 of 16)	intron (NM_001159942, intron 1 of 16)	9402	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
diff_RLAGL_Vector_cond1_1938	chr11	112835433	112836021	+	8.30308	NA	Intergenic	Intergenic	-10599	NR_130164	76393	Mm.86795	NR_130164		1700012H19Rik	-	RIKEN cDNA 1700012H19 gene	ncRNA
diff_RLAGL_Vector_cond1_3102	chr14	44865690	44866000	+	8.30064	NA	Intergenic	Intergenic	-6470	NM_008962	19214	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding
diff_RLAGL_Vector_cond1_4945	chr18	70089994	70090443	+	8.30017	NA	intron (NM_001082553, intron 2 of 6)	intron (NM_001082553, intron 2 of 6)	-36630	NM_001302798	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_6513	chr3	105704464	105704719	+	8.29790	NA	promoter-TSS (NM_175398)	promoter-TSS (NM_175398)	-8	NM_175398	109050	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik	family with sequence similarity 212, member B	protein-coding
diff_RLAGL_Vector_cond1_6483	chr3	99140925	99141690	+	8.29673	NA	intron (NM_027462, intron 1 of 5)	CpG	217	NM_027462	70560	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding
diff_RLAGL_Vector_cond1_137	chr1	37997941	37998160	+	8.29650	NA	promoter-TSS (NM_172054)	promoter-TSS (NM_172054)	40	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding
diff_RLAGL_Vector_cond1_551	chr1	146426954	146427231	+	8.29611	NA	Intergenic	RLTR9E|LTR|ERVK	-68574	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_630	chr1	163562164	163562752	+	8.29599	NA	Intergenic	MIRb|SINE|MIR	-158789	NM_178883	98376	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding
diff_RLAGL_Vector_cond1_3437	chr15	7226300	7226538	+	8.29418	NA	intron (NM_001289496, intron 17 of 22)	intron (NM_001289496, intron 17 of 22)	85877	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding
diff_RLAGL_Vector_cond1_4170	chr16	88204502	88204757	+	8.29271	NA	intron (NM_010348, intron 1 of 15)	intron (NM_010348, intron 1 of 15)	85629	NM_146072	14805	Mm.5134	NM_010348		Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding
diff_RLAGL_Vector_cond1_2336	chr12	84180864	84181387	+	8.28932	NA	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	12890	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4072	chr16	62942532	62942918	+	8.28806	NA	Intergenic	Intergenic	88418	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
diff_RLAGL_Vector_cond1_9213	chr7	121348345	121348983	+	8.28747	NA	Intergenic	RLTR34B_MM|LTR|ERVK	-43632	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding
diff_RLAGL_Vector_cond1_9704	chr8	90401502	90401884	+	8.28700	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-53441	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
diff_RLAGL_Vector_cond1_7760	chr5	66897378	66897888	+	8.28198	NA	intron (NM_001001980, intron 3 of 25)	intron (NM_001001980, intron 3 of 25)	-70783	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding
diff_RLAGL_Vector_cond1_2837	chr13	81657268	81657528	+	8.28186	NA	promoter-TSS (NM_030257)	promoter-TSS (NM_030257)	-408	NM_030257	80289	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_6283	chr3	50674820	50675443	+	8.27987	NA	Intergenic	Intergenic	-231518	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
diff_RLAGL_Vector_cond1_2852	chr13	86345055	86345658	+	8.27819	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-298561	NM_007749	12867	Mm.378898	NM_007749		Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding
diff_RLAGL_Vector_cond1_2478	chr12	116449625	116449864	+	8.27679	NA	intron (NM_133762, intron 26 of 28)	MTD|LTR|ERVL-MaLR	-35976	NM_011215	19276	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding
diff_RLAGL_Vector_cond1_9075	chr7	75739173	75739395	+	8.27546	NA	intron (NM_029332, intron 29 of 36)	intron (NM_029332, intron 29 of 36)	-109054	NM_182782	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding
diff_RLAGL_Vector_cond1_10016	chr9	36863820	36864312	+	8.27335	NA	intron (NM_183171, intron 4 of 8)	intron (NM_183171, intron 4 of 8)	20407	NM_183171	235180	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding
diff_RLAGL_Vector_cond1_8245	chr6	31079622	31079867	+	8.27323	NA	Intergenic	Intergenic	-16651	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA
diff_RLAGL_Vector_cond1_7985	chr5	129161362	129161644	+	8.27261	NA	intron (NM_001081342, intron 14 of 25)	intron (NM_001081342, intron 14 of 25)	64753	NM_001081342	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding
diff_RLAGL_Vector_cond1_3292	chr14	100477757	100477999	+	8.27234	NA	Intergenic	Intergenic	-328082	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
diff_RLAGL_Vector_cond1_6086	chr2	173977660	173977936	+	8.26879	NA	Intergenic	Intergenic	-99253	NM_001102424	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding
diff_RLAGL_Vector_cond1_10609	chrX	164076509	164076721	+	8.26840	NA	promoter-TSS (NM_009173)	promoter-TSS (NM_009173)	-122	NM_001308385	20438	Mm.37215	NM_009173	ENSMUSG00000040749	Siah1b	AA960570|Sinh1b|siah-1b	seven in absentia 1B	protein-coding
diff_RLAGL_Vector_cond1_10511	chrX	105684458	105684790	+	8.26737	NA	Intergenic	Intergenic	-79853	NM_030614	80903	Mm.154768	NM_030614		Fgf16	-	fibroblast growth factor 16	protein-coding
diff_RLAGL_Vector_cond1_8108	chr5	148789184	148789611	+	8.26559	NA	Intergenic	Intergenic	11434	NR_131106	78015	Mm.243839	NR_131106		4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA
diff_RLAGL_Vector_cond1_9734	chr8	100897725	100897977	+	8.26500	NA	Intergenic	Intergenic	1481177	NR_132435	234624	Mm.124595	NM_175479		A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA
diff_RLAGL_Vector_cond1_3023	chr14	17172721	17173081	+	8.26313	NA	Intergenic	CpG	-90570	NM_001289760	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding
diff_RLAGL_Vector_cond1_4305	chr17	21650043	21650925	+	8.26260	NA	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-127	NM_001166497	73229	Mm.296733	NM_001166497		3110052M02Rik	mszf57|mszf71	RIKEN cDNA 3110052M02 gene	protein-coding
diff_RLAGL_Vector_cond1_1283	chr10	102049265	102049514	+	8.25926	NA	intron (NM_001205098, intron 3 of 7)	intron (NM_001205098, intron 3 of 7)	-109469	NM_001162368	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
diff_RLAGL_Vector_cond1_9546	chr8	55347938	55348146	+	8.25588	NA	Intergenic	Intergenic	393314	NM_153581	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding
diff_RLAGL_Vector_cond1_10323	chr9	116199021	116199346	+	8.25549	NA	Intergenic	Intergenic	-23820	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding
diff_RLAGL_Vector_cond1_6697	chr3	146852043	146852831	+	8.25279	NA	promoter-TSS (NM_001302958)	promoter-TSS (NM_001302958)	70	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding
diff_RLAGL_Vector_cond1_853	chr10	6035886	6036434	+	8.25260	NA	Intergenic	Intergenic	-113760	NM_001161822	56533	Mm.44606	NM_019958	ENSMUSG00000019775	Rgs17	6430507P11Rik|Rgsz2	regulator of G-protein signaling 17	protein-coding
diff_RLAGL_Vector_cond1_10142	chr9	67760047	67760550	+	8.24871	NA	exon (NM_001081314, exon 2 of 2)	exon (NM_001081314, exon 2 of 2)	861	NM_001081314	75697	Mm.105353	NM_001081314	ENSMUSG00000091956	C2cd4b	3300001A09Rik|Fam148b	C2 calcium-dependent domain containing 4B	protein-coding
diff_RLAGL_Vector_cond1_3198	chr14	70055949	70056216	+	8.24871	NA	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-21363	NM_001289925	13655	Mm.103737	NM_018781		Egr3	Pilot	early growth response 3	protein-coding
diff_RLAGL_Vector_cond1_3487	chr15	25589344	25589591	+	8.24638	NA	Intergenic	MTD|LTR|ERVL-MaLR	-33083	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799	myosin X	protein-coding
diff_RLAGL_Vector_cond1_5536	chr2	68362906	68363470	+	8.24589	NA	intron (NM_016866, intron 8 of 17)	intron (NM_016866, intron 8 of 17)	108793	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding
diff_RLAGL_Vector_cond1_7032	chr4	65604855	65605288	+	8.24501	NA	promoter-TSS (NM_001161782)	promoter-TSS (NM_001161782)	85	NM_053084	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding
diff_RLAGL_Vector_cond1_5301	chr2	15166583	15166903	+	8.24458	NA	Intergenic	Intergenic	111381	NM_029466	75869	Mm.174068	NM_029466		Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding
diff_RLAGL_Vector_cond1_10578	chrX	152016305	152016536	+	8.24445	NA	promoter-TSS (NM_019710)	promoter-TSS (NM_019710)	-8	NM_019710	24061	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding
diff_RLAGL_Vector_cond1_457	chr1	121327792	121328170	+	8.24438	NA	promoter-TSS (NM_133748)	promoter-TSS (NM_133748)	43	NM_133748	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding
diff_RLAGL_Vector_cond1_4008	chr16	49907382	49907582	+	8.24331	NA	intron (NM_010581, intron 9 of 9)	intron (NM_010581, intron 9 of 9)	51828	NM_010581	16423	Mm.31752	NM_010581		Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding
diff_RLAGL_Vector_cond1_2412	chr12	104144041	104144279	+	8.24132	NA	Intergenic	RLTR22_Mur|LTR|ERVK	9712	NM_008458	16625	Mm.422814	NM_008458		Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding
diff_RLAGL_Vector_cond1_9411	chr8	21832133	21832414	+	8.24071	NA	TTS (NM_199067)	TTS (NM_199067)	-7653	NM_010030	13215	Mm.41981	NM_010030	ENSMUSG00000006570	Defb2	BD-2	defensin beta 2	protein-coding
diff_RLAGL_Vector_cond1_1173	chr10	80826202	80826580	+	8.23452	NA	promoter-TSS (NM_008753)	promoter-TSS (NM_008753)	-265	NM_001301034	18245	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding
diff_RLAGL_Vector_cond1_639	chr1	165302801	165303076	+	8.23429	NA	intron (NM_001310430, intron 1 of 5)	intron (NM_001310430, intron 1 of 5)	315	NM_001310430	240888	Mm.329929	NM_001081126	ENSMUSG00000040836	Gpr161	Gm208|Gm208Gpr|vl	G protein-coupled receptor 161	protein-coding
diff_RLAGL_Vector_cond1_10496	chrX	96095892	96096162	+	8.23355	NA	promoter-TSS (NM_010833)	promoter-TSS (NM_010833)	-18	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding
diff_RLAGL_Vector_cond1_9894	chr9	6344949	6345360	+	8.23315	NA	intron (NM_027924, intron 5 of 6)	intron (NM_027924, intron 5 of 6)	-78607	NM_027942	71829	Mm.141452	NM_027942	ENSMUSG00000047619	Ddi1	1700011N24Rik	DDI1, DNA-damage inducible 1, homolog 1 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8438	chr6	86233673	86234431	+	8.23304	NA	intron (NM_031199, intron 2 of 5)	intron (NM_031199, intron 2 of 5)	38825	NM_031199	21802	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding
diff_RLAGL_Vector_cond1_8856	chr7	19749722	19749927	+	8.23243	NA	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-251	NM_008990	19294	Mm.4341	NM_008990	ENSMUSG00000062300	Pvrl2	AI325026|AI987993|Cd112|MPH|Pvr|Pvs|nectin-2	poliovirus receptor-related 2	protein-coding
diff_RLAGL_Vector_cond1_2746	chr13	63301769	63302011	+	8.23118	NA	promoter-TSS (NR_037235)	promoter-TSS (NR_037235)	-607	NR_037235	100526474		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA
diff_RLAGL_Vector_cond1_2084	chr12	13217637	13217859	+	8.23116	NA	Intergenic	Intergenic	31426	NM_134040	104721	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_2353	chr12	88256247	88256468	+	8.23096	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	18140	NM_001013824	435337	Mm.441366	NM_001013824	ENSMUSG00000079029	Gm5662	EG435337	predicted gene 5662	protein-coding
diff_RLAGL_Vector_cond1_7094	chr4	84149513	84149721	+	8.23090	NA	Intergenic	MIRb|SINE|MIR	-104738	NR_130998	78238	Mm.243903	NR_130998		6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA
diff_RLAGL_Vector_cond1_1813	chr11	87702527	87702762	+	8.22790	NA	intron (NR_045139, intron 1 of 1)	intron (NR_045139, intron 1 of 1)	3120	NR_045139	68690	Mm.342009	NR_045139		1110028F11Rik	-	RIKEN cDNA 1110028F11 gene	ncRNA
diff_RLAGL_Vector_cond1_3687	chr15	73724564	73724950	+	8.22723	NA	promoter-TSS (NM_001166388)	promoter-TSS (NM_001166388)	-173	NM_001166388	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding
diff_RLAGL_Vector_cond1_3012	chr14	14703270	14703508	+	8.22507	NA	intron (NM_001033270, intron 1 of 24)	CpG	364	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding
diff_RLAGL_Vector_cond1_10505	chrX	99410962	99411471	+	8.22505	NA	intron (NR_033544, intron 6 of 6)	intron (NR_033544, intron 6 of 6)	32581	NR_033544	100038584	Mm.368385	NR_033544	ENSMUSG00000073051	Gm14812	ENSMUSG00000073051|OTTMUSG00000018066	predicted gene 14812	ncRNA
diff_RLAGL_Vector_cond1_3517	chr15	32718726	32718940	+	8.22381	NA	Intergenic	RMER1B|Other|Other	-201890	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding
diff_RLAGL_Vector_cond1_6140	chr3	5575766	5576351	+	8.22352	NA	5' UTR (NM_001163306, exon 1 of 5)	5' UTR (NM_001163306, exon 1 of 5)	190	NM_008994	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding
diff_RLAGL_Vector_cond1_37	chr1	9565117	9565349	+	8.22321	NA	intron (NM_175236, intron 12 of 13)	intron (NM_175236, intron 12 of 13)	17187	NM_175236	76187	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8	alcohol dehydrogenase, iron containing, 1	protein-coding
diff_RLAGL_Vector_cond1_9292	chr7	138284238	138284477	+	8.22133	NA	intron (NM_183289, intron 4 of 11)	intron (NM_183289, intron 4 of 11)	113373	NM_183289	70571	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding
diff_RLAGL_Vector_cond1_3385	chr14	121731865	121732076	+	8.21897	NA	intron (NM_134074, intron 1 of 52)	intron (NM_134074, intron 1 of 52)	6959	NM_001128308	105445	Mm.441054	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding
diff_RLAGL_Vector_cond1_5274	chr2	11503149	11503488	+	8.21828	NA	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-1228	NM_001177753	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding
diff_RLAGL_Vector_cond1_2349	chr12	86859443	86859706	+	8.21451	NA	Intergenic	Intergenic	25240	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding
diff_RLAGL_Vector_cond1_4432	chr17	44709948	44710181	+	8.21352	NA	intron (NR_073392, intron 4 of 7)	intron (NR_073392, intron 4 of 7)	26112	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_3733	chr15	83724906	83725224	+	8.21308	NA	promoter-TSS (NM_022723)	promoter-TSS (NM_022723)	-26	NM_022723	64706	Mm.40393	NM_022723	ENSMUSG00000016763	Scube1	7330410C13Rik|A630023E24Rik	signal peptide, CUB domain, EGF-like 1	protein-coding
diff_RLAGL_Vector_cond1_185	chr1	53889843	53890070	+	8.20870	NA	intron (NM_001001883, intron 15 of 28)	intron (NM_001001883, intron 15 of 28)	40532	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA
diff_RLAGL_Vector_cond1_2636	chr13	36720345	36720551	+	8.20865	NA	Intergenic	Intergenic	14029	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding
diff_RLAGL_Vector_cond1_2386	chr12	100281459	100281846	+	8.20723	NA	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	5043	NR_045741	100038713	Mm.470751	NR_045741		Gm10432	ENSMUSG00000072882	predicted gene 10432	ncRNA
diff_RLAGL_Vector_cond1_2658	chr13	44663225	44663482	+	8.20623	NA	Intergenic	Intergenic	-67421	NM_001205044	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding
diff_RLAGL_Vector_cond1_6117	chr2	178929977	178930435	+	8.20571	NA	Intergenic	MT2A|LTR|ERVL	-484730	NM_026596	68175	Mm.158187	NM_026596		4930591A17Rik	-	RIKEN cDNA 4930591A17 gene	protein-coding
diff_RLAGL_Vector_cond1_9159	chr7	103644486	103644804	+	8.20543	NA	Intergenic	RLTR13A|LTR|ERVK	-4507	NM_147083	259087	Mm.377832	NM_147083	ENSMUSG00000050085	Olfr622	MOR26-1	olfactory receptor 622	protein-coding
diff_RLAGL_Vector_cond1_10471	chrX	78019867	78020347	+	8.20535	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	71267	NM_008754	18249	Mm.430771	NM_008754	ENSMUSG00000067684	Obp1a	OBP-1a|OBP5	odorant binding protein IA	protein-coding
diff_RLAGL_Vector_cond1_7743	chr5	63587136	63587336	+	8.20485	NA	Intergenic	Intergenic	-61867	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_6336	chr3	60698091	60698465	+	8.20380	NA	Intergenic	Intergenic	197099	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6434	chr3	87566006	87566480	+	8.20259	NA	Intergenic	Intergenic	40665	NM_001286844	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding
diff_RLAGL_Vector_cond1_8066	chr5	139484499	139484776	+	8.20215	NA	promoter-TSS (NM_001159908)	promoter-TSS (NM_001159908)	-146	NM_001159908	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding
diff_RLAGL_Vector_cond1_4996	chr18	80083095	80083352	+	8.20032	NA	intron (NM_053117, intron 2 of 2)	intron (NM_053117, intron 2 of 2)	36328	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding
diff_RLAGL_Vector_cond1_8389	chr6	67170417	67170643	+	8.20024	NA	Intergenic	Intergenic	-96449	NM_001113566	66870	Mm.240490	NM_025814		Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_4625	chr17	79354858	79355442	+	8.19928	NA	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	-59	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding
diff_RLAGL_Vector_cond1_9866	chr8	128264582	128264783	+	8.19852	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	13543	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA
diff_RLAGL_Vector_cond1_9780	chr8	112718431	112718719	+	8.19771	NA	intron (NM_130457, intron 3 of 23)	intron (NM_130457, intron 3 of 23)	148532	NM_130457	170571	Mm.209232	NM_130457	ENSMUSG00000031772	Cntnap4	Caspr4|E130114F09Rik	contactin associated protein-like 4	protein-coding
diff_RLAGL_Vector_cond1_5076	chr19	10101619	10102087	+	8.19731	NA	promoter-TSS (NM_019699)	promoter-TSS (NM_019699)	-350	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding
diff_RLAGL_Vector_cond1_9772	chr8	110217601	110217808	+	8.19654	NA	promoter-TSS (NM_146215)	promoter-TSS (NM_146215)	-256	NM_146215	234728	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_5104	chr19	17800853	17801123	+	8.19625	NA	intron (NM_001190483, intron 1 of 37)	intron (NM_001190483, intron 1 of 37)	36644	NM_001163144	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding
diff_RLAGL_Vector_cond1_4917	chr18	64712698	64713052	+	8.19613	NA	Intergenic	Intergenic	-51875	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding
diff_RLAGL_Vector_cond1_8831	chr7	13310518	13310733	+	8.19526	NA	intron (NM_001199310, intron 27 of 28)	intron (NM_001199310, intron 27 of 28)	-15042	NM_001168504	232889	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding
diff_RLAGL_Vector_cond1_3782	chr15	94543362	94543629	+	8.19492	NA	promoter-TSS (NM_029926)	promoter-TSS (NM_029926)	12	NM_172437	78895	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7 homolog (S. cerevisiae)-like	protein-coding
diff_RLAGL_Vector_cond1_777	chr1	187662564	187662817	+	8.19330	NA	intron (NM_001243792, intron 1 of 7)	intron (NM_001243792, intron 1 of 7)	53684	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding
diff_RLAGL_Vector_cond1_5962	chr2	155604995	155605285	+	8.19326	NA	Intergenic	Intergenic	-6103	NM_001085378	668940	Mm.469980	NM_001085378	ENSMUSG00000074652	Myh7b	Myh14	myosin, heavy chain 7B, cardiac muscle, beta	protein-coding
diff_RLAGL_Vector_cond1_4955	chr18	72918546	72918930	+	8.19198	NA	Intergenic	Intergenic	-567669	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
diff_RLAGL_Vector_cond1_2352	chr12	87388354	87388632	+	8.18968	NA	promoter-TSS (NM_011479)	promoter-TSS (NM_011479)	-138	NM_011479	20773	Mm.565	NM_011479		Sptlc2	LCB2|LCB2a	serine palmitoyltransferase, long chain base subunit 2	protein-coding
diff_RLAGL_Vector_cond1_2619	chr13	30136331	30136566	+	8.18756	NA	promoter-TSS (NM_153546)	promoter-TSS (NM_153546)	-42	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7404	chr4	142170975	142171448	+	8.18588	NA	intron (NM_144531, intron 1 of 13)	intron (NM_144531, intron 1 of 13)	38997	NM_144531	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding
diff_RLAGL_Vector_cond1_2857	chr13	89585259	89585503	+	8.18420	NA	intron (NM_013500, intron 2 of 4)	intron (NM_013500, intron 2 of 4)	44745	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding
diff_RLAGL_Vector_cond1_911	chr10	18507998	18508421	+	8.18385	NA	intron (NM_001163592, intron 3 of 7)	intron (NM_001163592, intron 3 of 7)	37867	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_2792	chr13	69534537	69534868	+	8.18346	NA	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-838	NM_198600	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_9519	chr8	47533364	47533635	+	8.17964	NA	promoter-TSS (NM_203507)	promoter-TSS (NM_203507)	-29	NM_177240	320714	Mm.39461	NM_177240	ENSMUSG00000038102	Trappc11	AW558465|D030016E14Rik|R75422	trafficking protein particle complex 11	protein-coding
diff_RLAGL_Vector_cond1_5568	chr2	77540729	77541169	+	8.17724	NA	intron (NM_178723, intron 3 of 9)	MIR|SINE|MIR	-21283	NM_001113400	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding
diff_RLAGL_Vector_cond1_7581	chr5	23153337	23153577	+	8.17667	NA	intron (NM_029990, intron 2 of 2)	ORR1A4-int|LTR|ERVL-MaLR	280896	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA
diff_RLAGL_Vector_cond1_8360	chr6	60746052	60746259	+	8.17630	NA	intron (NM_009221, intron 4 of 5)	intron (NM_009221, intron 4 of 5)	82849	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding
diff_RLAGL_Vector_cond1_3905	chr16	24313654	24314075	+	8.17390	NA	Intergenic	Intergenic	-79486	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding
diff_RLAGL_Vector_cond1_3466	chr15	11552113	11552370	+	8.17239	NA	Intergenic	Intergenic	-152583	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding
diff_RLAGL_Vector_cond1_6866	chr4	21712224	21712510	+	8.17215	NA	Intergenic	RMER21A|LTR|ERV1	-15334	NM_016746	51813	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding
diff_RLAGL_Vector_cond1_7838	chr5	93221775	93222098	+	8.17138	NA	Intergenic	Intergenic	15418	NM_029363	75610	Mm.175502	NM_029363	ENSMUSG00000029384	2010109A12Rik	-	RIKEN cDNA 2010109A12 gene	protein-coding
diff_RLAGL_Vector_cond1_9891	chr9	5870842	5871093	+	8.17102	NA	Intergenic	L1_Mus3|LINE|L1	-297645	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding
diff_RLAGL_Vector_cond1_7999	chr5	131613361	131613655	+	8.16923	NA	intron (NM_177047, intron 5 of 18)	intron (NM_177047, intron 5 of 18)	-266761	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
diff_RLAGL_Vector_cond1_1706	chr11	64728051	64728286	+	8.16769	NA	Intergenic	Intergenic	-250867	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC homolog 2 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_5280	chr2	12007267	12007495	+	8.16679	NA	Intergenic	Intergenic	229628	NM_177268	320816	Mm.260201	NM_177268		Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding
diff_RLAGL_Vector_cond1_5471	chr2	53191150	53191433	+	8.16602	NA	promoter-TSS (NM_018785)	promoter-TSS (NM_018785)	-104	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP11|Fnbp11|Fnbp3	PRP40 pre-mRNA processing factor 40 homolog A (yeast)	protein-coding
diff_RLAGL_Vector_cond1_5859	chr2	141117730	141118180	+	8.16595	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-446479	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_6607	chr3	130522193	130522404	+	8.16571	NA	intron (NM_001244952, intron 14 of 35)	intron (NM_001244952, intron 14 of 35)	-95150	NM_001163587	71760	Mm.29125	NM_027907		Etnppl	1300019H02Rik|AI195447|Agxt2l1	ethanolamine phosphate phospholyase	protein-coding
diff_RLAGL_Vector_cond1_2912	chr13	107544570	107544894	+	8.16508	NA	Intergenic	MTC|LTR|ERVL-MaLR	74910	NR_045083	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA
diff_RLAGL_Vector_cond1_6988	chr4	54094188	54094663	+	8.16430	NA	Intergenic	Intergenic	268380	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding
diff_RLAGL_Vector_cond1_6722	chr3	149386151	149386448	+	8.16403	NA	Intergenic	Intergenic	111562	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
diff_RLAGL_Vector_cond1_6545	chr3	115792655	115793045	+	8.16227	NA	Intergenic	Intergenic	-77795	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding
diff_RLAGL_Vector_cond1_515	chr1	136172715	136172950	+	8.16207	NA	exon (NM_001039472, exon 34 of 35)	exon (NM_001039472, exon 34 of 35)	41431	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding
diff_RLAGL_Vector_cond1_9983	chr9	29319297	29319547	+	8.16177	NA	intron (NM_172290, intron 2 of 7)	intron (NM_172290, intron 2 of 7)	643707	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
diff_RLAGL_Vector_cond1_8924	chr7	39478916	39479504	+	8.15987	NA	Intergenic	Intergenic	29692	NM_001243021	233147	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding
diff_RLAGL_Vector_cond1_2035	chr12	3365041	3365438	+	8.15673	NA	5' UTR (NM_008445, exon 1 of 8)	5' UTR (NM_008445, exon 1 of 8)	107	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding
diff_RLAGL_Vector_cond1_4656	chr17	86194087	86194293	+	8.15645	NA	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	26405	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding
diff_RLAGL_Vector_cond1_6729	chr3	152078899	152079330	+	8.15484	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	86786	NM_016867	54120	Mm.97	NM_016867		Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding
diff_RLAGL_Vector_cond1_5107	chr19	19111113	19111615	+	8.15425	NA	promoter-TSS (NM_001043354)	promoter-TSS (NM_001043354)	-168	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
diff_RLAGL_Vector_cond1_1412	chr10	125844970	125845174	+	8.15401	NA	Intergenic	Intergenic	-121147	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
diff_RLAGL_Vector_cond1_5873	chr2	143062969	143063503	+	8.15338	NA	intron (NM_021335, intron 1 of 6)	CpG	167	NM_021335	20639	Mm.1323	NM_021335		Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding
diff_RLAGL_Vector_cond1_10461	chrX	75673853	75674510	+	8.15272	NA	Intergenic	Intergenic	90518	NR_029443	74396	Mm.162493	NR_029443	ENSMUSG00000087396	4933407K13Rik	A130080L05Rik	RIKEN cDNA 4933407K13 gene	ncRNA
diff_RLAGL_Vector_cond1_10391	chrX	7648668	7649068	+	8.15231	NA	exon (NM_009305, exon 6 of 7)	exon (NM_009305, exon 6 of 7)	-8511	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle homolog 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2848	chr13	85288854	85289726	+	8.15103	NA	5' UTR (NM_145452, exon 1 of 25)	5' UTR (NM_145452, exon 1 of 25)	196	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding
diff_RLAGL_Vector_cond1_6467	chr3	95588588	95589073	+	8.14948	NA	promoter-TSS (NM_001177670)	promoter-TSS (NM_001177670)	-104	NM_001177670	229593	Mm.245830	NM_146133	ENSMUSG00000046519	Golph3l	2010204I15Rik|AU015439|AW549227|C77637|Gpp34r	golgi phosphoprotein 3-like	protein-coding
diff_RLAGL_Vector_cond1_9585	chr8	65175119	65175389	+	8.14888	NA	Intergenic	Intergenic	-45717	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA
diff_RLAGL_Vector_cond1_3059	chr14	27862329	27862628	+	8.14698	NA	intron (NM_177814, intron 3 of 15)	intron (NM_177814, intron 3 of 15)	240036	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding
diff_RLAGL_Vector_cond1_1587	chr11	31851953	31852399	+	8.14231	NA	Intergenic	Intergenic	-18764	NM_001290678	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_10106	chr9	59691670	59691984	+	8.14224	NA	Intergenic	Intergenic	-15937	NM_001033498	546134	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463	GRAM domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_2045	chr12	5276970	5277391	+	8.14088	NA	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	98502	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding
diff_RLAGL_Vector_cond1_5375	chr2	30391972	30392404	+	8.13933	NA	promoter-TSS (NM_001290508)	promoter-TSS (NM_001290508)	-66	NM_001290509	57170	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding
diff_RLAGL_Vector_cond1_5503	chr2	61245657	61245868	+	8.13880	NA	Intergenic	Intergenic	-270611	NR_045335	100038493	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	ENSMUSG00000075325|OTTMUSG00000012844	predicted gene 13582	ncRNA
diff_RLAGL_Vector_cond1_325	chr1	86503382	86503774	+	8.13631	NA	Intergenic	Intergenic	-23158	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding
diff_RLAGL_Vector_cond1_1596	chr11	34833327	34834053	+	8.13608	NA	promoter-TSS (NM_027411)	promoter-TSS (NM_027411)	-49	NM_027411	70385	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding
diff_RLAGL_Vector_cond1_7263	chr4	122955404	122955749	+	8.13560	NA	intron (NM_029662, intron 3 of 13)	intron (NM_029662, intron 3 of 13)	5612	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding
diff_RLAGL_Vector_cond1_8596	chr6	120666212	120666678	+	8.13525	NA	promoter-TSS (NM_001128151)	promoter-TSS (NM_001128151)	24	NM_001128151	330409	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	cat eye syndrome chromosome region, candidate 2	protein-coding
diff_RLAGL_Vector_cond1_8529	chr6	106876713	106877011	+	8.13357	NA	Intergenic	RMER15|LTR|ERVL	-76775	NM_175357	58799	Mm.290085	NM_021449		Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding
diff_RLAGL_Vector_cond1_10094	chr9	56950546	56950993	+	8.13194	NA	promoter-TSS (NM_178374)	promoter-TSS (NM_178374)	-155	NM_178374	66069	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding
diff_RLAGL_Vector_cond1_2075	chr12	11615287	11615536	+	8.13168	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	159332	NM_001111118	209550	Mm.341257	NM_001111118	ENSMUSG00000086022	Rad51ap2	EG209550	RAD51 associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_9974	chr9	25590908	25591108	+	8.13078	NA	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	109411	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3053	chr14	25377932	25378356	+	8.13001	NA	Intergenic	Intergenic	-81041	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding
diff_RLAGL_Vector_cond1_4090	chr16	68275046	68275348	+	8.12904	NA	Intergenic	RMER20A|LTR|ERVK	-654289	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_4560	chr17	68841610	68841905	+	8.12522	NA	exon (NM_001206661, exon 2 of 2)	exon (NM_001206661, exon 2 of 2)	4621	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding
diff_RLAGL_Vector_cond1_371	chr1	94034952	94035589	+	8.12315	NA	Intergenic	Intergenic	14777	NM_001310769	241159	Mm.214565	NM_173772	ENSMUSG00000034000	Neu4	9330166I04	sialidase 4	protein-coding
diff_RLAGL_Vector_cond1_4458	chr17	47834531	47834765	+	8.12259	NA	promoter-TSS (NM_001109973)	promoter-TSS (NM_001109973)	43	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding
diff_RLAGL_Vector_cond1_6229	chr3	28634133	28634365	+	8.12210	NA	intron (NM_001163007, intron 21 of 31)	intron (NM_001163007, intron 21 of 31)	-63654	NM_031197	20526	Mm.18443	NM_031197		Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding
diff_RLAGL_Vector_cond1_4669	chr17	87613414	87613617	+	8.11931	NA	Intergenic	Intergenic	-22464	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_5548	chr2	71690722	71691053	+	8.11890	NA	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-28530	NR_037979	381371	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA
diff_RLAGL_Vector_cond1_2725	chr13	61710914	61711123	+	8.11543	NA	Intergenic	IAPEY4_LTR|LTR|ERVK	-60562	NR_028430	432812	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo
diff_RLAGL_Vector_cond1_8	chr1	4802530	4802749	+	8.11341	NA	Intergenic	RLTR9D|LTR|ERVK	-5254	NM_008866	18777	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	Pla1a	lysophospholipase 1	protein-coding
diff_RLAGL_Vector_cond1_4578	chr17	71823814	71824181	+	8.11321	NA	intron (NM_175378, intron 8 of 13)	intron (NM_175378, intron 8 of 13)	42050	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding
diff_RLAGL_Vector_cond1_841	chr10	3978407	3978716	+	8.11311	NA	intron (NM_172308, intron 1 of 27)	intron (NM_172308, intron 1 of 27)	5486	NM_172308	270685	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
diff_RLAGL_Vector_cond1_584	chr1	153769424	153770320	+	8.11272	NA	Intergenic	RMER17B|LTR|ERVK	20446	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding
diff_RLAGL_Vector_cond1_2570	chr13	17694964	17695277	+	8.11255	NA	promoter-TSS (NM_025479)	promoter-TSS (NM_025479)	-293	NM_025479	66308	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding
diff_RLAGL_Vector_cond1_4403	chr17	35673666	35673988	+	8.11174	NA	promoter-TSS (NM_010364)	promoter-TSS (NM_010364)	-84	NM_010364	14885	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding
diff_RLAGL_Vector_cond1_1402	chr10	125161378	125161624	+	8.11162	NA	Intergenic	Intergenic	167034	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
diff_RLAGL_Vector_cond1_3730	chr15	83236815	83237040	+	8.11154	NA	intron (NM_001004150, intron 1 of 2)	RMER17B2|LTR|ERVK	14804	NM_001170954	239559	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding
diff_RLAGL_Vector_cond1_227	chr1	66174951	66175377	+	8.10759	NA	promoter-TSS (NM_001039934)	promoter-TSS (NM_001039934)	-165	NM_001039934	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_3196	chr14	68455641	68455911	+	8.10602	NA	Intergenic	Intergenic	77913	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding
diff_RLAGL_Vector_cond1_1768	chr11	78183514	78183760	+	8.10494	NA	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	-53	NM_207523	268449	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding
diff_RLAGL_Vector_cond1_2923	chr13	109822383	109822634	+	8.10470	NA	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-81301	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
diff_RLAGL_Vector_cond1_8001	chr5	131814174	131814412	+	8.10451	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	-65976	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
diff_RLAGL_Vector_cond1_541	chr1	143776941	143777423	+	8.10340	NA	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	-96	NM_019562	56207	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding
diff_RLAGL_Vector_cond1_7088	chr4	83324193	83324537	+	8.10299	NA	promoter-TSS (NM_027238)	promoter-TSS (NM_027238)	-176	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding
diff_RLAGL_Vector_cond1_4868	chr18	47368727	47369193	+	8.10097	NA	promoter-TSS (NM_001311097)	promoter-TSS (NM_001311097)	-90	NM_001311097	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding
diff_RLAGL_Vector_cond1_5726	chr2	117185684	117186025	+	8.10095	NA	TTS (NR_030440)	TTS (NR_030440)	727	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA
diff_RLAGL_Vector_cond1_9056	chr7	73196932	73197262	+	8.10060	NA	Intergenic	Intergenic	-95029	NR_046024	625243	Mm.261798	NR_046024		Gm6567	-	predicted gene 6567	ncRNA
diff_RLAGL_Vector_cond1_9705	chr8	90737348	90737698	+	8.09899	NA	Intergenic	Intergenic	-91312	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding
diff_RLAGL_Vector_cond1_10404	chrX	16288148	16288493	+	8.09881	NA	Intergenic	Intergenic	-234549	NM_025738	66742	Mm.45302	NM_025738	ENSMUSG00000023257	Cypt1	4931420D14Rik|Ckt1r3|Cypt5|Cypt6|TISP55	cysteine-rich perinuclear theca 1	protein-coding
diff_RLAGL_Vector_cond1_5073	chr19	8871483	8871740	+	8.09830	NA	promoter-TSS (NM_146093)	promoter-TSS (NM_146093)	52	NM_146093	225896	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529	UBX domain protein 1	protein-coding
diff_RLAGL_Vector_cond1_8998	chr7	58437328	58437755	+	8.09678	NA	Intergenic	RLTR18B|LTR|ERVK	-220661	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding
diff_RLAGL_Vector_cond1_6178	chr3	16025084	16025325	+	8.09632	NA	Intergenic	IAPEY4_LTR|LTR|ERVK	-18872	NM_001081687	381484	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding
diff_RLAGL_Vector_cond1_8175	chr6	12813773	12814232	+	8.09550	NA	Intergenic	RLTR1F_Mm|LTR|ERVK	-64749	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
diff_RLAGL_Vector_cond1_9350	chr8	5514044	5514510	+	8.09414	NA	Intergenic	Intergenic	-409045	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
diff_RLAGL_Vector_cond1_9194	chr7	112823811	112824094	+	8.09379	NA	intron (NM_001166584, intron 2 of 13)	intron (NM_001166584, intron 2 of 13)	64568	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding
diff_RLAGL_Vector_cond1_5061	chr19	6007046	6007301	+	8.09136	NA	intron (NM_007600, intron 10 of 21)	intron (NM_007600, intron 10 of 21)	-5447	NR_045783	100502985	Mm.465338	NR_045783	ENSMUSG00000097404	Gm10814	ENSMUSG00000075230	predicted gene 10814	ncRNA
diff_RLAGL_Vector_cond1_6629	chr3	134033796	134034147	+	8.08742	NA	Intergenic	Intergenic	-202524	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding
diff_RLAGL_Vector_cond1_4506	chr17	56325513	56325861	+	8.08606	NA	promoter-TSS (NM_172132)	promoter-TSS (NM_172132)	-363	NM_172132	193796	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b|mKIAA0876	lysine (K)-specific demethylase 4B	protein-coding
diff_RLAGL_Vector_cond1_2781	chr13	67779574	67780001	+	8.08562	NA	promoter-TSS (NM_028402)	promoter-TSS (NM_028402)	94	NM_028402	72958	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding
diff_RLAGL_Vector_cond1_1622	chr11	43643069	43643399	+	8.08352	NA	Intergenic	Intergenic	-38764	NM_027557	70802	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding
diff_RLAGL_Vector_cond1_5607	chr2	85072119	85072323	+	8.08329	NA	intron (NM_001081260, intron 11 of 11)	intron (NM_001081260, intron 11 of 11)	14240	NR_040504	74687	Mm.66996	NR_040504	ENSMUSG00000086969	4930443O20Rik	-	RIKEN cDNA 4930443O20 gene	ncRNA
diff_RLAGL_Vector_cond1_919	chr10	21827313	21827520	+	8.08296	NA	Intergenic	Intergenic	-54768	NM_001161845	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding
diff_RLAGL_Vector_cond1_9779	chr8	111748290	111748609	+	8.08267	NA	Intergenic	Intergenic	-4600	NM_009954	12927	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding
diff_RLAGL_Vector_cond1_1671	chr11	58613381	58613624	+	8.08108	NA	promoter-TSS (NM_144544)	promoter-TSS (NM_144544)	-10	NM_144544	78354	Mm.58038	NM_144544	ENSMUSG00000037145	2210407C18Rik	Ep1	RIKEN cDNA 2210407C18 gene	protein-coding
diff_RLAGL_Vector_cond1_9020	chr7	65469666	65469962	+	8.08102	NA	Intergenic	Intergenic	-98570	NM_001163574	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding
diff_RLAGL_Vector_cond1_7515	chr5	4821569	4821812	+	8.07953	NA	intron (NM_001310448, intron 13 of 13)	intron (NM_001310448, intron 13 of 13)	-63474	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4696	chr17	91955116	91955419	+	8.07837	NA	Intergenic	Intergenic	-862465	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding
diff_RLAGL_Vector_cond1_6403	chr3	77849732	77849949	+	8.07780	NA	Intergenic	Intergenic	1295047	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
diff_RLAGL_Vector_cond1_10252	chr9	100643089	100643387	+	8.07617	NA	promoter-TSS (NM_009282)	promoter-TSS (NM_009282)	-385	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding
diff_RLAGL_Vector_cond1_8374	chr6	64862976	64863202	+	8.07612	NA	Intergenic	Intergenic	133943	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_10450	chrX	67821146	67821489	+	8.07539	NA	Intergenic	Intergenic	100133	NM_025763	66780	Mm.79193	NM_025763	ENSMUSG00000025288	4933436I01Rik	-	RIKEN cDNA 4933436I01 gene	protein-coding
diff_RLAGL_Vector_cond1_4208	chr16	94526726	94526952	+	8.07290	NA	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	-210	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding
diff_RLAGL_Vector_cond1_6515	chr3	105894613	105894913	+	8.06756	NA	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-9658	NM_009631	11542	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding
diff_RLAGL_Vector_cond1_7559	chr5	17863212	17863413	+	8.06725	NA	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-13520	NM_001159556	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding
diff_RLAGL_Vector_cond1_9257	chr7	130708976	130709279	+	8.06427	NA	intron (NM_021314, intron 1 of 17)	intron (NM_021314, intron 1 of 17)	16571	NM_021314	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding
diff_RLAGL_Vector_cond1_8492	chr6	94881109	94881514	+	8.06321	NA	Intergenic	Intergenic	-62523	NR_040761	78773	Mm.67065	NR_040761	ENSMUSG00000108187	4930511E03Rik	-	RIKEN cDNA 4930511E03 gene	ncRNA
diff_RLAGL_Vector_cond1_9117	chr7	89773367	89773770	+	8.06291	NA	intron (NM_181407, intron 3 of 13)	intron (NM_181407, intron 3 of 13)	130061	NM_001162979	70884	Mm.252823	NM_001162979	ENSMUSG00000039391	Ccdc81	4921513D09Rik	coiled-coil domain containing 81	protein-coding
diff_RLAGL_Vector_cond1_7373	chr4	138966835	138967411	+	8.06044	NA	promoter-TSS (NM_025786)	promoter-TSS (NM_025786)	11	NM_025786	66825	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding
diff_RLAGL_Vector_cond1_8663	chr6	132979280	132979514	+	8.06032	NA	TTS (NM_207017)	TTS (NM_207017)	1568	NM_207017	387343	Mm.377905	NM_207017	ENSMUSG00000062528	Tas2r109	T2R09|Tas2r9|mGR09|mt2r62	taste receptor, type 2, member 109	protein-coding
diff_RLAGL_Vector_cond1_4287	chr17	17293938	17294432	+	8.05983	NA	Intergenic	Intergenic	-80147	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2 (yeast)	protein-coding
diff_RLAGL_Vector_cond1_4466	chr17	48723336	48723665	+	8.05933	NA	Intergenic	Intergenic	-209082	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_6857	chr4	17992944	17993203	+	8.05744	NA	intron (NM_019724, intron 2 of 9)	intron (NM_019724, intron 2 of 9)	139591	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
diff_RLAGL_Vector_cond1_9218	chr7	123097943	123098242	+	8.05666	NA	Intergenic	Intergenic	-25793	NM_144925	233833	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding
diff_RLAGL_Vector_cond1_5867	chr2	142629623	142630473	+	8.05355	NA	intron (NM_001081133, intron 25 of 25)	intron (NM_001081133, intron 25 of 25)	271416	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
diff_RLAGL_Vector_cond1_527	chr1	138928651	138929085	+	8.05177	NA	Intergenic	Intergenic	-34841	NM_001166501	329260	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_8473	chr6	90919761	90920363	+	8.05151	NA	Intergenic	Intergenic	-109939	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding
diff_RLAGL_Vector_cond1_9966	chr9	23083607	23083849	+	8.05149	NA	Intergenic	Intergenic	-139348	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding
diff_RLAGL_Vector_cond1_2757	chr13	65176249	65176474	+	8.05102	NA	TTS (NM_175290)	TTS (NM_175290)	24135	NM_146819	258816	Mm.377705	NM_146819	ENSMUSG00000049806	Olfr466	MOR209-1	olfactory receptor 466	protein-coding
diff_RLAGL_Vector_cond1_6401	chr3	75952405	75953047	+	8.05014	NA	intron (NM_001291069, intron 1 of 15)	MIRb|SINE|MIR	4223	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding
diff_RLAGL_Vector_cond1_4822	chr18	37143381	37144004	+	8.04967	NA	promoter-TSS (NM_001003672)	promoter-TSS (NM_001003672)	-277	NM_001003672	353237	Mm.308500	NM_001003672	ENSMUSG00000007440	Pcdhac2	CNRc2	protocadherin alpha subfamily C, 2	protein-coding
diff_RLAGL_Vector_cond1_1236	chr10	88885705	88886271	+	8.04938	NA	promoter-TSS (NM_145423)	promoter-TSS (NM_145423)	-4	NM_145423	216225	Mm.77381	NM_145423	ENSMUSG00000020062	Slc5a8	Ait|SMCT	solute carrier family 5 (iodide transporter), member 8	protein-coding
diff_RLAGL_Vector_cond1_8449	chr6	87672110	87672382	+	8.04822	NA	promoter-TSS (NM_001170489)	promoter-TSS (NM_001170489)	-78	NM_024251	72103	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding
diff_RLAGL_Vector_cond1_10465	chrX	77050825	77051061	+	8.04782	NA	Intergenic	Intergenic	424993	NR_035475	100316834		NR_035475	ENSMUSG00000088980	Mir669m-2	mmu-mir-669m-2	microRNA 669m-2	ncRNA
diff_RLAGL_Vector_cond1_7056	chr4	74201356	74201753	+	8.04491	NA	intron (NM_001163732, intron 14 of 14)	intron (NM_001163732, intron 14 of 14)	-40943	NM_001172095	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding
diff_RLAGL_Vector_cond1_1880	chr11	100738039	100738273	+	8.04420	NA	promoter-TSS (NM_024456)	promoter-TSS (NM_024456)	59	NM_024456	19345	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_7945	chr5	115431125	115431379	+	8.04400	NA	intron (NM_008629, intron 4 of 14)	intron (NM_008629, intron 4 of 14)	1567	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_1895	chr11	102604028	102604515	+	8.04358	NA	promoter-TSS (NM_020510)	promoter-TSS (NM_020510)	-160	NM_020510	57265	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3101	chr14	44850731	44850954	+	8.04279	NA	TTS (NM_008962)	TTS (NM_008962)	8533	NM_008962	19214	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding
diff_RLAGL_Vector_cond1_6535	chr3	109564486	109564713	+	8.04266	NA	intron (NM_020505, intron 17 of 26)	intron (NM_020505, intron 17 of 26)	-9408	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding
diff_RLAGL_Vector_cond1_4869	chr18	47370274	47370512	+	8.04182	NA	Intergenic	Intergenic	-1523	NM_001311097	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding
diff_RLAGL_Vector_cond1_3100	chr14	43924881	43925751	+	8.04147	NA	Intergenic	IAPEY4_LTR|LTR|ERVK	-1948	NM_053112	93725	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding
diff_RLAGL_Vector_cond1_8829	chr7	13278234	13278835	+	8.04137	NA	promoter-TSS (NM_001083188)	promoter-TSS (NM_001083188)	187	NM_177312	321008	Mm.458832	NM_177312	ENSMUSG00000070814	6330408A02Rik	-	RIKEN cDNA 6330408A02 gene	protein-coding
diff_RLAGL_Vector_cond1_4127	chr16	77469409	77469771	+	8.04097	NA	intron (NR_015543, intron 3 of 4)	intron (NR_015543, intron 3 of 4)	-129346	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA
diff_RLAGL_Vector_cond1_10619	chrX	169106351	169106697	+	8.03909	NA	intron (NM_178754, intron 1 of 12)	intron (NM_178754, intron 1 of 12)	-6354	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding
diff_RLAGL_Vector_cond1_5658	chr2	102815272	102815561	+	8.03525	NA	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	86249	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding
diff_RLAGL_Vector_cond1_6518	chr3	106074891	106075267	+	8.03416	NA	Intergenic	Intergenic	-38303	NM_023186	81600	Mm.46418	NM_023186	ENSMUSG00000062778	Chia1	2200003E03Rik|AMCase|Chia|YNL	chitinase, acidic 1	protein-coding
diff_RLAGL_Vector_cond1_4076	chr16	63783650	63783904	+	8.03389	NA	intron (NM_010140, intron 2 of 16)	intron (NM_010140, intron 2 of 16)	80380	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
diff_RLAGL_Vector_cond1_3759	chr15	90318541	90318755	+	8.03236	NA	Intergenic	L1Md_F3|LINE|L1	94288	NR_106106	102466838		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA
diff_RLAGL_Vector_cond1_6270	chr3	41742444	41742706	+	8.03150	NA	promoter-TSS (NM_027271)	promoter-TSS (NM_027271)	-40	NM_001291048	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
diff_RLAGL_Vector_cond1_10536	chrX	129740883	129741114	+	8.03006	NA	Intergenic	Intergenic	-8744	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding
diff_RLAGL_Vector_cond1_3659	chr15	66980410	66980790	+	8.02989	NA	Intergenic	Intergenic	-10959	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding
diff_RLAGL_Vector_cond1_9889	chr9	5574946	5575409	+	8.02887	NA	Intergenic	MTD|LTR|ERVL-MaLR	229701	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding
diff_RLAGL_Vector_cond1_5194	chr19	47919206	47919422	+	8.02868	NA	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	-15	NM_001001738	414801	Mm.29457	NM_001001738		Itprip	4833424O12Rik|DANGER|mKIAA1754	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding
diff_RLAGL_Vector_cond1_5053	chr19	4958046	4958373	+	8.02828	NA	Intergenic	IAPLTR2_Mm|LTR|ERVK	-4097	NM_025553	66419	Mm.28494	NM_025553	ENSMUSG00000024902	Mrpl11	2410001P07Rik|L11mt	mitochondrial ribosomal protein L11	protein-coding
diff_RLAGL_Vector_cond1_9009	chr7	63753441	63753762	+	8.02693	NA	intron (NM_130880, intron 11 of 13)	intron (NM_130880, intron 11 of 13)	-163256	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding
diff_RLAGL_Vector_cond1_10586	chrX	153832100	153832539	+	8.02668	NA	promoter-TSS (NM_001005370)	promoter-TSS (NM_001005370)	26	NM_001005370	278240	Mm.293363	NM_001005370	ENSMUSG00000046550	Spin2c	BC068162|SPIN-2C|Spin2	spindlin family, member 2C	protein-coding
diff_RLAGL_Vector_cond1_4926	chr18	66002504	66002825	+	8.02498	NA	promoter-TSS (NM_001172062)	promoter-TSS (NM_001172062)	-29	NM_001172062	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding
diff_RLAGL_Vector_cond1_9686	chr8	86418703	86418977	+	8.02421	NA	Intergenic	Intergenic	147750	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding
diff_RLAGL_Vector_cond1_2104	chr12	17114034	17114323	+	8.02264	NA	Intergenic	Intergenic	62710	NM_201531	382571	Mm.40173	NM_201531	ENSMUSG00000051726	Kcnf1	Gm1182|Kv5.1	potassium voltage-gated channel, subfamily F, member 1	protein-coding
diff_RLAGL_Vector_cond1_8502	chr6	97472986	97473193	+	8.02255	NA	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	144568	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013	FERM domain containing 4B	protein-coding
diff_RLAGL_Vector_cond1_5355	chr2	25460560	25461175	+	8.02229	NA	exon (NM_153557, exon 1 of 7)	exon (NM_153557, exon 1 of 7)	227	NM_153557	227622	Mm.261780	NM_153557	ENSMUSG00000047617	BC029214	D930050G13Rik|Paxx	cDNA sequence BC029214	protein-coding
diff_RLAGL_Vector_cond1_7223	chr4	114542218	114542456	+	8.02206	NA	intron (NM_001085549, intron 2 of 6)	intron (NM_001085549, intron 2 of 6)	135613	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding
diff_RLAGL_Vector_cond1_7346	chr4	134397123	134397443	+	8.02202	NA	promoter-TSS (NM_001285872)	promoter-TSS (NM_001285872)	-188	NM_001285872	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding
diff_RLAGL_Vector_cond1_6669	chr3	144570231	144570745	+	8.02008	NA	promoter-TSS (NM_011828)	promoter-TSS (NM_011828)	61	NM_053102	93684	Mm.29812	NM_053102	ENSMUSG00000037072	Sep15	9430015P09Rik	selenoprotein	protein-coding
diff_RLAGL_Vector_cond1_4721	chr18	5989625	5990285	+	8.01934	NA	Intergenic	Intergenic	146143	NM_001039692	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding
diff_RLAGL_Vector_cond1_7439	chr4	148151852	148152109	+	8.01826	NA	promoter-TSS (NM_001163704)	promoter-TSS (NM_001163704)	49	NM_001163706	50762	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding
diff_RLAGL_Vector_cond1_388	chr1	99497566	99497793	+	8.01660	NA	Intergenic	Intergenic	-275086	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding
diff_RLAGL_Vector_cond1_1644	chr11	51264445	51264747	+	8.01425	NA	intron (NM_001304744, intron 1 of 10)	intron (NM_001304744, intron 1 of 10)	1482	NM_007714	12750	Mm.239354	NM_007714	ENSMUSG00000020385	Clk4	AI987988|C85119	CDC like kinase 4	protein-coding
diff_RLAGL_Vector_cond1_2550	chr13	12552866	12553126	+	8.01217	NA	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-12887	NM_026184	67475	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_570	chr1	151296445	151297036	+	8.01166	NA	Intergenic	RLTR12D|LTR|ERVK	-47758	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding
diff_RLAGL_Vector_cond1_2924	chr13	109837427	109837734	+	8.01120	NA	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-66229	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
diff_RLAGL_Vector_cond1_8208	chr6	21910895	21911130	+	8.00946	NA	Intergenic	Intergenic	-38559	NM_001311061	71777	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding
diff_RLAGL_Vector_cond1_8968	chr7	47901348	47901815	+	8.00441	NA	Intergenic	RLTR13A3|LTR|ERVK	80715	NM_153524	235854	Mm.207065	NM_153524	ENSMUSG00000067173	Mrgpra4	Mgrg10|MrgA4	MAS-related GPR, member A4	protein-coding
diff_RLAGL_Vector_cond1_9631	chr8	76474758	76475110	+	8.00351	NA	Intergenic	Intergenic	425239	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
diff_RLAGL_Vector_cond1_1544	chr11	22438452	22438867	+	8.00346	NA	Intergenic	Intergenic	-73624	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding
diff_RLAGL_Vector_cond1_4912	chr18	62783259	62783493	+	8.00289	NA	Intergenic	Intergenic	-27029	NR_037693	78449	Mm.262195	NR_037693	ENSMUSG00000041789	2700046A07Rik	A330042I05Rik	RIKEN cDNA 2700046A07 gene	ncRNA
diff_RLAGL_Vector_cond1_5348	chr2	24048812	24049107	+	8.00269	NA	intron (NM_080462, intron 1 of 6)	intron (NM_080462, intron 1 of 6)	420	NM_080462	140483	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding
diff_RLAGL_Vector_cond1_2186	chr12	36915426	36915930	+	8.00117	NA	Intergenic	Intergenic	99473	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA
diff_RLAGL_Vector_cond1_7132	chr4	95161250	95161626	+	7.99998	NA	Intergenic	CpG	-109216	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_5877	chr2	143890098	143890322	+	7.99989	NA	Intergenic	Intergenic	-25121	NM_019771	56431	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding
diff_RLAGL_Vector_cond1_9034	chr7	67950877	67951190	+	7.99831	NA	Intergenic	CpG	-1224	NM_010513	16001	Mm.275742	NM_010513		Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding
diff_RLAGL_Vector_cond1_710	chr1	177441838	177442221	+	7.99783	NA	Intergenic	CpG	-2632	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
diff_RLAGL_Vector_cond1_3641	chr15	64312546	64312832	+	7.99528	NA	promoter-TSS (NM_001276463)	promoter-TSS (NM_001276463)	-16	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding
diff_RLAGL_Vector_cond1_7878	chr5	103754072	103754299	+	7.99500	NA	promoter-TSS (NM_133919)	promoter-TSS (NM_133919)	23	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding
diff_RLAGL_Vector_cond1_4326	chr17	24527747	24528336	+	7.99396	NA	promoter-TSS (NM_001172114)	promoter-TSS (NM_001172114)	-103	NM_153792	224619	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding
diff_RLAGL_Vector_cond1_9575	chr8	62684238	62684584	+	7.99381	NA	Intergenic	Intergenic	-266821	NM_001252620	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding
diff_RLAGL_Vector_cond1_3475	chr15	16566949	16567157	+	7.99211	NA	Intergenic	Lx3B|LINE|L1	-211048	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
diff_RLAGL_Vector_cond1_3403	chr14	124264790	124265027	+	7.99088	NA	intron (NM_207667, intron 1 of 4)	intron (NM_207667, intron 1 of 4)	-72362	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding
diff_RLAGL_Vector_cond1_6747	chr3	154695602	154695837	+	7.98926	NA	Intergenic	Intergenic	-15414	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
diff_RLAGL_Vector_cond1_2360	chr12	90737920	90738316	+	7.98712	NA	exon (NM_010050, exon 1 of 2)	exon (NM_010050, exon 1 of 2)	320	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding
diff_RLAGL_Vector_cond1_4103	chr16	72383636	72383919	+	7.98685	NA	Intergenic	Intergenic	-149450	NR_131115	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA
diff_RLAGL_Vector_cond1_7229	chr4	114999805	115000288	+	7.98644	NA	promoter-TSS (NM_009185)	promoter-TSS (NM_009185)	-72	NM_001304553	20460	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding
diff_RLAGL_Vector_cond1_2565	chr13	14630019	14630365	+	7.98560	NA	promoter-TSS (NM_134067)	promoter-TSS (NM_134067)	-53	NM_001104646	105351	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding
diff_RLAGL_Vector_cond1_1322	chr10	108113431	108113687	+	7.98555	NA	Intergenic	Intergenic	-48841	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding
diff_RLAGL_Vector_cond1_9082	chr7	78913951	78914326	+	7.98421	NA	promoter-TSS (NM_001113527)	promoter-TSS (NM_001113527)	-97	NM_001113527	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding
diff_RLAGL_Vector_cond1_3337	chr14	106135512	106135758	+	7.98379	NA	non-coding (NR_073203, exon 2 of 2)	non-coding (NR_073203, exon 2 of 2)	29437	NM_198601	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding
diff_RLAGL_Vector_cond1_10324	chr9	116208152	116208764	+	7.98273	NA	Intergenic	Intergenic	-33095	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding
diff_RLAGL_Vector_cond1_506	chr1	135374786	135374993	+	7.98127	NA	exon (NM_175259, exon 1 of 5)	exon (NM_175259, exon 1 of 5)	174	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding
diff_RLAGL_Vector_cond1_6074	chr2	172913828	172914253	+	7.98096	NA	intron (NM_007557, intron 2 of 6)	intron (NM_007557, intron 2 of 6)	26281	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding
diff_RLAGL_Vector_cond1_8599	chr6	121064354	121064716	+	7.98024	NA	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	17092	NM_153396	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_6601	chr3	129725264	129725508	+	7.98015	NA	promoter-TSS (NM_001310737)	promoter-TSS (NM_001310737)	-300	NM_001310737	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
diff_RLAGL_Vector_cond1_7556	chr5	17574468	17574855	+	7.97933	NA	promoter-TSS (NM_013657)	promoter-TSS (NM_013657)	-155	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding
diff_RLAGL_Vector_cond1_848	chr10	5194494	5194932	+	7.97708	NA	promoter-TSS (NM_001079686)	promoter-TSS (NM_001079686)	-6	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756	spectrin repeat containing, nuclear envelope 1	protein-coding
diff_RLAGL_Vector_cond1_3832	chr15	102235409	102235857	+	7.97689	NA	3' UTR (NM_011244, exon 10 of 10)	3' UTR (NM_011244, exon 10 of 10)	-3698	NM_013566	16421	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding
diff_RLAGL_Vector_cond1_5799	chr2	133738827	133739523	+	7.97685	NA	Intergenic	Intergenic	174467	NR_037273	100526500		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA
diff_RLAGL_Vector_cond1_1085	chr10	61491954	61492389	+	7.97654	NA	intron (NM_153542, intron 2 of 4)	intron (NM_153542, intron 2 of 4)	16338	NM_153542	216011	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding
diff_RLAGL_Vector_cond1_10239	chr9	96416103	96416349	+	7.97547	NA	Intergenic	Intergenic	-51927	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding
diff_RLAGL_Vector_cond1_3178	chr14	63943514	63943889	+	7.97246	NA	promoter-TSS (NM_011446)	promoter-TSS (NM_011446)	-5	NM_011446	20680	Mm.42162	NM_011446	ENSMUSG00000063060	Sox7	-	SRY (sex determining region Y)-box 7	protein-coding
diff_RLAGL_Vector_cond1_10114	chr9	61618447	61618819	+	7.97117	NA	Intergenic	Intergenic	246267	NM_009389	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3, homolog of Drosophila E(spl)	protein-coding
diff_RLAGL_Vector_cond1_5805	chr2	134643869	134644353	+	7.97084	NA	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	10	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding
diff_RLAGL_Vector_cond1_2904	chr13	105054180	105054904	+	7.96982	NA	5' UTR (NM_029879, exon 1 of 6)	5' UTR (NM_029879, exon 1 of 6)	388	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding
diff_RLAGL_Vector_cond1_9329	chr7	144984381	144984691	+	7.96959	NA	Intergenic	Intergenic	-44611	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding
diff_RLAGL_Vector_cond1_7584	chr5	24392654	24393024	+	7.96758	NA	promoter-TSS (NM_001002897)	promoter-TSS (NM_001002897)	-696	NM_001002897	213948	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding
diff_RLAGL_Vector_cond1_7533	chr5	8996602	8996880	+	7.96689	NA	intron (NM_023733, intron 1 of 17)	intron (NM_023733, intron 1 of 17)	405	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding
diff_RLAGL_Vector_cond1_3442	chr15	8445392	8445603	+	7.96668	NA	Intergenic	CpG-4777	-1034	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_89	chr1	23228516	23228845	+	7.96527	NA	Intergenic	Intergenic	-43589	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA
diff_RLAGL_Vector_cond1_3550	chr15	43477472	43477737	+	7.96492	NA	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	375	NM_025736	66736	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding
diff_RLAGL_Vector_cond1_10262	chr9	103899320	103899615	+	7.96461	NA	Intergenic	Intergenic	-103077	NM_028721	74025	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding
diff_RLAGL_Vector_cond1_5057	chr19	5815972	5816221	+	7.96429	NA	Intergenic	Intergenic	-13425	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA
diff_RLAGL_Vector_cond1_1379	chr10	120013857	120014103	+	7.96184	NA	intron (NM_001277293, intron 14 of 24)	intron (NM_001277293, intron 14 of 24)	21058	NM_001277295	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_979	chr10	33904833	33905064	+	7.96182	NA	promoter-TSS (NM_001162957)	promoter-TSS (NM_001162957)	-163	NM_001162957	212892	Mm.131949	NM_001162957	ENSMUSG00000039552	Rsph4a	A230081C05|Rshl3	radial spoke head 4 homolog A (Chlamydomonas)	protein-coding
diff_RLAGL_Vector_cond1_5143	chr19	32523840	32524123	+	7.96180	NA	Intergenic	Intergenic	38212	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding
diff_RLAGL_Vector_cond1_8522	chr6	101214886	101215582	+	7.96112	NA	intron (NM_018884, intron 3 of 9)	intron (NM_018884, intron 3 of 9)	162663	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
diff_RLAGL_Vector_cond1_5724	chr2	115911980	115912508	+	7.96111	NA	intron (NM_001159567, intron 9 of 12)	intron (NM_001159567, intron 9 of 12)	152377	NM_001159570	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_6133	chr3	3503560	3503806	+	7.95888	NA	Intergenic	Intergenic	-4347	NM_013920	30942	Mm.330897	NM_013920		Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding
diff_RLAGL_Vector_cond1_8779	chr6	148444110	148444500	+	7.95827	NA	promoter-TSS (NM_198967)	promoter-TSS (NM_198967)	47	NM_198967	387314	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding
diff_RLAGL_Vector_cond1_3796	chr15	96657694	96658346	+	7.95582	NA	Intergenic	Intergenic	-15107	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding
diff_RLAGL_Vector_cond1_1303	chr10	106023610	106023867	+	7.95561	NA	Intergenic	Intergenic	182259	NM_025602	52713	Mm.339224	NM_025602		Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding
diff_RLAGL_Vector_cond1_3942	chr16	33989200	33989474	+	7.95483	NA	intron (NM_177357, intron 54 of 59)	L1MB4|LINE|L1	-22334	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding
diff_RLAGL_Vector_cond1_8305	chr6	47813200	47813867	+	7.95433	NA	promoter-TSS (NM_009787)	promoter-TSS (NM_009787)	-21	NM_009787	12304	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding
diff_RLAGL_Vector_cond1_3491	chr15	25932500	25933079	+	7.95297	NA	promoter-TSS (NM_001277318)	promoter-TSS (NM_001277318)	-763	NM_001277318	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding
diff_RLAGL_Vector_cond1_9153	chr7	101377723	101378151	+	7.95244	NA	promoter-TSS (NM_001040112)	promoter-TSS (NM_001040112)	-185	NM_001040112	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding
diff_RLAGL_Vector_cond1_4025	chr16	52242139	52242521	+	7.95152	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	210667	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_4419	chr17	40934498	40934789	+	7.94988	NA	promoter-TSS (NM_008650)	promoter-TSS (NM_008650)	-42	NM_008650	17850	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding
diff_RLAGL_Vector_cond1_3592	chr15	53901670	53902321	+	7.94964	NA	intron (NM_177225, intron 1 of 4)	intron (NM_177225, intron 1 of 4)	441	NM_177225	320679	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding
diff_RLAGL_Vector_cond1_6908	chr4	31963977	31964192	+	7.94783	NA	promoter-TSS (NM_172688)	promoter-TSS (NM_172688)	-23	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
diff_RLAGL_Vector_cond1_6226	chr3	28304002	28304207	+	7.94780	NA	intron (NM_001163007, intron 1 of 31)	intron (NM_001163007, intron 1 of 31)	40890	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding
diff_RLAGL_Vector_cond1_8726	chr6	141302925	141303229	+	7.94648	NA	intron (NM_018779, intron 1 of 15)	intron (NM_018779, intron 1 of 15)	-37476	NR_033555	100093700	Mm.483778	NR_033555	ENSMUSG00000107456	Gm10400	ENSMUSG00000072690	predicted gene 10400	ncRNA
diff_RLAGL_Vector_cond1_3609	chr15	57892473	57892736	+	7.94629	NA	promoter-TSS (NM_024207)	promoter-TSS (NM_024207)	-186	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding
diff_RLAGL_Vector_cond1_442	chr1	119053511	119053804	+	7.94578	NA	promoter-TSS (NM_001081125)	promoter-TSS (NM_001081125)	-38	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding
diff_RLAGL_Vector_cond1_6522	chr3	107233595	107233824	+	7.94191	NA	exon (NM_001256174, exon 3 of 3)	exon (NM_001256174, exon 3 of 3)	3095	NM_001256174	319929	Mm.30453	NM_001256174		A630076J17Rik	-	RIKEN cDNA A630076J17 gene	protein-coding
diff_RLAGL_Vector_cond1_2	chr1	3671003	3671837	+	7.94060	NA	promoter-TSS (NM_001011874)	promoter-TSS (NM_001011874)	78	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X Kell blood group precursor related family member 4	protein-coding
diff_RLAGL_Vector_cond1_3047	chr14	23974489	23974768	+	7.93934	NA	intron (NM_001253367, intron 1 of 28)	intron (NM_001253367, intron 1 of 28)	29577	NM_001253365	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
diff_RLAGL_Vector_cond1_588	chr1	154786239	154786578	+	7.93844	NA	Intergenic	Intergenic	-60488	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding
diff_RLAGL_Vector_cond1_5732	chr2	118110297	118110815	+	7.93773	NA	intron (NR_126479, intron 1 of 9)	intron (NR_126479, intron 1 of 9)	646	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA
diff_RLAGL_Vector_cond1_2729	chr13	62129735	62130062	+	7.93606	NA	promoter-TSS (NM_001039239)	promoter-TSS (NM_001039239)	8	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding
diff_RLAGL_Vector_cond1_3	chr1	4538304	4538644	+	7.93602	NA	Intergenic	L2|LINE|L2	-41120	NM_011441	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding
diff_RLAGL_Vector_cond1_9972	chr9	25151166	25151957	+	7.93362	NA	5' UTR (NM_020586, exon 1 of 8)	5' UTR (NM_020586, exon 1 of 8)	220	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding
diff_RLAGL_Vector_cond1_5289	chr2	13542753	13542967	+	7.93346	NA	intron (NM_010067, intron 1 of 10)	L1MB4|LINE|L1	1804	NM_010067	13434	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_9979	chr9	27030541	27030887	+	7.93339	NA	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	539	NM_178113	78658	Mm.251777	NM_178113	ENSMUSG00000035024	Ncapd3	2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056	non-SMC condensin II complex, subunit D3	protein-coding
diff_RLAGL_Vector_cond1_8104	chr5	148276785	148277017	+	7.93234	NA	intron (NM_029920, intron 7 of 14)	intron (NM_029920, intron 7 of 14)	115914	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding
diff_RLAGL_Vector_cond1_10282	chr9	107399621	107399911	+	7.93152	NA	promoter-TSS (NM_001174047)	promoter-TSS (NM_001174047)	-114	NM_020263	56808	Mm.273084	NM_020263	ENSMUSG00000010066	Cacna2d2	Cacna2d|a2d2|du|mKIAA0558|td|torpid	calcium channel, voltage-dependent, alpha 2/delta subunit 2	protein-coding
diff_RLAGL_Vector_cond1_3054	chr14	25397049	25397486	+	7.93008	NA	Intergenic	Intergenic	-61918	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding
diff_RLAGL_Vector_cond1_1130	chr10	76531435	76531647	+	7.93005	NA	promoter-TSS (NM_146006)	promoter-TSS (NM_146006)	-64	NM_146006	16987	Mm.55075	NM_146006		Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding
diff_RLAGL_Vector_cond1_3190	chr14	67608342	67608578	+	7.92942	NA	Intergenic	Intergenic	107150	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding
diff_RLAGL_Vector_cond1_7205	chr4	111451366	111451880	+	7.92922	NA	intron (NR_033793, intron 4 of 5)	intron (NR_033793, intron 4 of 5)	36617	NM_026279	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_5504	chr2	61592818	61593049	+	7.92772	NA	promoter-TSS (NM_001164072)	promoter-TSS (NM_001164072)	-164	NM_001164072	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding
diff_RLAGL_Vector_cond1_2097	chr12	15320651	15321172	+	7.92742	NA	Intergenic	Intergenic	-270522	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
diff_RLAGL_Vector_cond1_10267	chr9	104407792	104408273	+	7.92700	NA	Intergenic	Intergenic	-18081	NR_035516	100316725		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA
diff_RLAGL_Vector_cond1_1819	chr11	89100514	89100736	+	7.92675	NA	Intergenic	Intergenic	26784	NM_001033266	217071	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding
diff_RLAGL_Vector_cond1_10606	chrX	162967505	162967775	+	7.92578	NA	intron (NM_018737, intron 13 of 18)	intron (NM_018737, intron 13 of 18)	-3041	NM_009789	12309	Mm.6891	NM_009789	ENSMUSG00000040808	S100g	AU042539|CABP1|CaBP-D9K|Cabp9k|Calb3	S100 calcium binding protein G	protein-coding
diff_RLAGL_Vector_cond1_2614	chr13	29502888	29503177	+	7.92531	NA	intron (NR_131896, intron 11 of 16)	intron (NR_131896, intron 11 of 16)	352641	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
diff_RLAGL_Vector_cond1_646	chr1	166843414	166843864	+	7.92510	NA	Intergenic	Intergenic	156091	NR_037988	100503962	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA
diff_RLAGL_Vector_cond1_4022	chr16	52118364	52118591	+	7.92312	NA	intron (NM_001033238, intron 4 of 17)	RLTR34C_MM|LTR|ERVK	86928	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
diff_RLAGL_Vector_cond1_4098	chr16	69119707	69119983	+	7.92259	NA	Intergenic	Intergenic	680536	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA
diff_RLAGL_Vector_cond1_7425	chr4	145360996	145361350	+	7.92053	NA	Intergenic	ERVB4_1B-LTR_MM|LTR|ERVK	-46026	NM_009401	21941	Mm.12810	NM_009401		Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding
diff_RLAGL_Vector_cond1_4852	chr18	42961244	42961463	+	7.91934	NA	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	-61847	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
diff_RLAGL_Vector_cond1_9863	chr8	127908507	127908805	+	7.91926	NA	Intergenic	Intergenic	369569	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA
diff_RLAGL_Vector_cond1_2257	chr12	57211890	57212154	+	7.91751	NA	Intergenic	Intergenic	-14550	NM_172577	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding
diff_RLAGL_Vector_cond1_3472	chr15	12739642	12740182	+	7.91435	NA	Intergenic	CpG	84745	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding
diff_RLAGL_Vector_cond1_4413	chr17	37629743	37629943	+	7.91244	NA	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-5210	NM_146632	258625	Mm.377599	NM_146632	ENSMUSG00000061336	Olfr116	MOR218-2	olfactory receptor 116	protein-coding
diff_RLAGL_Vector_cond1_2599	chr13	24565983	24566232	+	7.91180	NA	Intergenic	Intergenic	-16082	NM_001286100	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding
diff_RLAGL_Vector_cond1_6399	chr3	75493026	75493297	+	7.91063	NA	Intergenic	Lx8|LINE|L1	63691	NM_019745	56426	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding
diff_RLAGL_Vector_cond1_8781	chr6	148896358	148896648	+	7.90973	NA	promoter-TSS (NM_181541)	promoter-TSS (NM_181541)	-266	NM_181541	232560	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding
diff_RLAGL_Vector_cond1_4031	chr16	52888221	52888748	+	7.90812	NA	Intergenic	Intergenic	-72740	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA
diff_RLAGL_Vector_cond1_6656	chr3	142282802	142283029	+	7.90684	NA	intron (NM_001190855, intron 7 of 13)	intron (NM_001190855, intron 7 of 13)	108935	NM_001190857	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding
diff_RLAGL_Vector_cond1_4820	chr18	36384180	36384412	+	7.90594	NA	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	35672	NM_001081365	66060	Mm.272527	NM_001081365		Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding
diff_RLAGL_Vector_cond1_4840	chr18	39556397	39556692	+	7.90587	NA	Intergenic	Intergenic	-69299	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding
diff_RLAGL_Vector_cond1_2057	chr12	8760518	8760775	+	7.90575	NA	Intergenic	Intergenic	-10750	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding
diff_RLAGL_Vector_cond1_8534	chr6	107708734	107708963	+	7.90534	NA	Intergenic	Intergenic	179122	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding
diff_RLAGL_Vector_cond1_1495	chr11	9759077	9759319	+	7.90189	NA	Intergenic	MTD|LTR|ERVL-MaLR	567256	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
diff_RLAGL_Vector_cond1_6274	chr3	49756889	49757478	+	7.89993	NA	5' UTR (NM_130448, exon 1 of 4)	5' UTR (NM_130448, exon 1 of 4)	133	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding
diff_RLAGL_Vector_cond1_6655	chr3	142169173	142169390	+	7.89927	NA	promoter-TSS (NM_001277216)	promoter-TSS (NM_001277216)	-53	NM_001277216	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding
diff_RLAGL_Vector_cond1_7734	chr5	53436890	53437170	+	7.89877	NA	Intergenic	Intergenic	-118749	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
diff_RLAGL_Vector_cond1_1269	chr10	96527873	96528091	+	7.89629	NA	Intergenic	Intergenic	-89019	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding
diff_RLAGL_Vector_cond1_1434	chr10	128083077	128083287	+	7.89565	NA	promoter-TSS (NM_016774)	promoter-TSS (NM_016774)	-125	NM_016774	11947	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	-	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding
diff_RLAGL_Vector_cond1_4381	chr17	33909082	33909413	+	7.89224	NA	promoter-TSS (NM_007829)	promoter-TSS (NM_007829)	-69	NR_045146	407803	Mm.250393	NR_045146	ENSMUSG00000092564	BC051226	-	cDNA sequence BC051226	ncRNA
diff_RLAGL_Vector_cond1_1688	chr11	61175046	61175443	+	7.89212	NA	promoter-TSS (NM_001004143)	promoter-TSS (NM_001004143)	-185	NM_001004143	216825	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding
diff_RLAGL_Vector_cond1_4468	chr17	48931637	48932181	+	7.89186	NA	promoter-TSS (NM_027452)	promoter-TSS (NM_027452)	-673	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_648	chr1	167273776	167274199	+	7.89110	NA	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	11140	NM_030724	80914	Mm.280895	NM_030724		Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding
diff_RLAGL_Vector_cond1_5773	chr2	127247700	127247909	+	7.89083	NA	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	12	NM_025296	26371	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding
diff_RLAGL_Vector_cond1_6800	chr4	5540228	5540563	+	7.88902	NA	Intergenic	MTD|LTR|ERVL-MaLR	-91933	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA
diff_RLAGL_Vector_cond1_6081	chr2	173613714	173613970	+	7.88878	NA	intron (NR_027957, intron 3 of 14)	intron (NR_027957, intron 3 of 14)	-35501	NM_027303	70065	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding
diff_RLAGL_Vector_cond1_532	chr1	139501289	139501798	+	7.88801	NA	promoter-TSS (NM_031164)	promoter-TSS (NM_031164)	-164	NM_031164	14060	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding
diff_RLAGL_Vector_cond1_1664	chr11	54958686	54958905	+	7.88799	NA	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	4145	NM_001199275	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_5640	chr2	93462568	93463130	+	7.88728	NA	promoter-TSS (NM_001271432)	promoter-TSS (NM_001271432)	101	NM_001271431	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding
diff_RLAGL_Vector_cond1_685	chr1	173612722	173613099	+	7.88649	NA	Intergenic	RLTR13A|LTR|ERVK	-13636	NM_001177349	623121	Mm.138449	NM_001033384	ENSMUSG00000073491	Pydc4	E030037K03Rik|E430029J22Rik	pyrin domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_8602	chr6	121338232	121338458	+	7.88346	NA	TTS (NM_144512)	TTS (NM_144512)	-8352	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding
diff_RLAGL_Vector_cond1_7873	chr5	102874718	102874938	+	7.88096	NA	intron (NM_001286468, intron 3 of 7)	intron (NM_001286468, intron 3 of 7)	106018	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
diff_RLAGL_Vector_cond1_4640	chr17	83350463	83350749	+	7.88086	NA	promoter-TSS (NM_001114361)	promoter-TSS (NM_001114361)	-325	NM_001114361	78798	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding
diff_RLAGL_Vector_cond1_5572	chr2	78282038	78282255	+	7.87961	NA	intron (NM_177843, intron 3 of 5)	RLTR9D|LTR|ERVK	44599	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding
diff_RLAGL_Vector_cond1_9472	chr8	36249465	36249808	+	7.87950	NA	promoter-TSS (NM_001081150)	promoter-TSS (NM_001081150)	-120	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding
diff_RLAGL_Vector_cond1_8935	chr7	41499326	41499985	+	7.87717	NA	5' UTR (NM_001033530, exon 1 of 4)	5' UTR (NM_001033530, exon 1 of 4)	235	NM_001033530	101835	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding
diff_RLAGL_Vector_cond1_8116	chr5	149873612	149873828	+	7.87433	NA	Intergenic	Intergenic	25973	NR_045758	70969	Mm.78499	NR_045758	ENSMUSG00000107214	4930500F04Rik	4931407C17Rik	RIKEN cDNA 4930500F04 gene	ncRNA
diff_RLAGL_Vector_cond1_5630	chr2	92617740	92617983	+	7.87419	NA	Intergenic	Intergenic	18154	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_3625	chr15	60915760	60915979	+	7.87397	NA	Intergenic	Intergenic	5401	NM_001081067	117586	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding
diff_RLAGL_Vector_cond1_8745	chr6	143751311	143751647	+	7.87361	NA	Intergenic	Intergenic	-100191	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA
diff_RLAGL_Vector_cond1_4566	chr17	69383676	69383919	+	7.87345	NA	promoter-TSS (NM_009547)	promoter-TSS (NM_009547)	-181	NM_009547	22666	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding
diff_RLAGL_Vector_cond1_3271	chr14	96656481	96656795	+	7.87243	NA	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	-137604	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
diff_RLAGL_Vector_cond1_8543	chr6	108836225	108836463	+	7.87234	NA	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	7703	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
diff_RLAGL_Vector_cond1_2676	chr13	52818777	52819093	+	7.87191	NA	Intergenic	Intergenic	-61730	NR_027893	105404	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA
diff_RLAGL_Vector_cond1_8571	chr6	115519425	115519632	+	7.87096	NA	Intergenic	Intergenic	-25176	NM_199033	381802	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease 2 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_7986	chr5	129455326	129455772	+	7.86933	NA	Intergenic	Intergenic	-45682	NM_172276	231769	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_749	chr1	182571172	182571450	+	7.86909	NA	intron (NM_130890, intron 1 of 20)	intron (NM_130890, intron 1 of 20)	6304	NM_130890	170725	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding
diff_RLAGL_Vector_cond1_4850	chr18	42877711	42877985	+	7.86771	NA	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	21658	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
diff_RLAGL_Vector_cond1_6167	chr3	14381622	14382042	+	7.86736	NA	Intergenic	Intergenic	18715	NR_033591	622229	Mm.486084	NR_033591		Gm6300	EG622229	solute carrier family 7 (cationic amino acid transporter, y+ system), member pseudogene	pseudo
diff_RLAGL_Vector_cond1_7773	chr5	71657690	71657902	+	7.86720	NA	exon (NM_010251, exon 1 of 9)	exon (NM_010251, exon 1 of 9)	512	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding
diff_RLAGL_Vector_cond1_6571	chr3	123058631	123059221	+	7.86670	NA	Intergenic	Intergenic	-23939	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding
diff_RLAGL_Vector_cond1_7167	chr4	102429749	102430310	+	7.86658	NA	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	-140031	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding
diff_RLAGL_Vector_cond1_8506	chr6	97806778	97807210	+	7.86629	NA	promoter-TSS (NM_001113198)	promoter-TSS (NM_001113198)	-64	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding
diff_RLAGL_Vector_cond1_2966	chr13	117848842	117849076	+	7.86564	NA	intron (NM_010408, intron 3 of 7)	intron (NM_010408, intron 3 of 7)	-128948	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
diff_RLAGL_Vector_cond1_9941	chr9	17226664	17227111	+	7.86535	NA	Intergenic	RLTR1D2_MM|LTR|ERV1	-848656	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT tumor suppressor homolog 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_619	chr1	162040957	162041251	+	7.86524	NA	intron (NM_172646, intron 16 of 19)	intron (NM_172646, intron 16 of 19)	36135	NR_040562	72753	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA
diff_RLAGL_Vector_cond1_6374	chr3	68378890	68379138	+	7.86443	NA	intron (NM_001113420, intron 1 of 6)	MTD|LTR|ERVL-MaLR	-89169	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_3608	chr15	57861529	57861793	+	7.86418	NA	Intergenic	B4A|SINE|B4	30757	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding
diff_RLAGL_Vector_cond1_9837	chr8	122230176	122230623	+	7.86354	NA	Intergenic	CpG	-51742	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding
diff_RLAGL_Vector_cond1_5866	chr2	142611267	142611490	+	7.86237	NA	Intergenic	LTR50|LTR|ERVL	290086	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
diff_RLAGL_Vector_cond1_5303	chr2	15526315	15526696	+	7.86222	NA	promoter-TSS (NM_001310455)	promoter-TSS (NM_001310455)	26	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7297	chr4	127313941	127314156	+	7.86078	NA	promoter-TSS (NM_008120)	promoter-TSS (NM_008120)	-9	NM_008120	14612	Mm.24615	NM_008120	ENSMUSG00000050234	Gja4	AU020209|AW558810|Cnx37|Cx37|Gja-4	gap junction protein, alpha 4	protein-coding
diff_RLAGL_Vector_cond1_4826	chr18	37741926	37742133	+	7.86078	NA	promoter-TSS (NM_033578)	promoter-TSS (NM_033578)	-65	NM_033578	93703	Mm.247203	NM_033578	ENSMUSG00000023036	Pcdhgb6	-	protocadherin gamma subfamily B, 6	protein-coding
diff_RLAGL_Vector_cond1_9069	chr7	74751645	74751859	+	7.86062	NA	Intergenic	Intergenic	-196972	NM_001038643	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding
diff_RLAGL_Vector_cond1_8581	chr6	117604858	117605093	+	7.85903	NA	Intergenic	Intergenic	146794	NR_045731	72263	Mm.443289	NR_045731	ENSMUSG00000099869	1700030F04Rik	-	RIKEN cDNA 1700030F04 gene	ncRNA
diff_RLAGL_Vector_cond1_5434	chr2	46443130	46443880	+	7.85818	NA	Intergenic	Intergenic	746900	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
diff_RLAGL_Vector_cond1_8237	chr6	29388588	29388813	+	7.85605	NA	Intergenic	Intergenic	-8187	NM_007538	12057	Mm.56987	NM_007538	ENSMUSG00000058831	Opn1sw	AW551857|Bcp	opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	protein-coding
diff_RLAGL_Vector_cond1_1298	chr10	105544020	105544302	+	7.85366	NA	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	30318	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
diff_RLAGL_Vector_cond1_5484	chr2	58175524	58175823	+	7.85126	NA	intron (NR_045895, intron 3 of 3)	intron (NR_045895, intron 3 of 3)	11699	NR_045896	100042926	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	OTTMUSG00000012675	predicted gene 13546	ncRNA
diff_RLAGL_Vector_cond1_10470	chrX	77810800	77811118	+	7.84951	NA	Intergenic	RLTR42|LTR|ERVK	-14999	NM_016979	19108	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding
diff_RLAGL_Vector_cond1_2880	chr13	93922129	93922376	+	7.84838	NA	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	131475	NR_049198	100885837		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA
diff_RLAGL_Vector_cond1_9909	chr9	11380547	11380861	+	7.84784	NA	Intergenic	RLTR1F_Mm|LTR|ERVK	-475929	NM_001170787	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding
diff_RLAGL_Vector_cond1_6433	chr3	87174411	87174707	+	7.84745	NA	5' UTR (NM_001170985, exon 1 of 16)	5' UTR (NM_001170985, exon 1 of 16)	188	NM_001170985	170643	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kin of IRRE like (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1947	chr11	113638672	113639006	+	7.84709	NA	Intergenic	Intergenic	-10690	NM_013581	16834	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding
diff_RLAGL_Vector_cond1_2320	chr12	78225764	78225996	+	7.84639	NA	promoter-TSS (NM_172952)	promoter-TSS (NM_172952)	-775	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding
diff_RLAGL_Vector_cond1_7671	chr5	42181579	42181853	+	7.84478	NA	intron (NR_131130, intron 1 of 2)	intron (NR_131130, intron 1 of 2)	113756	NR_131130	433882	Mm.319353	NR_131130		Gm16223	EG433882|OTTMUSG00000031875	predicted gene 16223	ncRNA
diff_RLAGL_Vector_cond1_3511	chr15	31262384	31262696	+	7.84451	NA	intron (NM_146057, intron 2 of 3)	intron (NM_146057, intron 2 of 3)	38155	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding
diff_RLAGL_Vector_cond1_9010	chr7	63822153	63822456	+	7.84378	NA	Intergenic	Intergenic	-94553	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding
diff_RLAGL_Vector_cond1_1023	chr10	44006288	44006573	+	7.84300	NA	Intergenic	Intergenic	-1584	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding
diff_RLAGL_Vector_cond1_2218	chr12	46819373	46819658	+	7.84058	NA	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-740	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
diff_RLAGL_Vector_cond1_9709	chr8	91797908	91798147	+	7.83954	NA	TTS (NM_001253822)	TTS (NM_001253822)	3627	NM_008393	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding
diff_RLAGL_Vector_cond1_4938	chr18	69147139	69147342	+	7.83945	NA	Intergenic	MER58A|DNA|hAT-Charlie	-124967	NR_105780	102465187		NR_105780	ENSMUSG00000098366	Mir145b	Gm27644|mmu-mir-145b	microRNA 145b	ncRNA
diff_RLAGL_Vector_cond1_6640	chr3	136872046	136872250	+	7.83922	NA	intron (NM_001293622, intron 3 of 12)	intron (NM_001293622, intron 3 of 12)	202082	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding
diff_RLAGL_Vector_cond1_8595	chr6	120294081	120294350	+	7.83914	NA	intron (NM_198884, intron 1 of 19)	CpG	344	NM_198884	330406	Mm.321840	NM_198884	ENSMUSG00000041372	B4galnt3	AB114826|B4GalNAcT3|C330047A21	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding
diff_RLAGL_Vector_cond1_8507	chr6	98163184	98163383	+	7.83837	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	171500	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding
diff_RLAGL_Vector_cond1_83	chr1	21482832	21483174	+	7.83830	NA	intron (NM_001310477, intron 6 of 12)	MTC|LTR|ERVL-MaLR	99447	NM_001113187	98582	Mm.326336	NM_001113187	ENSMUSG00000085079	Khdc1b	AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c	KH domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_5479	chr2	57116532	57116750	+	7.83772	NA	intron (NM_001139509, intron 1 of 7)	CpG	-1603	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding
diff_RLAGL_Vector_cond1_8789	chr7	3289174	3289407	+	7.83698	NA	5' UTR (NM_001093764, exon 1 of 3)	5' UTR (NM_001093764, exon 1 of 3)	252	NM_001093764	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding
diff_RLAGL_Vector_cond1_5169	chr19	43689599	43689887	+	7.83557	NA	promoter-TSS (NM_053103)	promoter-TSS (NM_053103)	54	NM_053103	93685	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding
diff_RLAGL_Vector_cond1_5516	chr2	63127801	63128080	+	7.83447	NA	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	56347	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
diff_RLAGL_Vector_cond1_10130	chr9	65101202	65101754	+	7.83432	NA	promoter-TSS (NM_001290315)	promoter-TSS (NM_001290315)	-8	NM_020043	56741	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding
diff_RLAGL_Vector_cond1_6596	chr3	128337099	128337533	+	7.83276	NA	Intergenic	Intergenic	-105711	NR_045704	402774	Mm.209170	NR_045704	ENSMUSG00000105816	D030025E07Rik	-	RIKEN cDNA D030025E07 gene	ncRNA
diff_RLAGL_Vector_cond1_2735	chr13	62684677	62685330	+	7.83112	NA	Intergenic	Intergenic	-60821	NM_173381	211378	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding
diff_RLAGL_Vector_cond1_8989	chr7	53522221	53522511	+	7.83086	NA	Intergenic	RLTR22_Mur|LTR|ERVK	369523	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
diff_RLAGL_Vector_cond1_3332	chr14	105684375	105684711	+	7.83036	NA	Intergenic	Intergenic	-60773	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA
diff_RLAGL_Vector_cond1_3970	chr16	42190153	42190441	+	7.82861	NA	Intergenic	CpG	113172	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
diff_RLAGL_Vector_cond1_5978	chr2	158178199	158178538	+	7.82783	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-13640	NR_036606	73399	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA
diff_RLAGL_Vector_cond1_1838	chr11	94916541	94916762	+	7.82736	NA	Intergenic	Intergenic	-19573	NM_007742	12842	Mm.277735	NM_007742		Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_4883	chr18	52465399	52465986	+	7.82250	NA	promoter-TSS (NM_026040)	promoter-TSS (NM_026040)	-1	NM_026040	67222	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9062	chr7	73747591	73748056	+	7.82180	NA	intron (NM_001162532, intron 1 of 2)	intron (NM_001162532, intron 1 of 2)	7516	NM_001162532	100038347	Mm.425464	NM_001162532	ENSMUSG00000078670	Fam174b	-	family with sequence similarity 174, member B	protein-coding
diff_RLAGL_Vector_cond1_8591	chr6	119139510	119139914	+	7.82175	NA	intron (NM_001255997, intron 1 of 46)	intron (NM_001255997, intron 1 of 46)	-31217	NM_001159535	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding
diff_RLAGL_Vector_cond1_2438	chr12	108836061	108836367	+	7.82110	NA	promoter-TSS (NR_029773)	promoter-TSS (NR_029773)	-338	NM_181328	214663	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding
diff_RLAGL_Vector_cond1_1030	chr10	45695317	45695836	+	7.82043	NA	intron (NM_172473, intron 20 of 23)	Lx8|LINE|L1	-112128	NR_040624	320363	Mm.123343	NR_040624		D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA
diff_RLAGL_Vector_cond1_5413	chr2	37587987	37588192	+	7.81884	NA	intron (NM_009261, intron 15 of 16)	intron (NM_009261, intron 15 of 16)	59196	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding
diff_RLAGL_Vector_cond1_5263	chr2	7252306	7252602	+	7.81873	NA	intron (NM_001110231, intron 2 of 15)	intron (NM_001110231, intron 2 of 15)	143546	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding
diff_RLAGL_Vector_cond1_2051	chr12	7820310	7820930	+	7.81818	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-157057	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding
diff_RLAGL_Vector_cond1_28	chr1	8905471	8905778	+	7.81674	NA	intron (NM_001290390, intron 3 of 20)	RLTR22_Mur|LTR|ERVK	394253	NM_027671	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_9821	chr8	120255514	120255746	+	7.81588	NA	Intergenic	Intergenic	-27400	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA
diff_RLAGL_Vector_cond1_5119	chr19	24514657	24514919	+	7.81435	NA	intron (NM_008846, intron 1 of 14)	intron (NM_008846, intron 1 of 14)	-37314	NM_026520	68034	Mm.440181	NM_026520		Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding
diff_RLAGL_Vector_cond1_5334	chr2	21091747	21092147	+	7.81292	NA	Intergenic	MamSINE1|SINE|tRNA	113418	NM_027728	71233	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding
diff_RLAGL_Vector_cond1_1846	chr11	95858628	95859007	+	7.81280	NA	promoter-TSS (NR_045187)	promoter-TSS (NR_045187)	0	NR_045187	73906	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA
diff_RLAGL_Vector_cond1_10264	chr9	104002270	104002626	+	7.81220	NA	promoter-TSS (NM_028721)	promoter-TSS (NM_028721)	-96	NM_028721	74025	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding
diff_RLAGL_Vector_cond1_7456	chr4	150236940	150237144	+	7.81185	NA	promoter-TSS (NM_023119)	promoter-TSS (NM_023119)	-155	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding
diff_RLAGL_Vector_cond1_3257	chr14	86392221	86392424	+	7.81149	NA	Intergenic	MER2|DNA|TcMar-Tigger	146352	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
diff_RLAGL_Vector_cond1_7030	chr4	65124645	65124859	+	7.81096	NA	exon (NM_021362, exon 1 of 22)	exon (NM_021362, exon 1 of 22)	578	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding
diff_RLAGL_Vector_cond1_655	chr1	168362427	168362911	+	7.81061	NA	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	69500	NM_008783	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_9885	chr9	5286759	5287050	+	7.81033	NA	Intergenic	RMER12C|LTR|ERVK	-11613	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding
diff_RLAGL_Vector_cond1_6185	chr3	18243774	18244049	+	7.80940	NA	promoter-TSS (NM_007825)	promoter-TSS (NM_007825)	-573	NM_007825	13123	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_3281	chr14	99280897	99281132	+	7.80893	NA	Intergenic	Intergenic	-17677	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding
diff_RLAGL_Vector_cond1_922	chr10	23350014	23350314	+	7.80800	NA	promoter-TSS (NM_010167)	promoter-TSS (NM_010167)	-261	NM_010167	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	eyes absent 4 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_330	chr1	86834530	86834756	+	7.80576	NA	intron (NM_153530, intron 6 of 20)	intron (NM_153530, intron 6 of 20)	130839	NM_001172157	208718	Mm.389152	NM_153530	ENSMUSG00000053333	Dis3l2	4930429A22Rik|8030493P09Rik	DIS3 mitotic control homolog (S. cerevisiae)-like 2	protein-coding
diff_RLAGL_Vector_cond1_8751	chr6	144137094	144137348	+	7.80284	NA	intron (NM_001243163, intron 2 of 13)	URR1A|DNA|hAT-Charlie	72347	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
diff_RLAGL_Vector_cond1_9418	chr8	23756265	23756592	+	7.80132	NA	intron (NM_177086, intron 2 of 6)	RLTR22_Mur|LTR|ERVK	86767	NM_001277239	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding
diff_RLAGL_Vector_cond1_7708	chr5	49383967	49384319	+	7.80121	NA	Intergenic	Intergenic	-98484	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
diff_RLAGL_Vector_cond1_5350	chr2	25094916	25095475	+	7.80095	NA	promoter-TSS (NM_001163626)	promoter-TSS (NM_001163626)	10	NM_001163626	241275	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding
diff_RLAGL_Vector_cond1_8819	chr7	12880957	12881248	+	7.80087	NA	promoter-TSS (NM_153802)	promoter-TSS (NM_153802)	-76	NM_153802	243833	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding
diff_RLAGL_Vector_cond1_6506	chr3	103914122	103914517	+	7.79992	NA	5' UTR (NM_172684, exon 1 of 7)	5' UTR (NM_172684, exon 1 of 7)	199	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding
diff_RLAGL_Vector_cond1_9537	chr8	53614003	53614203	+	7.79761	NA	intron (NM_146208, intron 2 of 9)	intron (NM_146208, intron 2 of 9)	24962	NM_146208	234258	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_3394	chr14	122721815	122722052	+	7.79702	NA	intron (NM_144844, intron 18 of 23)	intron (NM_144844, intron 18 of 23)	187605	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding
diff_RLAGL_Vector_cond1_3170	chr14	62798599	62798863	+	7.79662	NA	intron (NR_045503, intron 2 of 6)	B3|SINE|B2	-37619	NM_008715	18130	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding
diff_RLAGL_Vector_cond1_4504	chr17	56218793	56219083	+	7.79630	NA	promoter-TSS (NM_172624)	promoter-TSS (NM_172624)	-49	NM_172624	224897	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding
diff_RLAGL_Vector_cond1_986	chr10	34483260	34483655	+	7.79585	NA	promoter-TSS (NM_001159544)	promoter-TSS (NM_001159544)	57	NM_001159544	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding
diff_RLAGL_Vector_cond1_6003	chr2	162947741	162947955	+	7.79332	NA	exon (NM_001081338, exon 4 of 23)	exon (NM_001081338, exon 4 of 23)	4383	NM_001081338	241764	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	l(3)mbt-like (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6348	chr3	62885051	62885421	+	7.79299	NA	Intergenic	Intergenic	-280096	NM_177346	229357	Mm.95181	NM_177346		Gpr149	9630018L10Rik|Ieda|PGR10|R35	G protein-coupled receptor 149	protein-coding
diff_RLAGL_Vector_cond1_6028	chr2	167631983	167632347	+	7.79258	NA	promoter-TSS (NM_023230)	promoter-TSS (NM_023230)	-160	NM_023230	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding
diff_RLAGL_Vector_cond1_2273	chr12	61522865	61523305	+	7.79122	NA	promoter-TSS (NM_178714)	promoter-TSS (NM_178714)	-82	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_3836	chr15	102656958	102657184	+	7.79109	NA	Intergenic	Intergenic	13976	NM_026468	67942	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding
diff_RLAGL_Vector_cond1_7100	chr4	85204947	85205443	+	7.79050	NA	promoter-TSS (NM_019535)	promoter-TSS (NM_019535)	-261	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding
diff_RLAGL_Vector_cond1_4637	chr17	83085990	83086426	+	7.79017	NA	Intergenic	LTR78|LTR|ERV1	-7983	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
diff_RLAGL_Vector_cond1_3342	chr14	106714520	106714795	+	7.78944	NA	Intergenic	Intergenic	-228137	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
diff_RLAGL_Vector_cond1_4653	chr17	85090211	85090919	+	7.78764	NA	promoter-TSS (NM_001163622)	promoter-TSS (NM_001163622)	-135	NM_028576	73582	Mm.260753	NM_028576		Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding
diff_RLAGL_Vector_cond1_5761	chr2	124609728	124610026	+	7.78657	NA	promoter-TSS (NM_199238)	promoter-TSS (NM_199238)	-419	NM_001291000	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
diff_RLAGL_Vector_cond1_920	chr10	22148494	22148958	+	7.78581	NA	exon (NM_001254745, exon 1 of 2)	exon (NM_001254745, exon 1 of 2)	544	NM_001254745	319887	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding
diff_RLAGL_Vector_cond1_10340	chr9	118935164	118935396	+	7.78576	NA	intron (NM_133710, intron 1 of 7)	L1MC1|LINE|L1	8744	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding
diff_RLAGL_Vector_cond1_3376	chr14	120626620	120626835	+	7.78484	NA	Intergenic	Intergenic	148266	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding
diff_RLAGL_Vector_cond1_4057	chr16	58670038	58670387	+	7.78438	NA	promoter-TSS (NM_007757)	promoter-TSS (NM_007757)	4	NM_007757	12892	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding
diff_RLAGL_Vector_cond1_5071	chr19	7416945	7417256	+	7.78355	NA	promoter-TSS (NM_175381)	promoter-TSS (NM_175381)	-525	NM_175381	108899	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding
diff_RLAGL_Vector_cond1_2252	chr12	55820990	55821319	+	7.78250	NA	5' UTR (NM_001286263, exon 1 of 42)	5' UTR (NM_001286263, exon 1 of 42)	362	NM_001286263	56784	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding
diff_RLAGL_Vector_cond1_10181	chr9	82877109	82877410	+	7.78085	NA	exon (NM_001081216, exon 36 of 40)	exon (NM_001081216, exon 36 of 40)	47453	NM_022986	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_2005	chr11	119942700	119942949	+	7.78006	NA	promoter-TSS (NM_001037754)	promoter-TSS (NM_001037754)	-268	NM_001037755	108100	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_8493	chr6	94915878	94916168	+	7.77972	NA	Intergenic	Intergenic	-27811	NR_040761	78773	Mm.67065	NR_040761	ENSMUSG00000108187	4930511E03Rik	-	RIKEN cDNA 4930511E03 gene	ncRNA
diff_RLAGL_Vector_cond1_10064	chr9	47297632	47298113	+	7.77959	NA	Intergenic	Intergenic	-232298	NM_001310841	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding
diff_RLAGL_Vector_cond1_9654	chr8	79904932	79905140	+	7.77711	NA	Intergenic	B4|SINE|B4	152972	NM_020259	15245	Mm.254493	NM_020259		Hhip	Hhip1	Hedgehog-interacting protein	protein-coding
diff_RLAGL_Vector_cond1_5710	chr2	113350967	113351170	+	7.77658	NA	intron (NM_001285458, intron 1 of 16)	intron (NM_001285458, intron 1 of 16)	23332	NM_001285458	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|ld	formin 1	protein-coding
diff_RLAGL_Vector_cond1_32	chr1	9148918	9149164	+	7.77443	NA	intron (NM_001290390, intron 2 of 20)	intron (NM_001290390, intron 2 of 20)	150836	NM_027671	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_196	chr1	56972263	56972543	+	7.77424	NA	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	934	NR_024326	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA
diff_RLAGL_Vector_cond1_987	chr10	34508597	34508931	+	7.77298	NA	intron (NM_010237, intron 2 of 8)	intron (NM_010237, intron 2 of 8)	25364	NM_001159544	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding
diff_RLAGL_Vector_cond1_7383	chr4	140665838	140666163	+	7.77244	NA	promoter-TSS (NM_001112722)	promoter-TSS (NM_001112722)	-95	NM_001112722	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding
diff_RLAGL_Vector_cond1_2042	chr12	5123479	5123827	+	7.77243	NA	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	206300	NM_001099628	320817	Mm.210966	NM_001099628		Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding
diff_RLAGL_Vector_cond1_3246	chr14	81195779	81196113	+	7.77193	NA	Intergenic	Intergenic	1195644	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
diff_RLAGL_Vector_cond1_7204	chr4	111414822	111415494	+	7.77184	NA	non-coding (NR_033793, exon 1 of 6)	non-coding (NR_033793, exon 1 of 6)	152	NM_026279	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_3955	chr16	37796373	37796619	+	7.77078	NA	intron (NM_008047, intron 2 of 10)	Lx8|LINE|L1	19441	NM_008047	14314	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding
diff_RLAGL_Vector_cond1_6289	chr3	51739199	51739592	+	7.77045	NA	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	78216	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
diff_RLAGL_Vector_cond1_6999	chr4	57815437	57815668	+	7.76699	NA	intron (NM_001304544, intron 6 of 8)	intron (NM_001304544, intron 6 of 8)	-29696	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding
diff_RLAGL_Vector_cond1_4010	chr16	49964651	49965016	+	7.76681	NA	Intergenic	Intergenic	-15627	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA
diff_RLAGL_Vector_cond1_3118	chr14	49066680	49066887	+	7.76438	NA	promoter-TSS (NM_207214)	promoter-TSS (NM_207214)	-116	NM_207214	105504	Mm.31607	NM_207214	ENSMUSG00000061244	Exoc5	AI447711|AI448003|Gm76|PRO1912|SEC10|Sec10l1	exocyst complex component 5	protein-coding
diff_RLAGL_Vector_cond1_228	chr1	66700660	66701178	+	7.76151	NA	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	88	NM_001310643	66646	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding
diff_RLAGL_Vector_cond1_4451	chr17	47595755	47596055	+	7.76139	NA	intron (NM_007632, intron 2 of 4)	intron (NM_007632, intron 2 of 4)	2438	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding
diff_RLAGL_Vector_cond1_7098	chr4	84884177	84885047	+	7.76117	NA	exon (NM_177385, exon 1 of 5)	exon (NM_177385, exon 1 of 5)	303	NM_177385	338349	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding
diff_RLAGL_Vector_cond1_4896	chr18	57623613	57624038	+	7.76079	NA	intron (NM_001311063, intron 5 of 5)	Lx7|LINE|L1	14760	NR_045360	70157	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA
diff_RLAGL_Vector_cond1_10405	chrX	16836612	16837002	+	7.76011	NA	Intergenic	Intergenic	-19441	NM_172778	109731	Mm.241656	NM_172778	ENSMUSG00000040147	Maob	6330414K01Rik|MAO-B	monoamine oxidase B	protein-coding
diff_RLAGL_Vector_cond1_923	chr10	23864557	23865059	+	7.76010	NA	intron (NM_011979, intron 4 of 6)	intron (NM_011979, intron 4 of 6)	13346	NM_011979	26464	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding
diff_RLAGL_Vector_cond1_4288	chr17	17345747	17346124	+	7.75950	NA	Intergenic	Intergenic	-28397	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2 (yeast)	protein-coding
diff_RLAGL_Vector_cond1_10317	chr9	115355898	115356205	+	7.75940	NA	Intergenic	Intergenic	19890	NR_040730	73856	Mm.399156	NR_040730		4930428G15Rik	-	RIKEN cDNA 4930428G15 gene	ncRNA
diff_RLAGL_Vector_cond1_3787	chr15	94966677	94966889	+	7.75895	NA	intron (NM_178789, intron 5 of 7)	URR1B|DNA|hAT-Charlie	182535	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA
diff_RLAGL_Vector_cond1_10584	chrX	153498077	153498512	+	7.75886	NA	promoter-TSS (NM_018798)	promoter-TSS (NM_018798)	62	NM_018798	54609	Mm.430772	NM_018798	ENSMUSG00000050148	Ubqln2	Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2	ubiquilin 2	protein-coding
diff_RLAGL_Vector_cond1_6952	chr4	46450882	46451107	+	7.75445	NA	promoter-TSS (NM_130889)	promoter-TSS (NM_130889)	-123	NM_130889	67628	Mm.263913	NM_130889		Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding
diff_RLAGL_Vector_cond1_9582	chr8	64733605	64733954	+	7.75391	NA	promoter-TSS (NM_025436)	promoter-TSS (NM_025436)	-201	NM_025436	66234	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding
diff_RLAGL_Vector_cond1_7023	chr4	63260645	63260937	+	7.75200	NA	intron (NM_025685, intron 12 of 60)	intron (NM_025685, intron 12 of 60)	3940	NR_030477	735262		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA
diff_RLAGL_Vector_cond1_5893	chr2	146057102	146057435	+	7.75114	NA	Intergenic	Intergenic	122484	NM_175280	78774	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding
diff_RLAGL_Vector_cond1_6538	chr3	110249964	110250645	+	7.75077	NA	exon (NM_178891, exon 1 of 1)	exon (NM_178891, exon 1 of 1)	695	NR_024139	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding
diff_RLAGL_Vector_cond1_3351	chr14	115041851	115042517	+	7.74881	NA	Intergenic	CpG	-1487	NR_029785	723905		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA
diff_RLAGL_Vector_cond1_903	chr10	17654388	17654666	+	7.74866	NA	Intergenic	RSINE1|SINE|B4	-68701	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding
diff_RLAGL_Vector_cond1_9998	chr9	32695649	32696237	+	7.74749	NA	promoter-TSS (NM_001038642)	promoter-TSS (NM_001038642)	-99	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1	E26 avian leukemia oncogene 1, 5' domain	protein-coding
diff_RLAGL_Vector_cond1_9877	chr9	3403605	3403837	+	7.74589	NA	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-364	NM_027545	244672	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding
diff_RLAGL_Vector_cond1_901	chr10	17035219	17035464	+	7.74586	NA	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	60441	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA
diff_RLAGL_Vector_cond1_5720	chr2	115398100	115398484	+	7.74538	NA	Intergenic	Intergenic	-54012	NR_040516	78193	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA
diff_RLAGL_Vector_cond1_4554	chr17	66754426	66754753	+	7.74390	NA	intron (NM_008984, intron 18 of 30)	intron (NM_008984, intron 18 of 30)	-159967	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding
diff_RLAGL_Vector_cond1_7801	chr5	77124616	77124898	+	7.74373	NA	Intergenic	Intergenic	-9634	NM_175606	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding
diff_RLAGL_Vector_cond1_8324	chr6	52417409	52417619	+	7.74364	NA	Intergenic	Intergenic	-74937	NR_046049	74304	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA
diff_RLAGL_Vector_cond1_7149	chr4	98395795	98396031	+	7.74150	NA	promoter-TSS (NM_001005784)	promoter-TSS (NM_001005784)	87	NM_001005784	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Inadl	Cipp|Patj	InaD-like (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4769	chr18	20210369	20210692	+	7.74069	NA	Intergenic	Intergenic	-36810	NM_181680	211924	Mm.391118	NM_181680		Dsg1c	9330156N18|Dsg1gamma|Dsg6|dsg1g	desmoglein 1 gamma	protein-coding
diff_RLAGL_Vector_cond1_10041	chr9	42486841	42487225	+	7.73930	NA	Intergenic	L1MB4|LINE|L1	-14807	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding
diff_RLAGL_Vector_cond1_1539	chr11	21370548	21370808	+	7.73920	NA	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-49	NM_139297	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding
diff_RLAGL_Vector_cond1_1860	chr11	97745128	97745448	+	7.73907	NA	promoter-TSS (NM_054051)	promoter-TSS (NM_054051)	391	NR_106180	102466256		NR_106180	ENSMUSG00000098919	Mir8102	Gm27795|mmu-mir-8102	microRNA 8102	ncRNA
diff_RLAGL_Vector_cond1_2479	chr12	116585056	116585385	+	7.73859	NA	intron (NM_011215, intron 2 of 22)	intron (NM_011215, intron 2 of 22)	99500	NM_011215	19276	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding
diff_RLAGL_Vector_cond1_24	chr1	7502419	7502737	+	7.73651	NA	Intergenic	RLTR47|LTR|ERVK	413658	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_991	chr10	36974107	36975128	+	7.73571	NA	promoter-TSS (NM_008229)	promoter-TSS (NM_008229)	73	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding
diff_RLAGL_Vector_cond1_565	chr1	150214490	150214777	+	7.73498	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-49685	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA
diff_RLAGL_Vector_cond1_7888	chr5	104859927	104860281	+	7.73269	NA	promoter-TSS (NM_001039231)	promoter-TSS (NM_001039231)	-36	NM_001039231	626391	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik	zinc finger protein 951	protein-coding
diff_RLAGL_Vector_cond1_3761	chr15	90622032	90622490	+	7.73218	NA	intron (NM_025815, intron 3 of 19)	RLTR22_Mur|LTR|ERVK	57127	NM_001033851	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
diff_RLAGL_Vector_cond1_6542	chr3	113629593	113630347	+	7.73192	NA	exon (NM_001038696, exon 1 of 15)	exon (NM_001038696, exon 1 of 15)	179	NM_001038696	67225	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding
diff_RLAGL_Vector_cond1_7778	chr5	72656422	72656667	+	7.73180	NA	intron (NM_001081205, intron 1 of 5)	intron (NM_001081205, intron 1 of 5)	8748	NM_001081205	70701	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4745	chr18	10423812	10424072	+	7.73143	NA	intron (NM_001083628, intron 1 of 32)	intron (NM_001083628, intron 1 of 32)	98763	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding
diff_RLAGL_Vector_cond1_5239	chr2	3283658	3284325	+	7.73082	NA	promoter-TSS (NM_001290369)	promoter-TSS (NM_001290369)	-221	NM_001290368	18108	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_6369	chr3	67732922	67733203	+	7.73027	NA	Intergenic	Intergenic	150294	NM_025813	66868	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8984	chr7	51862203	51862450	+	7.72925	NA	promoter-TSS (NM_001115087)	promoter-TSS (NM_001115087)	-59	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding
diff_RLAGL_Vector_cond1_1273	chr10	98593914	98594281	+	7.72893	NA	Intergenic	Intergenic	-242230	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA
diff_RLAGL_Vector_cond1_6736	chr3	152478977	152479359	+	7.72472	NA	intron (NM_001081277, intron 11 of 13)	intron (NM_001081277, intron 11 of 13)	82484	NM_001287139	108946	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_40	chr1	9772851	9773057	+	7.72316	NA	Intergenic	Intergenic	-24572	NM_173443	70675	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_10268	chr9	104874087	104874597	+	7.71813	NA	intron (NM_028719, intron 3 of 15)	intron (NM_028719, intron 3 of 15)	-178926	NM_053159	94062	Mm.29746	NM_053159		Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding
diff_RLAGL_Vector_cond1_2405	chr12	103457167	103457535	+	7.71672	NA	promoter-TSS (NM_145449)	promoter-TSS (NM_145449)	-128	NM_145449	217845	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding
diff_RLAGL_Vector_cond1_7357	chr4	136031590	136031857	+	7.71672	NA	Intergenic	Intergenic	-10074	NM_013736	27224	Mm.27663	NM_013736	ENSMUSG00000028668	Tceb3	110kDa|AA408125|Tceb3a	transcription elongation factor B (SIII), polypeptide 3	protein-coding
diff_RLAGL_Vector_cond1_535	chr1	139860292	139860640	+	7.71671	NA	Intergenic	MERVL_2A-int|LTR|ERVL	-1767	NM_001025575	545366	Mm.439660	NM_001025575	ENSMUSG00000033898	Cfhr2	Cfhrb_4/2	complement factor H-related 2	protein-coding
diff_RLAGL_Vector_cond1_4179	chr16	88651197	88651401	+	7.71358	NA	Intergenic	Intergenic	-3503	NM_027105	69533	Mm.30967	NM_027105	ENSMUSG00000071471	Krtap26-1	2310002B14Rik|AI507462	keratin associated protein 26-1	protein-coding
diff_RLAGL_Vector_cond1_503	chr1	135199424	135199655	+	7.71340	NA	Intergenic	Intergenic	-31858	NM_134438	171469	Mm.272290	NM_134438	ENSMUSG00000026424	Gpr37l1	AW047233|CAG-18|D0Kist8	G protein-coupled receptor 37-like 1	protein-coding
diff_RLAGL_Vector_cond1_3358	chr14	118057952	118058166	+	7.71284	NA	Intergenic	B4A|SINE|B4	-5813	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding
diff_RLAGL_Vector_cond1_9105	chr7	83638262	83638487	+	7.71258	NA	intron (NM_023377, intron 5 of 5)	intron (NM_023377, intron 5 of 5)	6357	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_7806	chr5	81299280	81299607	+	7.71200	NA	intron (NM_198702, intron 3 of 27)	intron (NM_198702, intron 3 of 27)	277850	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
diff_RLAGL_Vector_cond1_4417	chr17	40866067	40866309	+	7.71164	NA	Intergenic	L2b|LINE|L2	14370	NM_027834	71583	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding
diff_RLAGL_Vector_cond1_7069	chr4	76889407	76890062	+	7.71078	NA	intron (NM_011211, intron 8 of 39)	intron (NM_011211, intron 8 of 39)	1322161	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
diff_RLAGL_Vector_cond1_1465	chr11	6366512	6366725	+	7.70999	NA	Intergenic	Intergenic	-28507	NM_028601	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding
diff_RLAGL_Vector_cond1_1992	chr11	118467636	118468144	+	7.70893	NA	Intergenic	RLTR34B_MM|LTR|ERVK	-9070	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding
diff_RLAGL_Vector_cond1_214	chr1	64121623	64121864	+	7.70883	NA	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-354	NM_033563	93691	Mm.29466	NM_033563		Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding
diff_RLAGL_Vector_cond1_5325	chr2	20532674	20533047	+	7.70817	NA	intron (NM_178059, intron 3 of 18)	intron (NM_178059, intron 3 of 18)	13347	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
diff_RLAGL_Vector_cond1_10039	chr9	42196620	42196922	+	7.70793	NA	intron (NR_040754, intron 3 of 6)	intron (NR_040754, intron 3 of 6)	12460	NR_040754	78194	Mm.251457	NR_040754		4930546K05Rik	-	RIKEN cDNA 4930546K05 gene	ncRNA
diff_RLAGL_Vector_cond1_3017	chr14	16364655	16365141	+	7.70756	NA	promoter-TSS (NM_009409)	promoter-TSS (NM_009409)	-308	NM_009409	21974	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding
diff_RLAGL_Vector_cond1_10065	chr9	47530216	47530508	+	7.70673	NA	promoter-TSS (NM_207675)	promoter-TSS (NM_207675)	10	NM_207675	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding
diff_RLAGL_Vector_cond1_5192	chr19	47731164	47731918	+	7.70330	NA	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-215	NM_026377	67788	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding
diff_RLAGL_Vector_cond1_5845	chr2	139591277	139591538	+	7.70292	NA	intron (NM_175467, intron 9 of 12)	intron (NM_175467, intron 9 of 12)	-86771	NM_001276489	319909	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1 homolog (zebrafish)	protein-coding
diff_RLAGL_Vector_cond1_649	chr1	167285090	167285295	+	7.70229	NA	promoter-TSS (NM_030724)	promoter-TSS (NM_030724)	-65	NM_030724	80914	Mm.280895	NM_030724		Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding
diff_RLAGL_Vector_cond1_4384	chr17	34027673	34028096	+	7.70121	NA	TTS (NM_008202)	TTS (NM_008202)	171	NM_013543	14979	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding
diff_RLAGL_Vector_cond1_7475	chr4	153175766	153176093	+	7.70091	NA	Intergenic	Intergenic	306901	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_9788	chr8	113865846	113866140	+	7.70026	NA	Intergenic	Intergenic	-17154	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding
diff_RLAGL_Vector_cond1_8382	chr6	66896359	66896574	+	7.69878	NA	promoter-TSS (NM_001177560)	promoter-TSS (NM_001177560)	69	NM_001177556	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
diff_RLAGL_Vector_cond1_8207	chr6	21840265	21840638	+	7.69840	NA	intron (NM_173007, intron 3 of 8)	intron (NM_173007, intron 3 of 8)	12064	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding
diff_RLAGL_Vector_cond1_6978	chr4	52106076	52106294	+	7.69825	NA	Intergenic	RLTR1F_Mm|LTR|ERVK	-55075	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA
diff_RLAGL_Vector_cond1_759	chr1	184403115	184403427	+	7.69745	NA	Intergenic	Intergenic	154420	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA
diff_RLAGL_Vector_cond1_5082	chr19	10709425	10709658	+	7.69594	NA	intron (NM_181403, intron 2 of 4)	intron (NM_181403, intron 2 of 4)	20726	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C (yeast)	protein-coding
diff_RLAGL_Vector_cond1_8999	chr7	58658096	58658583	+	7.69418	NA	5' UTR (NM_009728, exon 1 of 21)	5' UTR (NM_009728, exon 1 of 21)	137	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding
diff_RLAGL_Vector_cond1_9234	chr7	126986376	126986592	+	7.69232	NA	TTS (NM_080638)	TTS (NM_080638)	10570	NM_026638	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding
diff_RLAGL_Vector_cond1_1250	chr10	91032446	91032665	+	7.69007	NA	intron (NM_001282947, intron 16 of 26)	intron (NM_001282947, intron 16 of 26)	50188	NM_001282947	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding
diff_RLAGL_Vector_cond1_2576	chr13	19080840	19081056	+	7.68818	NA	intron (NM_175007, intron 3 of 20)	Lx9|LINE|L1	132597	NM_175007	218038	Mm.101650	NM_175007	ENSMUSG00000021314	Amph	-	amphiphysin	protein-coding
diff_RLAGL_Vector_cond1_165	chr1	44551451	44551989	+	7.68696	NA	promoter-TSS (NM_028450)	promoter-TSS (NM_028450)	49	NM_028450	70676	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8359	chr6	59556589	59556830	+	7.68685	NA	Intergenic	MLTR11B|LTR|ERVK	-130419	NM_183183	243385	Mm.138080	NM_183183		Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding
diff_RLAGL_Vector_cond1_8701	chr6	137570857	137571149	+	7.68607	NA	promoter-TSS (NM_001271587)	promoter-TSS (NM_001271587)	6	NM_001271587	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding
diff_RLAGL_Vector_cond1_7110	chr4	88094411	88094892	+	7.68422	NA	promoter-TSS (NM_001081184)	promoter-TSS (NM_001081184)	21	NM_001081184	230393	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	Kiaa1797|mKIAA1797	focadhesin	protein-coding
diff_RLAGL_Vector_cond1_7614	chr5	32183007	32183376	+	7.68357	NA	Intergenic	Intergenic	46719	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding
diff_RLAGL_Vector_cond1_5645	chr2	101266661	101267280	+	7.68210	NA	Intergenic	Intergenic	-357778	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
diff_RLAGL_Vector_cond1_4257	chr17	12740336	12740543	+	7.67978	NA	promoter-TSS (NR_027784)	promoter-TSS (NR_027784)	-872	NR_002853	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA
diff_RLAGL_Vector_cond1_8118	chr5	150118482	150118849	+	7.67909	NA	Intergenic	CpG	99990	NM_001289566	140498	Mm.444643	NM_080468		Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding
diff_RLAGL_Vector_cond1_5198	chr19	52273146	52273835	+	7.67896	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	9193	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding
diff_RLAGL_Vector_cond1_5565	chr2	76928361	76928624	+	7.67889	NA	intron (NM_028004, intron 42 of 191)	intron (NM_028004, intron 42 of 191)	54055	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding
diff_RLAGL_Vector_cond1_4399	chr17	35516880	35517147	+	7.67871	NA	promoter-TSS (NM_146248)	promoter-TSS (NM_146248)	-103	NM_146248	240084	Mm.49544	NM_146248	ENSMUSG00000040312	Cchcr1	Hcr	coiled-coil alpha-helical rod protein 1	protein-coding
diff_RLAGL_Vector_cond1_9970	chr9	24508950	24509202	+	7.67740	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-5936	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_306	chr1	82291379	82291838	+	7.67476	NA	promoter-TSS (NM_010570)	promoter-TSS (NM_010570)	-169	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding
diff_RLAGL_Vector_cond1_677	chr1	172633014	172633264	+	7.67340	NA	promoter-TSS (NM_026725)	promoter-TSS (NM_026725)	-165	NM_026725	68440	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding
diff_RLAGL_Vector_cond1_8778	chr6	148373553	148373829	+	7.67263	NA	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	19035	NR_003634	66184	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo
diff_RLAGL_Vector_cond1_8465	chr6	90360107	90360620	+	7.67209	NA	intron (NM_144940, intron 18 of 19)	intron (NM_144940, intron 18 of 19)	-9131	NM_173002	80292	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding
diff_RLAGL_Vector_cond1_8000	chr5	131733356	131733570	+	7.67204	NA	intron (NM_177047, intron 5 of 18)	intron (NM_177047, intron 5 of 18)	-146806	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
diff_RLAGL_Vector_cond1_1840	chr11	95146132	95146423	+	7.67175	NA	promoter-TSS (NM_007867)	promoter-TSS (NM_007867)	-476	NM_007867	13394	Mm.439766	NM_007867		Dlx4	Dlx-4|Dlx7	distal-less homeobox 4	protein-coding
diff_RLAGL_Vector_cond1_9365	chr8	8661272	8661601	+	7.67113	NA	promoter-TSS (NM_010111)	promoter-TSS (NM_010111)	-663	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
diff_RLAGL_Vector_cond1_5116	chr19	24030520	24031290	+	7.66889	NA	exon (NM_001114174, exon 1 of 11)	exon (NM_001114174, exon 1 of 11)	114	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding
diff_RLAGL_Vector_cond1_9907	chr9	9246061	9246377	+	7.66861	NA	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	-7206	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding
diff_RLAGL_Vector_cond1_1426	chr10	127380296	127380740	+	7.66858	NA	Intergenic	CpG	-9793	NM_001168292	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_1946	chr11	113617535	113617966	+	7.66834	NA	Intergenic	Intergenic	-1731	NM_001042606	20606		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding
diff_RLAGL_Vector_cond1_8487	chr6	92290939	92291163	+	7.66814	NA	Intergenic	Intergenic	-46401	NM_009426	22044	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding
diff_RLAGL_Vector_cond1_1891	chr11	102088625	102088872	+	7.66770	NA	promoter-TSS (NM_016695)	promoter-TSS (NM_016695)	-233	NM_016695	50997	Mm.36242	NM_016695	ENSMUSG00000017314	Mpp2	D11Bwg0652e|Dlg2|Dlgh2|Pals4	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding
diff_RLAGL_Vector_cond1_2215	chr12	45075072	45075308	+	7.66652	NA	promoter-TSS (NM_144552)	promoter-TSS (NM_144552)	-707	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
diff_RLAGL_Vector_cond1_5476	chr2	54938113	54938422	+	7.66549	NA	intron (NM_173030, intron 9 of 12)	RLTR25A|LTR|ERVK	-497703	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
diff_RLAGL_Vector_cond1_8024	chr5	134688719	134689109	+	7.66500	NA	promoter-TSS (NM_010717)	promoter-TSS (NM_010717)	-324	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding
diff_RLAGL_Vector_cond1_2383	chr12	99627654	99628081	+	7.66454	NA	non-coding (NR_045288, exon 1 of 2)	non-coding (NR_045288, exon 1 of 2)	107	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA
diff_RLAGL_Vector_cond1_7832	chr5	90890854	90891053	+	7.66297	NA	promoter-TSS (NM_008176)	promoter-TSS (NM_008176)	-292	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding
diff_RLAGL_Vector_cond1_3150	chr14	57398391	57398717	+	7.66201	NA	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-71	NM_030004	68631	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding
diff_RLAGL_Vector_cond1_9511	chr8	46007261	46007552	+	7.66102	NA	Intergenic	LTR40c|LTR|ERVL	-3196	NM_026278	67620	Mm.383914	NM_026278	ENSMUSG00000031637	Lrp2bp	1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP	Lrp2 binding protein	protein-coding
diff_RLAGL_Vector_cond1_4507	chr17	56462030	56462776	+	7.66021	NA	promoter-TSS (NM_001252456)	promoter-TSS (NM_001252456)	-182	NM_001252456	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding
diff_RLAGL_Vector_cond1_5019	chr18	84857577	84857980	+	7.65969	NA	intron (NM_025797, intron 1 of 4)	intron (NM_025797, intron 1 of 4)	6364	NM_025797	109672	Mm.31018	NM_025797		Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding
diff_RLAGL_Vector_cond1_8503	chr6	97487518	97488023	+	7.65929	NA	intron (NM_145148, intron 2 of 23)	CpG	129887	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013	FERM domain containing 4B	protein-coding
diff_RLAGL_Vector_cond1_3391	chr14	122533964	122534361	+	7.65903	NA	promoter-TSS (NM_144844)	promoter-TSS (NM_144844)	-166	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding
diff_RLAGL_Vector_cond1_9014	chr7	64058078	64058308	+	7.65758	NA	Intergenic	Intergenic	-95642	NM_001039104	17364	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding
diff_RLAGL_Vector_cond1_4452	chr17	47634187	47634479	+	7.65675	NA	intron (NM_198421, intron 1 of 6)	intron (NM_198421, intron 1 of 6)	3643	NM_198421	224836	Mm.59393	NM_198421		Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding
diff_RLAGL_Vector_cond1_2840	chr13	81783035	81783778	+	7.65666	NA	intron (NM_007684, intron 1 of 4)	CpG	114	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
diff_RLAGL_Vector_cond1_2788	chr13	69071132	69071386	+	7.65660	NA	Intergenic	Intergenic	-71718	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding
diff_RLAGL_Vector_cond1_3139	chr14	55122021	55122251	+	7.65629	NA	Intergenic	Intergenic	-5201	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding
diff_RLAGL_Vector_cond1_8280	chr6	40778493	40778764	+	7.65629	NA	intron (NR_035473, intron 2 of 3)	intron (NR_035473, intron 2 of 3)	108866	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding
diff_RLAGL_Vector_cond1_5922	chr2	150217763	150218186	+	7.65624	NA	promoter-TSS (NM_001142411)	promoter-TSS (NM_001142411)	-125	NM_001142411	245174	Mm.378428	NM_001142411	ENSMUSG00000060336	Zfp937	EG245174|Gm4979|ZIPO-I	zinc finger protein 937	protein-coding
diff_RLAGL_Vector_cond1_6377	chr3	68869383	68869637	+	7.65550	NA	promoter-TSS (NM_001167996)	promoter-TSS (NM_001167996)	-76	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding
diff_RLAGL_Vector_cond1_7686	chr5	44710588	44710798	+	7.65548	NA	intron (NM_001077398, intron 1 of 8)	MLT1B|LTR|ERVL-MaLR	89053	NM_010698	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding
diff_RLAGL_Vector_cond1_4930	chr18	67343677	67343889	+	7.65496	NA	5' UTR (NM_007702, exon 1 of 5)	5' UTR (NM_007702, exon 1 of 5)	219	NM_007702	12683	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding
diff_RLAGL_Vector_cond1_4712	chr18	4292185	4292408	+	7.65400	NA	Intergenic	Intergenic	60657	NM_007746	26410	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
diff_RLAGL_Vector_cond1_832	chr1	195092038	195092458	+	7.65388	NA	promoter-TSS (NM_010778)	promoter-TSS (NM_010778)	0	NM_010778	17221	Mm.12884	NM_010778		Cd46	Mcp	CD46 antigen, complement regulatory protein	protein-coding
diff_RLAGL_Vector_cond1_1177	chr10	81137747	81137962	+	7.65284	NA	intron (NM_010731, intron 1 of 2)	CpG	1583	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding
diff_RLAGL_Vector_cond1_3149	chr14	57392351	57392573	+	7.65281	NA	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	6021	NM_030004	68631	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding
diff_RLAGL_Vector_cond1_4534	chr17	63863457	63864574	+	7.65269	NA	promoter-TSS (NM_001037997)	promoter-TSS (NM_001037997)	34	NM_001037997	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding
diff_RLAGL_Vector_cond1_10621	chrY	1245470	1245901	+	7.65258	NA	promoter-TSS (NM_009484)	promoter-TSS (NM_009484)	53	NM_009484	22290	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding
diff_RLAGL_Vector_cond1_10617	chrX	168672490	168672770	+	7.65046	NA	intron (NM_010832, intron 1 of 11)	intron (NM_010832, intron 1 of 11)	1272	NM_010832	17692	Mm.24248	NM_010832		Msl3	AU018931|Msl31|Msl3l1	male-specific lethal 3 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_38	chr1	9700285	9700709	+	7.64995	NA	promoter-TSS (NM_001290397)	promoter-TSS (NM_001290397)	-288	NM_008651	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding
diff_RLAGL_Vector_cond1_6509	chr3	104662107	104662346	+	7.64939	NA	Intergenic	Intergenic	23562	NM_009196	20501	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding
diff_RLAGL_Vector_cond1_5343	chr2	23155314	23155597	+	7.64902	NA	intron (NM_025979, intron 1 of 11)	intron (NM_025979, intron 1 of 11)	569	NM_025979	67121	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding
diff_RLAGL_Vector_cond1_7521	chr5	5370349	5370621	+	7.64836	NA	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	9766	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding
diff_RLAGL_Vector_cond1_7192	chr4	107803418	107804000	+	7.64505	NA	intron (NR_033496, intron 2 of 20)	intron (NR_033496, intron 2 of 20)	1450	NM_001080926	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding
diff_RLAGL_Vector_cond1_1232	chr10	88505262	88505513	+	7.64451	NA	Intergenic	PB1D11|SINE|Alu	-1417	NM_001146690	212862	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_4863	chr18	46139121	46139340	+	7.64266	NA	Intergenic	Intergenic	59588	NM_001170855	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding
diff_RLAGL_Vector_cond1_9080	chr7	76049368	76049740	+	7.64051	NA	Intergenic	MIR|SINE|MIR	-180333	NM_001199224	244071	Mm.322829	NM_172902		Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding
diff_RLAGL_Vector_cond1_7033	chr4	65607131	65607482	+	7.64005	NA	intron (NM_001161782, intron 1 of 1)	intron (NM_001161782, intron 1 of 1)	2320	NM_053084	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding
diff_RLAGL_Vector_cond1_5951	chr2	153444809	153445030	+	7.63909	NA	promoter-TSS (NM_001001986)	promoter-TSS (NM_001001986)	-440	NM_001001986	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding
diff_RLAGL_Vector_cond1_8539	chr6	108571013	108571237	+	7.63902	NA	Intergenic	Intergenic	52042	NR_040757	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA
diff_RLAGL_Vector_cond1_308	chr1	82414473	82414844	+	7.63901	NA	intron (NM_001122685, intron 6 of 6)	intron (NM_001122685, intron 6 of 6)	75609	NM_001122685	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8223	chr6	24379890	24380191	+	7.63667	NA	Intergenic	RMER20B|LTR|ERVK	135027	NM_172535	214704	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding
diff_RLAGL_Vector_cond1_3279	chr14	99218669	99218971	+	7.63433	NA	intron (NM_029320, intron 15 of 17)	intron (NM_029320, intron 15 of 17)	-79871	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding
diff_RLAGL_Vector_cond1_8408	chr6	78361986	78362551	+	7.63395	NA	Intergenic	Intergenic	-8617	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding
diff_RLAGL_Vector_cond1_155	chr1	43240002	43240215	+	7.63378	NA	Intergenic	Intergenic	-43347	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
diff_RLAGL_Vector_cond1_4687	chr17	90836180	90836903	+	7.63315	NA	intron (NM_020252, intron 4 of 22)	intron (NM_020252, intron 4 of 22)	-24628	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
diff_RLAGL_Vector_cond1_6141	chr3	5576486	5576717	+	7.63137	NA	promoter-TSS (NM_001163306)	promoter-TSS (NM_001163306)	-353	NM_001267714	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding
diff_RLAGL_Vector_cond1_9489	chr8	40803723	40803987	+	7.63099	NA	Intergenic	B4A|SINE|B4	10582	NM_001009548	384806	Mm.444736	NM_001009548	ENSMUSG00000046282	Adam20	4930529F22Rik|Adam38	a disintegrin and metallopeptidase domain 20	protein-coding
diff_RLAGL_Vector_cond1_5869	chr2	142804223	142804493	+	7.63064	NA	intron (NM_001081133, intron 12 of 25)	intron (NM_001081133, intron 12 of 25)	97106	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
diff_RLAGL_Vector_cond1_8631	chr6	127324066	127324293	+	7.62955	NA	Intergenic	Intergenic	-16212	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA
diff_RLAGL_Vector_cond1_7467	chr4	151108385	151108713	+	7.62847	NA	intron (NM_001081557, intron 11 of 23)	CpG	18979	NM_001308446	105704528	Mm.415128	NM_001308446		Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding
diff_RLAGL_Vector_cond1_1619	chr11	43155477	43155688	+	7.62817	NA	intron (NM_176999, intron 3 of 22)	intron (NM_176999, intron 3 of 22)	5705	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding
diff_RLAGL_Vector_cond1_8669	chr6	133524615	133524943	+	7.62624	NA	Intergenic	Intergenic	-4410	NM_001185040	545884	Mm.482064	NM_001185040		Gm5885	EG545884	predicted gene 5885	protein-coding
diff_RLAGL_Vector_cond1_1038	chr10	52233583	52233887	+	7.62561	NA	5' UTR (NM_025705, exon 1 of 11)	5' UTR (NM_025705, exon 1 of 11)	116	NM_025705	66686	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7455	chr4	150087344	150087618	+	7.62374	NA	promoter-TSS (NM_177366)	promoter-TSS (NM_177366)	-22	NM_177366	269604	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding
diff_RLAGL_Vector_cond1_6236	chr3	32396852	32397149	+	7.62259	NA	Intergenic	CpG	-31335	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding
diff_RLAGL_Vector_cond1_10300	chr9	109931454	109931932	+	7.62207	NA	promoter-TSS (NM_001205330)	promoter-TSS (NM_001205330)	-81	NM_001205331	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding
diff_RLAGL_Vector_cond1_7567	chr5	19964178	19964459	+	7.62180	NA	intron (NM_001170745, intron 1 of 20)	L1M2|LINE|L1	56800	NM_001170745	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_909	chr10	18407560	18407763	+	7.62115	NA	promoter-TSS (NM_173390)	promoter-TSS (NM_173390)	-14	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding
diff_RLAGL_Vector_cond1_1961	chr11	115823799	115824067	+	7.62097	NA	promoter-TSS (NM_001252532)	promoter-TSS (NM_001252532)	-125	NM_001252532	217325	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	lethal giant larvae homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_723	chr1	178708008	178708438	+	7.62058	NA	intron (NM_001161665, intron 3 of 14)	intron (NM_001161665, intron 3 of 14)	179098	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding
diff_RLAGL_Vector_cond1_5765	chr2	125241827	125242125	+	7.61911	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-5272	NM_001159646	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding
diff_RLAGL_Vector_cond1_4884	chr18	52768112	52768618	+	7.61885	NA	5' UTR (NM_001199154, exon 1 of 11)	5' UTR (NM_001199154, exon 1 of 11)	221	NM_001199154	67847	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding
diff_RLAGL_Vector_cond1_5216	chr19	55136788	55137025	+	7.61828	NA	Intergenic	Intergenic	-37459	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_6175	chr3	15112356	15112743	+	7.61579	NA	Intergenic	Intergenic	141348	NR_040550	77127	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA
diff_RLAGL_Vector_cond1_148	chr1	42388253	42388662	+	7.61540	NA	Intergenic	Intergenic	306368	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
diff_RLAGL_Vector_cond1_375	chr1	95667385	95667803	+	7.61342	NA	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	0	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding
diff_RLAGL_Vector_cond1_2766	chr13	67194333	67194790	+	7.61324	NA	promoter-TSS (NM_001048204)	promoter-TSS (NM_001048204)	55	NM_001048204	218311	Mm.82396	NM_183156	ENSMUSG00000051037	Zfp455	3732412P20Rik|Rslcan-10	zinc finger protein 455	protein-coding
diff_RLAGL_Vector_cond1_4577	chr17	71684053	71684262	+	7.61310	NA	intron (NM_177087, intron 1 of 19)	intron (NM_177087, intron 1 of 19)	10896	NM_177087	320159	Mm.187372	NM_177087	ENSMUSG00000045761	Fam179a	4632412N22Rik	family with sequence similarity 179, member A	protein-coding
diff_RLAGL_Vector_cond1_2530	chr13	6030250	6030452	+	7.61049	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	168862	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding
diff_RLAGL_Vector_cond1_2116	chr12	21200734	21200948	+	7.61025	NA	intron (NM_001135192, intron 4 of 28)	intron (NM_001135192, intron 4 of 28)	85396	NM_008403	16413	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9933	chr9	15493276	15493540	+	7.60706	NA	Intergenic	CpG	-12087	NM_133214	170748	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding
diff_RLAGL_Vector_cond1_6186	chr3	18623879	18624174	+	7.60597	NA	Intergenic	Intergenic	-143549	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
diff_RLAGL_Vector_cond1_10420	chrX	41692021	41692318	+	7.60400	NA	Intergenic	Intergenic	219732	NM_001033422	331401	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding
diff_RLAGL_Vector_cond1_9992	chr9	30896757	30897113	+	7.60368	NA	Intergenic	Intergenic	25517	NM_001024139	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding
diff_RLAGL_Vector_cond1_3314	chr14	103099655	103099907	+	7.60223	NA	promoter-TSS (NM_015822)	promoter-TSS (NM_015822)	-272	NM_015822	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding
diff_RLAGL_Vector_cond1_2287	chr12	69879345	69879612	+	7.59884	NA	intron (NM_201519, intron 1 of 30)	intron (NM_201519, intron 1 of 30)	-13627	NM_178628	73991	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding
diff_RLAGL_Vector_cond1_8861	chr7	24237388	24237828	+	7.59861	NA	promoter-TSS (NM_020262)	promoter-TSS (NM_020262)	-10	NM_020262	56869	Mm.103751	NM_020262	ENSMUSG00000074283	Zfp109	-	zinc finger protein 109	protein-coding
diff_RLAGL_Vector_cond1_9492	chr8	41239361	41239575	+	7.59560	NA	promoter-TSS (NM_023662)	promoter-TSS (NM_023662)	-291	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding
diff_RLAGL_Vector_cond1_2223	chr12	50176659	50176864	+	7.59494	NA	Intergenic	Intergenic	472462	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
diff_RLAGL_Vector_cond1_5294	chr2	14165620	14166003	+	7.59352	NA	Intergenic	L2b|LINE|L2	-8713	NM_001081310	625286	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding
diff_RLAGL_Vector_cond1_454	chr1	120357344	120357645	+	7.59121	NA	Intergenic	Intergenic	16912	NM_207233	226359	Mm.337409	NM_207233	ENSMUSG00000036907	C1ql2	BC040774|CTRP10	complement component 1, q subcomponent-like 2	protein-coding
diff_RLAGL_Vector_cond1_6664	chr3	143090933	143091318	+	7.59018	NA	Intergenic	LTR86C|LTR|ERVL	-151930	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA
diff_RLAGL_Vector_cond1_1726	chr11	69838239	69838670	+	7.59006	NA	promoter-TSS (NM_026982)	promoter-TSS (NM_026982)	-71	NM_026982	69186	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding
diff_RLAGL_Vector_cond1_4619	chr17	78688167	78688370	+	7.58989	NA	intron (NM_011500, intron 3 of 17)	PB1D10|SINE|Alu	48292	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding
diff_RLAGL_Vector_cond1_7597	chr5	26464425	26464663	+	7.58530	NA	intron (NR_029445, intron 4 of 4)	RLTR22_Mus|LTR|ERVK	28770	NR_029445	75942	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA
diff_RLAGL_Vector_cond1_6146	chr3	8666979	8667201	+	7.58442	NA	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-52	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding
diff_RLAGL_Vector_cond1_5427	chr2	45212896	45213119	+	7.58440	NA	Intergenic	Intergenic	-99728	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_4346	chr17	26972947	26973183	+	7.58116	NA	promoter-TSS (NM_001005916)	promoter-TSS (NM_001005916)	-114	NM_001005916	474156	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding
diff_RLAGL_Vector_cond1_4021	chr16	52031057	52031835	+	7.58077	NA	promoter-TSS (NM_001033238)	promoter-TSS (NM_001033238)	-103	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
diff_RLAGL_Vector_cond1_1827	chr11	91776479	91776803	+	7.58014	NA	Intergenic	ID_B1|SINE|B4	-199086	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding
diff_RLAGL_Vector_cond1_9817	chr8	119862306	119862512	+	7.58014	NA	5' UTR (NM_146219, exon 1 of 5)	5' UTR (NM_146219, exon 1 of 5)	104	NM_146219	234796	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding
diff_RLAGL_Vector_cond1_7188	chr4	106799829	106800039	+	7.57616	NA	promoter-TSS (NM_025590)	promoter-TSS (NM_025590)	-103	NM_025590	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding
diff_RLAGL_Vector_cond1_6346	chr3	62348706	62349055	+	7.57611	NA	intron (NM_001081295, intron 3 of 13)	intron (NM_001081295, intron 3 of 13)	10103	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding
diff_RLAGL_Vector_cond1_1831	chr11	93459584	93459831	+	7.57512	NA	intron (NM_028296, intron 3 of 8)	LTR16C|LTR|ERVL	360417	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding
diff_RLAGL_Vector_cond1_5830	chr2	137147006	137147238	+	7.57472	NA	Intergenic	Intergenic	-30602	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding
diff_RLAGL_Vector_cond1_384	chr1	98025815	98026185	+	7.57353	NA	intron (NM_013626, intron 1 of 25)	intron (NM_013626, intron 1 of 25)	21793	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA
diff_RLAGL_Vector_cond1_7151	chr4	98923174	98923454	+	7.57148	NA	promoter-TSS (NM_146144)	promoter-TSS (NM_146144)	-496	NM_001301414	230484	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding
diff_RLAGL_Vector_cond1_8454	chr6	88630714	88630920	+	7.56936	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-3369	NM_001278671	74589	Mm.196226	NM_029013		Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding
diff_RLAGL_Vector_cond1_10495	chrX	95969988	95970276	+	7.56715	NA	Intergenic	Intergenic	-13158	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_2058	chr12	8864944	8865575	+	7.56470	NA	Intergenic	Intergenic	-56048	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding
diff_RLAGL_Vector_cond1_7419	chr4	144803680	144803959	+	7.56327	NA	Intergenic	Intergenic	-17236	NM_001126316	329993	Mm.297407	NM_001126316	ENSMUSG00000078504	Gm438	-	predicted gene 438	protein-coding
diff_RLAGL_Vector_cond1_7281	chr4	125122754	125122959	+	7.56082	NA	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	5025	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|Mcpip1	zinc finger CCCH type containing 12A	protein-coding
diff_RLAGL_Vector_cond1_5883	chr2	144617266	144617540	+	7.55983	NA	exon (NM_025314, exon 3 of 6)	exon (NM_025314, exon 3 of 6)	17450	NM_025314	66044	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding
diff_RLAGL_Vector_cond1_7232	chr4	116221088	116221461	+	7.55838	NA	promoter-TSS (NM_181585)	promoter-TSS (NM_181585)	-640	NM_181585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55pik	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	protein-coding
diff_RLAGL_Vector_cond1_1904	chr11	103763500	103763845	+	7.55786	NA	Intergenic	Intergenic	-10503	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
diff_RLAGL_Vector_cond1_9857	chr8	126641563	126641821	+	7.55659	NA	Intergenic	Intergenic	-48256	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_2021	chr11	121204186	121204523	+	7.55580	NA	promoter-TSS (NM_001001333)	promoter-TSS (NM_001001333)	-79	NM_001001333	238023	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding
diff_RLAGL_Vector_cond1_5929	chr2	150858793	150859020	+	7.55577	NA	intron (NM_024465, intron 1 of 12)	intron (NM_024465, intron 1 of 12)	45825	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding
diff_RLAGL_Vector_cond1_5361	chr2	26501616	26501963	+	7.55473	NA	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	2033	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding
diff_RLAGL_Vector_cond1_4546	chr17	65961412	65961659	+	7.55335	NA	Intergenic	Intergenic	-10348	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6704	chr3	148004059	148004272	+	7.55213	NA	Intergenic	B3A|SINE|B2	950470	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_4442	chr17	46160701	46160933	+	7.55103	NA	promoter-TSS (NM_001145979)	promoter-TSS (NM_001145979)	-215	NM_019581	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_8685	chr6	135323394	135323628	+	7.55083	NA	Intergenic	Intergenic	-13127	NM_029595	76400	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_9180	chr7	107702784	107703256	+	7.55061	NA	intron (NM_001163557, intron 6 of 25)	intron (NM_001163557, intron 6 of 25)	55012	NM_177216	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding
diff_RLAGL_Vector_cond1_1409	chr10	125500342	125500699	+	7.54996	NA	Intergenic	Intergenic	-171985	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
diff_RLAGL_Vector_cond1_4579	chr17	72085825	72086119	+	7.54942	NA	intron (NM_007439, intron 4 of 28)	ORR1A2|LTR|ERVL-MaLR	304025	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding
diff_RLAGL_Vector_cond1_8248	chr6	31560175	31560442	+	7.54939	NA	intron (NM_013723, intron 1 of 7)	intron (NM_013723, intron 1 of 7)	3629	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding
diff_RLAGL_Vector_cond1_5535	chr2	68193198	68193413	+	7.54913	NA	Intergenic	Intergenic	88633	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_7719	chr5	50794620	50795110	+	7.54839	NA	Intergenic	Intergenic	542103	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
diff_RLAGL_Vector_cond1_6690	chr3	146404414	146404664	+	7.54824	NA	promoter-TSS (NM_138744)	promoter-TSS (NM_138744)	-103	NM_001253768	99167	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X breakpoint 2 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_7011	chr4	61909467	61909691	+	7.54798	NA	Intergenic	Intergenic	-74399	NM_008649	17844	Mm.445286	NM_008649	ENSMUSG00000058523	Mup5	Mup18	major urinary protein 5	protein-coding
diff_RLAGL_Vector_cond1_6208	chr3	21526437	21526647	+	7.54579	NA	Intergenic	Intergenic	-550110	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_3770	chr15	93275072	93275537	+	7.54574	NA	promoter-TSS (NM_001033275)	promoter-TSS (NM_001033275)	-220	NM_001033275	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_6654	chr3	141862872	141863102	+	7.54459	NA	exon (NM_007560, exon 6 of 11)	exon (NM_007560, exon 6 of 11)	68601	NM_001277218	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding
diff_RLAGL_Vector_cond1_8352	chr6	58846932	58847224	+	7.54421	NA	intron (NM_028705, intron 2 of 24)	intron (NM_028705, intron 2 of 24)	13378	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding
diff_RLAGL_Vector_cond1_7537	chr5	12512569	12512800	+	7.54395	NA	intron (NM_028882, intron 7 of 17)	intron (NM_028882, intron 7 of 17)	129518	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
diff_RLAGL_Vector_cond1_3006	chr14	13901736	13902070	+	7.54377	NA	Intergenic	Intergenic	59410	NM_025435	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1223	chr10	86947558	86947908	+	7.54347	NA	intron (NM_138673, intron 17 of 68)	L2a|LINE|L2	60209	NM_138673	192188	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding
diff_RLAGL_Vector_cond1_7037	chr4	70220638	70220920	+	7.54271	NA	3' UTR (NM_145990, exon 37 of 37)	3' UTR (NM_145990, exon 37 of 37)	189656	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_10421	chrX	43428852	43429140	+	7.54215	NA	Intergenic	Intergenic	-154212	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding
diff_RLAGL_Vector_cond1_5275	chr2	11602992	11603489	+	7.54108	NA	promoter-TSS (NM_152824)	promoter-TSS (NM_152824)	-41	NM_152824	76938	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding
diff_RLAGL_Vector_cond1_956	chr10	30655881	30656144	+	7.54100	NA	promoter-TSS (NM_001111267)	promoter-TSS (NM_001111267)	-145	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding
diff_RLAGL_Vector_cond1_5931	chr2	151002727	151002955	+	7.53950	NA	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	6557	NM_207204	78177	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding
diff_RLAGL_Vector_cond1_9784	chr8	113390146	113390631	+	7.53868	NA	Intergenic	RMER15|LTR|ERVL	-126894	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA
diff_RLAGL_Vector_cond1_1182	chr10	81450155	81450439	+	7.53789	NA	Intergenic	Intergenic	22834	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding
diff_RLAGL_Vector_cond1_7501	chr4	156100549	156100772	+	7.53183	NA	Intergenic	Intergenic	-9338	NM_145557	230996	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding
diff_RLAGL_Vector_cond1_4780	chr18	21001576	21001819	+	7.53164	NA	promoter-TSS (NM_001303011)	promoter-TSS (NM_001303011)	-260	NM_207623	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding
diff_RLAGL_Vector_cond1_10162	chr9	75960711	75961113	+	7.53132	NA	Intergenic	Intergenic	-54065	NM_173731	208982	Mm.82306	NM_173731	ENSMUSG00000007908	Hmgcll1	BC037381	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	protein-coding
diff_RLAGL_Vector_cond1_6488	chr3	100162212	100162651	+	7.53057	NA	promoter-TSS (NM_010269)	promoter-TSS (NM_010269)	-28	NM_175552	269470	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding
diff_RLAGL_Vector_cond1_7044	chr4	72003871	72004077	+	7.53050	NA	Intergenic	RLTR1A2_MM|LTR|ERV1	196919	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
diff_RLAGL_Vector_cond1_4002	chr16	49229755	49229994	+	7.52924	NA	Intergenic	Intergenic	172388	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding
diff_RLAGL_Vector_cond1_5268	chr2	9918867	9919093	+	7.52810	NA	intron (NM_027748, intron 5 of 6)	intron (NM_027748, intron 5 of 6)	-29440	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA
diff_RLAGL_Vector_cond1_10440	chrX	53694418	53694659	+	7.52630	NA	Intergenic	Intergenic	8011	NR_102724	100504039		NR_102724		LOC100504039	-	uncharacterized LOC100504039	ncRNA
diff_RLAGL_Vector_cond1_6960	chr4	47902809	47903183	+	7.52510	NA	Intergenic	RLTR26C_MM|LTR|ERVK	-142309	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding
diff_RLAGL_Vector_cond1_2402	chr12	103099252	103099473	+	7.52424	NA	intron (NM_001081017, intron 26 of 48)	intron (NM_001081017, intron 26 of 48)	142784	NM_133364	170952	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding
diff_RLAGL_Vector_cond1_9976	chr9	26806206	26806661	+	7.52367	NA	promoter-TSS (NM_153803)	promoter-TSS (NM_153803)	-16	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding
diff_RLAGL_Vector_cond1_424	chr1	113490387	113491035	+	7.52348	NA	Intergenic	RLTR9A4|LTR|ERVK	-1625793	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
diff_RLAGL_Vector_cond1_2460	chr12	112660667	112660965	+	7.52300	NA	intron (NM_009652, intron 3 of 13)	intron (NM_009652, intron 3 of 13)	-1465	NR_105904	102465566		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA
diff_RLAGL_Vector_cond1_10548	chrX	134276852	134277117	+	7.52159	NA	promoter-TSS (NM_001167994)	promoter-TSS (NM_001167994)	0	NM_001167995	215201	Mm.289368	NM_172540	ENSMUSG00000067369	Trmt2b	4732479N06Rik	TRM2 tRNA methyltransferase 2B	protein-coding
diff_RLAGL_Vector_cond1_1552	chr11	24146521	24146769	+	7.52136	NA	intron (NM_016707, intron 2 of 4)	intron (NM_016707, intron 2 of 4)	65950	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding
diff_RLAGL_Vector_cond1_1781	chr11	80820347	80820602	+	7.52126	NA	intron (NM_029537, intron 6 of 6)	intron (NM_029537, intron 6 of 6)	10059	NM_029537	103743	Mm.27682	NM_029537	ENSMUSG00000035413	Tmem98	6530411B15Rik|AI463522	transmembrane protein 98	protein-coding
diff_RLAGL_Vector_cond1_5502	chr2	61086101	61086412	+	7.51973	NA	Intergenic	Intergenic	-111105	NR_045335	100038493	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	ENSMUSG00000075325|OTTMUSG00000012844	predicted gene 13582	ncRNA
diff_RLAGL_Vector_cond1_4785	chr18	23498143	23498513	+	7.51950	NA	intron (NM_001285807, intron 3 of 24)	intron (NM_001285807, intron 3 of 24)	846	NM_001285817	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding
diff_RLAGL_Vector_cond1_6903	chr4	29389328	29389605	+	7.51710	NA	Intergenic	MTD|LTR|ERVL-MaLR	576321	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
diff_RLAGL_Vector_cond1_5441	chr2	48413176	48413378	+	7.51563	NA	Intergenic	RMER17C2|LTR|ERVK	-400832	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
diff_RLAGL_Vector_cond1_8488	chr6	92941324	92941670	+	7.51478	NA	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	915	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA
diff_RLAGL_Vector_cond1_7741	chr5	54279385	54279645	+	7.51392	NA	Intergenic	Intergenic	-70477	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA
diff_RLAGL_Vector_cond1_4969	chr18	74850324	74850578	+	7.51355	NA	Intergenic	Lx8|LINE|L1	71239	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding
diff_RLAGL_Vector_cond1_4782	chr18	22343879	22344105	+	7.51059	NA	Intergenic	CpG	-1097	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9223	chr7	124422267	124422509	+	7.51038	NA	Intergenic	Intergenic	286547	NR_045907	73076	Mm.417827	NR_045907	ENSMUSG00000086254	3100003L05Rik	-	RIKEN cDNA 3100003L05 gene	ncRNA
diff_RLAGL_Vector_cond1_3235	chr14	79481569	79482083	+	7.50966	NA	promoter-TSS (NM_018765)	promoter-TSS (NM_018765)	-558	NM_018765	22380	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_3897	chr16	21845710	21846071	+	7.50960	NA	Intergenic	Intergenic	-46079	NM_172821	71751	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding
diff_RLAGL_Vector_cond1_8820	chr7	12897635	12897834	+	7.50860	NA	promoter-TSS (NM_001290442)	promoter-TSS (NM_001290442)	-75	NM_001290440	232878	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding
diff_RLAGL_Vector_cond1_2345	chr12	85745785	85746071	+	7.50811	NA	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-611	NM_145447	217721	Mm.301076	NM_145447	ENSMUSG00000034258	Mfsd7c	CCT|Flvcr2	major facilitator superfamily domain containing 7C	protein-coding
diff_RLAGL_Vector_cond1_8722	chr6	141015190	141015712	+	7.50550	NA	Intergenic	Intergenic	-233818	NM_018779	54611	Mm.103728	NM_018779		Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding
diff_RLAGL_Vector_cond1_1807	chr11	87108666	87109287	+	7.50509	NA	promoter-TSS (NM_025377)	promoter-TSS (NM_025377)	-262	NM_175563	270906	Mm.132381	NM_175563	ENSMUSG00000020493	Prr11	B930067F20Rik	proline rich 11	protein-coding
diff_RLAGL_Vector_cond1_9741	chr8	104388064	104388264	+	7.50496	NA	intron (NM_153582, intron 1 of 3)	B4A|SINE|B4	7643	NM_153582	97487	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|ENSMUSG00000051554|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_8050	chr5	137628601	137628920	+	7.50394	NA	promoter-TSS (NM_001168652)	promoter-TSS (NM_001168652)	-363	NM_146164	231798	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_663	chr1	169459547	169459868	+	7.50250	NA	Intergenic	Intergenic	71757	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_7710	chr5	50059630	50059970	+	7.50223	NA	promoter-TSS (NM_133911)	promoter-TSS (NM_133911)	-804	NM_133911	70693	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding
diff_RLAGL_Vector_cond1_2705	chr13	59453753	59453976	+	7.50114	NA	TTS (NM_001284221)	TTS (NM_001284221)	90587	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_2086	chr12	13730067	13730769	+	7.49892	NA	Intergenic	Intergenic	421620	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding
diff_RLAGL_Vector_cond1_7180	chr4	105808971	105809203	+	7.49867	NA	Intergenic	Intergenic	-507126	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding
diff_RLAGL_Vector_cond1_5914	chr2	148681428	148681710	+	7.49669	NA	intron (NM_028986, intron 1 of 5)	intron (NM_028986, intron 1 of 5)	449	NM_028986	74533	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding
diff_RLAGL_Vector_cond1_9381	chr8	13338926	13339128	+	7.49642	NA	intron (NM_009361, intron 1 of 11)	CpG	223	NM_009361	21781	Mm.925	NM_009361		Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding
diff_RLAGL_Vector_cond1_5232	chr19	60861207	60861575	+	7.49483	NA	promoter-TSS (NM_053198)	promoter-TSS (NM_053198)	39	NM_053198	94281	Mm.48179	NM_053198		Sfxn4	-	sideroflexin 4	protein-coding
diff_RLAGL_Vector_cond1_628	chr1	163403550	163404034	+	7.49408	NA	promoter-TSS (NM_001313738)	promoter-TSS (NM_001313738)	-123	NM_178883	98376	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding
diff_RLAGL_Vector_cond1_7845	chr5	97111519	97111830	+	7.49268	NA	promoter-TSS (NM_198422)	promoter-TSS (NM_198422)	-78	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding
diff_RLAGL_Vector_cond1_368	chr1	93635773	93635994	+	7.49137	NA	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-156	NM_021537	59041	Mm.28761	NM_021537		Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding
diff_RLAGL_Vector_cond1_7673	chr5	43355237	43355520	+	7.49120	NA	Intergenic	Intergenic	-120024	NR_028417	665934	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934|ENSMUSG00000054483	predicted gene 7854	ncRNA
diff_RLAGL_Vector_cond1_8654	chr6	129902332	129902777	+	7.49058	NA	intron (NM_008463, intron 6 of 7)	Lx8|LINE|L1	10670	NM_008463	16636	Mm.14111	NM_008463	ENSMUSG00000030173	Klra5	Ly49e	killer cell lectin-like receptor, subfamily A, member 5	protein-coding
diff_RLAGL_Vector_cond1_10411	chrX	20820157	20820357	+	7.49039	NA	Intergenic	Intergenic	-28286	NM_009703	11836	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	v-raf murine sarcoma 3611 viral oncogene homolog	protein-coding
diff_RLAGL_Vector_cond1_943	chr10	27198457	27198682	+	7.48962	NA	intron (NM_008481, intron 21 of 63)	RLTR22_Mur|LTR|ERVK	-191297	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
diff_RLAGL_Vector_cond1_4698	chr17	93068287	93068530	+	7.48961	NA	Intergenic	ERVB4_3-I_MM-int|LTR|ERVK	-130609	NM_001315503	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_6454	chr3	92033832	92034387	+	7.48959	NA	Intergenic	Intergenic	19526	NM_207247	242100	Mm.297406	NM_207247	ENSMUSG00000042244	Pglyrp3	Gm420	peptidoglycan recognition protein 3	protein-coding
diff_RLAGL_Vector_cond1_35	chr1	9545112	9545536	+	7.48922	NA	promoter-TSS (NM_021511)	promoter-TSS (NM_021511)	-84	NM_021511	59014	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1727	chr11	69966615	69966869	+	7.48555	NA	intron (NM_001193619, intron 2 of 4)	CpG	1321	NM_016887	53624	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding
diff_RLAGL_Vector_cond1_2296	chr12	71577440	71577695	+	7.48524	NA	Intergenic	ERVB7_2-LTR_MM|LTR|ERVK	36960	NR_045941	73815	Mm.416916	NR_045941		4930404H11Rik	-	RIKEN cDNA 4930404H11 gene	ncRNA
diff_RLAGL_Vector_cond1_8747	chr6	144048245	144048496	+	7.48457	NA	intron (NM_001113559, intron 3 of 13)	intron (NM_001113559, intron 3 of 13)	161198	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
diff_RLAGL_Vector_cond1_7918	chr5	110839922	110840171	+	7.48429	NA	promoter-TSS (NM_153571)	promoter-TSS (NM_153571)	29	NM_016681	50883	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding
diff_RLAGL_Vector_cond1_3670	chr15	68366903	68367124	+	7.48354	NA	Intergenic	MTD|LTR|ERVL-MaLR	-25724	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA
diff_RLAGL_Vector_cond1_8400	chr6	71695194	71695423	+	7.48344	NA	Intergenic	Intergenic	-12373	NM_178608	52250	Mm.146332	NM_178608	ENSMUSG00000052852	Reep1	D6Ertd253e	receptor accessory protein 1	protein-coding
diff_RLAGL_Vector_cond1_4092	chr16	68428605	68429158	+	7.48334	NA	Intergenic	RLTR11C_MM|LTR|ERVK	-807973	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_8652	chr6	129423301	129424009	+	7.48306	NA	3' UTR (NM_001205363, exon 7 of 7)	3' UTR (NM_001205363, exon 7 of 7)	14793	NM_001205364	232414	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding
diff_RLAGL_Vector_cond1_5081	chr19	10456784	10457101	+	7.48259	NA	exon (NM_001111140, exon 1 of 1)	exon (NM_001111140, exon 1 of 1)	505	NM_001111140	278795	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding
diff_RLAGL_Vector_cond1_9550	chr8	56327213	56327413	+	7.48234	NA	Intergenic	Intergenic	32761	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding
diff_RLAGL_Vector_cond1_9430	chr8	25754268	25754657	+	7.48120	NA	promoter-TSS (NM_028102)	promoter-TSS (NM_028102)	-182	NM_028102	72108	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_8051	chr5	137684661	137685034	+	7.47990	NA	promoter-TSS (NM_178162)	promoter-TSS (NM_178162)	-94	NM_001303266	231801	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding
diff_RLAGL_Vector_cond1_3165	chr14	61680952	61681329	+	7.47871	NA	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1233	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA
diff_RLAGL_Vector_cond1_3813	chr15	100355901	100356249	+	7.47819	NA	intron (NM_001024672, intron 1 of 3)	RLTR22_Mur|LTR|ERVK	2875	NM_001024672	554292	Mm.268451	NM_001024672		Methig1	Mettl7a2-Higd1c|Mettl7a2Higd1c|Mettl7a2higd1c|UbiE-YGHL1	methyltransferase hypoxia inducible domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_734	chr1	180390282	180390510	+	7.47748	NA	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-59847	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
diff_RLAGL_Vector_cond1_8748	chr6	144048607	144048844	+	7.47604	NA	intron (NM_001113559, intron 3 of 13)	MIR|SINE|MIR	160843	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
diff_RLAGL_Vector_cond1_3921	chr16	28593188	28593474	+	7.47570	NA	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	6712	NR_030463	751543		NR_030463	ENSMUSG00000076064	Mir690	Mirn690|mir-690|mmu-mir-690	microRNA 690	ncRNA
diff_RLAGL_Vector_cond1_8808	chr7	7120952	7121645	+	7.47358	NA	exon (NM_172738, exon 1 of 5)	exon (NM_172738, exon 1 of 5)	178	NM_172738	232853	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding
diff_RLAGL_Vector_cond1_935	chr10	25959486	25959725	+	7.47172	NA	Intergenic	Intergenic	-65100	NR_030449	751520		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA
diff_RLAGL_Vector_cond1_1809	chr11	87591790	87592480	+	7.47093	NA	promoter-TSS (NM_133215)	promoter-TSS (NM_133215)	-82	NM_133215	170749	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding
diff_RLAGL_Vector_cond1_1836	chr11	94474322	94474588	+	7.47088	NA	promoter-TSS (NM_001177888)	promoter-TSS (NM_001177888)	-257	NM_001177888	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding
diff_RLAGL_Vector_cond1_847	chr10	5188894	5189230	+	7.47017	NA	intron (NM_001079686, intron 2 of 54)	ORR1B1|LTR|ERVL-MaLR	5645	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756	spectrin repeat containing, nuclear envelope 1	protein-coding
diff_RLAGL_Vector_cond1_4349	chr17	28177115	28177320	+	7.47008	NA	promoter-TSS (NM_172617)	promoter-TSS (NM_172617)	-201	NM_172617	224656	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding
diff_RLAGL_Vector_cond1_7377	chr4	139481400	139481788	+	7.46999	NA	intron (NM_001160319, intron 102 of 105)	intron (NM_001160319, intron 102 of 105)	-48954	NM_183148	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding
diff_RLAGL_Vector_cond1_5024	chr18	86353301	86353648	+	7.46996	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-41478	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
diff_RLAGL_Vector_cond1_8817	chr7	12803466	12803753	+	7.46877	NA	TTS (NM_026046)	TTS (NM_026046)	15251	NM_026046	67230	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding
diff_RLAGL_Vector_cond1_6145	chr3	7612744	7613229	+	7.46745	NA	promoter-TSS (NM_001313890)	promoter-TSS (NM_001313890)	-93	NM_001313890	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding
diff_RLAGL_Vector_cond1_6251	chr3	36571998	36572423	+	7.46681	NA	promoter-TSS (NM_009828)	promoter-TSS (NM_009828)	-214	NM_009828	12428	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding
diff_RLAGL_Vector_cond1_5245	chr2	3770429	3770632	+	7.46610	NA	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	57072	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding
diff_RLAGL_Vector_cond1_7519	chr5	5211497	5211827	+	7.46567	NA	intron (NM_001310448, intron 3 of 13)	MER31B|LTR|ERV1	54406	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding
diff_RLAGL_Vector_cond1_7922	chr5	111918973	111919216	+	7.46529	NA	Intergenic	Intergenic	-157366	NR_045833	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA
diff_RLAGL_Vector_cond1_10309	chr9	112235466	112235677	+	7.46527	NA	promoter-TSS (NM_001177619)	promoter-TSS (NM_001177619)	-730	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding
diff_RLAGL_Vector_cond1_6750	chr3	154810554	154810762	+	7.46396	NA	intron (NM_177066, intron 23 of 24)	intron (NM_177066, intron 23 of 24)	99525	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
diff_RLAGL_Vector_cond1_5890	chr2	145691328	145691660	+	7.46203	NA	Intergenic	MMERVK10D3_LTR|LTR|ERVK	-9701	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA
diff_RLAGL_Vector_cond1_9460	chr8	35432383	35432706	+	7.46078	NA	Intergenic	Intergenic	56803	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding
diff_RLAGL_Vector_cond1_3643	chr15	64480467	64480679	+	7.45852	NA	Intergenic	MIRb|SINE|MIR	-97654	NM_010026	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding
diff_RLAGL_Vector_cond1_6852	chr4	16164175	16164402	+	7.45799	NA	promoter-TSS (NM_138952)	promoter-TSS (NM_138952)	178	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA
diff_RLAGL_Vector_cond1_5539	chr2	68740534	68740744	+	7.45536	NA	intron (NM_183113, intron 25 of 28)	MLTR25A|LTR|ERVK	82755	NM_183113	75721	Mm.65456	NM_183113	ENSMUSG00000079324	4932414N04Rik	-	RIKEN cDNA 4932414N04 gene	protein-coding
diff_RLAGL_Vector_cond1_7912	chr5	110363073	110363453	+	7.45517	NA	exon (NM_028596, exon 12 of 12)	exon (NM_028596, exon 12 of 12)	18533	NM_001310709	381667	Mm.332572	NM_001033459	ENSMUSG00000072754	Lrcol1	Clpsl3|Gm1679	leucine rich colipase-like 1	protein-coding
diff_RLAGL_Vector_cond1_6691	chr3	146407188	146407525	+	7.45382	NA	intron (NM_001253769, intron 1 of 13)	intron (NM_001253769, intron 1 of 13)	2714	NM_001253769	99167	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X breakpoint 2 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_9307	chr7	140539711	140540085	+	7.45354	NA	Intergenic	Intergenic	-32580	NM_146520	258513	Mm.261779	NM_146520	ENSMUSG00000052508	Olfr536	MOR252-1|MOR252-4	olfactory receptor 536	protein-coding
diff_RLAGL_Vector_cond1_4545	chr17	65959041	65959375	+	7.45163	NA	Intergenic	Lx8|LINE|L1	-8021	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5870	chr2	142874633	142874864	+	7.45129	NA	intron (NM_001081133, intron 1 of 25)	intron (NM_001081133, intron 1 of 25)	26716	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
diff_RLAGL_Vector_cond1_9598	chr8	69395463	69395677	+	7.45117	NA	promoter-TSS (NR_038044)	promoter-TSS (NR_038044)	-26	NR_038044	378466	Mm.37846	NM_194351		Gm10033	9330175B10Rik|ENSMUSG00000057924|ENSMUSG00000071083|Gm10311	predicted gene 10033	ncRNA
diff_RLAGL_Vector_cond1_6050	chr2	170192713	170192970	+	7.45065	NA	Intergenic	Intergenic	-50166	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding
diff_RLAGL_Vector_cond1_7505	chr5	3265065	3265609	+	7.44868	NA	Intergenic	Intergenic	-78556	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding
diff_RLAGL_Vector_cond1_2764	chr13	67108489	67108787	+	7.44854	NA	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	5390	NM_001256052	432770	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding
diff_RLAGL_Vector_cond1_7415	chr4	144567808	144568426	+	7.44823	NA	Intergenic	RMER15|LTR|ERVL	-2983	NM_001085542	627085	Mm.457899	NM_001085542	ENSMUSG00000078506	Gm13124	OTTMUSG00000010546	predicted gene 13124	protein-coding
diff_RLAGL_Vector_cond1_4321	chr17	23564115	23564598	+	7.44784	NA	promoter-TSS (NM_001033496)	promoter-TSS (NM_001033496)	-130	NM_001033496	449521	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding
diff_RLAGL_Vector_cond1_6737	chr3	152557737	152557995	+	7.44694	NA	intron (NM_001081277, intron 6 of 13)	(CGGGG)n|Simple_repeat|Simple_repeat	-109047	NR_040386	99542	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA
diff_RLAGL_Vector_cond1_7906	chr5	109690586	109691153	+	7.44675	NA	Intergenic	Intergenic	-131876	NM_001164735	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding
diff_RLAGL_Vector_cond1_2160	chr12	32061166	32061528	+	7.44671	NA	promoter-TSS (NM_011158)	promoter-TSS (NM_011158)	-68	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding
diff_RLAGL_Vector_cond1_964	chr10	31445322	31445604	+	7.44662	NA	intron (NM_009413, intron 1 of 6)	intron (NM_009413, intron 1 of 6)	458	NM_009413	21987	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding
diff_RLAGL_Vector_cond1_2864	chr13	90011171	90011421	+	7.44633	NA	intron (NM_028012, intron 3 of 7)	intron (NM_028012, intron 3 of 7)	78312	NM_028012	108138	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding
diff_RLAGL_Vector_cond1_10575	chrX	150459084	150459302	+	7.44526	NA	promoter-TSS (NM_001164683)	promoter-TSS (NM_001164683)	-43	NM_001164683	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding
diff_RLAGL_Vector_cond1_2605	chr13	28069195	28069555	+	7.44381	NA	Intergenic	Intergenic	53152	NM_011165	19110	Mm.18607	NM_011165	ENSMUSG00000005891	Prl4a1	AA409771|Ghd23|PLP-A|Prlpa	prolactin family 4, subfamily a, member 1	protein-coding
diff_RLAGL_Vector_cond1_5276	chr2	11651581	11651864	+	7.44370	NA	intron (NM_008367, intron 1 of 7)	intron (NM_008367, intron 1 of 7)	8930	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding
diff_RLAGL_Vector_cond1_10439	chrX	53670357	53670563	+	7.44346	NA	promoter-TSS (NM_001018063)	promoter-TSS (NM_001018063)	-52	NM_001018063	553127	Mm.328602	NM_001018063	ENSMUSG00000067924	Cxx1b	Mart8c	CAAX box 1B	protein-coding
diff_RLAGL_Vector_cond1_9299	chr7	139188277	139188624	+	7.44322	NA	promoter-TSS (NM_021302)	promoter-TSS (NM_021302)	44	NM_021302	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding
diff_RLAGL_Vector_cond1_9561	chr8	57615315	57615792	+	7.44277	NA	intron (NM_144731, intron 1 of 11)	intron (NM_144731, intron 1 of 11)	-36200	NR_040698	100502619	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA
diff_RLAGL_Vector_cond1_9043	chr7	70300553	70300931	+	7.44233	NA	intron (NR_131144, intron 1 of 3)	intron (NR_131144, intron 1 of 3)	37080	NR_131145	624549	Mm.116344	NR_131144		Gm29683	-	predicted gene, 29683	ncRNA
diff_RLAGL_Vector_cond1_8157	chr6	7844424	7844776	+	7.44189	NA	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-624	NM_052993	94192	Mm.102752	NM_052993		C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding
diff_RLAGL_Vector_cond1_5674	chr2	105749101	105749433	+	7.44159	NA	intron (NM_023876, intron 9 of 9)	intron (NM_023876, intron 9 of 9)	66804	NM_001310146	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding
diff_RLAGL_Vector_cond1_5641	chr2	94157813	94158367	+	7.44154	NA	promoter-TSS (NM_019657)	promoter-TSS (NM_019657)	-181	NM_019657	56348	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding
diff_RLAGL_Vector_cond1_9058	chr7	73200052	73200280	+	7.44153	NA	Intergenic	Intergenic	-98098	NR_046024	625243	Mm.261798	NR_046024		Gm6567	-	predicted gene 6567	ncRNA
diff_RLAGL_Vector_cond1_1411	chr10	125802892	125803611	+	7.44119	NA	Intergenic	Intergenic	-162968	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
diff_RLAGL_Vector_cond1_3893	chr16	20958938	20959265	+	7.43881	NA	Intergenic	RLTR44B|LTR|ERVK	194843	NM_025634	66561	Mm.422867	NM_025634	ENSMUSG00000090356	Teddm3	2310042E22Rik	transmembrane epididymal family member 3	protein-coding
diff_RLAGL_Vector_cond1_6470	chr3	95893674	95893889	+	7.43873	NA	promoter-TSS (NM_146104)	promoter-TSS (NM_146104)	-140	NM_146104	226548	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	anterior pharynx defective 1a homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_6989	chr4	54948710	54949009	+	7.43550	NA	intron (NM_172867, intron 1 of 12)	intron (NM_172867, intron 1 of 12)	914	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding
diff_RLAGL_Vector_cond1_1387	chr10	121059300	121059671	+	7.43481	NA	intron (NM_011915, intron 2 of 9)	intron (NM_011915, intron 2 of 9)	25481	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding
diff_RLAGL_Vector_cond1_1906	chr11	103793593	103793793	+	7.42978	NA	intron (NM_009521, intron 1 of 4)	intron (NM_009521, intron 1 of 4)	19518	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
diff_RLAGL_Vector_cond1_6221	chr3	24783330	24783756	+	7.42896	NA	Intergenic	Intergenic	1369764	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
diff_RLAGL_Vector_cond1_4368	chr17	32241102	32241436	+	7.42817	NA	promoter-TSS (NR_102329)	promoter-TSS (NR_102329)	-651	NR_102329	100043434		NR_102329		Gm4432	-	predicted gene 4432	pseudo
diff_RLAGL_Vector_cond1_4197	chr16	92400150	92400413	+	7.42660	NA	promoter-TSS (NM_019466)	promoter-TSS (NM_019466)	-203	NM_019466	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
diff_RLAGL_Vector_cond1_8600	chr6	121143557	121143780	+	7.42594	NA	Intergenic	Intergenic	-12646	NM_001270475	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4056	chr16	58574357	58574752	+	7.42510	NA	Intergenic	Intergenic	42424	NM_001033404	328695	Mm.293308	NM_001033404	ENSMUSG00000075002	Gm813	Gm1781	predicted gene 813	protein-coding
diff_RLAGL_Vector_cond1_1958	chr11	115765163	115765423	+	7.42466	NA	promoter-TSS (NM_028014)	promoter-TSS (NM_028014)	-140	NM_028014	71947	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding
diff_RLAGL_Vector_cond1_2391	chr12	101758774	101759034	+	7.42449	NA	intron (NM_011812, intron 9 of 10)	intron (NM_011812, intron 9 of 10)	-40381	NM_001082976	74413	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding
diff_RLAGL_Vector_cond1_10155	chr9	73089339	73089542	+	7.42419	NA	intron (NM_023635, intron 5 of 5)	MLT2F|LTR|ERVL	-12958	NM_025890	66991	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding
diff_RLAGL_Vector_cond1_3104	chr14	45388696	45389278	+	7.42405	NA	promoter-TSS (NM_019425)	promoter-TSS (NM_019425)	-191	NM_019425	54342	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_9745	chr8	105289169	105289565	+	7.42219	NA	TTS (NM_177788)	TTS (NM_177788)	161	NM_001166394	74356	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding
diff_RLAGL_Vector_cond1_817	chr1	193301328	193301546	+	7.42069	NA	promoter-TSS (NM_008484)	promoter-TSS (NM_008484)	-557	NM_008484	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding
diff_RLAGL_Vector_cond1_9899	chr9	7763755	7764368	+	7.41959	NA	promoter-TSS (NM_133739)	promoter-TSS (NM_133739)	-16	NM_133739	71929	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding
diff_RLAGL_Vector_cond1_10602	chrX	161743760	161744167	+	7.41758	NA	intron (NM_198409, intron 1 of 1)	intron (NM_198409, intron 1 of 1)	26410	NM_198409	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding
diff_RLAGL_Vector_cond1_2158	chr12	31973551	31973907	+	7.41652	NA	intron (NM_011158, intron 5 of 10)	intron (NM_011158, intron 5 of 10)	-23194	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_913	chr10	18844567	18844880	+	7.41603	NA	promoter-TSS (NM_022032)	promoter-TSS (NM_022032)	-348	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding
diff_RLAGL_Vector_cond1_6943	chr4	44167550	44168275	+	7.41588	NA	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	371	NM_001038993	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding
diff_RLAGL_Vector_cond1_6962	chr4	48680271	48680488	+	7.41531	NA	Intergenic	B4A|SINE|B4	16865	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding
diff_RLAGL_Vector_cond1_6107	chr2	178277260	178277518	+	7.41383	NA	intron (NM_001177789, intron 4 of 12)	intron (NM_001177789, intron 4 of 12)	84305	NM_001007154	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding
diff_RLAGL_Vector_cond1_7928	chr5	113280521	113280809	+	7.41158	NA	promoter-TSS (NM_001309526)	promoter-TSS (NM_001309526)	-64	NM_001309528	52850	Mm.200203	NM_172718	ENSMUSG00000042216	Sgsm1	2410098H20Rik|AA408781|D5Bwg1524e|E130107M15|NuIP|Rutbc2	small G protein signaling modulator 1	protein-coding
diff_RLAGL_Vector_cond1_4875	chr18	49832352	49833148	+	7.41146	NA	promoter-TSS (NM_001081371)	promoter-TSS (NM_001081371)	-247	NM_001081371	240283	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding
diff_RLAGL_Vector_cond1_10127	chr9	64595190	64595566	+	7.41123	NA	intron (NM_001134399, intron 5 of 24)	intron (NM_001134399, intron 5 of 24)	142378	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_8814	chr7	10495346	10495579	+	7.41120	NA	promoter-TSS (NM_009577)	promoter-TSS (NM_009577)	-81	NM_009577	22775	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding
diff_RLAGL_Vector_cond1_2721	chr13	60738544	60738764	+	7.40947	NA	intron (NM_029653, intron 18 of 25)	intron (NM_029653, intron 18 of 25)	47710	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding
diff_RLAGL_Vector_cond1_8431	chr6	83457485	83457744	+	7.40796	NA	Intergenic	Intergenic	15859	NR_028382	320775	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA
diff_RLAGL_Vector_cond1_6004	chr2	163054485	163054827	+	7.40734	NA	promoter-TSS (NM_008652)	promoter-TSS (NM_008652)	21	NM_008652	17865	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding
diff_RLAGL_Vector_cond1_10447	chrX	65460176	65460651	+	7.40689	NA	Intergenic	RLTR13F|LTR|ERVK	412769	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding
diff_RLAGL_Vector_cond1_10453	chrX	68313599	68313819	+	7.40647	NA	Intergenic	Intergenic	-303530	NR_030575	100124449		NR_030575	ENSMUSG00000106233	Mir509	Mirn509|mmu-mir-509	microRNA 509	ncRNA
diff_RLAGL_Vector_cond1_8158	chr6	8023646	8023875	+	7.40508	NA	intron (NM_001037865, intron 27 of 34)	intron (NM_001037865, intron 27 of 34)	168857	NM_001037865	213945	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_5875	chr2	143838807	143839035	+	7.40476	NA	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	24252	NM_001291061	12075	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding
diff_RLAGL_Vector_cond1_6558	chr3	118602228	118602569	+	7.40407	NA	intron (NM_170778, intron 1 of 22)	intron (NM_170778, intron 1 of 22)	40220	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding
diff_RLAGL_Vector_cond1_8222	chr6	24263935	24264157	+	7.40344	NA	Intergenic	Lx9|LINE|L1	-95954	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding
diff_RLAGL_Vector_cond1_8794	chr7	3667147	3667375	+	7.40104	NA	intron (NM_181820, intron 11 of 14)	intron (NM_181820, intron 11 of 14)	-1421	NM_027203	69757	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding
diff_RLAGL_Vector_cond1_5884	chr2	144701811	144702051	+	7.40072	NA	intron (NM_025314, intron 4 of 5)	MTE2b|LTR|ERVL-MaLR	101978	NM_025314	66044	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding
diff_RLAGL_Vector_cond1_3645	chr15	64920957	64921498	+	7.39929	NA	5' UTR (NM_009623, exon 1 of 18)	5' UTR (NM_009623, exon 1 of 18)	1069	NM_001291903	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding
diff_RLAGL_Vector_cond1_4046	chr16	57101227	57101465	+	7.39872	NA	Intergenic	Intergenic	-20368	NM_138599	28185	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|mKIAA0719	translocase of outer mitochondrial membrane 70 homolog A (yeast)	protein-coding
diff_RLAGL_Vector_cond1_2354	chr12	88360389	88361033	+	7.39865	NA	promoter-TSS (NM_028105)	promoter-TSS (NM_028105)	-71	NM_028105	72113	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding
diff_RLAGL_Vector_cond1_8420	chr6	81987051	81987261	+	7.39836	NA	Intergenic	Intergenic	-21207	NM_026490	56284	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding
diff_RLAGL_Vector_cond1_1526	chr11	18830156	18830443	+	7.39758	NA	Intergenic	Intergenic	188670	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_3530	chr15	36793559	36793776	+	7.39586	NA	5' UTR (NM_011740, exon 2 of 7)	5' UTR (NM_011740, exon 2 of 7)	871	NM_001253805	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_7523	chr5	5514713	5514965	+	7.39463	NA	promoter-TSS (NM_001193661)	promoter-TSS (NM_001193661)	10	NM_001193661	64945	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding
diff_RLAGL_Vector_cond1_1743	chr11	73205237	73205510	+	7.39455	NA	intron (NM_029031, intron 2 of 6)	MIRb|SINE|MIR	5891	NM_029031	74637	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding
diff_RLAGL_Vector_cond1_1520	chr11	16901050	16901328	+	7.39239	NA	intron (NM_207655, intron 20 of 27)	intron (NM_207655, intron 20 of 27)	50093	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA
diff_RLAGL_Vector_cond1_2641	chr13	37460394	37460985	+	7.38924	NA	Intergenic	Intergenic	115344	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1	lymphocyte antigen 86	protein-coding
diff_RLAGL_Vector_cond1_8418	chr6	81923641	81923994	+	7.38860	NA	exon (NM_177884, exon 1 of 17)	exon (NM_177884, exon 1 of 17)	148	NM_177884	330361	Mm.474487	NM_177884	ENSMUSG00000035125	Gcfc2	A130099G21|AW146020|GCF2|Tcf9	GC-rich sequence DNA binding factor 2	protein-coding
diff_RLAGL_Vector_cond1_6045	chr2	169730572	169730974	+	7.38838	NA	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	97127	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
diff_RLAGL_Vector_cond1_7574	chr5	22344297	22344709	+	7.38763	NA	5' UTR (NM_011261, exon 1 of 64)	5' UTR (NM_011261, exon 1 of 64)	202	NM_011261	19699	Mm.425236	NM_011261	ENSMUSG00000042453	Reln	reeler|rl	reelin	protein-coding
diff_RLAGL_Vector_cond1_6648	chr3	138526946	138527370	+	7.38759	NA	promoter-TSS (NM_001313980)	promoter-TSS (NM_001313980)	-110	NM_001313980	13684	Mm.3941	NM_007917		Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
diff_RLAGL_Vector_cond1_7345	chr4	134396141	134396388	+	7.38589	NA	promoter-TSS (NM_133880)	promoter-TSS (NM_133880)	-56	NM_001285875	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding
diff_RLAGL_Vector_cond1_8624	chr6	126644289	126644540	+	7.38478	NA	5' UTR (NM_010595, exon 1 of 2)	5' UTR (NM_010595, exon 1 of 2)	1387	NM_010595	16485	Mm.40424	NM_010595		Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding
diff_RLAGL_Vector_cond1_7486	chr4	154658875	154659090	+	7.38388	NA	Intergenic	MLT2D|LTR|ERVL	8885	NM_028513	73353	Mm.30958	NM_028513	ENSMUSG00000051276	Actrt2	1700052K15Rik|Arp-T2|Arpm2	actin-related protein T2	protein-coding
diff_RLAGL_Vector_cond1_3711	chr15	77842282	77842645	+	7.38363	NA	promoter-TSS (NM_022410)	promoter-TSS (NM_022410)	-288	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding
diff_RLAGL_Vector_cond1_10392	chrX	7670384	7670806	+	7.38307	NA	intron (NM_019755, intron 1 of 4)	intron (NM_019755, intron 1 of 4)	795	NM_019755	18824	Mm.18565	NM_019755		Plp2	mIMA4	proteolipid protein 2	protein-coding
diff_RLAGL_Vector_cond1_1901	chr11	103240883	103241089	+	7.38226	NA	intron (NM_016896, intron 3 of 15)	intron (NM_016896, intron 3 of 15)	-22554	NM_177801	328019	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding
diff_RLAGL_Vector_cond1_2284	chr12	67222048	67222389	+	7.38201	NA	5' UTR (NM_001193266, exon 1 of 17)	5' UTR (NM_001193266, exon 1 of 17)	331	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
diff_RLAGL_Vector_cond1_9930	chr9	14784447	14784703	+	7.38053	NA	promoter-TSS (NM_018736)	promoter-TSS (NM_018736)	-79	NM_018736	17535	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	meiotic recombination 11 homolog A (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8322	chr6	52200063	52200283	+	7.37918	NA	promoter-TSS (NR_015611)	promoter-TSS (NR_015611)	-951	NR_015611	72628	Mm.348030	NR_015611	ENSMUSG00000085696	Hoxaas3	2700086A05Rik	Hoxa cluster antisense RNA 3	ncRNA
diff_RLAGL_Vector_cond1_5570	chr2	78049300	78049872	+	7.37877	NA	Intergenic	Intergenic	-1591	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
diff_RLAGL_Vector_cond1_8878	chr7	27552908	27553372	+	7.37792	NA	promoter-TSS (NM_011116)	promoter-TSS (NM_011116)	-28	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding
diff_RLAGL_Vector_cond1_2744	chr13	63272563	63272952	+	7.37779	NA	intron (NM_001289924, intron 13 of 16)	intron (NM_001289924, intron 13 of 16)	24390	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA
diff_RLAGL_Vector_cond1_4429	chr17	44105897	44106143	+	7.37604	NA	promoter-TSS (NM_199016)	promoter-TSS (NM_199016)	-212	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding
diff_RLAGL_Vector_cond1_4505	chr17	56255845	56256111	+	7.37595	NA	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-815	NM_010192	14154	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_2533	chr13	7306808	7307291	+	7.37584	NA	Intergenic	Lx9|LINE|L1	-658278	NM_001291071	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding
diff_RLAGL_Vector_cond1_10414	chrX	23417542	23417888	+	7.37462	NA	Intergenic	Intergenic	-52633	NM_026167	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding
diff_RLAGL_Vector_cond1_4118	chr16	76396700	76396982	+	7.37429	NA	Intergenic	Intergenic	-23792	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_6285	chr3	51326698	51326909	+	7.37332	NA	intron (NM_001291059, intron 1 of 9)	MTC|LTR|ERVL-MaLR	13841	NM_023502	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding
diff_RLAGL_Vector_cond1_433	chr1	118458769	118459099	+	7.36939	NA	non-coding (NR_027901, exon 1 of 1)	non-coding (NR_027901, exon 1 of 1)	331	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA
diff_RLAGL_Vector_cond1_510	chr1	135765850	135766289	+	7.36880	NA	promoter-TSS (NM_013750)	promoter-TSS (NM_013750)	-16	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology-like domain, family A, member 3	protein-coding
diff_RLAGL_Vector_cond1_8338	chr6	55791840	55792444	+	7.36780	NA	Intergenic	Intergenic	-44876	NM_001081665	232016	Mm.333084	NM_001081665	ENSMUSG00000037973	Ccdc129	D530004J12Rik|Gm458	coiled-coil domain containing 129	protein-coding
diff_RLAGL_Vector_cond1_921	chr10	22648823	22649030	+	7.36704	NA	intron (NM_178934, intron 1 of 4)	MamRep1894|DNA|hAT	3915	NM_178934	353169	Mm.473705	NM_178934	ENSMUSG00000037490	Slc2a12	GLUT-12|Glut12	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding
diff_RLAGL_Vector_cond1_4741	chr18	9212942	9213561	+	7.36624	NA	exon (NM_008058, exon 1 of 1)	exon (NM_008058, exon 1 of 1)	395	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled homolog 8 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7690	chr5	45450398	45450683	+	7.36507	NA	promoter-TSS (NM_024236)	promoter-TSS (NM_024236)	-311	NM_024236	110391	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding
diff_RLAGL_Vector_cond1_9169	chr7	105554286	105554528	+	7.36444	NA	promoter-TSS (NM_011421)	promoter-TSS (NM_011421)	47	NM_011421	20597	Mm.4628	NM_011421	ENSMUSG00000037049	Smpd1	A-SMase|ASM|Zn-SMase|aSMase	sphingomyelin phosphodiesterase 1, acid lysosomal	protein-coding
diff_RLAGL_Vector_cond1_9483	chr8	40307759	40308477	+	7.36443	NA	promoter-TSS (NM_030110)	promoter-TSS (NM_030110)	67	NM_030110	78506	Mm.169893	NM_030110		Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding
diff_RLAGL_Vector_cond1_4986	chr18	78873725	78873934	+	7.36438	NA	intron (NM_053099, intron 3 of 5)	intron (NM_053099, intron 3 of 5)	235562	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_8255	chr6	34176878	34177279	+	7.36437	NA	promoter-TSS (NM_021435)	promoter-TSS (NM_021435)	-24	NM_021435	58246	Mm.245527	NM_021435		Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding
diff_RLAGL_Vector_cond1_1115	chr10	71183403	71183622	+	7.36432	NA	Intergenic	Intergenic	-1472	NR_038040	319572	Mm.211663	NR_038040		C730027H18Rik	-	RIKEN cDNA C730027H18 gene	ncRNA
diff_RLAGL_Vector_cond1_10398	chrX	9909545	9909958	+	7.36345	NA	intron (NM_001290728, intron 2 of 15)	intron (NM_001290728, intron 2 of 15)	24130	NM_177704	236643	Mm.246606	NM_177704		Sytl5	ENSMUSG00000054453|slp5	synaptotagmin-like 5	protein-coding
diff_RLAGL_Vector_cond1_6818	chr4	9897691	9898225	+	7.36310	NA	Intergenic	Intergenic	19439	NR_004448	74662	Mm.483401	NR_004448	ENSMUSG00000082843	4930448K20Rik	1700009K09Rik	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
diff_RLAGL_Vector_cond1_1217	chr10	86498522	86499013	+	7.36106	NA	intron (NM_013722, intron 1 of 13)	intron (NM_013722, intron 1 of 13)	129	NM_001164495	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding
diff_RLAGL_Vector_cond1_2834	chr13	81103921	81104138	+	7.36094	NA	intron (NM_054053, intron 88 of 89)	intron (NM_054053, intron 88 of 89)	139955	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA
diff_RLAGL_Vector_cond1_5226	chr19	59687215	59687554	+	7.36066	NA	Intergenic	Intergenic	194248	NR_045308	72647	Mm.410849	NR_045308	ENSMUSG00000100119	2700089I24Rik	-	RIKEN cDNA 2700089I24 gene	ncRNA
diff_RLAGL_Vector_cond1_904	chr10	17680782	17681012	+	7.35966	NA	Intergenic	Intergenic	-42331	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding
diff_RLAGL_Vector_cond1_9313	chr7	141215379	141215720	+	7.35956	NA	promoter-TSS (NM_025886)	promoter-TSS (NM_025886)	-311	NM_025886	66985	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding
diff_RLAGL_Vector_cond1_10443	chrX	56786228	56786473	+	7.35912	NA	promoter-TSS (NM_001287800)	promoter-TSS (NM_001287800)	-177	NM_001287800	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding
diff_RLAGL_Vector_cond1_4553	chr17	66711653	66711994	+	7.35905	NA	intron (NM_008984, intron 21 of 30)	intron (NM_008984, intron 21 of 30)	-117201	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding
diff_RLAGL_Vector_cond1_8294	chr6	43637156	43637549	+	7.35878	NA	intron (NM_001311111, intron 2 of 7)	intron (NM_001311111, intron 2 of 7)	28926	NM_013861	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
diff_RLAGL_Vector_cond1_7365	chr4	137686401	137686632	+	7.35873	NA	intron (NM_001081155, intron 2 of 24)	intron (NM_001081155, intron 2 of 24)	4849	NM_001081155	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding
diff_RLAGL_Vector_cond1_6275	chr3	50026144	50026368	+	7.35847	NA	Intergenic	RLTR9C|LTR|ERVK	-268940	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding
diff_RLAGL_Vector_cond1_7891	chr5	106574584	106574958	+	7.35825	NA	Intergenic	CpG	-116605	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7554	chr5	17408762	17409214	+	7.35802	NA	Intergenic	Intergenic	-67134	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding
diff_RLAGL_Vector_cond1_3331	chr14	105604604	105604937	+	7.35756	NA	Intergenic	Intergenic	15221	NR_102319	380930	Mm.427836	NR_102319		9330188P03Rik	Gm1589|mgt-6	RIKEN cDNA 9330188P03 gene	ncRNA
diff_RLAGL_Vector_cond1_3526	chr15	35204132	35204333	+	7.35669	NA	Intergenic	RLTR12BD_Mm|LTR|ERVK	-48426	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding
diff_RLAGL_Vector_cond1_9122	chr7	90457082	90457300	+	7.35569	NA	promoter-TSS (NM_025460)	promoter-TSS (NM_025460)	17	NM_025460	66271	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding
diff_RLAGL_Vector_cond1_1233	chr10	88828317	88828758	+	7.35474	NA	Intergenic	Intergenic	-1723	NM_175158	70683	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20, small subunit (SSU) processome component, homolog (yeast)	protein-coding
diff_RLAGL_Vector_cond1_4674	chr17	88065848	88066564	+	7.35432	NA	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-921	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding
diff_RLAGL_Vector_cond1_2844	chr13	83997575	83997980	+	7.35412	NA	Intergenic	Intergenic	66997	NR_131220	553095	Mm.39702	NR_131220		Gm17750	-	predicted gene, 17750	ncRNA
diff_RLAGL_Vector_cond1_8773	chr6	147042394	147042808	+	7.35380	NA	promoter-TSS (NM_145573)	promoter-TSS (NM_145573)	-169	NM_145573	232536	Mm.46656	NM_145573		Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding
diff_RLAGL_Vector_cond1_9794	chr8	115977265	115977534	+	7.35341	NA	Intergenic	AmnSINE1|SINE|Deu	-270505	NM_001025577	17132	Mm.275549	NM_001025577		Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog	protein-coding
diff_RLAGL_Vector_cond1_9077	chr7	75827991	75828203	+	7.35272	NA	Intergenic	Intergenic	-20241	NM_182782	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding
diff_RLAGL_Vector_cond1_2267	chr12	59011825	59012285	+	7.35239	NA	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-38	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding
diff_RLAGL_Vector_cond1_3269	chr14	96107526	96107735	+	7.35196	NA	intron (NM_053105, intron 10 of 10)	RLTR44E|LTR|ERVK	226364	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding
diff_RLAGL_Vector_cond1_1515	chr11	16508066	16508352	+	7.34878	NA	5' UTR (NM_001109972, exon 1 of 4)	5' UTR (NM_001109972, exon 1 of 4)	275	NM_001109971	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding
diff_RLAGL_Vector_cond1_10269	chr9	104901159	104901611	+	7.34679	NA	intron (NM_028719, intron 4 of 15)	intron (NM_028719, intron 4 of 15)	-151883	NM_053159	94062	Mm.29746	NM_053159		Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding
diff_RLAGL_Vector_cond1_9833	chr8	121861875	121862199	+	7.34665	NA	Intergenic	Intergenic	-32468	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_3536	chr15	39196668	39196994	+	7.34660	NA	Intergenic	Intergenic	-1455	NM_053271	116838	Mm.309296	NM_053271		Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding
diff_RLAGL_Vector_cond1_9177	chr7	107370440	107370880	+	7.34592	NA	promoter-TSS (NM_021889)	promoter-TSS (NM_021889)	-130	NM_021889	60510	Mm.302793	NM_021889	ENSMUSG00000062542	Syt9	-	synaptotagmin IX	protein-coding
diff_RLAGL_Vector_cond1_6645	chr3	137568530	137568893	+	7.34304	NA	Intergenic	Intergenic	-16089	NM_177665	229862	Mm.246591	NM_177665	ENSMUSG00000055138	Gm4861	9230109N16|EG229862	predicted gene 4861	protein-coding
diff_RLAGL_Vector_cond1_7970	chr5	122799063	122799312	+	7.34276	NA	intron (NM_001042491, intron 11 of 16)	intron (NM_001042491, intron 11 of 16)	-19777	NM_001199676	207565	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding
diff_RLAGL_Vector_cond1_10376	chr9	123215900	123216238	+	7.33999	NA	promoter-TSS (NM_133974)	promoter-TSS (NM_133974)	-31	NM_133974	109332	Mm.27519	NM_133974	ENSMUSG00000035498	Cdcp1	9030022E12Rik|AA409659|E030027H19Rik	CUB domain containing protein 1	protein-coding
diff_RLAGL_Vector_cond1_2179	chr12	36317077	36317548	+	7.33968	NA	exon (NM_025312, exon 2 of 2)	exon (NM_025312, exon 2 of 2)	3143	NM_025312	66042	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2929	chr13	111142777	111142994	+	7.33814	NA	Intergenic	Intergenic	86546	NR_045908	73129	Mm.417826	NR_045908		3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA
diff_RLAGL_Vector_cond1_657	chr1	168502202	168502623	+	7.33760	NA	Intergenic	Intergenic	11769	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA
diff_RLAGL_Vector_cond1_7075	chr4	80950082	80950483	+	7.33749	NA	intron (NM_026821, intron 1 of 1)	intron (NM_026821, intron 1 of 1)	39596	NM_026821	52829	Mm.273986	NM_026821		Lurap1l	1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1	leucine rich adaptor protein 1-like	protein-coding
diff_RLAGL_Vector_cond1_4517	chr17	57134073	57134306	+	7.33576	NA	Intergenic	Intergenic	15588	NM_011617	21948	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7	CD70 antigen	protein-coding
diff_RLAGL_Vector_cond1_2982	chr14	4266652	4266883	+	7.33559	NA	Intergenic	Intergenic	-67996	NM_001309398	554327	Mm.460196	NM_001309398	ENSMUSG00000079388	2610042L04Rik	Tksn|takusan	RIKEN cDNA 2610042L04 gene	protein-coding
diff_RLAGL_Vector_cond1_9285	chr7	136219749	136220024	+	7.33484	NA	Intergenic	Intergenic	-48438	NR_102277	77383	Mm.227745	NR_102277		C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA
diff_RLAGL_Vector_cond1_4067	chr16	62786578	62787272	+	7.33458	NA	promoter-TSS (NM_178925)	promoter-TSS (NM_178925)	-209	NM_178925	106338	Mm.26321	NM_178925		Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding
diff_RLAGL_Vector_cond1_7938	chr5	114551146	114551411	+	7.33354	NA	Intergenic	Intergenic	-16973	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding
diff_RLAGL_Vector_cond1_10504	chrX	99335996	99336225	+	7.33249	NA	Intergenic	Intergenic	107687	NR_033544	100038584	Mm.368385	NR_033544	ENSMUSG00000073051	Gm14812	ENSMUSG00000073051|OTTMUSG00000018066	predicted gene 14812	ncRNA
diff_RLAGL_Vector_cond1_8699	chr6	137370786	137371069	+	7.33238	NA	intron (NM_001164401, intron 2 of 25)	intron (NM_001164401, intron 2 of 25)	-39794	NM_001164402	19277	Mm.186361	NM_011216		Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding
diff_RLAGL_Vector_cond1_5555	chr2	75015411	75015667	+	7.33198	NA	Intergenic	Intergenic	189727	NM_016804	53375	Mm.292613	NM_016804		Mtx2	1500012G02Rik	metaxin 2	protein-coding
diff_RLAGL_Vector_cond1_4919	chr18	64902538	64902780	+	7.33142	NA	intron (NM_001114386, intron 1 of 30)	ORR1A2|LTR|ERVL-MaLR	14903	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding
diff_RLAGL_Vector_cond1_2704	chr13	59228152	59228696	+	7.32792	NA	Intergenic	Intergenic	316027	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_244	chr1	71056173	71056537	+	7.32756	NA	intron (NM_007525, intron 6 of 10)	intron (NM_007525, intron 6 of 10)	46617	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding
diff_RLAGL_Vector_cond1_6448	chr3	90254040	90254318	+	7.32676	NA	promoter-TSS (NM_028881)	promoter-TSS (NM_028881)	-102	NM_028881	74343	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2|mTORC2	CREB regulated transcription coactivator 2	protein-coding
diff_RLAGL_Vector_cond1_9759	chr8	107293095	107293376	+	7.32615	NA	promoter-TSS (NM_001286260)	promoter-TSS (NM_001286260)	-235	NM_018823	54446	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding
diff_RLAGL_Vector_cond1_6776	chr3	159471597	159471868	+	7.32563	NA	Intergenic	RMER16A2|LTR|ERVK	-23701	NM_001172092	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding
diff_RLAGL_Vector_cond1_2708	chr13	59668915	59669151	+	7.32506	NA	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	6751	NM_001035122	105348	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding
diff_RLAGL_Vector_cond1_8234	chr6	28135618	28136143	+	7.32409	NA	Intergenic	Intergenic	-1511	NM_008174	14823	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding
diff_RLAGL_Vector_cond1_6	chr1	4722380	4722590	+	7.32302	NA	Intergenic	Intergenic	63241	NR_033530	27395	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding
diff_RLAGL_Vector_cond1_8730	chr6	141610768	141610986	+	7.32252	NA	Intergenic	Intergenic	-18641	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding
diff_RLAGL_Vector_cond1_3864	chr16	11066065	11066266	+	7.32119	NA	promoter-TSS (NM_009223)	promoter-TSS (NM_009223)	-133	NM_009223	20621	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding
diff_RLAGL_Vector_cond1_1749	chr11	75348240	75348486	+	7.32031	NA	promoter-TSS (NM_001102611)	promoter-TSS (NM_001102611)	20	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding
diff_RLAGL_Vector_cond1_3961	chr16	38944041	38944290	+	7.31805	NA	intron (NM_170599, intron 1 of 6)	intron (NM_170599, intron 1 of 6)	41820	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
diff_RLAGL_Vector_cond1_8807	chr7	6937207	6937431	+	7.31453	NA	intron (NM_001290994, intron 6 of 8)	intron (NM_001290994, intron 6 of 8)	39343	NR_036631	116811	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA
diff_RLAGL_Vector_cond1_9063	chr7	74025095	74025300	+	7.31327	NA	Intergenic	Intergenic	-11515	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_3731	chr15	83248107	83248508	+	7.31238	NA	intron (NM_001004150, intron 1 of 2)	intron (NM_001004150, intron 1 of 2)	3424	NM_001170954	239559	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding
diff_RLAGL_Vector_cond1_4285	chr17	17004597	17005169	+	7.31090	NA	Intergenic	Intergenic	-59220	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding
diff_RLAGL_Vector_cond1_282	chr1	75505496	75506098	+	7.31077	NA	exon (NM_178884, exon 1 of 20)	exon (NM_178884, exon 1 of 20)	655	NM_178884	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding
diff_RLAGL_Vector_cond1_10350	chr9	120011087	120011540	+	7.31069	NA	Intergenic	CpG	12285	NM_011724	22437	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding
diff_RLAGL_Vector_cond1_3505	chr15	28141416	28141734	+	7.31038	NA	Intergenic	Intergenic	-62191	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding
diff_RLAGL_Vector_cond1_5003	chr18	81916170	81916391	+	7.30832	NA	Intergenic	CpG	75800	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA
diff_RLAGL_Vector_cond1_7421	chr4	144931275	144931521	+	7.30780	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	38261	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding
diff_RLAGL_Vector_cond1_10253	chr9	101034406	101034699	+	7.30769	NA	intron (NM_001311149, intron 1 of 13)	CpG	332	NM_001311149	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_10569	chrX	144317793	144318196	+	7.30705	NA	promoter-TSS (NM_026247)	promoter-TSS (NM_026247)	28	NR_037145	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding
diff_RLAGL_Vector_cond1_9078	chr7	75848182	75848386	+	7.30675	NA	promoter-TSS (NM_029652)	promoter-TSS (NM_029652)	-54	NM_182782	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding
diff_RLAGL_Vector_cond1_5411	chr2	36214065	36214338	+	7.30596	NA	Intergenic	Intergenic	-16225	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding
diff_RLAGL_Vector_cond1_5678	chr2	106693365	106693902	+	7.30469	NA	5' UTR (NM_001143683, exon 1 of 7)	5' UTR (NM_001143683, exon 1 of 7)	174	NM_001143683	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_877	chr10	10449202	10449488	+	7.30419	NA	intron (NM_001127353, intron 2 of 36)	intron (NM_001127353, intron 2 of 36)	22969	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding
diff_RLAGL_Vector_cond1_6484	chr3	99227888	99228174	+	7.30340	NA	Intergenic	Intergenic	-25729	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding
diff_RLAGL_Vector_cond1_1277	chr10	99831246	99831460	+	7.30282	NA	Intergenic	Intergenic	-71695	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding
diff_RLAGL_Vector_cond1_9804	chr8	117388404	117388667	+	7.30269	NA	intron (NM_001163262, intron 3 of 20)	intron (NM_001163262, intron 3 of 20)	39365	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding
diff_RLAGL_Vector_cond1_7680	chr5	43981776	43982010	+	7.30091	NA	promoter-TSS (NM_008009)	promoter-TSS (NM_008009)	-94	NM_001271616	14181	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_7051	chr4	72527940	72528256	+	7.29961	NA	Intergenic	Intergenic	324536	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding
diff_RLAGL_Vector_cond1_10476	chrX	85573543	85573968	+	7.29737	NA	promoter-TSS (NM_025729)	promoter-TSS (NM_025729)	-267	NM_025729	66724	Mm.119646	NM_025729	ENSMUSG00000035476	Tab3	4921526G09Rik|Map3k7ip3|mKIAA4135	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_4518	chr17	57247663	57248026	+	7.29502	NA	promoter-TSS (NM_001308074)	promoter-TSS (NM_001308074)	-155	NM_001308072	78308	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding
diff_RLAGL_Vector_cond1_4116	chr16	76242903	76243140	+	7.29458	NA	Intergenic	Intergenic	120408	NR_040575	78215	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA
diff_RLAGL_Vector_cond1_6976	chr4	51745414	51745616	+	7.29389	NA	Intergenic	RLTR22_Mur|LTR|ERVK	305595	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA
diff_RLAGL_Vector_cond1_7568	chr5	20509478	20510054	+	7.29334	NA	intron (NM_001170745, intron 9 of 20)	intron (NM_001170745, intron 9 of 20)	372358	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_1162	chr10	80226216	80226624	+	7.29296	NA	promoter-TSS (NM_023431)	promoter-TSS (NM_023431)	-178	NM_023431	68114	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding
diff_RLAGL_Vector_cond1_4954	chr18	72895055	72895402	+	7.29253	NA	Intergenic	Intergenic	-544159	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
diff_RLAGL_Vector_cond1_893	chr10	13716123	13716327	+	7.29140	NA	intron (NM_025446, intron 3 of 5)	intron (NM_025446, intron 3 of 5)	152605	NM_025446	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding
diff_RLAGL_Vector_cond1_7539	chr5	13628741	13629290	+	7.29008	NA	Intergenic	Intergenic	-162604	NM_027650	71026	Mm.158536	NM_027650	ENSMUSG00000067855	Speer3	4933405P08Rik|SPEER-3	spermatogenesis associated glutamate (E)-rich protein 3	protein-coding
diff_RLAGL_Vector_cond1_3260	chr14	86501422	86501627	+	7.28934	NA	Intergenic	Intergenic	255554	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
diff_RLAGL_Vector_cond1_266	chr1	73702442	73702802	+	7.28771	NA	intron (NR_045311, intron 6 of 8)	intron (NR_045311, intron 6 of 8)	152953	NR_105769	102465179		NR_105769	ENSMUSG00000098504	Mir6351	Gm27936|mmu-mir-6351	microRNA 6351	ncRNA
diff_RLAGL_Vector_cond1_5480	chr2	57211190	57211703	+	7.28633	NA	Intergenic	Intergenic	-26232	NM_001145820	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_453	chr1	120265210	120265471	+	7.28393	NA	promoter-TSS (NM_133186)	promoter-TSS (NM_133186)	-60	NM_133186	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding
diff_RLAGL_Vector_cond1_323	chr1	86447498	86448081	+	7.28333	NA	Intergenic	Intergenic	21460	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding
diff_RLAGL_Vector_cond1_3495	chr15	25984049	25984445	+	7.28244	NA	promoter-TSS (NM_144523)	promoter-TSS (NM_144523)	-119	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding
diff_RLAGL_Vector_cond1_7446	chr4	148903004	148903450	+	7.28230	NA	intron (NM_001159344, intron 4 of 20)	intron (NM_001159344, intron 4 of 20)	98835	NM_001159344	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding
diff_RLAGL_Vector_cond1_6341	chr3	61064769	61065071	+	7.28213	NA	Intergenic	Intergenic	62135	NM_008772	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding
diff_RLAGL_Vector_cond1_2962	chr13	117572060	117572339	+	7.28207	NA	Intergenic	Intergenic	-30121	NM_010408	15165	Mm.343429	NM_010408		Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding
diff_RLAGL_Vector_cond1_8455	chr6	88724359	88724583	+	7.28169	NA	promoter-TSS (NM_001166250)	promoter-TSS (NM_001166250)	59	NM_011844	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding
diff_RLAGL_Vector_cond1_9189	chr7	111179471	111179801	+	7.28028	NA	Intergenic	Intergenic	-56961	NR_015573	75479	Mm.381620	NR_015573		1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA
diff_RLAGL_Vector_cond1_3566	chr15	46592940	46593249	+	7.27987	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-30211	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA
diff_RLAGL_Vector_cond1_3552	chr15	44202057	44202578	+	7.27831	NA	intron (NM_013696, intron 2 of 3)	intron (NM_013696, intron 2 of 3)	6182	NM_013696	22045	Mm.309350	NM_013696	ENSMUSG00000038760	Trhr	TRH-R1	thyrotropin releasing hormone receptor	protein-coding
diff_RLAGL_Vector_cond1_7750	chr5	64579546	64580022	+	7.27797	NA	Intergenic	Intergenic	30915	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA
diff_RLAGL_Vector_cond1_4121	chr16	76786548	76786756	+	7.27699	NA	Intergenic	Intergenic	224229	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA
diff_RLAGL_Vector_cond1_9448	chr8	31168631	31168933	+	7.27619	NA	promoter-TSS (NM_026453)	promoter-TSS (NM_026453)	-58	NM_026453	67920	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_5007	chr18	82489329	82489624	+	7.27591	NA	intron (NM_010777, intron 1 of 6)	intron (NM_010777, intron 1 of 6)	14353	NM_010777	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|mld|shi	myelin basic protein	protein-coding
diff_RLAGL_Vector_cond1_6621	chr3	132636988	132637564	+	7.27470	NA	intron (NM_001270430, intron 2 of 2)	intron (NM_001270430, intron 2 of 2)	7085	NM_001270430	433653		NM_001270430		Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3809	chr15	99875373	99875712	+	7.27433	NA	promoter-TSS (NM_001113545)	promoter-TSS (NM_001113545)	-86	NM_001113545	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding
diff_RLAGL_Vector_cond1_883	chr10	11343223	11343955	+	7.27403	NA	exon (NM_010146, exon 1 of 4)	exon (NM_010146, exon 1 of 4)	144	NM_010146	13853	Mm.89946	NM_010146		Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding
diff_RLAGL_Vector_cond1_4536	chr17	64243028	64243240	+	7.27147	NA	Intergenic	Intergenic	88749	NM_144859	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding
diff_RLAGL_Vector_cond1_720	chr1	178530617	178530876	+	7.27121	NA	exon (NM_001161665, exon 2 of 15)	exon (NM_001161665, exon 2 of 15)	1621	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding
diff_RLAGL_Vector_cond1_1957	chr11	115628076	115628391	+	7.27044	NA	promoter-TSS (NM_001252395)	promoter-TSS (NM_001252395)	62	NM_001252394	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding
diff_RLAGL_Vector_cond1_3884	chr16	18144223	18144522	+	7.26965	NA	intron (NM_022982, intron 1 of 1)	MER58A|DNA|hAT-Charlie	16666	NM_022982	65079	Mm.40149	NM_022982	ENSMUSG00000043811	Rtn4r	NOGOR|NgR|NgR1	reticulon 4 receptor	protein-coding
diff_RLAGL_Vector_cond1_8032	chr5	135489092	135489312	+	7.26926	NA	intron (NM_146001, intron 1 of 30)	CpG	55920	NM_146001	215114	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_130	chr1	36088412	36088809	+	7.26858	NA	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	20210	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_8947	chr7	43782535	43782825	+	7.26817	NA	intron (NM_133712, intron 2 of 5)	intron (NM_133712, intron 2 of 5)	1626	NM_133712	69540	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding
diff_RLAGL_Vector_cond1_2616	chr13	29986095	29986395	+	7.26786	NA	promoter-TSS (NM_010093)	promoter-TSS (NM_010093)	-182	NM_010093	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding
diff_RLAGL_Vector_cond1_5190	chr19	47579392	47579678	+	7.26766	NA	promoter-TSS (NM_001164639)	promoter-TSS (NM_001164639)	-484	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding
diff_RLAGL_Vector_cond1_4734	chr18	8693943	8694296	+	7.26697	NA	Intergenic	Intergenic	-518737	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled homolog 8 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_812	chr1	192598469	192598692	+	7.26690	NA	intron (NM_144881, intron 9 of 11)	intron (NM_144881, intron 9 of 11)	172639	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding
diff_RLAGL_Vector_cond1_1627	chr11	44001821	44002227	+	7.26603	NA	Intergenic	L3b|LINE|CR1	-100787	NM_001284381	11548	Mm.39086	NM_007416	ENSMUSG00000050541	Adra1b	[a]1b	adrenergic receptor, alpha 1b	protein-coding
diff_RLAGL_Vector_cond1_5437	chr2	46570940	46571632	+	7.26586	NA	Intergenic	Intergenic	874681	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
diff_RLAGL_Vector_cond1_2413	chr12	104824643	104824948	+	7.26567	NA	intron (NM_053155, intron 1 of 13)	intron (NM_053155, intron 1 of 13)	40281	NR_104438	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding
diff_RLAGL_Vector_cond1_5623	chr2	91237084	91237398	+	7.26531	NA	promoter-TSS (NR_015464)	promoter-TSS (NR_015464)	95	NR_015464	606735	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA
diff_RLAGL_Vector_cond1_7384	chr4	140699621	140699894	+	7.26479	NA	Intergenic	Intergenic	-1716	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding
diff_RLAGL_Vector_cond1_1845	chr11	95712647	95713036	+	7.26367	NA	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-87	NR_045780	432396	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_1487	chr11	8582627	8582932	+	7.26278	NA	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	81756	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding
diff_RLAGL_Vector_cond1_9685	chr8	85492108	85492673	+	7.26263	NA	promoter-TSS (NM_173866)	promoter-TSS (NM_173866)	-227	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding
diff_RLAGL_Vector_cond1_1421	chr10	127132489	127133063	+	7.26244	NA	Intergenic	Intergenic	-11616	NM_177614	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding
diff_RLAGL_Vector_cond1_3058	chr14	27823040	27823403	+	7.26241	NA	intron (NM_177814, intron 3 of 15)	intron (NM_177814, intron 3 of 15)	200779	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding
diff_RLAGL_Vector_cond1_7454	chr4	150048111	150048335	+	7.25925	NA	Intergenic	Intergenic	-20231	NR_029751	723848		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA
diff_RLAGL_Vector_cond1_3820	chr15	100914751	100915218	+	7.25914	NA	intron (NM_001077499, intron 1 of 26)	URR1A|DNA|hAT-Charlie	-21287	NM_011323	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding
diff_RLAGL_Vector_cond1_4788	chr18	24020254	24020466	+	7.25891	NA	intron (NM_021559, intron 1 of 3)	CpG	411	NM_021559	59057	Mm.417427	NM_021559		Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf191|Znf24|Znp191	zinc finger protein 24	protein-coding
diff_RLAGL_Vector_cond1_29	chr1	8927182	8927435	+	7.25728	NA	intron (NM_001290390, intron 3 of 20)	Lx8b|LINE|L1	372569	NM_027671	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_7164	chr4	101440050	101440385	+	7.25562	NA	intron (NM_001177602, intron 2 of 5)	intron (NM_001177602, intron 2 of 5)	20514	NM_009647	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding
diff_RLAGL_Vector_cond1_1513	chr11	15274039	15274475	+	7.25539	NA	Intergenic	ERVB5_1-LTR_MM|LTR|ERVK	675017	NM_001164166	432536	Mm.33646	NM_001164166		Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding
diff_RLAGL_Vector_cond1_6070	chr2	172345222	172345887	+	7.25534	NA	promoter-TSS (NM_025912)	promoter-TSS (NM_025912)	-23	NM_025912	67017	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding
diff_RLAGL_Vector_cond1_3175	chr14	63326044	63326588	+	7.25364	NA	Intergenic	Intergenic	-81045	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_7973	chr5	123135532	123135734	+	7.25262	NA	Intergenic	CpG	-3004	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog gene family, member f	protein-coding
diff_RLAGL_Vector_cond1_933	chr10	25918140	25918555	+	7.25228	NA	Intergenic	Intergenic	-23842	NR_030449	751520		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA
diff_RLAGL_Vector_cond1_1740	chr11	73036890	73037272	+	7.25073	NA	intron (NM_018883, intron 11 of 15)	intron (NM_018883, intron 11 of 15)	-10786	NM_025818	66874	Mm.41903	NM_025818		Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding
diff_RLAGL_Vector_cond1_3176	chr14	63606227	63606583	+	7.25049	NA	promoter-TSS (NM_173393)	promoter-TSS (NM_173393)	-125	NM_173393	219149	Mm.450437	NM_173393	ENSMUSG00000035067	Xkr6	BC024502|Xrg6	X Kell blood group precursor related family member 6 homolog	protein-coding
diff_RLAGL_Vector_cond1_1670	chr11	58420893	58421175	+	7.24885	NA	promoter-TSS (NM_027239)	promoter-TSS (NM_027239)	-77	NM_027239	69864	Mm.45641	NM_027239	ENSMUSG00000013653	1810065E05Rik	AV047390	RIKEN cDNA 1810065E05 gene	protein-coding
diff_RLAGL_Vector_cond1_6567	chr3	121955331	121955637	+	7.24818	NA	intron (NM_172525, intron 1 of 22)	intron (NM_172525, intron 1 of 22)	2158	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding
diff_RLAGL_Vector_cond1_10325	chr9	116762518	116762762	+	7.24785	NA	intron (NM_001172122, intron 6 of 13)	intron (NM_001172122, intron 6 of 13)	489843	NM_001172124	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
diff_RLAGL_Vector_cond1_2235	chr12	52155009	52155226	+	7.24420	NA	intron (NM_029760, intron 4 of 10)	intron (NM_029760, intron 4 of 10)	57371	NM_029760	76826	Mm.244781	NM_029760		Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding
diff_RLAGL_Vector_cond1_4913	chr18	62921932	62922709	+	7.23943	NA	promoter-TSS (NM_133237)	promoter-TSS (NM_133237)	-7	NM_133237	494504	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding
diff_RLAGL_Vector_cond1_651	chr1	167688489	167689158	+	7.23765	NA	promoter-TSS (NM_033652)	promoter-TSS (NM_033652)	-735	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding
diff_RLAGL_Vector_cond1_161	chr1	44118767	44118993	+	7.23752	NA	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	-107	NM_023645	72050	Mm.281714	NM_023645	ENSMUSG00000026047	Kdelc1	1810049A15Rik|5730416C13Rik|EP58|Kdel1	KDEL (Lys-Asp-Glu-Leu) containing 1	protein-coding
diff_RLAGL_Vector_cond1_1715	chr11	68691608	68691939	+	7.23552	NA	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-142	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding
diff_RLAGL_Vector_cond1_4351	chr17	28313234	28313807	+	7.23358	NA	promoter-TSS (NR_028297)	promoter-TSS (NR_028297)	-10	NM_001163819	72775	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding
diff_RLAGL_Vector_cond1_8497	chr6	96205462	96205694	+	7.23311	NA	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	-39373	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo
diff_RLAGL_Vector_cond1_5534	chr2	67565454	67566012	+	7.23298	NA	Intergenic	CpG	-109724	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA
diff_RLAGL_Vector_cond1_3852	chr16	8513236	8513533	+	7.23286	NA	promoter-TSS (NM_172961)	promoter-TSS (NM_172961)	-45	NM_172961	268860	Mm.259315	NM_172961	ENSMUSG00000057880	Abat	9630038C02Rik|AI255750|ENSMUSG00000051226|Gabaat|Gabat|Gm9851|I54|Laibat|X61497	4-aminobutyrate aminotransferase	protein-coding
diff_RLAGL_Vector_cond1_4586	chr17	73086812	73087441	+	7.23235	NA	Intergenic	Intergenic	-20859	NM_001177968	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_590	chr1	155158579	155158824	+	7.23207	NA	promoter-TSS (NM_021433)	promoter-TSS (NM_021433)	-2	NM_021433	58244	Mm.66264	NM_021433		Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding
diff_RLAGL_Vector_cond1_4538	chr17	64600485	64600813	+	7.23201	NA	promoter-TSS (NM_008549)	promoter-TSS (NM_008549)	-1000	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_3561	chr15	44740461	44740757	+	7.23100	NA	intron (NM_001032727, intron 1 of 5)	intron (NM_001032727, intron 1 of 5)	8063	NM_001285840	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
diff_RLAGL_Vector_cond1_438	chr1	118628223	118628469	+	7.23031	NA	intron (NM_023755, intron 1 of 14)	intron (NM_023755, intron 1 of 14)	401	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding
diff_RLAGL_Vector_cond1_5575	chr2	79459139	79459457	+	7.23030	NA	Intergenic	Intergenic	-2662	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding
diff_RLAGL_Vector_cond1_5341	chr2	22754298	22754728	+	7.23019	NA	Intergenic	MLTR18C_MM|LTR|ERVK	-19814	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_10028	chr9	38758327	38758531	+	7.23000	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	5633	NM_146787	258783	Mm.131149	NM_146787	ENSMUSG00000061039	Olfr920	MOR165-6	olfactory receptor 920	protein-coding
diff_RLAGL_Vector_cond1_1281	chr10	100487279	100487902	+	7.22956	NA	promoter-TSS (NM_146009)	promoter-TSS (NM_146009)	-243	NM_001033332	237500	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding
diff_RLAGL_Vector_cond1_5506	chr2	61798197	61798424	+	7.22699	NA	intron (NM_021526, intron 11 of 11)	intron (NM_021526, intron 11 of 11)	-6143	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding
diff_RLAGL_Vector_cond1_728	chr1	179723168	179723392	+	7.22606	NA	Intergenic	RLTR40|LTR|ERVK	55049	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding
diff_RLAGL_Vector_cond1_1336	chr10	111503719	111503992	+	7.22535	NA	Intergenic	Intergenic	-2431	NM_009344	21664	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology-like domain, family A, member 1	protein-coding
diff_RLAGL_Vector_cond1_3791	chr15	95794702	95795117	+	7.22493	NA	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	4066	NM_175344	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding
diff_RLAGL_Vector_cond1_10501	chrX	98890905	98891163	+	7.22365	NA	promoter-TSS (NM_052976)	promoter-TSS (NM_052976)	-9	NM_001313754	94190	Mm.33536	NM_052976		Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding
diff_RLAGL_Vector_cond1_3482	chr15	17181443	17181911	+	7.22356	NA	Intergenic	MERVL_2A-int|LTR|ERVL	403576	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
diff_RLAGL_Vector_cond1_8469	chr6	90462369	90462766	+	7.22320	NA	promoter-TSS (NM_023184)	promoter-TSS (NM_023184)	-59	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding
diff_RLAGL_Vector_cond1_5636	chr2	93176859	93177297	+	7.22267	NA	Intergenic	Intergenic	-10506	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding
diff_RLAGL_Vector_cond1_5442	chr2	48441336	48441789	+	7.22145	NA	Intergenic	Intergenic	-372547	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
diff_RLAGL_Vector_cond1_8946	chr7	43671745	43671968	+	7.22051	NA	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-175	NM_145582	233189	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1 homolog (S. pombe)	protein-coding
diff_RLAGL_Vector_cond1_576	chr1	152790305	152790594	+	7.21989	NA	Intergenic	B3|SINE|B2	-9704	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding
diff_RLAGL_Vector_cond1_9036	chr7	68302673	68302885	+	7.21916	NA	intron (NM_001013811, intron 2 of 8)	intron (NM_001013811, intron 2 of 8)	-26185	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA
diff_RLAGL_Vector_cond1_3747	chr15	86092288	86092621	+	7.21848	NA	intron (NM_001205353, intron 2 of 18)	intron (NM_001205353, intron 2 of 18)	33727	NM_001205353	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_7771	chr5	69592037	69592533	+	7.21759	NA	promoter-TSS (NM_001038015)	promoter-TSS (NM_001038015)	0	NM_001038015	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding
diff_RLAGL_Vector_cond1_8259	chr6	34688717	34689047	+	7.21494	NA	Intergenic	Intergenic	-20562	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding
diff_RLAGL_Vector_cond1_6261	chr3	38484912	38485397	+	7.21480	NA	promoter-TSS (NM_001167883)	promoter-TSS (NM_001167883)	-338	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding
diff_RLAGL_Vector_cond1_3567	chr15	46623760	46623981	+	7.21405	NA	intron (NR_045811, intron 1 of 3)	ERVB5_1-LTR_MM|LTR|ERVK	565	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA
diff_RLAGL_Vector_cond1_2343	chr12	85430383	85430839	+	7.21329	NA	Intergenic	Intergenic	-43290	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding
diff_RLAGL_Vector_cond1_3980	chr16	43807243	43807567	+	7.21266	NA	exon (NM_007877, exon 3 of 7)	exon (NM_007877, exon 3 of 7)	45163	NM_007877	13490	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding
diff_RLAGL_Vector_cond1_3360	chr14	118273198	118273468	+	7.21237	NA	Intergenic	Intergenic	6175	NM_001101609	668814	Mm.425909	NM_001101609		Gm9376	EG668814	predicted gene 9376	protein-coding
diff_RLAGL_Vector_cond1_9119	chr7	90265661	90265902	+	7.21210	NA	promoter-TSS (NM_183293)	promoter-TSS (NM_183293)	-349	NR_111924	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding
diff_RLAGL_Vector_cond1_7944	chr5	115301113	115301395	+	7.21074	NA	promoter-TSS (NM_019682)	promoter-TSS (NM_019682)	134	NR_131932	102639268	Mm.319998	NR_131932		Gm13830	OTTMUSG00000014646	predicted gene 13830	ncRNA
diff_RLAGL_Vector_cond1_39	chr1	9748298	9748640	+	7.21043	NA	promoter-TSS (NM_173443)	promoter-TSS (NM_173443)	-87	NM_173443	70675	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_2702	chr13	58402632	58402998	+	7.20988	NA	promoter-TSS (NM_025279)	promoter-TSS (NM_025279)	218	NM_001168248	74386	Mm.85289	NM_028904	ENSMUSG00000035367	Rmi1	4932432N11Rik|C79893	RMI1, RecQ mediated genome instability 1	protein-coding
diff_RLAGL_Vector_cond1_6858	chr4	18189296	18189527	+	7.20951	NA	Intergenic	URR1A|DNA|hAT-Charlie	335929	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
diff_RLAGL_Vector_cond1_10292	chr9	108104897	108105301	+	7.20913	NA	exon (NM_007567, exon 7 of 12)	exon (NM_007567, exon 7 of 12)	-10619	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding
diff_RLAGL_Vector_cond1_1028	chr10	45486660	45487080	+	7.20858	NA	Intergenic	Intergenic	-16669	NM_001031772	380669	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_3811	chr15	99972728	99972938	+	7.20813	NA	promoter-TSS (NM_001284521)	promoter-TSS (NM_001284521)	53	NM_001284521	207214	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding
diff_RLAGL_Vector_cond1_1029	chr10	45577697	45578429	+	7.20764	NA	5' UTR (NM_172473, exon 1 of 24)	5' UTR (NM_172473, exon 1 of 24)	234	NM_172473	209462	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding
diff_RLAGL_Vector_cond1_1873	chr11	99113172	99113385	+	7.20617	NA	Intergenic	Intergenic	-23972	NM_172564	217169	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding
diff_RLAGL_Vector_cond1_7018	chr4	63037586	63037921	+	7.20534	NA	intron (NM_028326, intron 1 of 14)	intron (NM_028326, intron 1 of 14)	72179	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding
diff_RLAGL_Vector_cond1_1978	chr11	117332284	117332507	+	7.20426	NA	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	82	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding
diff_RLAGL_Vector_cond1_2130	chr12	25251501	25251789	+	7.20414	NA	Intergenic	Intergenic	122471	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA
diff_RLAGL_Vector_cond1_1955	chr11	115277089	115277324	+	7.20328	NA	promoter-TSS (NM_007997)	promoter-TSS (NM_007997)	-237	NM_007997	14149	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	-	ferredoxin reductase	protein-coding
diff_RLAGL_Vector_cond1_8088	chr5	144223484	144223866	+	7.20300	NA	promoter-TSS (NM_027410)	promoter-TSS (NM_027410)	-97	NM_027410	70381	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding
diff_RLAGL_Vector_cond1_4683	chr17	90059362	90059600	+	7.20157	NA	exon (NM_177284, exon 20 of 21)	exon (NM_177284, exon 20 of 21)	680240	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
diff_RLAGL_Vector_cond1_8957	chr7	45339692	45340049	+	7.20019	NA	TTS (NM_010473)	TTS (NM_010473)	4601	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding
diff_RLAGL_Vector_cond1_6886	chr4	25281415	25282010	+	7.19907	NA	exon (NM_026194, exon 1 of 19)	exon (NM_026194, exon 1 of 19)	109	NM_026194	67490	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding
diff_RLAGL_Vector_cond1_8579	chr6	116650368	116650609	+	7.19808	NA	promoter-TSS (NM_145980)	promoter-TSS (NM_145980)	-196	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding
diff_RLAGL_Vector_cond1_7207	chr4	111648665	111648970	+	7.19750	NA	intron (NM_030231, intron 11 of 12)	intron (NM_030231, intron 11 of 12)	-71193	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding
diff_RLAGL_Vector_cond1_3286	chr14	100284940	100285236	+	7.19743	NA	Intergenic	Intergenic	-135292	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
diff_RLAGL_Vector_cond1_5048	chr19	4510190	4510702	+	7.19677	NA	promoter-TSS (NM_001162946)	promoter-TSS (NM_001162946)	-26	NM_001162946	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding
diff_RLAGL_Vector_cond1_2607	chr13	28532342	28532592	+	7.19625	NA	intron (NR_045053, intron 7 of 8)	intron (NR_045053, intron 7 of 8)	178406	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA
diff_RLAGL_Vector_cond1_9831	chr8	121125289	121125856	+	7.19601	NA	Intergenic	CpG	-2113	NM_008024	14241	Mm.5111	NM_008024	ENSMUSG00000097084	Foxl1	FREAC7|Fkh6|fkh-6	forkhead box L1	protein-coding
diff_RLAGL_Vector_cond1_10367	chr9	122104465	122104791	+	7.19253	NA	Intergenic	Intergenic	-12638	NM_001164572	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding
diff_RLAGL_Vector_cond1_1995	chr11	118475633	118475915	+	7.19195	NA	Intergenic	Intergenic	-1186	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding
diff_RLAGL_Vector_cond1_6324	chr3	57735550	57736368	+	7.19114	NA	promoter-TSS (NM_001113413)	promoter-TSS (NM_001113413)	-103	NM_001113413	24017	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding
diff_RLAGL_Vector_cond1_8357	chr6	59161916	59162177	+	7.18978	NA	Intergenic	Intergenic	-46824	NM_001081145	68140	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding
diff_RLAGL_Vector_cond1_164	chr1	44388071	44388530	+	7.18793	NA	Intergenic	RMER16_Mm|LTR|ERVK	-163371	NM_028450	70676	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_962	chr10	30842646	30843085	+	7.18712	NA	promoter-TSS (NM_013904)	promoter-TSS (NM_013904)	-82	NM_013904	15214	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding
diff_RLAGL_Vector_cond1_8144	chr6	5314996	5315307	+	7.18535	NA	Intergenic	Lx8|LINE|L1	-16778	NM_183308	330260	Mm.126984	NM_183308		Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding
diff_RLAGL_Vector_cond1_8557	chr6	113306508	113306880	+	7.18480	NA	promoter-TSS (NM_030178)	promoter-TSS (NM_030178)	-443	NM_001282128	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding
diff_RLAGL_Vector_cond1_10562	chrX	139812836	139813271	+	7.18471	NA	Intergenic	Intergenic	12245	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding
diff_RLAGL_Vector_cond1_6801	chr4	5587535	5587807	+	7.18458	NA	Intergenic	MIR|SINE|MIR	-44657	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA
diff_RLAGL_Vector_cond1_5284	chr2	12923753	12924657	+	7.18422	NA	intron (NM_008961, intron 1 of 4)	intron (NM_008961, intron 1 of 4)	164	NM_001305436	19212	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding
diff_RLAGL_Vector_cond1_6479	chr3	98413737	98413978	+	7.18360	NA	intron (NM_172863, intron 1 of 2)	L1MC5|LINE|L1	31376	NM_172863	242109	Mm.358911	NM_172863	ENSMUSG00000050064	Zfp697	9430053K19|AI467503|Znf697	zinc finger protein 697	protein-coding
diff_RLAGL_Vector_cond1_9769	chr8	109381464	109381743	+	7.18297	NA	Intergenic	Intergenic	-40695	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo
diff_RLAGL_Vector_cond1_5762	chr2	124858444	124858971	+	7.18132	NA	Intergenic	G-rich|Low_complexity|Low_complexity	205126	NM_199240	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
diff_RLAGL_Vector_cond1_3080	chr14	34275284	34275491	+	7.18054	NA	intron (NM_029389, intron 2 of 10)	intron (NM_029389, intron 2 of 10)	35116	NM_029389	75698	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding
diff_RLAGL_Vector_cond1_3133	chr14	52257716	52258124	+	7.17814	NA	Intergenic	CpG	-20348	NM_201637	67772	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding
diff_RLAGL_Vector_cond1_1609	chr11	36832851	36833091	+	7.17764	NA	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	111270	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
diff_RLAGL_Vector_cond1_10409	chrX	20364389	20364591	+	7.17671	NA	promoter-TSS (NM_001290643)	promoter-TSS (NM_001290643)	9	NM_001290644	19889	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog (human)	protein-coding
diff_RLAGL_Vector_cond1_6814	chr4	8427901	8428109	+	7.17626	NA	Intergenic	Intergenic	-107639	NM_021518	59021	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_26	chr1	8331316	8331516	+	7.17585	NA	Intergenic	RLTR22_Mur|LTR|ERVK	968461	NM_027671	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_5313	chr2	18392691	18393025	+	7.17488	NA	promoter-TSS (NM_007869)	promoter-TSS (NM_007869)	-28	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ (Hsp40) homolog, subfamily C, member 1	protein-coding
diff_RLAGL_Vector_cond1_5488	chr2	58532367	58532567	+	7.17484	NA	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	34361	NM_001110205	11477	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding
diff_RLAGL_Vector_cond1_9963	chr9	22537849	22538227	+	7.17471	NA	intron (NM_181316, intron 5 of 21)	intron (NM_181316, intron 5 of 21)	62323	NM_181316	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding
diff_RLAGL_Vector_cond1_6682	chr3	145798880	145799177	+	7.17320	NA	intron (NM_026993, intron 1 of 5)	intron (NM_026993, intron 1 of 5)	40336	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding
diff_RLAGL_Vector_cond1_2651	chr13	42253887	42254158	+	7.17285	NA	Intergenic	Intergenic	-47248	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|preproET	endothelin 1	protein-coding
diff_RLAGL_Vector_cond1_1066	chr10	57848450	57848649	+	7.17031	NA	Intergenic	Intergenic	54005	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding
diff_RLAGL_Vector_cond1_6042	chr2	169632470	169632749	+	7.16985	NA	Intergenic	Intergenic	-1037	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
diff_RLAGL_Vector_cond1_3162	chr14	61037660	61038058	+	7.16974	NA	5' UTR (NM_001164155, exon 1 of 10)	5' UTR (NM_001164155, exon 1 of 10)	128	NM_001164155	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding
diff_RLAGL_Vector_cond1_5138	chr19	29948212	29948503	+	7.16964	NA	intron (NM_001164724, intron 1 of 7)	intron (NM_001164724, intron 1 of 7)	2567	NM_001164724	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding
diff_RLAGL_Vector_cond1_3816	chr15	100600059	100600294	+	7.16949	NA	promoter-TSS (NM_001304965)	promoter-TSS (NM_001304965)	-192	NM_001304965	19009	Mm.28825	NM_010127		Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_2649	chr13	41343903	41344188	+	7.16945	NA	intron (NM_001111324, intron 2 of 7)	MLTR14|LTR|ERV1	14956	NM_017464	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding
diff_RLAGL_Vector_cond1_4447	chr17	46674211	46674505	+	7.16798	NA	promoter-TSS (NM_144857)	promoter-TSS (NM_144857)	-103	NM_144857	224823	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_7943	chr5	115181473	115181760	+	7.16737	NA	intron (NM_013879, intron 1 of 6)	intron (NM_013879, intron 1 of 6)	4505	NM_001310715	29867	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_7947	chr5	115506406	115506610	+	7.16726	NA	promoter-TSS (NM_133915)	promoter-TSS (NM_133915)	-168	NM_133915	19303	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding
diff_RLAGL_Vector_cond1_4601	chr17	75444002	75444324	+	7.16543	NA	intron (NM_001166493, intron 1 of 16)	intron (NM_001166493, intron 1 of 16)	8258	NM_001166493	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding
diff_RLAGL_Vector_cond1_3364	chr14	118678518	118679022	+	7.16495	NA	intron (NM_001163676, intron 1 of 29)	MER77B|LTR|ERVL	-1839	NM_001163675	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
diff_RLAGL_Vector_cond1_10550	chrX	134307882	134308132	+	7.16408	NA	promoter-TSS (NM_001305631)	promoter-TSS (NM_001305631)	-77	NM_001305631	102920	Mm.34903	NM_145924	ENSMUSG00000031262	Cenpi	CENP-I|Fshprh1	centromere protein I	protein-coding
diff_RLAGL_Vector_cond1_10582	chrX	153311492	153311778	+	7.16404	NA	intron (NM_173780, intron 2 of 6)	intron (NM_173780, intron 2 of 6)	73590	NM_173780	245671	Mm.260751	NM_173780	ENSMUSG00000041649	Klf8	A830097P10Rik|BKLF3|ZNF74	Kruppel-like factor 8	protein-coding
diff_RLAGL_Vector_cond1_5843	chr2	138273907	138274339	+	7.16367	NA	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	-4370	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_1360	chr10	116950082	116950317	+	7.16292	NA	promoter-TSS (NR_038026)	promoter-TSS (NR_038026)	181	NM_001003950	216363	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding
diff_RLAGL_Vector_cond1_3859	chr16	10694574	10694905	+	7.16201	NA	exon (NM_177562, exon 21 of 23)	exon (NM_177562, exon 21 of 23)	90797	NM_001271603	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding
diff_RLAGL_Vector_cond1_7808	chr5	81427413	81427723	+	7.16113	NA	intron (NM_198702, intron 6 of 27)	intron (NM_198702, intron 6 of 27)	405975	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
diff_RLAGL_Vector_cond1_2879	chr13	93683353	93683629	+	7.16035	NA	intron (NM_028772, intron 2 of 15)	ORR1B1|LTR|ERVL-MaLR	9055	NM_028772	74129	Mm.21789	NM_028772	ENSMUSG00000042102	Dmgdh	1200014D15Rik|AI787269	dimethylglycine dehydrogenase precursor	protein-coding
diff_RLAGL_Vector_cond1_3484	chr15	19584867	19585096	+	7.16028	NA	Intergenic	RLTR22_Mur|LTR|ERVK	764652	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
diff_RLAGL_Vector_cond1_4499	chr17	55959352	55959587	+	7.16021	NA	promoter-TSS (NR_108021)	promoter-TSS (NR_108021)	-68	NR_108021	100504333	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA
diff_RLAGL_Vector_cond1_6673	chr3	145086955	145087168	+	7.15880	NA	intron (NM_178697, intron 6 of 13)	intron (NM_178697, intron 6 of 13)	11980	NM_178697	229933	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding
diff_RLAGL_Vector_cond1_9508	chr8	45627668	45628271	+	7.15609	NA	5' UTR (NM_001310707, exon 1 of 24)	5' UTR (NM_001310707, exon 1 of 24)	218	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777	sorbin and SH3 domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_3172	chr14	62825685	62825993	+	7.15539	NA	intron (NR_045503, intron 4 of 6)	intron (NR_045503, intron 4 of 6)	-11851	NM_175546	268752	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_9912	chr9	12815111	12815317	+	7.15463	NA	Intergenic	Intergenic	290641	NR_040755	78219	Mm.414868	NR_040755		4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA
diff_RLAGL_Vector_cond1_6931	chr4	39067352	39067711	+	7.15459	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-382762	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
diff_RLAGL_Vector_cond1_3596	chr15	54164392	54164703	+	7.15400	NA	Intergenic	LTR10_RN|LTR|ERVK	113937	NM_008764	18383	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding
diff_RLAGL_Vector_cond1_1980	chr11	117338551	117338925	+	7.15389	NA	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	6425	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding
diff_RLAGL_Vector_cond1_6362	chr3	66650358	66650702	+	7.15253	NA	Intergenic	Intergenic	328281	NM_001302358	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_5631	chr2	92645514	92645720	+	7.15120	NA	Intergenic	Intergenic	45910	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_10164	chr9	76722106	76722331	+	7.14988	NA	Intergenic	MurERV4-int|LTR|ERVK	-176414	NM_001045518	208994	Mm.256929	NM_001045518	ENSMUSG00000032358	Fam83b	C530008M07Rik|Gm516	family with sequence similarity 83, member B	protein-coding
diff_RLAGL_Vector_cond1_3350	chr14	115040541	115041060	+	7.14942	NA	Intergenic	CpG	-2871	NR_029785	723905		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA
diff_RLAGL_Vector_cond1_7664	chr5	40116929	40117175	+	7.14790	NA	Intergenic	Intergenic	-472421	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_891	chr10	13240547	13240825	+	7.14692	NA	intron (NM_001195065, intron 8 of 12)	intron (NM_001195065, intron 8 of 12)	-47549	NM_181470	353258	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_4881	chr18	51130653	51130911	+	7.14675	NA	intron (NM_001081224, intron 1 of 1)	intron (NM_001081224, intron 1 of 1)	12884	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding
diff_RLAGL_Vector_cond1_449	chr1	120091073	120091657	+	7.14438	NA	Intergenic	Intergenic	-17585	NM_019432	170706	Mm.24750	NM_019432		Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding
diff_RLAGL_Vector_cond1_7731	chr5	52834011	52834228	+	7.14374	NA	promoter-TSS (NM_024213)	promoter-TSS (NM_024213)	-16	NM_024213	52206	Mm.272568	NM_024213		Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding
diff_RLAGL_Vector_cond1_2059	chr12	8916446	8916676	+	7.14366	NA	Intergenic	Intergenic	-4746	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding
diff_RLAGL_Vector_cond1_10014	chr9	36767504	36767892	+	7.14149	NA	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-120	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10543	chrX	133650422	133650640	+	7.13881	NA	intron (NM_001105245, intron 3 of 5)	intron (NM_001105245, intron 3 of 5)	38462	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding
diff_RLAGL_Vector_cond1_3312	chr14	103070061	103070519	+	7.13765	NA	promoter-TSS (NM_001033242)	promoter-TSS (NM_001033242)	74	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding
diff_RLAGL_Vector_cond1_4273	chr17	14372435	14372686	+	7.13715	NA	intron (NM_022315, intron 8 of 12)	intron (NM_022315, intron 8 of 12)	26382	NR_027986	74917	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA
diff_RLAGL_Vector_cond1_3685	chr15	73602003	73602261	+	7.13539	NA	intron (NM_001033219, intron 2 of 7)	intron (NM_001033219, intron 2 of 7)	-5606	NM_001168255	106068	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding
diff_RLAGL_Vector_cond1_9284	chr7	135986001	135986418	+	7.13527	NA	Intergenic	Intergenic	-269830	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding
diff_RLAGL_Vector_cond1_6876	chr4	23408222	23408507	+	7.13423	NA	Intergenic	Intergenic	917816	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
diff_RLAGL_Vector_cond1_6861	chr4	20024011	20024226	+	7.13119	NA	intron (NM_015767, intron 4 of 4)	intron (NM_015767, intron 4 of 4)	15690	NM_015767	50500	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding
diff_RLAGL_Vector_cond1_6093	chr2	174660364	174660722	+	7.12939	NA	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	17009	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding
diff_RLAGL_Vector_cond1_4574	chr17	71002175	71002593	+	7.12718	NA	5' UTR (NM_026064, exon 1 of 4)	5' UTR (NM_026064, exon 1 of 4)	149	NM_026064	67268	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding
diff_RLAGL_Vector_cond1_5174	chr19	45363375	45363853	+	7.12616	NA	promoter-TSS (NM_009771)	promoter-TSS (NM_009771)	-120	NM_009771	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding
diff_RLAGL_Vector_cond1_490	chr1	133375988	133376334	+	7.12505	NA	intron (NM_175443, intron 5 of 7)	intron (NM_175443, intron 5 of 7)	12589	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding
diff_RLAGL_Vector_cond1_2124	chr12	24571931	24572343	+	7.12490	NA	promoter-TSS (NM_001161406)	promoter-TSS (NM_001161406)	-150	NM_001161406	195733	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead-like 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1615	chr11	40402380	40402621	+	7.12479	NA	Intergenic	Intergenic	290182	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding
diff_RLAGL_Vector_cond1_6390	chr3	74534052	74534585	+	7.12460	NA	Intergenic	L1_Mur2|LINE|L1	-517041	NR_040450	100504692	Mm.394454	NR_040450	ENSMUSG00000104096	Gm20356	-	predicted gene, 20356	ncRNA
diff_RLAGL_Vector_cond1_4231	chr17	3557391	3558094	+	7.12454	NA	promoter-TSS (NM_146074)	promoter-TSS (NM_146074)	-29	NM_146074	224481	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207	transcription factor B1, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_225	chr1	65841093	65841395	+	7.12379	NA	Intergenic	Intergenic	-85278	NM_027010	12969	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding
diff_RLAGL_Vector_cond1_8944	chr7	43466196	43466701	+	7.12354	NA	exon (NM_001290316, exon 5 of 10)	exon (NM_001290316, exon 5 of 10)	3215	NM_001290316	75690	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding
diff_RLAGL_Vector_cond1_1594	chr11	33163236	33163470	+	7.12215	NA	promoter-TSS (NM_008722)	promoter-TSS (NM_008722)	-147	NM_001252261	18148	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding
diff_RLAGL_Vector_cond1_9622	chr8	72475017	72475355	+	7.12117	NA	promoter-TSS (NM_138585)	promoter-TSS (NM_138585)	47	NM_138585	27967	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding
diff_RLAGL_Vector_cond1_2364	chr12	91161085	91161325	+	7.12042	NA	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	50976	NR_030473	735273		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA
diff_RLAGL_Vector_cond1_6443	chr3	88685503	88685755	+	7.12041	NA	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-165	NM_028814	74200	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding
diff_RLAGL_Vector_cond1_7934	chr5	114130659	114131100	+	7.12024	NA	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	-277	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding
diff_RLAGL_Vector_cond1_7179	chr4	105460008	105460366	+	7.11969	NA	Intergenic	RMER15|LTR|ERVL	302840	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding
diff_RLAGL_Vector_cond1_1015	chr10	40349052	40349390	+	7.11691	NA	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-87	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding
diff_RLAGL_Vector_cond1_10438	chrX	53643652	53643973	+	7.11659	NA	promoter-TSS (NM_024170)	promoter-TSS (NM_024170)	-49	NM_024170	66158	Mm.391252	NM_024170	ENSMUSG00000067925	Cxx1a	1110012O05Rik|Mar8.2A/B|Mart8b	CAAX box 1A	protein-coding
diff_RLAGL_Vector_cond1_8441	chr6	86599965	86600426	+	7.11550	NA	Intergenic	Intergenic	-27979	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding
diff_RLAGL_Vector_cond1_9406	chr8	20122099	20122413	+	7.11495	NA	Intergenic	CpG	175176	NR_030708	547150	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo
diff_RLAGL_Vector_cond1_9961	chr9	22070735	22070994	+	7.11493	NA	promoter-TSS (NR_040407)	promoter-TSS (NR_040407)	-138	NR_040406	100503652	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA
diff_RLAGL_Vector_cond1_870	chr10	9265623	9265844	+	7.11455	NA	Intergenic	Intergenic	-379663	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4135	chr16	79058831	79059386	+	7.11419	NA	intron (NM_008941, intron 9 of 27)	intron (NM_008941, intron 9 of 27)	31989	NM_008941	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
diff_RLAGL_Vector_cond1_5125	chr19	26845323	26845582	+	7.11390	NA	Intergenic	Intergenic	-21545	NR_045306	70942	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA
diff_RLAGL_Vector_cond1_7418	chr4	144782521	144782787	+	7.11267	NA	intron (NM_001126316, intron 1 of 3)	RLTR22_Mur|LTR|ERVK	3929	NM_001126316	329993	Mm.297407	NM_001126316	ENSMUSG00000078504	Gm438	-	predicted gene 438	protein-coding
diff_RLAGL_Vector_cond1_2938	chr13	113293049	113293283	+	7.11217	NA	Intergenic	CpG	83507	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding
diff_RLAGL_Vector_cond1_5716	chr2	114174993	114175529	+	7.11137	NA	promoter-TSS (NM_009702)	promoter-TSS (NM_009702)	78	NM_009702	11834	Mm.2545	NM_009702	ENSMUSG00000040383	Aqr	AW495846|mKIAA0560	aquarius	protein-coding
diff_RLAGL_Vector_cond1_2977	chr13	119613997	119614357	+	7.11082	NA	Intergenic	Intergenic	-9642	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding
diff_RLAGL_Vector_cond1_7644	chr5	36712968	36713534	+	7.11030	NA	Intergenic	Intergenic	-17230	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232|mKIAA0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding
diff_RLAGL_Vector_cond1_2198	chr12	40445447	40446478	+	7.10953	NA	promoter-TSS (NM_172803)	promoter-TSS (NM_172803)	-91	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding
diff_RLAGL_Vector_cond1_182	chr1	52844783	52845130	+	7.10907	NA	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-82	NM_146108	227095	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding
diff_RLAGL_Vector_cond1_7926	chr5	113153416	113153756	+	7.10902	NA	intron (NM_172884, intron 1 of 7)	intron (NM_172884, intron 1 of 7)	9727	NM_172884	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding
diff_RLAGL_Vector_cond1_3233	chr14	79260081	79260288	+	7.10777	NA	Intergenic	Intergenic	-12817	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding
diff_RLAGL_Vector_cond1_6439	chr3	88425150	88425390	+	7.10603	NA	promoter-TSS (NM_001281795)	promoter-TSS (NM_001281795)	-129	NM_001145877	229517	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding
diff_RLAGL_Vector_cond1_10186	chr9	83563850	83564092	+	7.10565	NA	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	15633	NM_172507	212531	Mm.491246	NM_172507		Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding
diff_RLAGL_Vector_cond1_5167	chr19	43441196	43441411	+	7.10533	NA	exon (NM_031396, exon 1 of 11)	exon (NM_031396, exon 1 of 11)	867	NM_031396	83674	Mm.329864	NM_031396	ENSMUSG00000025189	Cnnm1	AI846314|Acdp1|CLP-1	cyclin M1	protein-coding
diff_RLAGL_Vector_cond1_6777	chr3	159477459	159477925	+	7.10507	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-17741	NM_001172092	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding
diff_RLAGL_Vector_cond1_7638	chr5	35737212	35737740	+	7.10369	NA	Intergenic	Intergenic	-8200	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding
diff_RLAGL_Vector_cond1_6220	chr3	24782880	24783164	+	7.10282	NA	Intergenic	Intergenic	1370285	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
diff_RLAGL_Vector_cond1_1147	chr10	78481900	78482117	+	7.10214	NA	Intergenic	CpG	-17060	NM_172134	216134	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding
diff_RLAGL_Vector_cond1_1506	chr11	12037119	12037584	+	7.10171	NA	promoter-TSS (NM_010345)	promoter-TSS (NM_010345)	69	NM_010345	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding
diff_RLAGL_Vector_cond1_3445	chr15	8569716	8569997	+	7.09936	NA	Intergenic	Intergenic	-125393	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7558	chr5	17648848	17649240	+	7.09788	NA	intron (NM_013657, intron 2 of 17)	intron (NM_013657, intron 2 of 17)	74228	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding
diff_RLAGL_Vector_cond1_10417	chrX	37110247	37110559	+	7.09777	NA	promoter-TSS (NM_026573)	promoter-TSS (NM_026573)	-81	NM_026573	68134	Mm.271160	NM_026573	ENSMUSG00000036572	Upf3b	5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X	UPF3 regulator of nonsense transcripts homolog B (yeast)	protein-coding
diff_RLAGL_Vector_cond1_10469	chrX	77796205	77796409	+	7.09734	NA	promoter-TSS (NM_016979)	promoter-TSS (NM_016979)	-347	NM_016979	19108	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding
diff_RLAGL_Vector_cond1_3315	chr14	103286744	103287017	+	7.09686	NA	intron (NM_207215, intron 13 of 84)	intron (NM_207215, intron 13 of 84)	59920	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_8285	chr6	42245720	42246009	+	7.09573	NA	promoter-TSS (NM_029555)	promoter-TSS (NM_029555)	-71	NM_029555	76263	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding
diff_RLAGL_Vector_cond1_48	chr1	12875484	12875769	+	7.09394	NA	intron (NM_172841, intron 8 of 8)	intron (NM_172841, intron 8 of 8)	115509	NM_172841	240726	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding
diff_RLAGL_Vector_cond1_10200	chr9	87255235	87255896	+	7.09346	NA	promoter-TSS (NM_199316)	promoter-TSS (NM_199316)	-33	NM_199316	382090	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding
diff_RLAGL_Vector_cond1_1477	chr11	7561579	7561813	+	7.09324	NA	Intergenic	Intergenic	-347773	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_9140	chr7	98177790	98178145	+	7.09198	NA	intron (NR_045972, intron 1 of 2)	CpG	307	NM_007602	12337	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding
diff_RLAGL_Vector_cond1_222	chr1	65186580	65186819	+	7.08999	NA	promoter-TSS (NM_011086)	promoter-TSS (NM_011086)	14	NM_001310624	18711	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE finger containing	protein-coding
diff_RLAGL_Vector_cond1_1959	chr11	115779003	115779565	+	7.08978	NA	intron (NM_028014, intron 2 of 31)	intron (NM_028014, intron 2 of 31)	13851	NM_028014	71947	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding
diff_RLAGL_Vector_cond1_1052	chr10	53750930	53751317	+	7.08935	NA	promoter-TSS (NM_001081428)	promoter-TSS (NM_001081428)	-214	NM_001081428	75906	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding
diff_RLAGL_Vector_cond1_1963	chr11	115877255	115877474	+	7.08776	NA	Intergenic	Intergenic	-22775	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding
diff_RLAGL_Vector_cond1_5391	chr2	32428349	32428586	+	7.08774	NA	intron (NM_001164357, intron 1 of 9)	intron (NM_001164357, intron 1 of 9)	2684	NM_001164358	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding
diff_RLAGL_Vector_cond1_1867	chr11	98751517	98751761	+	7.08747	NA	intron (NM_001313983, intron 1 of 9)	intron (NM_001313983, intron 1 of 9)	9854	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding
diff_RLAGL_Vector_cond1_199	chr1	58859908	58860123	+	7.08735	NA	Intergenic	Intergenic	57513	NM_001277926	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding
diff_RLAGL_Vector_cond1_4906	chr18	61018299	61018654	+	7.08674	NA	TTS (NM_009880)	TTS (NM_009880)	-4277	NM_201353	240332	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding
diff_RLAGL_Vector_cond1_2956	chr13	116781707	116782022	+	7.08593	NA	Intergenic	Intergenic	243652	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding
diff_RLAGL_Vector_cond1_2444	chr12	109450000	109450340	+	7.08561	NA	Intergenic	Intergenic	-2653	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6328	chr3	58416675	58416923	+	7.08504	NA	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1110	NM_001081229	72033	Mm.218409	NM_028067	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding
diff_RLAGL_Vector_cond1_5891	chr2	145823005	145823341	+	7.08439	NA	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	37057	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding
diff_RLAGL_Vector_cond1_2628	chr13	33004686	33004979	+	7.08167	NA	intron (NM_009256, intron 1 of 6)	intron (NM_009256, intron 1 of 6)	291	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding
diff_RLAGL_Vector_cond1_354	chr1	91369512	91369806	+	7.08098	NA	intron (NM_173395, intron 3 of 7)	intron (NM_173395, intron 3 of 7)	3229	NM_173395	227358	Mm.389157	NM_173395	ENSMUSG00000047443	Fam132b	4832406C22|myonectin	family with sequence similarity 132, member B	protein-coding
diff_RLAGL_Vector_cond1_7166	chr4	101647064	101647963	+	7.07995	NA	promoter-TSS (NM_175036)	promoter-TSS (NM_175036)	-270	NM_175036	230514	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding
diff_RLAGL_Vector_cond1_7142	chr4	97417994	97418222	+	7.07880	NA	Intergenic	Intergenic	-163835	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
diff_RLAGL_Vector_cond1_2846	chr13	84233214	84233423	+	7.07875	NA	intron (NR_029418, intron 1 of 10)	intron (NR_029418, intron 1 of 10)	11022	NR_029418	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
diff_RLAGL_Vector_cond1_10203	chr9	88327391	88327869	+	7.07865	NA	promoter-TSS (NM_011851)	promoter-TSS (NM_011851)	21	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding
diff_RLAGL_Vector_cond1_9954	chr9	21424592	21424954	+	7.07810	NA	promoter-TSS (NM_001253894)	promoter-TSS (NM_001253894)	-135	NM_001253893	13430	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding
diff_RLAGL_Vector_cond1_7367	chr4	137707330	137707601	+	7.07803	NA	intron (NM_001081155, intron 3 of 24)	CpG	25798	NM_001081155	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding
diff_RLAGL_Vector_cond1_9832	chr8	121652830	121653174	+	7.07612	NA	Intergenic	CpG-14599	-1069	NM_080855	142682	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding
diff_RLAGL_Vector_cond1_9462	chr8	35587946	35588193	+	7.07521	NA	5' UTR (NM_001081279, exon 1 of 3)	5' UTR (NM_001081279, exon 1 of 3)	271	NM_001081279	52065	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding
diff_RLAGL_Vector_cond1_6472	chr3	96220805	96221010	+	7.07489	NA	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	-27	NM_175662	319176	Mm.358954	NM_175662	ENSMUSG00000068855	Hist2h2ac	H2a-613b	histone cluster 2, H2ac	protein-coding
diff_RLAGL_Vector_cond1_8501	chr6	97294058	97294371	+	7.07486	NA	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-41434	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding
diff_RLAGL_Vector_cond1_2493	chr12	118367285	118367968	+	7.07445	NA	Intergenic	Intergenic	-66186	NM_001166385	20688	Mm.34699	NM_009239		Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding
diff_RLAGL_Vector_cond1_10154	chr9	72968568	72968797	+	7.07346	NA	intron (NM_026314, intron 6 of 8)	intron (NM_026314, intron 6 of 8)	9897	NM_001163725	67685	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|EKN1|b2b811Clo	dyslexia susceptibility 1 candidate 1 homolog (human)	protein-coding
diff_RLAGL_Vector_cond1_8073	chr5	140611276	140611617	+	7.07312	NA	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	4105	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
diff_RLAGL_Vector_cond1_5713	chr2	113828953	113829291	+	7.07310	NA	promoter-TSS (NM_009162)	promoter-TSS (NM_009162)	-31	NM_009162	20394	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding
diff_RLAGL_Vector_cond1_9554	chr8	56439552	56439754	+	7.07228	NA	Intergenic	Intergenic	45315	NR_131020	75123	Mm.72666	NR_131020		4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA
diff_RLAGL_Vector_cond1_5771	chr2	126572226	126572432	+	7.07093	NA	intron (NM_011978, intron 4 of 9)	intron (NM_011978, intron 4 of 9)	19305	NM_011978	26458	Mm.290044	NM_011978		Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding
diff_RLAGL_Vector_cond1_3657	chr15	66669536	66669735	+	7.06892	NA	Intergenic	Intergenic	-1135	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding
diff_RLAGL_Vector_cond1_3969	chr16	42138049	42138324	+	7.06874	NA	intron (NM_175548, intron 4 of 5)	B3A|SINE|B2	165283	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
diff_RLAGL_Vector_cond1_1677	chr11	59472346	59472619	+	7.06859	NA	promoter-TSS (NM_178417)	promoter-TSS (NM_178417)	-8	NM_178417	237775	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding
diff_RLAGL_Vector_cond1_716	chr1	177983026	177983523	+	7.06818	NA	Intergenic	CpG	-8161	NM_001034899	545391	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding
diff_RLAGL_Vector_cond1_4613	chr17	77582311	77582575	+	7.06773	NA	Intergenic	RLTR40|LTR|ERVK	-617805	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
diff_RLAGL_Vector_cond1_9577	chr8	62951354	62951821	+	7.06739	NA	intron (NM_023689, intron 1 of 11)	intron (NM_023689, intron 1 of 11)	242	NM_023689	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding
diff_RLAGL_Vector_cond1_2784	chr13	68597267	68598041	+	7.06710	NA	exon (NM_027035, exon 1 of 3)	exon (NM_027035, exon 1 of 3)	215	NM_027035	69315	Mm.272795	NM_027035	ENSMUSG00000021534	1700001L19Rik	-	RIKEN cDNA 1700001L19 gene	protein-coding
diff_RLAGL_Vector_cond1_3462	chr15	10959318	10959642	+	7.06658	NA	intron (NM_001204134, intron 2 of 5)	intron (NM_001204134, intron 2 of 5)	7123	NM_001204134	81799	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding
diff_RLAGL_Vector_cond1_4923	chr18	65490388	65490587	+	7.06552	NA	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59490	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik	MALT1 paracaspase	protein-coding
diff_RLAGL_Vector_cond1_9300	chr7	139281172	139281376	+	7.06411	NA	Intergenic	Intergenic	32792	NM_001033206	101631	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding
diff_RLAGL_Vector_cond1_5692	chr2	110073047	110073335	+	7.06385	NA	Intergenic	ID_B1|SINE|B4	-22712	NR_040508	75517	Mm.363927	NR_040508	ENSMUSG00000086186	Ccdc34os	1700024P03Rik	coiled-coil domain containing 34, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_1882	chr11	100939412	100939938	+	7.06273	NA	promoter-TSS (NM_011486)	promoter-TSS (NM_011486)	-135	NM_213659	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding
diff_RLAGL_Vector_cond1_1746	chr11	74649133	74649452	+	7.06115	NA	promoter-TSS (NM_001081158)	promoter-TSS (NM_001081158)	-203	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding
diff_RLAGL_Vector_cond1_9674	chr8	83955285	83955649	+	7.06056	NA	promoter-TSS (NM_024184)	promoter-TSS (NM_024184)	-227	NM_024184	66929	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding
diff_RLAGL_Vector_cond1_3601	chr15	55280699	55281045	+	7.05973	NA	Intergenic	Intergenic	-26878	NM_181277	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_7222	chr4	114405776	114406182	+	7.05962	NA	promoter-TSS (NM_001085549)	promoter-TSS (NM_001085549)	-745	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding
diff_RLAGL_Vector_cond1_2860	chr13	89739357	89739575	+	7.05920	NA	intron (NM_001134474, intron 1 of 13)	CpG	3046	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding
diff_RLAGL_Vector_cond1_5955	chr2	153778994	153779324	+	7.05723	NA	Intergenic	CpG	-1720	NR_036629	100504221	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA
diff_RLAGL_Vector_cond1_1567	chr11	29514889	29515183	+	7.05714	NA	promoter-TSS (NM_001163454)	promoter-TSS (NM_001163454)	-3	NM_001163454	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8648	chr6	128802985	128803316	+	7.05705	NA	Intergenic	Intergenic	-14509	NM_008527	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding
diff_RLAGL_Vector_cond1_238	chr1	68543868	68544082	+	7.05670	NA	intron (NM_010154, intron 3 of 26)	intron (NM_010154, intron 3 of 26)	564084	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
diff_RLAGL_Vector_cond1_4483	chr17	53478789	53479790	+	7.05646	NA	promoter-TSS (NM_025887)	promoter-TSS (NM_025887)	55	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_4077	chr16	63856989	63857430	+	7.05502	NA	intron (NM_010140, intron 1 of 16)	CpG	6948	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
diff_RLAGL_Vector_cond1_1969	chr11	116237816	116238405	+	7.05382	NA	promoter-TSS (NM_025276)	promoter-TSS (NM_025276)	-19	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding
diff_RLAGL_Vector_cond1_2829	chr13	77878614	77878825	+	7.05281	NA	intron (NM_001163419, intron 5 of 9)	intron (NM_001163419, intron 5 of 9)	-146183	NM_029315	75507	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_7555	chr5	17571643	17571951	+	7.05251	NA	Intergenic	Intergenic	-3019	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding
diff_RLAGL_Vector_cond1_5659	chr2	102901438	102901822	+	7.05147	NA	promoter-TSS (NM_001177786)	promoter-TSS (NM_001177786)	35	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding
diff_RLAGL_Vector_cond1_8230	chr6	24955311	24955722	+	7.05144	NA	exon (NM_177013, exon 1 of 1)	exon (NM_177013, exon 1 of 1)	609	NM_177013	319832	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding
diff_RLAGL_Vector_cond1_7844	chr5	97061580	97061836	+	7.05104	NA	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49888	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding
diff_RLAGL_Vector_cond1_10026	chr9	37552619	37552978	+	7.04984	NA	promoter-TSS (NM_022029)	promoter-TSS (NM_022029)	-53	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding
diff_RLAGL_Vector_cond1_8421	chr6	82047988	82048264	+	7.04843	NA	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	6498	NM_145570	232146	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_2821	chr13	75707021	75707599	+	7.04781	NA	promoter-TSS (NM_138953)	promoter-TSS (NM_138953)	-174	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding
diff_RLAGL_Vector_cond1_6278	chr3	50302893	50303160	+	7.04723	NA	Intergenic	Intergenic	140587	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
diff_RLAGL_Vector_cond1_3556	chr15	44427343	44428520	+	7.04425	NA	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-180	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5196	chr19	50678513	50678986	+	7.04350	NA	promoter-TSS (NM_021377)	promoter-TSS (NM_021377)	-103	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding
diff_RLAGL_Vector_cond1_1436	chr10	128194590	128194811	+	7.04130	NA	promoter-TSS (NM_001285777)	promoter-TSS (NM_001285777)	65	NM_001285779	216456	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding
diff_RLAGL_Vector_cond1_4246	chr17	8506114	8506360	+	7.04069	NA	Intergenic	Intergenic	-20564	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding
diff_RLAGL_Vector_cond1_2072	chr12	11178848	11179089	+	7.03536	NA	Intergenic	Intergenic	25534	NR_131085	77442	Mm.159922	NR_131083		9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA
diff_RLAGL_Vector_cond1_6532	chr3	109307471	109307756	+	7.03451	NA	Intergenic	Intergenic	-33070	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding
diff_RLAGL_Vector_cond1_6437	chr3	87982865	87983101	+	7.03440	NA	Intergenic	Intergenic	11890	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding
diff_RLAGL_Vector_cond1_2996	chr14	10453306	10453669	+	7.03417	NA	promoter-TSS (NM_001308286)	promoter-TSS (NM_001308286)	-29	NM_001308286	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding
diff_RLAGL_Vector_cond1_3972	chr16	42276925	42277166	+	7.03402	NA	intron (NM_008083, intron 2 of 2)	intron (NM_008083, intron 2 of 2)	26424	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
diff_RLAGL_Vector_cond1_5050	chr19	4615693	4615972	+	7.03290	NA	promoter-TSS (NM_153388)	promoter-TSS (NM_153388)	-165	NM_153388	225875	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_103	chr1	25507329	25507655	+	7.03172	NA	intron (NM_175642, intron 7 of 30)	intron (NM_175642, intron 7 of 30)	-229538	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
diff_RLAGL_Vector_cond1_9245	chr7	128534905	128535383	+	7.03111	NA	intron (NM_013863, intron 1 of 3)	intron (NM_013863, intron 1 of 3)	11561	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding
diff_RLAGL_Vector_cond1_386	chr1	98095201	98095819	+	7.03103	NA	5' UTR (NM_013626, exon 1 of 26)	5' UTR (NM_013626, exon 1 of 26)	122	NM_013626	18484	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
diff_RLAGL_Vector_cond1_8330	chr6	54473269	54473679	+	7.03024	NA	intron (NM_001167860, intron 1 of 7)	intron (NM_001167860, intron 1 of 7)	20591	NM_001167861	330319	Mm.434326	NM_001167860	ENSMUSG00000086040	Wipf3	9030621G03|BQ952480	WAS/WASL interacting protein family, member 3	protein-coding
diff_RLAGL_Vector_cond1_10008	chr9	35421095	35421676	+	7.02985	NA	Intergenic	CpG	-30691	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding
diff_RLAGL_Vector_cond1_6880	chr4	23631348	23631556	+	7.02910	NA	Intergenic	Intergenic	-865010	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
diff_RLAGL_Vector_cond1_810	chr1	192269919	192270195	+	7.02776	NA	intron (NM_010600, intron 5 of 10)	L1MD1|LINE|L1	79280	NM_001038607	16510	Mm.4489	NM_010600	ENSMUSG00000058248	Kcnh1	EAG1|Kv10.1|M-eag	potassium voltage-gated channel, subfamily H (eag-related), member 1	protein-coding
diff_RLAGL_Vector_cond1_7616	chr5	32381026	32381292	+	7.02542	NA	Intergenic	MER5A|DNA|hAT-Charlie	27579	NM_172147	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding
diff_RLAGL_Vector_cond1_7040	chr4	71034655	71034965	+	7.02533	NA	Intergenic	RLTR25B|LTR|ERVK	-499882	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
diff_RLAGL_Vector_cond1_2038	chr12	4907512	4907892	+	7.02465	NA	promoter-TSS (NM_145441)	promoter-TSS (NM_145441)	-182	NM_145441	217379	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding
diff_RLAGL_Vector_cond1_5530	chr2	66204267	66204609	+	7.02459	NA	intron (NM_001290669, intron 22 of 27)	intron (NM_001290669, intron 22 of 27)	52179	NM_001290669	73668	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding
diff_RLAGL_Vector_cond1_1205	chr10	84917147	84917389	+	7.02283	NA	promoter-TSS (NM_001013441)	promoter-TSS (NM_001013441)	-345	NM_001013441	237422	Mm.18936	NM_183172		Ric8b	BC051080|Ric-8|Ric-8b	resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_6623	chr3	132949511	132950069	+	7.02079	NA	promoter-TSS (NM_001287103)	promoter-TSS (NM_001287103)	24	NM_001287103	114249	Mm.279310	NM_033525	ENSMUSG00000040998	Npnt	1110009H02Rik|AA682063|AI314031|Nctn|POEM	nephronectin	protein-coding
diff_RLAGL_Vector_cond1_9638	chr8	77517880	77518187	+	7.01732	NA	promoter-TSS (NM_030113)	promoter-TSS (NM_030113)	-126	NM_030113	78514	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding
diff_RLAGL_Vector_cond1_5006	chr18	82474763	82475011	+	7.01730	NA	promoter-TSS (NM_001025245)	promoter-TSS (NM_001025245)	-236	NM_001025245	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|mld|shi	myelin basic protein	protein-coding
diff_RLAGL_Vector_cond1_6064	chr2	171852445	171852984	+	7.01648	NA	Intergenic	Intergenic	110085	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA
diff_RLAGL_Vector_cond1_1737	chr11	72607087	72607341	+	7.01498	NA	promoter-TSS (NM_025985)	promoter-TSS (NM_025985)	-47	NM_025985	67128	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding
diff_RLAGL_Vector_cond1_5364	chr2	26595167	26595554	+	7.01425	NA	intron (NM_026212, intron 4 of 5)	intron (NM_026212, intron 4 of 5)	-3940	NR_106155	102465787		NR_106155	ENSMUSG00000105799	Mir126b	mmu-mir-126b	microRNA 126b	ncRNA
diff_RLAGL_Vector_cond1_3857	chr16	10657028	10657298	+	7.01296	NA	intron (NM_001204229, intron 18 of 22)	intron (NM_001204229, intron 18 of 22)	111824	NM_001204229	74374	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding
diff_RLAGL_Vector_cond1_8577	chr6	116286807	116287151	+	7.01292	NA	intron (NM_001309446, intron 4 of 9)	intron (NM_001309446, intron 4 of 9)	20447	NM_001290339	67492	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding
diff_RLAGL_Vector_cond1_3632	chr15	61905268	61905849	+	7.01193	NA	Intergenic	Intergenic	-79783	NM_001177354	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding
diff_RLAGL_Vector_cond1_2847	chr13	85189200	85189833	+	7.01130	NA	promoter-TSS (NM_023243)	promoter-TSS (NM_023243)	39	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
diff_RLAGL_Vector_cond1_10048	chr9	44320296	44320506	+	7.00954	NA	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	-119	NM_027909	71764	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding
diff_RLAGL_Vector_cond1_3108	chr14	46539672	46540219	+	7.00819	NA	Intergenic	Intergenic	35906	NR_046459	100873094	Mm.318596	NR_046459		Rubie	-	RNA upstream of Bmp4 expressed in inner ear	ncRNA
diff_RLAGL_Vector_cond1_6063	chr2	171792749	171793050	+	7.00743	NA	Intergenic	Intergenic	169900	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA
diff_RLAGL_Vector_cond1_98	chr1	24295925	24296175	+	7.00535	NA	intron (NM_007733, intron 41 of 50)	intron (NM_007733, intron 41 of 50)	100847	NM_001290691	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_7406	chr4	142212525	142212766	+	7.00514	NA	intron (NM_001109685, intron 1 of 7)	intron (NM_001109685, intron 1 of 7)	-2437	NM_001109684	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding
diff_RLAGL_Vector_cond1_6788	chr4	3780864	3781136	+	7.00414	NA	exon (NM_001111096, exon 11 of 13)	exon (NM_001111096, exon 11 of 13)	54600	NM_026147	67427	Mm.21938	NM_026147		Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding
diff_RLAGL_Vector_cond1_4897	chr18	57698127	57698849	+	7.00234	NA	intron (NM_029290, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-59903	NR_045360	70157	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA
diff_RLAGL_Vector_cond1_4607	chr17	76624809	76625082	+	7.00186	NA	Intergenic	MLTR13|LTR|ERVK	763922	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
diff_RLAGL_Vector_cond1_2437	chr12	108792839	108793148	+	7.00021	NA	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-318	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding
diff_RLAGL_Vector_cond1_934	chr10	25928059	25928368	+	6.99813	NA	Intergenic	Intergenic	-33708	NR_030449	751520		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA
diff_RLAGL_Vector_cond1_2698	chr13	57061028	57061599	+	6.99488	NA	Intergenic	Intergenic	-165524	NM_001302372	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding
diff_RLAGL_Vector_cond1_8380	chr6	65672794	65673064	+	6.99399	NA	intron (NM_172399, intron 1 of 3)	CpG	1318	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding
diff_RLAGL_Vector_cond1_8728	chr6	141590045	141590381	+	6.99291	NA	Intergenic	Intergenic	-39305	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding
diff_RLAGL_Vector_cond1_5881	chr2	144441353	144441622	+	6.99231	NA	Intergenic	Intergenic	-17793	NR_033459	668917	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	OTTMUSG00000003825|Zfp133	zinc finger protein 133, pseudogene	pseudo
diff_RLAGL_Vector_cond1_124	chr1	34120571	34120875	+	6.99176	NA	intron (NM_001276764, intron 8 of 102)	intron (NM_001276764, intron 8 of 102)	3364	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA
diff_RLAGL_Vector_cond1_7963	chr5	119670675	119670927	+	6.99108	NA	promoter-TSS (NM_198052)	promoter-TSS (NM_198052)	-61	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding
diff_RLAGL_Vector_cond1_3691	chr15	74672412	74672732	+	6.99101	NA	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-2	NM_001276684	11838	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding
diff_RLAGL_Vector_cond1_3704	chr15	76457389	76457685	+	6.99094	NA	promoter-TSS (NM_198885)	promoter-TSS (NM_198885)	99	NM_198885	20289	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding
diff_RLAGL_Vector_cond1_7607	chr5	30769047	30769309	+	6.98955	NA	intron (NM_023047, intron 2 of 12)	intron (NM_023047, intron 2 of 12)	-45463	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding
diff_RLAGL_Vector_cond1_9635	chr8	76901988	76902404	+	6.98946	NA	promoter-TSS (NM_001083906)	promoter-TSS (NM_001083906)	-312	NM_001083906	110784	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding
diff_RLAGL_Vector_cond1_4704	chr17	93762445	93762865	+	6.98753	NA	Intergenic	Intergenic	563487	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_2433	chr12	108392489	108392924	+	6.98581	NA	intron (NM_001286346, intron 1 of 21)	intron (NM_001286346, intron 1 of 21)	-17927	NM_001286347	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding
diff_RLAGL_Vector_cond1_3335	chr14	105793384	105793643	+	6.98510	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	103306	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3388	chr14	121878380	121878602	+	6.98494	NA	promoter-TSS (NR_131002)	promoter-TSS (NR_131002)	-115	NM_026861	68889	Mm.441151	NM_026861	ENSMUSG00000041765	Ubac2	1190008A14Rik|AW554959|Phgdhl1	ubiquitin associated domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_1184	chr10	81571618	81571873	+	6.98477	NA	Intergenic	Intergenic	-3542	NM_019725	21886	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2, homolog of Drosophila E(spl)	protein-coding
diff_RLAGL_Vector_cond1_9051	chr7	72306417	72306903	+	6.98471	NA	promoter-TSS (NM_001024703)	promoter-TSS (NM_001024703)	-65	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding
diff_RLAGL_Vector_cond1_2240	chr12	53252525	53252925	+	6.98274	NA	intron (NM_013780, intron 1 of 11)	CpG	4048	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding
diff_RLAGL_Vector_cond1_1701	chr11	63253231	63253439	+	6.98253	NA	intron (NR_105772, intron 5 of 6)	intron (NR_105772, intron 5 of 6)	120532	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding
diff_RLAGL_Vector_cond1_3861	chr16	10838476	10838855	+	6.98225	NA	intron (NM_001162932, intron 1 of 1)	intron (NM_001162932, intron 1 of 1)	3606	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_9232	chr7	126636772	126636984	+	6.98193	NA	Intergenic	B4|SINE|B4	-11408	NM_019738	56312	Mm.18742	NM_019738		Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding
diff_RLAGL_Vector_cond1_491	chr1	133415171	133415437	+	6.98122	NA	intron (NM_011439, intron 1 of 13)	intron (NM_011439, intron 1 of 13)	8908	NM_011439	20668	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding
diff_RLAGL_Vector_cond1_4005	chr16	49698942	49699331	+	6.98110	NA	promoter-TSS (NM_028680)	promoter-TSS (NM_028680)	-158	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding
diff_RLAGL_Vector_cond1_8953	chr7	44748774	44749037	+	6.97971	NA	promoter-TSS (NM_001289839)	promoter-TSS (NM_001289839)	276	NM_133945	101568	Mm.28816	NM_133945	ENSMUSG00000002205	Vrk3	AI428238	vaccinia related kinase 3	protein-coding
diff_RLAGL_Vector_cond1_3994	chr16	45810202	45810558	+	6.97941	NA	intron (NM_153412, intron 2 of 17)	intron (NM_153412, intron 2 of 17)	33998	NM_153412	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology-like domain, family B, member 2	protein-coding
diff_RLAGL_Vector_cond1_3193	chr14	68325134	68325458	+	6.97839	NA	Intergenic	Intergenic	-200292	NM_008691	18040	Mm.242832	NM_008691	ENSMUSG00000022054	Nefm	NF-M|NF160|NF165|Nef3|Nfm	neurofilament, medium polypeptide	protein-coding
diff_RLAGL_Vector_cond1_3938	chr16	33595487	33595839	+	6.97741	NA	intron (NM_134251, intron 5 of 12)	ID4_|SINE|ID	77068	NM_001083902	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding
diff_RLAGL_Vector_cond1_1157	chr10	79943561	79943869	+	6.97687	NA	intron (NM_001288625, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	16374	NM_001288625	13496	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding
diff_RLAGL_Vector_cond1_7753	chr5	64811615	64811832	+	6.97669	NA	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8200	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding
diff_RLAGL_Vector_cond1_8992	chr7	55842144	55842345	+	6.97572	NA	5' UTR (NM_011370, exon 1 of 31)	5' UTR (NM_011370, exon 1 of 31)	173	NM_011370	20430	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_995	chr10	37140930	37141461	+	6.97352	NA	Intergenic	Intergenic	-2269	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
diff_RLAGL_Vector_cond1_5810	chr2	134989725	134990048	+	6.97346	NA	intron (NM_019677, intron 3 of 32)	intron (NM_019677, intron 3 of 32)	203722	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding
diff_RLAGL_Vector_cond1_10187	chr9	83576383	83576651	+	6.97162	NA	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	28179	NM_172507	212531	Mm.491246	NM_172507		Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding
diff_RLAGL_Vector_cond1_9450	chr8	31187028	31187487	+	6.97145	NA	promoter-TSS (NM_001286424)	promoter-TSS (NM_001286424)	-74	NM_134161	171167	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding
diff_RLAGL_Vector_cond1_2560	chr13	13749615	13749893	+	6.97142	NA	intron (NM_010748, intron 45 of 52)	RLTR22_Mur|LTR|ERVK	-34305	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
diff_RLAGL_Vector_cond1_7070	chr4	76941578	76942236	+	6.97120	NA	intron (NM_011211, intron 8 of 39)	intron (NM_011211, intron 8 of 39)	1269988	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
diff_RLAGL_Vector_cond1_6372	chr3	67972651	67973007	+	6.97081	NA	intron (NM_001113419, intron 1 of 10)	intron (NM_001113419, intron 1 of 10)	80609	NM_177585	208426	Mm.246568	NM_177585	ENSMUSG00000051777	Iqcj	D230050A05|EG208426	IQ motif containing J	protein-coding
diff_RLAGL_Vector_cond1_8709	chr6	138346712	138346948	+	6.97072	NA	Intergenic	Intergenic	-76275	NR_126073	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA
diff_RLAGL_Vector_cond1_10144	chr9	69457839	69458195	+	6.97011	NA	TTS (NR_037296)	TTS (NR_037296)	1073	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA
diff_RLAGL_Vector_cond1_2096	chr12	15319698	15320018	+	6.96987	NA	Intergenic	RMER13A1|LTR|ERVK	-269469	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
diff_RLAGL_Vector_cond1_8003	chr5	131838163	131838425	+	6.96911	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	-41975	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
diff_RLAGL_Vector_cond1_485	chr1	132085496	132085857	+	6.96819	NA	Intergenic	Intergenic	-17614	NM_172510	213006	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4	A230072B04|A930031D07Rik|AI850289	major facilitator superfamily domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_7330	chr4	133584240	133584467	+	6.96744	NA	promoter-TSS (NM_001290742)	promoter-TSS (NM_001290742)	-20	NM_133884	100210	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding
diff_RLAGL_Vector_cond1_6351	chr3	63183813	63184172	+	6.96725	NA	Intergenic	RMER20B|LTR|ERVK	-111443	NM_001289462	17380	Mm.296022	NM_008604		Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding
diff_RLAGL_Vector_cond1_3919	chr16	28335042	28335364	+	6.96649	NA	intron (NM_183064, intron 3 of 4)	intron (NM_183064, intron 3 of 4)	110872	NM_001276420	14167	Mm.7996	NM_010199		Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding
diff_RLAGL_Vector_cond1_7908	chr5	109866306	109866687	+	6.96580	NA	Intergenic	Intergenic	-32354	NR_027964	667213	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213|ENSMUSG00000072761	zinc finger protein pseudogene	pseudo
diff_RLAGL_Vector_cond1_5115	chr19	23893330	23893549	+	6.96388	NA	exon (NM_177034, exon 2 of 13)	exon (NM_177034, exon 2 of 13)	134563	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding
diff_RLAGL_Vector_cond1_613	chr1	161070738	161070962	+	6.96258	NA	promoter-TSS (NM_172644)	promoter-TSS (NM_172644)	83	NR_131030	70454	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding
diff_RLAGL_Vector_cond1_7335	chr4	133887759	133888180	+	6.96104	NA	promoter-TSS (NM_001285505)	promoter-TSS (NM_001285505)	-172	NM_009097	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_606	chr1	160057365	160057570	+	6.96096	NA	intron (NM_001162896, intron 1 of 2)	intron (NM_001162896, intron 1 of 2)	13087	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding
diff_RLAGL_Vector_cond1_1949	chr11	114446614	114447041	+	6.96093	NA	intron (NR_027643, intron 1 of 2)	intron (NR_027643, intron 1 of 2)	2033	NR_027643	319819	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA
diff_RLAGL_Vector_cond1_2960	chr13	117202784	117203031	+	6.95988	NA	Intergenic	Intergenic	-17666	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding
diff_RLAGL_Vector_cond1_7536	chr5	12383386	12383589	+	6.95940	NA	5' UTR (NM_028882, exon 1 of 18)	5' UTR (NM_028882, exon 1 of 18)	321	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding
diff_RLAGL_Vector_cond1_5319	chr2	19658285	19658748	+	6.95921	NA	promoter-TSS (NR_033642)	promoter-TSS (NR_033642)	454	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1261	chr10	94570802	94571052	+	6.95863	NA	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	-4330	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding
diff_RLAGL_Vector_cond1_3446	chr15	8710109	8710682	+	6.95788	NA	5' UTR (NM_148938, exon 1 of 10)	5' UTR (NM_148938, exon 1 of 10)	412	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding
diff_RLAGL_Vector_cond1_6955	chr4	46774546	46774852	+	6.95782	NA	intron (NM_001081141, intron 7 of 18)	intron (NM_001081141, intron 7 of 18)	-124500	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding
diff_RLAGL_Vector_cond1_7937	chr5	114507475	114507813	+	6.95740	NA	Intergenic	Intergenic	-60607	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding
diff_RLAGL_Vector_cond1_8550	chr6	112490785	112491087	+	6.95581	NA	Intergenic	Intergenic	-1128	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding
diff_RLAGL_Vector_cond1_8533	chr6	107708282	107708567	+	6.95490	NA	Intergenic	Intergenic	178698	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding
diff_RLAGL_Vector_cond1_7275	chr4	124079707	124079920	+	6.95226	NA	Intergenic	Intergenic	162380	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding
diff_RLAGL_Vector_cond1_10551	chrX	134600900	134601294	+	6.95196	NA	promoter-TSS (NM_013463)	promoter-TSS (NM_013463)	-82	NM_001313717	56258	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding
diff_RLAGL_Vector_cond1_87	chr1	22805754	22806299	+	6.94945	NA	promoter-TSS (NM_001012624)	promoter-TSS (NM_001012624)	-302	NM_001012623	116837	Mm.60061	NM_053270		Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding
diff_RLAGL_Vector_cond1_2677	chr13	53130599	53130848	+	6.94945	NA	intron (NM_013846, intron 4 of 8)	intron (NM_013846, intron 4 of 8)	-149684	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding
diff_RLAGL_Vector_cond1_4455	chr17	47739556	47739797	+	6.94910	NA	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	1745	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding
diff_RLAGL_Vector_cond1_4572	chr17	70845588	70845937	+	6.94746	NA	intron (NM_001164074, intron 2 of 2)	intron (NM_001164074, intron 2 of 2)	1015	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_3729	chr15	83037798	83038240	+	6.94688	NA	Intergenic	Intergenic	-4622	NM_001271412	74039	Mm.32584	NM_028728		Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding
diff_RLAGL_Vector_cond1_4228	chr17	3053916	3054275	+	6.94678	NA	Intergenic	Intergenic	30088	NR_003519	328734	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo
diff_RLAGL_Vector_cond1_3979	chr16	43586964	43587329	+	6.94641	NA	intron (NM_019778, intron 7 of 8)	intron (NM_019778, intron 7 of 8)	-53509	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA
diff_RLAGL_Vector_cond1_6481	chr3	98734388	98734688	+	6.94541	NA	Intergenic	RLTR9D|LTR|ERVK	-9995	NM_153193	15493	Mm.482364	NM_153193	ENSMUSG00000063730	Hsd3b2	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2	protein-coding
diff_RLAGL_Vector_cond1_4838	chr18	39380691	39380941	+	6.94502	NA	Intergenic	Intergenic	106429	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding
diff_RLAGL_Vector_cond1_7596	chr5	26283465	26283675	+	6.94400	NA	Intergenic	Intergenic	25808	NM_001281527	664837		NM_001281527		Gm7361	-	predicted gene 7361	protein-coding
diff_RLAGL_Vector_cond1_6319	chr3	56183771	56184001	+	6.94370	NA	promoter-TSS (NM_030595)	promoter-TSS (NM_030595)	-185	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
diff_RLAGL_Vector_cond1_2511	chr13	3744076	3744334	+	6.94353	NA	Intergenic	Intergenic	60113	NM_027416	70405	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding
diff_RLAGL_Vector_cond1_7399	chr4	141559276	141559520	+	6.94188	NA	Intergenic	Intergenic	13236	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA
diff_RLAGL_Vector_cond1_4236	chr17	5058480	5058693	+	6.93996	NA	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	63512	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding
diff_RLAGL_Vector_cond1_23	chr1	7499088	7499376	+	6.93670	NA	Intergenic	RLTR9C|LTR|ERVK	410312	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_10558	chrX	139078620	139078820	+	6.93645	NA	TTS (NM_177920)	TTS (NM_177920)	6516	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding
diff_RLAGL_Vector_cond1_3959	chr16	38295606	38295885	+	6.93628	NA	promoter-TSS (NM_010936)	promoter-TSS (NM_010936)	-921	NM_010936	18171	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding
diff_RLAGL_Vector_cond1_10591	chrX	159255667	159255959	+	6.93562	NA	promoter-TSS (NM_148945)	promoter-TSS (NM_148945)	31	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding
diff_RLAGL_Vector_cond1_4645	chr17	84014427	84014693	+	6.93528	NA	Intergenic	Intergenic	16008	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA
diff_RLAGL_Vector_cond1_1496	chr11	9793307	9793748	+	6.93450	NA	Intergenic	Lx5c|LINE|L1	601585	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
diff_RLAGL_Vector_cond1_9733	chr8	96868120	96869098	+	6.93446	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-322636	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA
diff_RLAGL_Vector_cond1_254	chr1	71557031	71557505	+	6.93408	NA	exon (NM_026195, exon 1 of 16)	exon (NM_026195, exon 1 of 16)	112	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding
diff_RLAGL_Vector_cond1_5359	chr2	26300188	26300722	+	6.93401	NA	Intergenic	Intergenic	-5898	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding
diff_RLAGL_Vector_cond1_9839	chr8	122444448	122444700	+	6.93336	NA	TTS (NR_015497)	TTS (NR_015497)	918	NR_045696	100689703	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA
diff_RLAGL_Vector_cond1_5520	chr2	64097818	64098275	+	6.93213	NA	promoter-TSS (NM_021716)	promoter-TSS (NM_021716)	-8	NM_021716	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding
diff_RLAGL_Vector_cond1_3065	chr14	28885094	28885319	+	6.93185	NA	Intergenic	Intergenic	-133002	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding
diff_RLAGL_Vector_cond1_5495	chr2	59997796	59998021	+	6.93111	NA	intron (NM_001001182, intron 4 of 35)	L1ME1|LINE|L1	-115302	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4078	chr16	63863867	63864097	+	6.93107	NA	exon (NM_010140, exon 1 of 17)	exon (NM_010140, exon 1 of 17)	175	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
diff_RLAGL_Vector_cond1_10502	chrX	99042385	99042642	+	6.93067	NA	promoter-TSS (NM_199018)	promoter-TSS (NM_199018)	-68	NM_199018	236920	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding
diff_RLAGL_Vector_cond1_4925	chr18	65934851	65935109	+	6.93059	NA	3' UTR (NM_013833, exon 3 of 3)	3' UTR (NM_013833, exon 3 of 3)	4109	NM_013833	19434	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding
diff_RLAGL_Vector_cond1_1927	chr11	109587753	109588012	+	6.92837	NA	intron (NM_145940, intron 4 of 12)	intron (NM_145940, intron 4 of 12)	23507	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding
diff_RLAGL_Vector_cond1_4833	chr18	38993031	38993320	+	6.92818	NA	promoter-TSS (NM_175164)	promoter-TSS (NM_175164)	30	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding
diff_RLAGL_Vector_cond1_2731	chr13	62466750	62467228	+	6.92817	NA	promoter-TSS (NM_178875)	promoter-TSS (NM_178875)	-177	NM_178875	71508	Mm.442497	NM_178875		Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding
diff_RLAGL_Vector_cond1_9871	chr8	128991408	128991791	+	6.92627	NA	intron (NM_029061, intron 10 of 13)	intron (NM_029061, intron 10 of 13)	73893	NM_029061	74703	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding
diff_RLAGL_Vector_cond1_1435	chr10	128176515	128176764	+	6.92507	NA	promoter-TSS (NM_019711)	promoter-TSS (NM_019711)	-71	NM_019711	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_8546	chr6	109209725	109209962	+	6.92415	NA	Intergenic	Intergenic	381202	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
diff_RLAGL_Vector_cond1_4180	chr16	88700260	88700499	+	6.92322	NA	Intergenic	Intergenic	7583	NM_027155	69661	Mm.58243	NM_027155	ENSMUSG00000050704	2310061N02Rik	-	RIKEN cDNA 2310061N02 gene	protein-coding
diff_RLAGL_Vector_cond1_4803	chr18	33377995	33378209	+	6.92317	NA	Intergenic	Intergenic	85532	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
diff_RLAGL_Vector_cond1_2591	chr13	23574161	23574376	+	6.92235	NA	promoter-TSS (NM_178195)	promoter-TSS (NM_178195)	-78	NM_178195	319180		NM_178195	ENSMUSG00000069268	Hist1h2bf	-	histone cluster 1, H2bf	protein-coding
diff_RLAGL_Vector_cond1_4474	chr17	50292752	50293108	+	6.92224	NA	intron (NM_001277863, intron 1 of 9)	CpG	690	NM_001277863	13164	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding
diff_RLAGL_Vector_cond1_3032	chr14	20082773	20083195	+	6.92122	NA	exon (NM_026209, exon 1 of 2)	exon (NM_026209, exon 1 of 2)	188	NM_026209	67509	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_5305	chr2	15538700	15538970	+	6.92039	NA	intron (NM_001310455, intron 1 of 38)	intron (NM_001310455, intron 1 of 38)	12356	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2483	chr12	117545237	117545466	+	6.91963	NA	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	28872	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
diff_RLAGL_Vector_cond1_9120	chr7	90426331	90426616	+	6.91953	NA	5' UTR (NM_027298, exon 1 of 1)	5' UTR (NM_027298, exon 1 of 1)	161	NM_027298	70054	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding
diff_RLAGL_Vector_cond1_205	chr1	60652762	60653021	+	6.91908	NA	Intergenic	Intergenic	-86126	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
diff_RLAGL_Vector_cond1_729	chr1	179803831	179804033	+	6.91862	NA	promoter-TSS (NM_026375)	promoter-TSS (NM_026375)	83	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_2812	chr13	73626765	73627278	+	6.91859	NA	promoter-TSS (NM_009354)	promoter-TSS (NM_009354)	20	NM_009354	21752	Mm.10109	NM_009354	ENSMUSG00000021611	Tert	EST2|TCS1|TP2|TR|TRT	telomerase reverse transcriptase	protein-coding
diff_RLAGL_Vector_cond1_8941	chr7	43313006	43313534	+	6.91653	NA	promoter-TSS (NM_027264)	promoter-TSS (NM_027264)	-9	NM_027264	69930	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding
diff_RLAGL_Vector_cond1_3915	chr16	26590971	26591465	+	6.91591	NA	intron (NM_134103, intron 1 of 7)	intron (NM_134103, intron 1 of 7)	9513	NM_008364	16180	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding
diff_RLAGL_Vector_cond1_7601	chr5	29200016	29200217	+	6.91501	NA	intron (NR_110371, intron 4 of 7)	Tigger7|DNA|TcMar-Tigger	4123	NR_110371	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding
diff_RLAGL_Vector_cond1_5898	chr2	147321096	147321303	+	6.91454	NA	intron (NR_030769, intron 5 of 5)	intron (NR_030769, intron 5 of 5)	41594	NR_040330	99041	Mm.373081	NR_040330		AI646519	Aspax1|OTTMUSG00000015701	expressed sequence AI646519	ncRNA
diff_RLAGL_Vector_cond1_7228	chr4	114821719	114822054	+	6.91125	NA	non-coding (NR_033617, exon 1 of 4)	non-coding (NR_033617, exon 1 of 4)	166	NR_033617	433746	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	OTTMUSG00000008584	predicted gene 12830	ncRNA
diff_RLAGL_Vector_cond1_6446	chr3	89430173	89430463	+	6.91098	NA	promoter-TSS (NM_026869)	promoter-TSS (NM_026869)	104	NM_001293768	68911	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding
diff_RLAGL_Vector_cond1_8264	chr6	36906060	36906326	+	6.91022	NA	intron (NM_001081206, intron 28 of 33)	intron (NM_001081206, intron 28 of 33)	-94832	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
diff_RLAGL_Vector_cond1_8398	chr6	71658399	71658657	+	6.90956	NA	Intergenic	Intergenic	-25611	NM_001038695	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding
diff_RLAGL_Vector_cond1_4770	chr18	20457191	20457421	+	6.90877	NA	intron (NM_181564, intron 9 of 15)	intron (NM_181564, intron 9 of 15)	21131	NM_181564	16769	Mm.358619	NM_181564	ENSMUSG00000001804	Dsg4	CDHF13|lah	desmoglein 4	protein-coding
diff_RLAGL_Vector_cond1_3831	chr15	102204055	102204353	+	6.90872	NA	promoter-TSS (NM_001289695)	promoter-TSS (NM_001289695)	-367	NM_001289695	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding
diff_RLAGL_Vector_cond1_6885	chr4	24966350	24966663	+	6.90859	NA	Intergenic	CpG	-6913	NM_030733	81006	Mm.160412	NM_030733	ENSMUSG00000040372	Gpr63	PSP24beta|Psp24-2	G protein-coupled receptor 63	protein-coding
diff_RLAGL_Vector_cond1_6860	chr4	19575046	19575248	+	6.90841	NA	promoter-TSS (NM_025476)	promoter-TSS (NM_025476)	81	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding
diff_RLAGL_Vector_cond1_2656	chr13	44126140	44126480	+	6.90705	NA	Intergenic	Intergenic	5143	NR_045285	328235	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA
diff_RLAGL_Vector_cond1_5465	chr2	52742115	52742425	+	6.90682	NA	promoter-TSS (NM_019667)	promoter-TSS (NM_019667)	-121	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding
diff_RLAGL_Vector_cond1_650	chr1	167394022	167394467	+	6.90591	NA	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	-447	NM_025569	66447	Mm.218286	NM_025569		Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding
diff_RLAGL_Vector_cond1_2518	chr13	4279282	4279589	+	6.90556	NA	promoter-TSS (NM_013777)	promoter-TSS (NM_013777)	-36	NM_013777	622402	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding
diff_RLAGL_Vector_cond1_5210	chr19	53754592	53754835	+	6.90518	NA	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	77407	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding
diff_RLAGL_Vector_cond1_654	chr1	168288809	168289413	+	6.90342	NA	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	143058	NM_008783	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_8254	chr6	33376956	33377185	+	6.90281	NA	intron (NM_009148, intron 7 of 17)	intron (NM_009148, intron 7 of 17)	127920	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
diff_RLAGL_Vector_cond1_6589	chr3	127161974	127162507	+	6.90202	NA	intron (NR_105029, intron 2 of 3)	intron (NR_105029, intron 2 of 3)	935	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA
diff_RLAGL_Vector_cond1_3581	chr15	51834163	51834429	+	6.89999	NA	intron (NM_080635, intron 2 of 7)	intron (NM_080635, intron 2 of 7)	31165	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
diff_RLAGL_Vector_cond1_1757	chr11	75976894	75977098	+	6.89973	NA	Intergenic	Intergenic	-22916	NM_198637	74230	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding
diff_RLAGL_Vector_cond1_7836	chr5	92925099	92925330	+	6.89944	NA	intron (NM_001077596, intron 2 of 9)	intron (NM_001077596, intron 2 of 9)	27221	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding
diff_RLAGL_Vector_cond1_9356	chr8	6688575	6688912	+	6.89944	NA	Intergenic	Intergenic	-1583511	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
diff_RLAGL_Vector_cond1_7816	chr5	86172814	86173039	+	6.89854	NA	promoter-TSS (NM_172712)	promoter-TSS (NM_172712)	-183	NM_172712	231380	Mm.34012	NM_172712		Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding
diff_RLAGL_Vector_cond1_6200	chr3	20733755	20734022	+	6.89829	NA	Intergenic	Intergenic	-366711	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
diff_RLAGL_Vector_cond1_5141	chr19	32362489	32362811	+	6.89774	NA	intron (NM_144792, intron 1 of 9)	URR1B|DNA|hAT-Charlie	-13334	NM_001168525	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding
diff_RLAGL_Vector_cond1_3019	chr14	16447700	16448079	+	6.89773	NA	intron (NM_001289760, intron 5 of 9)	intron (NM_001289760, intron 5 of 9)	82683	NM_009409	21974	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding
diff_RLAGL_Vector_cond1_2068	chr12	10390620	10391076	+	6.89670	NA	promoter-TSS (NM_023697)	promoter-TSS (NM_023697)	68	NM_023697	105014	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding
diff_RLAGL_Vector_cond1_2782	chr13	67814055	67814343	+	6.89634	NA	intron (NM_198322, intron 1 of 3)	intron (NM_198322, intron 1 of 3)	383	NM_198322	212569	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding
diff_RLAGL_Vector_cond1_4366	chr17	31855574	31856304	+	6.89627	NA	promoter-TSS (NM_010831)	promoter-TSS (NM_010831)	-147	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding
diff_RLAGL_Vector_cond1_2535	chr13	8276115	8276405	+	6.89609	NA	intron (NM_001289530, intron 1 of 9)	intron (NM_001289530, intron 1 of 9)	73394	NR_110345	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
diff_RLAGL_Vector_cond1_7015	chr4	62686798	62687094	+	6.89504	NA	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	12972	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding
diff_RLAGL_Vector_cond1_3318	chr14	103649986	103650524	+	6.89443	NA	promoter-TSS (NM_198014)	promoter-TSS (NM_198014)	12	NM_198014	105439	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding
diff_RLAGL_Vector_cond1_1850	chr11	96829948	96830192	+	6.89443	NA	promoter-TSS (NM_008686)	promoter-TSS (NM_008686)	-102	NM_008686	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding
diff_RLAGL_Vector_cond1_7137	chr4	96273734	96274188	+	6.89427	NA	Intergenic	L2b|LINE|L2	74719	NM_001004141	100066	Mm.26915	NM_001004141	ENSMUSG00000066097	Cyp2j11	AI314783|Cyp2j11-ps	cytochrome P450, family 2, subfamily j, polypeptide 11	protein-coding
diff_RLAGL_Vector_cond1_7462	chr4	150909620	150909954	+	6.89412	NA	5' UTR (NM_020569, exon 1 of 7)	5' UTR (NM_020569, exon 1 of 7)	134	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding
diff_RLAGL_Vector_cond1_1041	chr10	52690439	52690973	+	6.89326	NA	5' UTR (NM_178675, exon 1 of 8)	5' UTR (NM_178675, exon 1 of 8)	205	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
diff_RLAGL_Vector_cond1_820	chr1	193449101	193449477	+	6.89078	NA	Intergenic	Intergenic	58241	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA
diff_RLAGL_Vector_cond1_6405	chr3	77955996	77956207	+	6.89027	NA	Intergenic	RLTR9D|LTR|ERVK	1188786	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
diff_RLAGL_Vector_cond1_9141	chr7	98656674	98656944	+	6.88954	NA	promoter-TSS (NM_172280)	promoter-TSS (NM_172280)	-240	NM_172280	233545	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding
diff_RLAGL_Vector_cond1_10595	chrX	160138444	160138701	+	6.88793	NA	promoter-TSS (NM_008810)	promoter-TSS (NM_008810)	-142	NM_008810	18597	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding
diff_RLAGL_Vector_cond1_996	chr10	37337348	37337639	+	6.88663	NA	Intergenic	Intergenic	-198567	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
diff_RLAGL_Vector_cond1_10212	chr9	89902778	89903164	+	6.88591	NA	Intergenic	Intergenic	-6804	NM_001039655	19417	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding
diff_RLAGL_Vector_cond1_4071	chr16	62920330	62920710	+	6.88588	NA	intron (NM_011173, intron 12 of 14)	L1MCc|LINE|L1	66213	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
diff_RLAGL_Vector_cond1_5344	chr2	23155786	23156216	+	6.88576	NA	promoter-TSS (NM_013771)	promoter-TSS (NM_013771)	23	NM_025979	67121	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding
diff_RLAGL_Vector_cond1_8199	chr6	18247937	18248322	+	6.88502	NA	intron (NM_021050, intron 11 of 26)	intron (NM_021050, intron 11 of 26)	77442	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding
diff_RLAGL_Vector_cond1_8196	chr6	17811563	17811853	+	6.88482	NA	intron (NM_022332, intron 1 of 15)	RLTR40|LTR|ERVK	62538	NM_022332	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
diff_RLAGL_Vector_cond1_4754	chr18	15281709	15281929	+	6.88277	NA	Intergenic	Intergenic	121197	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding
diff_RLAGL_Vector_cond1_2694	chr13	56522326	56522786	+	6.88199	NA	promoter-TSS (NM_178674)	promoter-TSS (NM_178674)	48	NM_178674	213311	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding
diff_RLAGL_Vector_cond1_10327	chr9	116880521	116880795	+	6.88150	NA	intron (NM_001172122, intron 4 of 13)	intron (NM_001172122, intron 4 of 13)	371825	NM_001172124	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
diff_RLAGL_Vector_cond1_7547	chr5	16469310	16470147	+	6.87908	NA	Intergenic	Intergenic	-83767	NM_001289459	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
diff_RLAGL_Vector_cond1_8731	chr6	141640548	141640881	+	6.87876	NA	intron (NM_020495, intron 3 of 15)	intron (NM_020495, intron 3 of 15)	11196	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding
diff_RLAGL_Vector_cond1_2338	chr12	84450874	84451284	+	6.87842	NA	promoter-TSS (NM_134042)	promoter-TSS (NM_134042)	-55	NM_134042	104776	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding
diff_RLAGL_Vector_cond1_4070	chr16	62852008	62852208	+	6.87772	NA	Intergenic	Intergenic	-2199	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding
diff_RLAGL_Vector_cond1_5836	chr2	137776663	137777228	+	6.87767	NA	Intergenic	L1MC2|LINE|L1	-479639	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4975	chr18	77046989	77047473	+	6.87616	NA	promoter-TSS (NM_027721)	promoter-TSS (NM_027721)	65	NM_027721	71206	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding
diff_RLAGL_Vector_cond1_8160	chr6	8259159	8259376	+	6.87376	NA	promoter-TSS (NM_026632)	promoter-TSS (NM_026632)	-21	NM_001302353	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9074	chr7	75455309	75455698	+	6.87243	NA	promoter-TSS (NM_029332)	promoter-TSS (NM_029332)	-31	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding
diff_RLAGL_Vector_cond1_951	chr10	29313087	29313403	+	6.87108	NA	promoter-TSS (NM_001110195)	promoter-TSS (NM_001110195)	79	NM_001110195	52665	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9726	chr8	95434711	95435091	+	6.87103	NA	promoter-TSS (NM_008187)	promoter-TSS (NM_008187)	-32	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding
diff_RLAGL_Vector_cond1_7787	chr5	74195003	74195242	+	6.87045	NA	promoter-TSS (NM_026878)	promoter-TSS (NM_026878)	-204	NM_026878	68939	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding
diff_RLAGL_Vector_cond1_4394	chr17	34959276	34959578	+	6.87018	NA	promoter-TSS (NM_010478)	promoter-TSS (NM_010478)	-189	NM_010478	15511	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding
diff_RLAGL_Vector_cond1_2451	chr12	111813837	111814184	+	6.86958	NA	promoter-TSS (NM_026752)	promoter-TSS (NM_026752)	-131	NM_028875	74335	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding
diff_RLAGL_Vector_cond1_7502	chr5	3198487	3198833	+	6.86809	NA	Intergenic	Intergenic	-145233	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding
diff_RLAGL_Vector_cond1_33	chr1	9153791	9154176	+	6.86797	NA	intron (NM_001290390, intron 2 of 20)	Lx8b|LINE|L1	145894	NM_027671	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_7610	chr5	31697828	31698159	+	6.86727	NA	promoter-TSS (NM_181282)	promoter-TSS (NM_181282)	-57	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding
diff_RLAGL_Vector_cond1_5040	chr18	88980958	88981188	+	6.86605	NA	intron (NM_175542, intron 7 of 48)	intron (NM_175542, intron 7 of 48)	9043	NR_105777	102466633		NR_105777	ENSMUSG00000098676	Mir6359	Gm27328|mmu-mir-6359	microRNA 6359	ncRNA
diff_RLAGL_Vector_cond1_3603	chr15	55645454	55645821	+	6.86582	NA	intron (NM_016667, intron 5 of 6)	intron (NM_016667, intron 5 of 6)	88229	NM_134092	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding
diff_RLAGL_Vector_cond1_6613	chr3	130999914	131000218	+	6.86469	NA	Intergenic	Intergenic	-110231	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding
diff_RLAGL_Vector_cond1_9781	chr8	112936500	112936702	+	6.86398	NA	Intergenic	Intergenic	-130661	NR_033584	791378	Mm.350576	NR_033584		Gm10280	ENSMUSG00000069883	predicted gene 10280	ncRNA
diff_RLAGL_Vector_cond1_4753	chr18	15140286	15140491	+	6.86335	NA	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	11058	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2515	chr13	4131780	4131988	+	6.86227	NA	TTS (NM_134066)	TTS (NM_134066)	18747	NM_134066	105349	Mm.41337	NM_134066	ENSMUSG00000021214	Akr1c18	AW146047	aldo-keto reductase family 1, member C18	protein-coding
diff_RLAGL_Vector_cond1_8892	chr7	29859862	29860097	+	6.86099	NA	promoter-TSS (NM_172740)	promoter-TSS (NM_172740)	0	NM_172740	233058	Mm.297657	NM_172740	ENSMUSG00000058402	Zfp420	B230119D13|B230312I18Rik|mszf59-1|mszf70	zinc finger protein 420	protein-coding
diff_RLAGL_Vector_cond1_5961	chr2	155553120	155553529	+	6.85967	NA	intron (NR_040613, intron 2 of 3)	intron (NR_040613, intron 2 of 3)	3606	NR_040613	74945	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_8076	chr5	141651841	141652131	+	6.85890	NA	intron (NM_177879, intron 4 of 44)	L1MD1|LINE|L1	410452	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick homolog 1 (chicken)	protein-coding
diff_RLAGL_Vector_cond1_116	chr1	32172779	32173240	+	6.85800	NA	intron (NM_133235, intron 1 of 8)	CpG	203	NM_133235	170771	Mm.336594	NM_133235		Khdrbs2	6330586C16Rik|Slim1|Slm1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding
diff_RLAGL_Vector_cond1_4435	chr17	45340721	45341194	+	6.85668	NA	Intergenic	Intergenic	92750	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding
diff_RLAGL_Vector_cond1_7534	chr5	9028196	9028785	+	6.85594	NA	Intergenic	Intergenic	-31344	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding
diff_RLAGL_Vector_cond1_9399	chr8	18846245	18846688	+	6.85514	NA	5' UTR (NM_026792, exon 1 of 8)	5' UTR (NM_026792, exon 1 of 8)	187	NM_026792	52123	Mm.24117	NM_026792		Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding
diff_RLAGL_Vector_cond1_6410	chr3	81017531	81018055	+	6.85486	NA	Intergenic	Intergenic	-18623	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding
diff_RLAGL_Vector_cond1_8859	chr7	24133986	24134187	+	6.85485	NA	promoter-TSS (NM_019941)	promoter-TSS (NM_019941)	-77	NM_019941	56525	Mm.295595	NM_019941		Zfp235	0610030O19Rik|AI428448	zinc finger protein 235	protein-coding
diff_RLAGL_Vector_cond1_5345	chr2	23156383	23156584	+	6.85297	NA	promoter-TSS (NM_013771)	promoter-TSS (NM_013771)	-22	NM_013771	27377	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_3429	chr15	6570209	6570640	+	6.85173	NA	Intergenic	MIR|SINE|MIR	-9423	NM_011815	23880	Mm.170905	NM_011815		Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding
diff_RLAGL_Vector_cond1_6544	chr3	115712868	115713080	+	6.85166	NA	5' UTR (NM_007901, exon 2 of 2)	5' UTR (NM_007901, exon 2 of 2)	2081	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding
diff_RLAGL_Vector_cond1_390	chr1	102626926	102627147	+	6.85139	NA	Intergenic	RLTR22_Mur|LTR|ERVK	1471268	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
diff_RLAGL_Vector_cond1_249	chr1	71337162	71337361	+	6.85135	NA	intron (NM_175210, intron 8 of 52)	intron (NM_175210, intron 8 of 52)	77649	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
diff_RLAGL_Vector_cond1_8055	chr5	138255549	138255874	+	6.85079	NA	5' UTR (NM_001081108, exon 1 of 4)	5' UTR (NM_001081108, exon 1 of 4)	229	NM_001081108	66096	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding
diff_RLAGL_Vector_cond1_3957	chr16	38012949	38013203	+	6.85053	NA	Intergenic	Intergenic	-4247	NR_040565	75175	Mm.399335	NR_040565		4930542C21Rik	-	RIKEN cDNA 4930542C21 gene	ncRNA
diff_RLAGL_Vector_cond1_10329	chr9	117018848	117019120	+	6.85037	NA	intron (NM_001172122, intron 3 of 13)	intron (NM_001172122, intron 3 of 13)	233499	NM_001172124	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
diff_RLAGL_Vector_cond1_5900	chr2	147689596	147690183	+	6.84990	NA	Intergenic	Intergenic	-20804	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA
diff_RLAGL_Vector_cond1_10105	chr9	59680022	59680262	+	6.84985	NA	TTS (NM_011099)	TTS (NM_011099)	23774	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding
diff_RLAGL_Vector_cond1_4991	chr18	79109714	79110197	+	6.84939	NA	promoter-TSS (NM_053099)	promoter-TSS (NM_053099)	-564	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_5902	chr2	147961595	147962055	+	6.84921	NA	Intergenic	Intergenic	83639	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding
diff_RLAGL_Vector_cond1_1714	chr11	68432191	68432548	+	6.84861	NA	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	244	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding
diff_RLAGL_Vector_cond1_10344	chr9	119401866	119402272	+	6.84853	NA	promoter-TSS (NM_007397)	promoter-TSS (NM_007397)	-109	NM_001313757	11481	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding
diff_RLAGL_Vector_cond1_10432	chrX	51204748	51205338	+	6.84840	NA	intron (NM_134163, intron 1 of 7)	CpG	947	NM_134163	171170	Mm.295324	NM_134163		Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6805	chr4	7144270	7144534	+	6.84785	NA	Intergenic	Intergenic	-153679	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
diff_RLAGL_Vector_cond1_7458	chr4	150582083	150582294	+	6.84770	NA	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	69986	NM_173774	242773	Mm.29280	NM_173774		Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding
diff_RLAGL_Vector_cond1_6855	chr4	17667417	17667888	+	6.84659	NA	Intergenic	Lx7|LINE|L1	-185830	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
diff_RLAGL_Vector_cond1_5846	chr2	139677928	139678800	+	6.84500	NA	5' UTR (NM_001276489, exon 1 of 6)	5' UTR (NM_001276489, exon 1 of 6)	186	NM_001276489	319909	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1 homolog (zebrafish)	protein-coding
diff_RLAGL_Vector_cond1_8130	chr6	3396075	3396332	+	6.84423	NA	intron (NM_010156, intron 1 of 1)	RLTR9D|LTR|ERVK	3368	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding
diff_RLAGL_Vector_cond1_5332	chr2	20969479	20969817	+	6.84334	NA	non-coding (NR_033225, exon 2 of 2)	non-coding (NR_033225, exon 2 of 2)	774	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA
diff_RLAGL_Vector_cond1_9555	chr8	56551417	56551619	+	6.84286	NA	promoter-TSS (NM_001009951)	promoter-TSS (NM_001009951)	384	NM_015791	50753	Mm.251174	NM_015791		Fbxo8	Fbx8	F-box protein 8	protein-coding
diff_RLAGL_Vector_cond1_10223	chr9	92444611	92444889	+	6.84258	NA	Intergenic	Intergenic	-12628	NM_178711	235527	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding
diff_RLAGL_Vector_cond1_7191	chr4	107066836	107067057	+	6.84244	NA	promoter-TSS (NM_025500)	promoter-TSS (NM_025500)	-80	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding
diff_RLAGL_Vector_cond1_7041	chr4	71338567	71338794	+	6.84233	NA	Intergenic	Intergenic	-803752	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
diff_RLAGL_Vector_cond1_141	chr1	39749333	39749585	+	6.84181	NA	Intergenic	Intergenic	-28470	NM_001145660	619289	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding
diff_RLAGL_Vector_cond1_6591	chr3	127780018	127780683	+	6.84129	NA	5' UTR (NM_027808, exon 1 of 14)	5' UTR (NM_027808, exon 1 of 14)	177	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding
diff_RLAGL_Vector_cond1_3637	chr15	63194050	63194540	+	6.84111	NA	Intergenic	Intergenic	285313	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA
diff_RLAGL_Vector_cond1_8508	chr6	98726766	98727243	+	6.84080	NA	Intergenic	URR1A|DNA|hAT-Charlie	301294	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
diff_RLAGL_Vector_cond1_5755	chr2	123312275	123312530	+	6.84013	NA	Intergenic	Intergenic	530403	NM_021507	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding
diff_RLAGL_Vector_cond1_10295	chr9	108507694	108508132	+	6.83927	NA	promoter-TSS (NM_133794)	promoter-TSS (NM_133794)	-92	NM_133794	97541	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding
diff_RLAGL_Vector_cond1_5157	chr19	40570818	40571029	+	6.83807	NA	intron (NM_153554, intron 8 of 18)	intron (NM_153554, intron 8 of 18)	17540	NM_153554	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding
diff_RLAGL_Vector_cond1_7216	chr4	112432626	112433028	+	6.83622	NA	intron (NM_177864, intron 1 of 6)	intron (NM_177864, intron 1 of 6)	1158	NM_177864	329918	Mm.246783	NM_177864	ENSMUSG00000049972	Skint9	A030013N09Rik|Skint-9	selection and upkeep of intraepithelial T cells 9	protein-coding
diff_RLAGL_Vector_cond1_10519	chrX	109145878	109146085	+	6.83395	NA	intron (NM_019989, intron 1 of 3)	Lx5c|LINE|L1	50574	NM_019989	56726	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding
diff_RLAGL_Vector_cond1_3808	chr15	99846606	99846813	+	6.83311	NA	intron (NM_001113545, intron 1 of 10)	intron (NM_001113545, intron 1 of 10)	-26560	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding
diff_RLAGL_Vector_cond1_2427	chr12	107754919	107755164	+	6.83269	NA	Intergenic	MTD|LTR|ERVL-MaLR	-19553	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA
diff_RLAGL_Vector_cond1_8482	chr6	91814272	91814478	+	6.83224	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6982	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_4836	chr18	39366255	39366523	+	6.83154	NA	intron (NM_175164, intron 22 of 22)	intron (NM_175164, intron 22 of 22)	120856	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding
diff_RLAGL_Vector_cond1_10209	chr9	88858683	88859101	+	6.83120	NA	promoter-TSS (NR_037983)	promoter-TSS (NR_037983)	-22	NR_037983	319673	Mm.149040	NR_037982	ENSMUSG00000097177	9330159M07Rik	1700096K11Rik|mU50hg-a	RIKEN cDNA 9330159M07 gene	ncRNA
diff_RLAGL_Vector_cond1_6823	chr4	11147763	11148077	+	6.82995	NA	Intergenic	Intergenic	-8521	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding
diff_RLAGL_Vector_cond1_8700	chr6	137471005	137471533	+	6.82995	NA	Intergenic	MIRb|SINE|MIR	48626	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding
diff_RLAGL_Vector_cond1_1385	chr10	121033407	121033656	+	6.82800	NA	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	-473	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding
diff_RLAGL_Vector_cond1_4175	chr16	88599536	88599738	+	6.82757	NA	Intergenic	Intergenic	12642	NM_001163141	239932	Mm.120273	NM_001163141	ENSMUSG00000050239	Krtap24-1	Gm312	keratin associated protein 24-1	protein-coding
diff_RLAGL_Vector_cond1_6012	chr2	164437640	164437932	+	6.82738	NA	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	5402	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding
diff_RLAGL_Vector_cond1_9259	chr7	131411378	131411677	+	6.82711	NA	intron (NM_025826, intron 1 of 10)	intron (NM_025826, intron 1 of 10)	926	NM_025826	66885	Mm.334274	NM_025826	ENSMUSG00000030861	Acadsb	1300003O09Rik|2-MEBCAD|BB066609|SBCAD	acyl-Coenzyme A dehydrogenase, short/branched chain	protein-coding
diff_RLAGL_Vector_cond1_4749	chr18	10936852	10937055	+	6.82703	NA	Intergenic	Intergenic	-115557	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding
diff_RLAGL_Vector_cond1_5453	chr2	49787400	49787776	+	6.82665	NA	promoter-TSS (NM_027990)	promoter-TSS (NM_027990)	-98	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding
diff_RLAGL_Vector_cond1_2572	chr13	18029526	18029773	+	6.82627	NA	Intergenic	RSINE1|SINE|B4	-36298	NM_025904	67008	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3072	chr14	31436137	31436345	+	6.82565	NA	promoter-TSS (NM_011894)	promoter-TSS (NM_011894)	-208	NM_011894	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding
diff_RLAGL_Vector_cond1_6174	chr3	15098204	15098669	+	6.82438	NA	Intergenic	Intergenic	127235	NR_040550	77127	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA
diff_RLAGL_Vector_cond1_2931	chr13	111296050	111296272	+	6.82419	NA	Intergenic	Intergenic	41148	NM_175497	238880	Mm.107293	NM_175497	ENSMUSG00000055194	Actbl2	4732495G21Rik	actin, beta-like 2	protein-coding
diff_RLAGL_Vector_cond1_5269	chr2	9972057	9972256	+	6.82230	NA	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	76453	NM_027748	209361	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	protein-coding
diff_RLAGL_Vector_cond1_2446	chr12	110204534	110204951	+	6.82225	NA	Intergenic	Intergenic	-46669	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA
diff_RLAGL_Vector_cond1_6291	chr3	51916328	51916639	+	6.82098	NA	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	188523	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2269	chr12	59131303	59131544	+	6.82028	NA	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-30	NM_001165253	217615	Mm.244118	NM_146034	ENSMUSG00000021000	Ctage5	D12Bwg0579e|Mea6|Mgea|Mgea6	CTAGE family, member 5	protein-coding
diff_RLAGL_Vector_cond1_9114	chr7	88271432	88271835	+	6.81938	NA	Intergenic	Intergenic	-6452	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding
diff_RLAGL_Vector_cond1_5277	chr2	11777452	11777970	+	6.81860	NA	promoter-TSS (NM_177268)	promoter-TSS (NM_177268)	-42	NM_177268	320816	Mm.260201	NM_177268		Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding
diff_RLAGL_Vector_cond1_3147	chr14	56668081	56668298	+	6.81819	NA	promoter-TSS (NM_023773)	promoter-TSS (NM_023773)	-59	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding
diff_RLAGL_Vector_cond1_3416	chr15	4033532	4034171	+	6.81727	NA	intron (NM_024188, intron 1 of 16)	MLT1A1|LTR|ERVL-MaLR	-6445	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA
diff_RLAGL_Vector_cond1_6345	chr3	62338646	62339037	+	6.81677	NA	promoter-TSS (NM_001081295)	promoter-TSS (NM_001081295)	64	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding
diff_RLAGL_Vector_cond1_8684	chr6	135250335	135250610	+	6.81645	NA	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	-2588	NM_001080552	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell-specific gene 1	protein-coding
diff_RLAGL_Vector_cond1_9652	chr8	79550249	79550480	+	6.81628	NA	Intergenic	Intergenic	-89312	NM_001256033	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_5916	chr2	148835866	148836119	+	6.81496	NA	intron (NM_009979, intron 1 of 2)	RLTR17D_Mm|LTR|ERVK	845	NM_009979	13013	Mm.21005	NM_009979	ENSMUSG00000027445	Cst9	M12|cresp|testatin	cystatin 9	protein-coding
diff_RLAGL_Vector_cond1_7740	chr5	53962187	53962440	+	6.81387	NA	Intergenic	Intergenic	-36210	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding
diff_RLAGL_Vector_cond1_6016	chr2	164785572	164785919	+	6.81362	NA	promoter-TSS (NM_133924)	promoter-TSS (NM_133924)	-276	NM_133924	101113	Mm.295647	NM_133924		Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding
diff_RLAGL_Vector_cond1_1993	chr11	118469720	118469981	+	6.81343	NA	Intergenic	Intergenic	-7110	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding
diff_RLAGL_Vector_cond1_2984	chr14	6287342	6287981	+	6.81284	NA	promoter-TSS (NM_001270812)	promoter-TSS (NM_001270812)	-411	NM_001270812	100861615	Mm.488431	NM_001270812	ENSMUSG00000079396	LOC100861615	-	alpha takusan-like	protein-coding
diff_RLAGL_Vector_cond1_4733	chr18	7868788	7869166	+	6.81276	NA	promoter-TSS (NM_001146298)	promoter-TSS (NM_001146298)	145	NM_001282093	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding
diff_RLAGL_Vector_cond1_2691	chr13	55495283	55495610	+	6.81272	NA	Intergenic	Intergenic	-7370	NM_001177371	56320	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding
diff_RLAGL_Vector_cond1_208	chr1	62699918	62700149	+	6.81179	NA	Intergenic	Intergenic	-3284	NM_001077407	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding
diff_RLAGL_Vector_cond1_3282	chr14	99609903	99610338	+	6.81149	NA	Intergenic	Intergenic	311429	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding
diff_RLAGL_Vector_cond1_8362	chr6	61223452	61223769	+	6.81067	NA	intron (NM_183310, intron 1 of 10)	MTE2a|LTR|ERVL-MaLR	-42800	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
diff_RLAGL_Vector_cond1_5373	chr2	30032337	30032555	+	6.80749	NA	TTS (NM_001177667)	TTS (NM_001177667)	16433	NM_001008498	71820	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding
diff_RLAGL_Vector_cond1_9822	chr8	120284969	120285325	+	6.80711	NA	Intergenic	Intergenic	-56917	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA
diff_RLAGL_Vector_cond1_10343	chr9	119340910	119341584	+	6.80671	NA	promoter-TSS (NM_130864)	promoter-TSS (NM_130864)	-47	NM_130864	113868	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding
diff_RLAGL_Vector_cond1_140	chr1	39340725	39340962	+	6.80593	NA	intron (NM_008719, intron 16 of 20)	intron (NM_008719, intron 16 of 20)	-27008	NM_053257	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	-	ribosomal protein L31	protein-coding
diff_RLAGL_Vector_cond1_1804	chr11	86993731	86994072	+	6.80509	NA	promoter-TSS (NM_001005341)	promoter-TSS (NM_001005341)	-139	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1073	chr10	59267236	59267543	+	6.80258	NA	Intergenic	RLTR24|LTR|ERV1	45467	NM_172939	268301	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding
diff_RLAGL_Vector_cond1_8434	chr6	85239257	85239462	+	6.80232	NA	intron (NM_178639, intron 10 of 13)	intron (NM_178639, intron 10 of 13)	51428	NM_010131	13796	Mm.391473	NM_010131		Emx1	-	empty spiracles homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_1425	chr10	127290544	127290789	+	6.80198	NA	promoter-TSS (NM_007837)	promoter-TSS (NM_007837)	-127	NM_001290183	13198	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding
diff_RLAGL_Vector_cond1_7599	chr5	28500982	28501392	+	6.80150	NA	intron (NR_015562, intron 1 of 6)	intron (NR_015562, intron 1 of 6)	-34086	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding
diff_RLAGL_Vector_cond1_735	chr1	180484091	180484304	+	6.80125	NA	promoter-TSS (NM_001081227)	promoter-TSS (NM_001081227)	-693	NM_001081227	381310	Mm.44791	NM_001081227	ENSMUSG00000053963	6330403A02Rik	ENSMUSG00000056615|Gm10001|R75555	RIKEN cDNA 6330403A02 gene	protein-coding
diff_RLAGL_Vector_cond1_10576	chrX	150812744	150813211	+	6.79951	NA	intron (NM_030700, intron 1 of 12)	CpG	726	NM_001199246	80884	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding
diff_RLAGL_Vector_cond1_9486	chr8	40640698	40640931	+	6.79736	NA	Intergenic	Intergenic	-6022	NM_001040699	54384	Mm.294871	NM_019433		Mtmr7	-	myotubularin related protein 7	protein-coding
diff_RLAGL_Vector_cond1_7163	chr4	101419615	101419843	+	6.79668	NA	promoter-TSS (NM_009647)	promoter-TSS (NM_009647)	26	NM_009647	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding
diff_RLAGL_Vector_cond1_3232	chr14	79259242	79259613	+	6.79496	NA	Intergenic	L1M4|LINE|L1	-12060	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding
diff_RLAGL_Vector_cond1_5850	chr2	140170570	140170975	+	6.79173	NA	promoter-TSS (NM_001081090)	promoter-TSS (NM_001081090)	126	NM_027093	69487	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding
diff_RLAGL_Vector_cond1_8753	chr6	144311798	144312013	+	6.79150	NA	Intergenic	Intergenic	-102337	NM_001243163	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
diff_RLAGL_Vector_cond1_8721	chr6	140995902	140996214	+	6.79150	NA	Intergenic	Intergenic	-253211	NM_018779	54611	Mm.103728	NM_018779		Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding
diff_RLAGL_Vector_cond1_6829	chr4	12241021	12241236	+	6.79037	NA	Intergenic	Intergenic	-69113	NM_001310743	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
diff_RLAGL_Vector_cond1_4434	chr17	45244836	45245197	+	6.78962	NA	Intergenic	Intergenic	188691	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding
diff_RLAGL_Vector_cond1_4867	chr18	47341800	47342448	+	6.78907	NA	intron (NM_018744, intron 1 of 18)	intron (NM_018744, intron 1 of 18)	26744	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding
diff_RLAGL_Vector_cond1_3749	chr15	86446106	86446371	+	6.78804	NA	intron (NM_145476, intron 11 of 12)	intron (NM_145476, intron 11 of 12)	231779	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding
diff_RLAGL_Vector_cond1_1276	chr10	99441054	99441427	+	6.78769	NA	Intergenic	Intergenic	-167931	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA
diff_RLAGL_Vector_cond1_7662	chr5	39733472	39733766	+	6.78759	NA	Intergenic	Intergenic	-88988	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_5657	chr2	102806014	102806259	+	6.78747	NA	Intergenic	Intergenic	95529	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding
diff_RLAGL_Vector_cond1_21	chr1	7206147	7206369	+	6.78739	NA	Intergenic	Intergenic	117338	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2432	chr12	108333746	108334190	+	6.78502	NA	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-413	NM_010010	13116	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_1899	chr11	103132913	103133332	+	6.78242	NA	promoter-TSS (NM_027658)	promoter-TSS (NM_027658)	-217	NM_001130516	71059	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding
diff_RLAGL_Vector_cond1_4533	chr17	63849708	63849933	+	6.78178	NA	Intergenic	CpG	-14161	NM_001037997	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding
diff_RLAGL_Vector_cond1_7503	chr5	3213822	3214053	+	6.78155	NA	Intergenic	Intergenic	-129956	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding
diff_RLAGL_Vector_cond1_4411	chr17	37413473	37413766	+	6.78106	NA	Intergenic	Intergenic	8142	NM_146511	258504	Mm.377541	NM_146511	ENSMUSG00000063188	Olfr107	MOR156-3	olfactory receptor 107	protein-coding
diff_RLAGL_Vector_cond1_1593	chr11	32642597	32642800	+	6.78084	NA	5' UTR (NM_134015, exon 1 of 14)	5' UTR (NM_134015, exon 1 of 14)	143	NM_001271347	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding
diff_RLAGL_Vector_cond1_3389	chr14	121963637	121963899	+	6.78079	NA	intron (NM_183031, intron 1 of 1)	intron (NM_183031, intron 1 of 1)	1425	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding
diff_RLAGL_Vector_cond1_4421	chr17	42658771	42658978	+	6.78032	NA	intron (NM_001289499, intron 9 of 9)	intron (NM_001289499, intron 9 of 9)	33410	NM_030067	78249	Mm.66217	NM_030067	ENSMUSG00000023918	Adgrf4	4632435A09Rik|AV239010|Gpr115	adhesion G protein-coupled receptor F4	protein-coding
diff_RLAGL_Vector_cond1_10254	chr9	101052889	101053137	+	6.77998	NA	Intergenic	Intergenic	-18129	NM_025835	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_4352	chr17	28341025	28341255	+	6.77746	NA	intron (NM_011566, intron 2 of 12)	CpG	9206	NM_001204156	21678	Mm.6655	NM_011566	ENSMUSG00000002249	Tead3	DTEF-1|ETFR-1|TEAD-3|TEF-5|Tcf13r2	TEA domain family member 3	protein-coding
diff_RLAGL_Vector_cond1_4677	chr17	88257054	88257507	+	6.77709	NA	Intergenic	Intergenic	131768	NM_001190356	225058	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding
diff_RLAGL_Vector_cond1_4302	chr17	21488803	21489100	+	6.77674	NA	promoter-TSS (NM_013843)	promoter-TSS (NM_013843)	-37	NM_013843	24132	Mm.42140	NM_013843		Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding
diff_RLAGL_Vector_cond1_5885	chr2	145167775	145167977	+	6.77665	NA	Intergenic	CpG	-74735	NM_053195	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding
diff_RLAGL_Vector_cond1_7344	chr4	134307322	134307866	+	6.77583	NA	Intergenic	Intergenic	-7526	NM_001039048	433766	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding
diff_RLAGL_Vector_cond1_4998	chr18	80169976	80170205	+	6.77465	NA	Intergenic	B3|SINE|B2	-16149	NR_131039	105246506	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA
diff_RLAGL_Vector_cond1_8763	chr6	145340683	145340984	+	6.77325	NA	Intergenic	CpG	-46792	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo
diff_RLAGL_Vector_cond1_2961	chr13	117220996	117221207	+	6.77271	NA	intron (NM_010330, intron 1 of 8)	CpG	528	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding
diff_RLAGL_Vector_cond1_5889	chr2	145597985	145598256	+	6.77196	NA	intron (NM_053195, intron 8 of 16)	intron (NM_053195, intron 8 of 16)	-43138	NM_001037929	627302	Mm.445953	NM_001037929		Gm14092	OTTMUSG00000015643	predicted gene 14092	protein-coding
diff_RLAGL_Vector_cond1_7447	chr4	149307710	149307914	+	6.77070	NA	promoter-TSS (NM_008441)	promoter-TSS (NM_008441)	-79	NM_001290995	16561	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding
diff_RLAGL_Vector_cond1_8462	chr6	89644501	89644754	+	6.77058	NA	intron (NM_001178059, intron 1 of 13)	CpG	639	NM_001178059	232223	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TR2|Tgr	thioredoxin reductase 3	protein-coding
diff_RLAGL_Vector_cond1_7452	chr4	149887065	149887408	+	6.76838	NA	Intergenic	Intergenic	67770	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding
diff_RLAGL_Vector_cond1_9691	chr8	87708164	87708384	+	6.76610	NA	intron (NM_001310520, intron 3 of 5)	intron (NM_001310520, intron 3 of 5)	-66064	NR_131165	73557		NR_131165		1700096P03Rik	-	RIKEN cDNA 1700096P03 gene	ncRNA
diff_RLAGL_Vector_cond1_727	chr1	179686542	179686965	+	6.76501	NA	3' UTR (NM_178653, exon 12 of 12)	3' UTR (NM_178653, exon 12 of 12)	18522	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding
diff_RLAGL_Vector_cond1_3960	chr16	38902110	38902774	+	6.76333	NA	promoter-TSS (NM_170599)	promoter-TSS (NM_170599)	97	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
diff_RLAGL_Vector_cond1_2082	chr12	12788052	12788434	+	6.76280	NA	Intergenic	Intergenic	153593	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	protein-coding
diff_RLAGL_Vector_cond1_8519	chr6	101054847	101055065	+	6.76219	NA	Intergenic	Intergenic	221318	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding
diff_RLAGL_Vector_cond1_1395	chr10	121873227	121873471	+	6.76210	NA	intron (NM_001081037, intron 4 of 21)	intron (NM_001081037, intron 4 of 21)	133412	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding
diff_RLAGL_Vector_cond1_2780	chr13	67683523	67683728	+	6.76209	NA	promoter-TSS (NM_001001187)	promoter-TSS (NM_001001187)	-113	NM_001001187	408068	Mm.435551	NM_175676	ENSMUSG00000048280	Zfp738	3830402I07Rik|6720487G11Rik	zinc finger protein 738	protein-coding
diff_RLAGL_Vector_cond1_7552	chr5	17272171	17272420	+	6.75964	NA	Intergenic	Intergenic	-203827	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding
diff_RLAGL_Vector_cond1_7545	chr5	15959874	15960148	+	6.75799	NA	intron (NM_009784, intron 1 of 37)	intron (NM_009784, intron 1 of 37)	25320	NM_009784	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
diff_RLAGL_Vector_cond1_6918	chr4	34203141	34203499	+	6.75652	NA	Intergenic	RLTR42-int|LTR|ERVK	-153253	NM_026293	67652	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding
diff_RLAGL_Vector_cond1_1345	chr10	114801787	114802074	+	6.75591	NA	promoter-TSS (NM_146241)	promoter-TSS (NM_146241)	-560	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding
diff_RLAGL_Vector_cond1_7231	chr4	115795486	115795706	+	6.75487	NA	intron (NM_181040, intron 5 of 8)	intron (NM_181040, intron 5 of 8)	10782	NM_181040	230649	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding
diff_RLAGL_Vector_cond1_6385	chr3	69892250	69892474	+	6.75295	NA	Intergenic	Intergenic	-32468	NM_133675	66183	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding
diff_RLAGL_Vector_cond1_4487	chr17	53793785	53794073	+	6.75262	NA	Intergenic	RLTR17C_Mm|LTR|ERVK	52029	NM_026935	69083	Mm.19320	NM_026935		Sult1c2	1810008N17Rik|ST1C1|ST1C2|Sult1c1	sulfotransferase family, cytosolic, 1C, member 2	protein-coding
diff_RLAGL_Vector_cond1_7582	chr5	23672238	23672511	+	6.75250	NA	Intergenic	Intergenic	40293	NR_015554	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA
diff_RLAGL_Vector_cond1_3541	chr15	41612292	41612650	+	6.75101	NA	intron (NM_001130166, intron 2 of 16)	MIR3|SINE|MIR	164989	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
diff_RLAGL_Vector_cond1_7391	chr4	141078197	141078544	+	6.75088	NA	promoter-TSS (NM_025383)	promoter-TSS (NM_025383)	-25	NM_025383	66147	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898	NECAP endocytosis associated 2	protein-coding
diff_RLAGL_Vector_cond1_9739	chr8	104077020	104077389	+	6.75071	NA	Intergenic	Intergenic	-24421	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding
diff_RLAGL_Vector_cond1_4162	chr16	87683662	87684034	+	6.75053	NA	Intergenic	Intergenic	-15106	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1	protein-coding
diff_RLAGL_Vector_cond1_10331	chr9	117252526	117252842	+	6.75014	NA	promoter-TSS (NM_001172126)	promoter-TSS (NM_001172126)	-201	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
diff_RLAGL_Vector_cond1_5023	chr18	86352870	86353106	+	6.74964	NA	Intergenic	ERVB5_1-LTR_MM|LTR|ERVK	-41964	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
diff_RLAGL_Vector_cond1_5136	chr19	29527351	29527629	+	6.74931	NA	intron (NM_001081319, intron 1 of 25)	intron (NM_001081319, intron 1 of 25)	5208	NM_001081319	226089	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding
diff_RLAGL_Vector_cond1_7102	chr4	86575549	86575770	+	6.74922	NA	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	-14	NM_178376	68441	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding
diff_RLAGL_Vector_cond1_984	chr10	34282063	34282309	+	6.74861	NA	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-4	NM_009433	22110	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding
diff_RLAGL_Vector_cond1_770	chr1	186497356	186497718	+	6.74652	NA	Intergenic	Intergenic	61144	NR_131124	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA
diff_RLAGL_Vector_cond1_2110	chr12	17773723	17774042	+	6.74640	NA	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	83068	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding
diff_RLAGL_Vector_cond1_7026	chr4	63496017	63496266	+	6.74581	NA	promoter-TSS (NM_028640)	promoter-TSS (NM_028640)	-150	NM_001276371	73750	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|wi	whirlin	protein-coding
diff_RLAGL_Vector_cond1_1887	chr11	101785162	101785540	+	6.74532	NA	promoter-TSS (NM_001316365)	promoter-TSS (NM_001316365)	-41	NM_001316366	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding
diff_RLAGL_Vector_cond1_1566	chr11	29172631	29173078	+	6.74394	NA	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-53	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding
diff_RLAGL_Vector_cond1_6958	chr4	47435994	47436193	+	6.74385	NA	Intergenic	Plat_L3|LINE|CR1	38274	NM_019998	56737	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding
diff_RLAGL_Vector_cond1_6210	chr3	21644978	21645202	+	6.74160	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-431562	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_1468	chr11	6856015	6856215	+	6.74077	NA	Intergenic	Intergenic	-136078	NR_046025	626419	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	OTTMUSG00000005129	predicted gene 11981	ncRNA
diff_RLAGL_Vector_cond1_7526	chr5	7960328	7960580	+	6.74060	NA	promoter-TSS (NM_054098)	promoter-TSS (NM_054098)	-18	NM_054098	117167	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding
diff_RLAGL_Vector_cond1_10528	chrX	115608182	115608391	+	6.74003	NA	Intergenic	Intergenic	681297	NR_130989	78086		NR_130989	ENSMUSG00000085619	4930555B12Rik	-	RIKEN cDNA 4930555B12 gene	ncRNA
diff_RLAGL_Vector_cond1_8090	chr5	145344878	145345288	+	6.73984	NA	promoter-TSS (NM_001100180)	promoter-TSS (NM_001100180)	-187	NM_001100180	622127	Mm.359379	NM_001100180	ENSMUSG00000070419	Cyp3a57	EG622127	cytochrome P450, family 3, subfamily a, polypeptide 57	protein-coding
diff_RLAGL_Vector_cond1_2325	chr12	79623148	79623707	+	6.73682	NA	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	301306	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA
diff_RLAGL_Vector_cond1_5664	chr2	103325342	103325669	+	6.73674	NA	Intergenic	Intergenic	-22309	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding
diff_RLAGL_Vector_cond1_9182	chr7	108934062	108934535	+	6.73628	NA	promoter-TSS (NM_025344)	promoter-TSS (NM_025344)	-117	NM_025344	66085	Mm.182962	NM_025344		Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding
diff_RLAGL_Vector_cond1_7752	chr5	64803114	64803335	+	6.73606	NA	promoter-TSS (NM_008453)	promoter-TSS (NM_008453)	-299	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding
diff_RLAGL_Vector_cond1_3222	chr14	76149947	76150158	+	6.73597	NA	Intergenic	Intergenic	39161	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_10592	chrX	159371788	159372133	+	6.73597	NA	promoter-TSS (NM_025437)	promoter-TSS (NM_025437)	-235	NM_025437	66235	Mm.294623	NM_025437		Eif1ax	1500010B24Rik|AI426898|Eif1ay	eukaryotic translation initiation factor 1A, X-linked	protein-coding
diff_RLAGL_Vector_cond1_8442	chr6	86640950	86641182	+	6.73497	NA	Intergenic	Intergenic	12892	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding
diff_RLAGL_Vector_cond1_952	chr10	29535509	29535874	+	6.73298	NA	5' UTR (NM_028351, exon 1 of 5)	5' UTR (NM_028351, exon 1 of 5)	176	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding
diff_RLAGL_Vector_cond1_6831	chr4	12767227	12767516	+	6.73237	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-139466	NM_173746	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
diff_RLAGL_Vector_cond1_7890	chr5	105439628	105439857	+	6.73121	NA	intron (NM_001033550, intron 1 of 4)	intron (NM_001033550, intron 1 of 4)	23967	NM_001033550	433926	Mm.439781	NM_001033550		Lrrc8b	R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding
diff_RLAGL_Vector_cond1_7405	chr4	142185107	142185424	+	6.73067	NA	intron (NM_144531, intron 1 of 13)	intron (NM_144531, intron 1 of 13)	24943	NM_144531	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding
diff_RLAGL_Vector_cond1_3321	chr14	103906254	103906668	+	6.73055	NA	Intergenic	Intergenic	-61985	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding
diff_RLAGL_Vector_cond1_9810	chr8	117805550	117805802	+	6.73049	NA	Intergenic	Intergenic	-3747	NM_026758	68533	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding
diff_RLAGL_Vector_cond1_4395	chr17	35046676	35046925	+	6.73048	NA	promoter-TSS (NM_013600)	promoter-TSS (NM_013600)	-55	NM_001146215	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_2885	chr13	98112924	98113149	+	6.73042	NA	intron (NM_012026, intron 2 of 35)	intron (NM_012026, intron 2 of 35)	93129	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
diff_RLAGL_Vector_cond1_8718	chr6	140187204	140187580	+	6.72957	NA	Intergenic	Intergenic	145867	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding
diff_RLAGL_Vector_cond1_5150	chr19	38030817	38031024	+	6.72876	NA	intron (NM_001099634, intron 1 of 52)	RLTR26C_MM|LTR|ERVK	12657	NM_001302140	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding
diff_RLAGL_Vector_cond1_7804	chr5	80551800	80552280	+	6.72864	NA	Intergenic	MMERVK10D3_LTR|LTR|ERVK	-469553	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
diff_RLAGL_Vector_cond1_2023	chr11	121387970	121388538	+	6.72783	NA	promoter-TSS (NM_139147)	promoter-TSS (NM_139147)	-3	NM_139147	217371	Mm.281639	NM_139147	ENSMUSG00000025170	Rab40b	SEC4L|rar	Rab40B, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_2687	chr13	54758328	54758733	+	6.72723	NA	TTS (NM_033610)	TTS (NM_033610)	7910	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding
diff_RLAGL_Vector_cond1_4830	chr18	38250045	38250623	+	6.72505	NA	promoter-TSS (NR_015475)	promoter-TSS (NR_015475)	85	NM_024179	66839	Mm.281086	NM_024179	ENSMUSG00000024442	0610009O20Rik	2700004E22Rik|Dele|Kiaa0141	RIKEN cDNA 0610009O20 gene	protein-coding
diff_RLAGL_Vector_cond1_10	chr1	5082869	5083228	+	6.72451	NA	promoter-TSS (NM_133826)	promoter-TSS (NM_133826)	-38	NM_133826	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding
diff_RLAGL_Vector_cond1_1783	chr11	81914205	81914465	+	6.72369	NA	intron (NM_001034013, intron 1 of 9)	RMER15|LTR|ERVL	53658	NR_038010	71388	Mm.158687	NR_038010	ENSMUSG00000020703	5530401A14Rik	-	RIKEN cDNA 5530401A14 gene	ncRNA
diff_RLAGL_Vector_cond1_2845	chr13	84223091	84223329	+	6.72361	NA	intron (NR_029418, intron 1 of 10)	MER92B|LTR|ERV1	914	NR_029418	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding
diff_RLAGL_Vector_cond1_2808	chr13	73268767	73269114	+	6.72342	NA	exon (NM_018885, exon 6 of 6)	exon (NM_018885, exon 6 of 6)	8443	NM_018885	50916	Mm.103784	NM_018885	ENSMUSG00000021604	Irx4	-	Iroquois related homeobox 4 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_10355	chr9	120738011	120738231	+	6.72241	NA	Intergenic	Intergenic	160790	NR_073359	76100	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA
diff_RLAGL_Vector_cond1_8561	chr6	113696778	113697169	+	6.72119	NA	promoter-TSS (NM_001033463)	promoter-TSS (NM_001033463)	-526	NM_001033463	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_160	chr1	43827803	43828175	+	6.72008	NA	promoter-TSS (NM_026430)	promoter-TSS (NM_026430)	-281	NM_026430	67883	Mm.387202	NM_026430		Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding
diff_RLAGL_Vector_cond1_2226	chr12	50648669	50649531	+	6.71813	NA	5' UTR (NM_008858, exon 1 of 19)	5' UTR (NM_008858, exon 1 of 19)	123	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
diff_RLAGL_Vector_cond1_1678	chr11	59662258	59662488	+	6.71756	NA	promoter-TSS (NM_012027)	promoter-TSS (NM_012027)	-122	NM_012027	26936	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding
diff_RLAGL_Vector_cond1_10572	chrX	145505057	145505395	+	6.71726	NA	Intergenic	Intergenic	-17587	NM_001290274	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding
diff_RLAGL_Vector_cond1_6780	chr3	159724638	159724841	+	6.71706	NA	Intergenic	Intergenic	-114956	NR_037590	68151	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|Gpr177	wntless homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9565	chr8	60505891	60506406	+	6.71705	NA	promoter-TSS (NM_011834)	promoter-TSS (NM_011834)	24	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|mKat-2	aminoadipate aminotransferase	protein-coding
diff_RLAGL_Vector_cond1_680	chr1	172706309	172706522	+	6.71701	NA	Intergenic	Intergenic	8359	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding
diff_RLAGL_Vector_cond1_2814	chr13	74009192	74009596	+	6.71608	NA	promoter-TSS (NM_182839)	promoter-TSS (NM_182839)	-25	NM_182839	72948	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding
diff_RLAGL_Vector_cond1_5552	chr2	73312481	73312739	+	6.71597	NA	promoter-TSS (NM_025854)	promoter-TSS (NM_025854)	-18	NM_025854	66935	Mm.292140	NM_025854		Cir1	1700023B02Rik|2810021A19Rik|Cicr|Cir	corepressor interacting with RBPJ, 1	protein-coding
diff_RLAGL_Vector_cond1_339	chr1	88399349	88399572	+	6.71410	NA	Intergenic	Intergenic	-7550	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding
diff_RLAGL_Vector_cond1_7389	chr4	140983519	140983812	+	6.71410	NA	Intergenic	Intergenic	-3208	NM_001164366	74772	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding
diff_RLAGL_Vector_cond1_6619	chr3	132207564	132207770	+	6.71382	NA	Intergenic	Intergenic	122375	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf homolog 2 (Xenopus laevis)	protein-coding
diff_RLAGL_Vector_cond1_529	chr1	138983564	138983873	+	6.71358	NA	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	6061	NR_108103	78229	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA
diff_RLAGL_Vector_cond1_8886	chr7	28392581	28392969	+	6.71353	NA	promoter-TSS (NM_019458)	promoter-TSS (NM_019458)	-85	NM_026042	67224	Mm.41647	NM_026042		Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding
diff_RLAGL_Vector_cond1_8548	chr6	112273533	112273812	+	6.71341	NA	promoter-TSS (NM_144799)	promoter-TSS (NM_144799)	-86	NM_144799	30937	Mm.234441	NM_144799	ENSMUSG00000057604	Lmcd1	AW455500|AW553074|dyxin	LIM and cysteine-rich domains 1	protein-coding
diff_RLAGL_Vector_cond1_8219	chr6	23392637	23393037	+	6.71329	NA	intron (NM_153163, intron 13 of 29)	intron (NM_153163, intron 13 of 29)	-144573	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding
diff_RLAGL_Vector_cond1_2585	chr13	22015778	22016000	+	6.71224	NA	Intergenic	Intergenic	-6148	NM_019429	54373	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding
diff_RLAGL_Vector_cond1_10509	chrX	103551377	103551747	+	6.71223	NA	Intergenic	Intergenic	6062	NR_033398	668415	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo
diff_RLAGL_Vector_cond1_10133	chr9	66712382	66712691	+	6.71165	NA	Intergenic	Intergenic	-1150	NM_001306148	76459	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anyhydrase 12	protein-coding
diff_RLAGL_Vector_cond1_5807	chr2	134785899	134786100	+	6.71136	NA	promoter-TSS (NM_001145830)	promoter-TSS (NM_001145830)	-165	NM_019677	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding
diff_RLAGL_Vector_cond1_7713	chr5	50459941	50460192	+	6.71049	NA	Intergenic	Intergenic	207304	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
diff_RLAGL_Vector_cond1_10124	chr9	64021985	64022475	+	6.70827	NA	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-171	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding
diff_RLAGL_Vector_cond1_6295	chr3	52455020	52455287	+	6.70814	NA	Intergenic	L1MA4|LINE|L1	186816	NM_019739	56458	Mm.29891	NM_019739		Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding
diff_RLAGL_Vector_cond1_5021	chr18	85400267	85400754	+	6.70802	NA	Intergenic	Intergenic	-448986	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding
diff_RLAGL_Vector_cond1_4567	chr17	69439158	69439498	+	6.70798	NA	promoter-TSS (NM_001145192)	promoter-TSS (NM_001145192)	2	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
diff_RLAGL_Vector_cond1_3882	chr16	17722760	17722977	+	6.70670	NA	promoter-TSS (NM_033609)	promoter-TSS (NM_033609)	32	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding
diff_RLAGL_Vector_cond1_9943	chr9	18291991	18292404	+	6.70624	NA	promoter-TSS (NM_025844)	promoter-TSS (NM_025844)	-70	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9595	chr8	68722830	68723129	+	6.70543	NA	intron (NM_001252623, intron 1 of 10)	intron (NM_001252623, intron 1 of 10)	12167	NM_172753	234356	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_552	chr1	146442678	146442891	+	6.70463	NA	Intergenic	Intergenic	-52882	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_1864	chr11	98457718	98457950	+	6.70433	NA	Intergenic	CpG	11000	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding
diff_RLAGL_Vector_cond1_4594	chr17	74717523	74718076	+	6.70429	NA	promoter-TSS (NM_152817)	promoter-TSS (NM_152817)	49	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding
diff_RLAGL_Vector_cond1_530	chr1	139422070	139422327	+	6.70414	NA	promoter-TSS (NM_172643)	promoter-TSS (NM_172643)	-185	NM_172643	226470	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41 homolog	protein-coding
diff_RLAGL_Vector_cond1_9716	chr8	94036949	94037299	+	6.70362	NA	promoter-TSS (NM_026623)	promoter-TSS (NM_026623)	-74	NM_001093757	270086	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3607	chr15	56765037	56765386	+	6.70335	NA	Intergenic	Intergenic	-70665	NM_008216	15117	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding
diff_RLAGL_Vector_cond1_8228	chr6	24707110	24707391	+	6.70253	NA	Intergenic	Intergenic	-25995	NM_028920	74409	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding
diff_RLAGL_Vector_cond1_3209	chr14	73524851	73525344	+	6.70250	NA	exon (NM_172527, exon 3 of 5)	exon (NM_172527, exon 3 of 5)	15048	NM_026119	67381	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding
diff_RLAGL_Vector_cond1_6046	chr2	169751046	169751416	+	6.70202	NA	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	117585	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
diff_RLAGL_Vector_cond1_1724	chr11	69795266	69795666	+	6.70119	NA	TTS (NM_010198)	TTS (NM_010198)	471	NM_009601	11443	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding
diff_RLAGL_Vector_cond1_7575	chr5	22548667	22548872	+	6.70108	NA	intron (NM_011959, intron 1 of 13)	MTC|LTR|ERVL-MaLR	1562	NM_011959	26429	Mm.412217	NM_011959	ENSMUSG00000029012	Orc5	AL033327|MmORC5|Orc5l	origin recognition complex, subunit 5	protein-coding
diff_RLAGL_Vector_cond1_7499	chr4	156059489	156060072	+	6.70060	NA	promoter-TSS (NR_132444)	promoter-TSS (NR_132444)	22	NR_132444	100415901	Mm.437006	NR_132444		Gm13648	OTTMUSG00000013217	predicted gene 13648	ncRNA
diff_RLAGL_Vector_cond1_1505	chr11	11898087	11898344	+	6.70026	NA	promoter-TSS (NM_001190448)	promoter-TSS (NM_001190448)	-71	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding
diff_RLAGL_Vector_cond1_5734	chr2	118388537	118388929	+	6.70023	NA	promoter-TSS (NM_001177806)	promoter-TSS (NM_001177806)	116	NM_013719	27103	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding
diff_RLAGL_Vector_cond1_5036	chr18	88893510	88894292	+	6.69852	NA	intron (NM_018821, intron 1 of 2)	CpG	306	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
diff_RLAGL_Vector_cond1_2818	chr13	74494011	74494315	+	6.69839	NA	promoter-TSS (NM_146231)	promoter-TSS (NM_146231)	-213	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding
diff_RLAGL_Vector_cond1_591	chr1	155438433	155438897	+	6.69726	NA	Intergenic	Intergenic	-21221	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding
diff_RLAGL_Vector_cond1_2034	chr12	3309865	3310309	+	6.69680	NA	promoter-TSS (NM_016676)	promoter-TSS (NM_016676)	-118	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_4984	chr18	78493351	78493717	+	6.69669	NA	intron (NM_207651, intron 2 of 21)	intron (NM_207651, intron 2 of 21)	103416	NM_207651	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
diff_RLAGL_Vector_cond1_3208	chr14	73445887	73446219	+	6.69598	NA	Intergenic	Intergenic	-60782	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding
diff_RLAGL_Vector_cond1_1193	chr10	82971594	82971842	+	6.69575	NA	Intergenic	Intergenic	-13779	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding
diff_RLAGL_Vector_cond1_10530	chrX	121637246	121637457	+	6.69415	NA	Intergenic	Lx8|LINE|L1	760034	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding
diff_RLAGL_Vector_cond1_6493	chr3	100489343	100489747	+	6.69361	NA	promoter-TSS (NM_001142952)	promoter-TSS (NM_001142952)	-353	NM_001142952	74645	Mm.226900	NM_001142952		Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding
diff_RLAGL_Vector_cond1_6700	chr3	147283678	147283955	+	6.69210	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	431449	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding
diff_RLAGL_Vector_cond1_8426	chr6	83057808	83058201	+	6.69183	NA	TTS (NM_001301649)	TTS (NM_001301649)	160	NM_033606	93838	Mm.140332	NM_033606	ENSMUSG00000009145	Dqx1	2310066E11Rik	DEAQ RNA-dependent ATPase	protein-coding
diff_RLAGL_Vector_cond1_7053	chr4	72865456	72866067	+	6.69121	NA	Intergenic	Intergenic	-13127	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding
diff_RLAGL_Vector_cond1_1278	chr10	99981010	99981232	+	6.69096	NA	Intergenic	Intergenic	-34703	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding
diff_RLAGL_Vector_cond1_5670	chr2	105230415	105230627	+	6.68851	NA	intron (NM_001159638, intron 1 of 2)	intron (NM_001159638, intron 1 of 2)	6179	NM_028747	74088	Mm.46188	NM_028747	ENSMUSG00000055312	Them7	0610012H03Rik	thioesterase superfamily member 7	protein-coding
diff_RLAGL_Vector_cond1_3422	chr15	5144019	5144233	+	6.68774	NA	intron (NM_001013367, intron 1 of 8)	CpG	265	NM_001013367	105787	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding
diff_RLAGL_Vector_cond1_9610	chr8	70797187	70797694	+	6.68769	NA	promoter-TSS (NR_106099)	promoter-TSS (NR_106099)	-695	NR_106099	102466823		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA
diff_RLAGL_Vector_cond1_3663	chr15	67305800	67306080	+	6.68569	NA	intron (NR_045140, intron 5 of 8)	intron (NR_045140, intron 5 of 8)	79171	NR_045140	69334	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA
diff_RLAGL_Vector_cond1_4245	chr17	8367591	8367899	+	6.68366	NA	Intergenic	Intergenic	-4651	NM_001161832	21331	Mm.482744	NM_013682		T2	brachyury2	brachyury 2	protein-coding
diff_RLAGL_Vector_cond1_3003	chr14	11637712	11638064	+	6.68099	NA	intron (NM_008981, intron 1 of 29)	intron (NM_008981, intron 1 of 29)	84335	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding
diff_RLAGL_Vector_cond1_4953	chr18	72593571	72593817	+	6.68018	NA	Intergenic	Intergenic	-242625	NM_007831	13176	Mm.167882	NM_007831		Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding
diff_RLAGL_Vector_cond1_5592	chr2	84242047	84242376	+	6.67964	NA	Intergenic	Intergenic	183055	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding
diff_RLAGL_Vector_cond1_8741	chr6	143326997	143327613	+	6.67954	NA	Intergenic	Intergenic	81417	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA
diff_RLAGL_Vector_cond1_1397	chr10	122274936	122275429	+	6.67819	NA	Intergenic	Intergenic	155485	NR_027637	100043513	Mm.429141	NR_027637		Gm4489	Gm241	predicted gene 4489	ncRNA
diff_RLAGL_Vector_cond1_6593	chr3	127837179	127837654	+	6.67813	NA	promoter-TSS (NM_145964)	promoter-TSS (NM_145964)	76	NM_145964	211556	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding
diff_RLAGL_Vector_cond1_4512	chr17	56830850	56831383	+	6.67675	NA	promoter-TSS (NM_009056)	promoter-TSS (NM_009056)	-108	NM_009056	19725	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding
diff_RLAGL_Vector_cond1_1231	chr10	88504110	88504382	+	6.67662	NA	promoter-TSS (NM_144807)	promoter-TSS (NM_144807)	-276	NM_001146690	212862	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_7718	chr5	50698197	50698491	+	6.67632	NA	Intergenic	Intergenic	445582	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
diff_RLAGL_Vector_cond1_7093	chr4	84108668	84108867	+	6.67525	NA	Intergenic	Intergenic	-63888	NR_130998	78238	Mm.243903	NR_130998		6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA
diff_RLAGL_Vector_cond1_9112	chr7	84689567	84689943	+	6.67523	NA	non-coding (NR_038175, exon 1 of 5)	non-coding (NR_038175, exon 1 of 5)	115	NR_038175	72495	Mm.382914	NR_038175		2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA
diff_RLAGL_Vector_cond1_2025	chr11	121451653	121451960	+	6.67493	NA	promoter-TSS (NM_029878)	promoter-TSS (NM_029878)	-143	NM_029878	108903	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding
diff_RLAGL_Vector_cond1_3038	chr14	20928815	20929402	+	6.67487	NA	promoter-TSS (NM_009502)	promoter-TSS (NM_009502)	-325	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding
diff_RLAGL_Vector_cond1_8143	chr6	5298296	5298518	+	6.67480	NA	promoter-TSS (NM_183308)	promoter-TSS (NM_183308)	-34	NM_183308	330260	Mm.126984	NM_183308		Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding
diff_RLAGL_Vector_cond1_6530	chr3	109158164	109158440	+	6.67413	NA	intron (NM_172685, intron 5 of 9)	MER77B|LTR|ERVL	35153	NM_172685	229731	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding
diff_RLAGL_Vector_cond1_8847	chr7	18326336	18326557	+	6.67342	NA	Intergenic	Intergenic	28547	NM_001163685	26438	Mm.89991	NM_011963	ENSMUSG00000003505	Psg18	Cea-3|Cea3|mmCGM6	pregnancy specific glycoprotein 18	protein-coding
diff_RLAGL_Vector_cond1_3677	chr15	72517041	72517346	+	6.67281	NA	intron (NM_001033876, intron 1 of 1)	intron (NM_001033876, intron 1 of 1)	29086	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding
diff_RLAGL_Vector_cond1_1554	chr11	24470549	24470756	+	6.67245	NA	Intergenic	Intergenic	-11257	NR_045857	71316	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA
diff_RLAGL_Vector_cond1_4990	chr18	79109114	79109478	+	6.67240	NA	promoter-TSS (NM_053099)	promoter-TSS (NM_053099)	95	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_1685	chr11	60878780	60879112	+	6.67215	NA	promoter-TSS (NM_001168507)	promoter-TSS (NM_001168507)	92	NM_173453	216821	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding
diff_RLAGL_Vector_cond1_811	chr1	192311062	192311608	+	6.67209	NA	intron (NM_010600, intron 6 of 10)	ORR1A2-int|LTR|ERVL-MaLR	120558	NM_001038607	16510	Mm.4489	NM_010600	ENSMUSG00000058248	Kcnh1	EAG1|Kv10.1|M-eag	potassium voltage-gated channel, subfamily H (eag-related), member 1	protein-coding
diff_RLAGL_Vector_cond1_139	chr1	38626980	38627214	+	6.67195	NA	exon (NM_001290814, exon 1 of 22)	exon (NM_001290814, exon 1 of 22)	147	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding
diff_RLAGL_Vector_cond1_9466	chr8	35765337	35765725	+	6.67172	NA	Intergenic	Intergenic	61028	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding
diff_RLAGL_Vector_cond1_9744	chr8	105269656	105269860	+	6.67145	NA	promoter-TSS (NR_045689)	promoter-TSS (NR_045689)	-43	NR_045689	26386	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding
diff_RLAGL_Vector_cond1_242	chr1	69687118	69687658	+	6.66980	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-1428	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding
diff_RLAGL_Vector_cond1_5767	chr2	125625084	125625463	+	6.66968	NA	promoter-TSS (NM_001081091)	promoter-TSS (NM_001081091)	-160	NM_001081091	99100	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding
diff_RLAGL_Vector_cond1_8639	chr6	127976993	127977412	+	6.66961	NA	intron (NM_175414, intron 3 of 8)	intron (NM_175414, intron 3 of 8)	89580	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding
diff_RLAGL_Vector_cond1_8570	chr6	115503675	115504058	+	6.66895	NA	Intergenic	Intergenic	-40838	NM_199033	381802	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease 2 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10271	chr9	105131800	105132103	+	6.66843	NA	promoter-TSS (NM_029385)	promoter-TSS (NM_029385)	-146	NM_029385	75686	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding
diff_RLAGL_Vector_cond1_8435	chr6	85333009	85333214	+	6.66816	NA	intron (NM_178639, intron 1 of 13)	CpG	311	NM_178639	94282	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding
diff_RLAGL_Vector_cond1_4664	chr17	87447123	87447463	+	6.66630	NA	promoter-TSS (NM_007589)	promoter-TSS (NM_007589)	-358	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding
diff_RLAGL_Vector_cond1_3356	chr14	118051068	118051350	+	6.66620	NA	intron (NM_010024, intron 1 of 7)	intron (NM_010024, intron 1 of 7)	1037	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding
diff_RLAGL_Vector_cond1_1024	chr10	44607429	44607749	+	6.66546	NA	Intergenic	Intergenic	-148841	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding
diff_RLAGL_Vector_cond1_10590	chrX	159116049	159116604	+	6.66440	NA	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-139456	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding
diff_RLAGL_Vector_cond1_10352	chr9	120303743	120303981	+	6.66353	NA	promoter-TSS (NM_144557)	promoter-TSS (NM_144557)	-211	NM_144557	245049	Mm.100936	NM_144557	ENSMUSG00000041794	Myrip	A230081N12Rik|Slac2-c|Slac2c	myosin VIIA and Rab interacting protein	protein-coding
diff_RLAGL_Vector_cond1_3709	chr15	77740558	77740767	+	6.66275	NA	Intergenic	Intergenic	11541	NM_001168660	71898	Mm.422856	NM_173743	ENSMUSG00000068246	Apol9b	2310016F22Rik	apolipoprotein L 9b	protein-coding
diff_RLAGL_Vector_cond1_9015	chr7	64305140	64305374	+	6.66267	NA	intron (NM_172742, intron 5 of 15)	intron (NM_172742, intron 5 of 15)	17587	NM_172742	233315	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding
diff_RLAGL_Vector_cond1_6979	chr4	52176224	52176599	+	6.66224	NA	Intergenic	Intergenic	-125301	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA
diff_RLAGL_Vector_cond1_9045	chr7	70501896	70502154	+	6.66220	NA	Intergenic	Intergenic	-135279	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding
diff_RLAGL_Vector_cond1_3595	chr15	54114067	54114587	+	6.66107	NA	Intergenic	Intergenic	164157	NM_008764	18383	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding
diff_RLAGL_Vector_cond1_4456	chr17	47748709	47749010	+	6.66048	NA	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	10928	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding
diff_RLAGL_Vector_cond1_7047	chr4	72201039	72201390	+	6.65892	NA	promoter-TSS (NM_001285532)	promoter-TSS (NM_001285532)	-30	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA
diff_RLAGL_Vector_cond1_1374	chr10	119206374	119206771	+	6.65777	NA	intron (NM_027994, intron 14 of 14)	PB1D10|SINE|Alu	33483	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding
diff_RLAGL_Vector_cond1_2862	chr13	89907565	89907918	+	6.65744	NA	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-165229	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding
diff_RLAGL_Vector_cond1_8545	chr6	109159675	109159994	+	6.65726	NA	Intergenic	RMER19B|LTR|ERVK	331193	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
diff_RLAGL_Vector_cond1_4131	chr16	78635327	78635565	+	6.65692	NA	Intergenic	Intergenic	-58758	NM_001252438	67102	Mm.37332	NM_025967		D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding
diff_RLAGL_Vector_cond1_4414	chr17	40794013	40794243	+	6.65665	NA	promoter-TSS (NM_001204071)	promoter-TSS (NM_001204071)	18	NM_009420	22024	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding
diff_RLAGL_Vector_cond1_2835	chr13	81137026	81137352	+	6.65590	NA	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	173115	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA
diff_RLAGL_Vector_cond1_2851	chr13	86274980	86275502	+	6.65539	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-228446	NM_007749	12867	Mm.378898	NM_007749		Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding
diff_RLAGL_Vector_cond1_3285	chr14	99943210	99943443	+	6.65414	NA	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	206470	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
diff_RLAGL_Vector_cond1_7025	chr4	63410464	63410859	+	6.65233	NA	Intergenic	CpG	-7216	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding
diff_RLAGL_Vector_cond1_7061	chr4	75730974	75731295	+	6.64857	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	-452848	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
diff_RLAGL_Vector_cond1_2637	chr13	36736154	36736417	+	6.64815	NA	Intergenic	Intergenic	-1808	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding
diff_RLAGL_Vector_cond1_6865	chr4	20777895	20778377	+	6.64762	NA	intron (NM_172987, intron 1 of 4)	CpG	532	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding
diff_RLAGL_Vector_cond1_5433	chr2	46433535	46433785	+	6.64756	NA	Intergenic	Lx9|LINE|L1	737055	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
diff_RLAGL_Vector_cond1_9100	chr7	82866878	82867259	+	6.64703	NA	promoter-TSS (NM_175366)	promoter-TSS (NM_175366)	-265	NM_175366	108797	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 homolog B (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_1641	chr11	50767102	50767375	+	6.64697	NA	intron (NM_175643, intron 5 of 21)	MLT1A1|LTR|ERVL-MaLR	60493	NM_013922	30944	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding
diff_RLAGL_Vector_cond1_9226	chr7	125630122	125630347	+	6.64681	NA	intron (NM_021887, intron 7 of 8)	intron (NM_021887, intron 7 of 8)	26805	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding
diff_RLAGL_Vector_cond1_2588	chr13	23488780	23489026	+	6.64625	NA	promoter-TSS (NM_001289615)	promoter-TSS (NM_001289615)	-46	NM_001289614	238555	Mm.129668	NM_175938		Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding
diff_RLAGL_Vector_cond1_5304	chr2	15534484	15534701	+	6.64577	NA	intron (NM_001310455, intron 1 of 38)	intron (NM_001310455, intron 1 of 38)	8113	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2306	chr12	72761204	72761684	+	6.64573	NA	5' UTR (NM_008910, exon 1 of 6)	5' UTR (NM_008910, exon 1 of 6)	233	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding
diff_RLAGL_Vector_cond1_5120	chr19	24606477	24606844	+	6.64509	NA	Intergenic	Intergenic	-50833	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding
diff_RLAGL_Vector_cond1_6583	chr3	126695443	126695691	+	6.64013	NA	intron (NM_001293665, intron 3 of 19)	intron (NM_001293665, intron 3 of 19)	98616	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
diff_RLAGL_Vector_cond1_5708	chr2	113311296	113311593	+	6.63806	NA	intron (NR_035479, intron 2 of 3)	intron (NR_035479, intron 2 of 3)	-16292	NM_010230	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|ld	formin 1	protein-coding
diff_RLAGL_Vector_cond1_2626	chr13	31578501	31578702	+	6.63653	NA	intron (NR_029439, intron 3 of 5)	intron (NR_029439, intron 3 of 5)	3912	NR_029439	71307	Mm.376184	NR_029439	ENSMUSG00000038408	1700018A04Rik	4930551G20Rik|4933439J11Rik	RIKEN cDNA 1700018A04 gene	ncRNA
diff_RLAGL_Vector_cond1_8869	chr7	25076800	25077312	+	6.63594	NA	promoter-TSS (NM_175477)	promoter-TSS (NM_175477)	-149	NM_001168506	232976	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding
diff_RLAGL_Vector_cond1_10258	chr9	102734591	102735034	+	6.63505	NA	Intergenic	Intergenic	-4836	NR_033301	434510	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA
diff_RLAGL_Vector_cond1_4391	chr17	34646879	34647078	+	6.63440	NA	promoter-TSS (NM_017406)	promoter-TSS (NM_017406)	-168	NM_017406	12915	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding
diff_RLAGL_Vector_cond1_10497	chrX	96455118	96455614	+	6.63434	NA	promoter-TSS (NM_181273)	promoter-TSS (NM_181273)	-70	NM_010417	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding
diff_RLAGL_Vector_cond1_9749	chr8	105860276	105860641	+	6.63391	NA	promoter-TSS (NR_033574)	promoter-TSS (NR_033574)	-176	NM_026532	68051	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding
diff_RLAGL_Vector_cond1_4643	chr17	83999080	83999558	+	6.63350	NA	intron (NR_130994, intron 1 of 1)	intron (NR_130994, intron 1 of 1)	767	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA
diff_RLAGL_Vector_cond1_1606	chr11	35982840	35983068	+	6.63259	NA	Intergenic	Intergenic	-2865	NM_170779	211652	Mm.31267	NM_170779		Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9005	chr7	60244294	60244503	+	6.63196	NA	Intergenic	Intergenic	-104179	NM_001082962	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding
diff_RLAGL_Vector_cond1_5496	chr2	60430682	60430896	+	6.63133	NA	intron (NM_008867, intron 23 of 29)	ORR1F|LTR|ERVL-MaLR	19264	NR_046065	100039176	Mm.261790	NR_046065	ENSMUSG00000087283	Gm13580	OTTMUSG00000012842	predicted gene 13580	ncRNA
diff_RLAGL_Vector_cond1_6154	chr3	9113491	9113906	+	6.62884	NA	Intergenic	Intergenic	51734	NR_040597	75149	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA
diff_RLAGL_Vector_cond1_2771	chr13	67421204	67421752	+	6.62871	NA	promoter-TSS (NM_177811)	promoter-TSS (NM_177811)	-60	NM_177811	328274	Mm.222470	NM_177811	ENSMUSG00000055560	Zfp459	9930025G17Rik|Rslcan-14	zinc finger protein 459	protein-coding
diff_RLAGL_Vector_cond1_4006	chr16	49766371	49766578	+	6.62843	NA	Intergenic	L1MC4|LINE|L1	67180	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding
diff_RLAGL_Vector_cond1_4174	chr16	88583314	88583601	+	6.62834	NA	Intergenic	Intergenic	-20274	NM_018778	54420	Mm.25836	NM_018778	ENSMUSG00000050520	Cldn8	AI648025	claudin 8	protein-coding
diff_RLAGL_Vector_cond1_2622	chr13	31477207	31477503	+	6.62372	NA	Intergenic	Intergenic	-80815	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding
diff_RLAGL_Vector_cond1_10116	chr9	61946650	61946909	+	6.62371	NA	promoter-TSS (NM_024245)	promoter-TSS (NM_024245)	20	NM_024245	71819	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding
diff_RLAGL_Vector_cond1_9215	chr7	121734134	121734350	+	6.62323	NA	promoter-TSS (NM_011326)	promoter-TSS (NM_011326)	-237	NM_011326	20278	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding
diff_RLAGL_Vector_cond1_3210	chr14	73552494	73553075	+	6.62263	NA	promoter-TSS (NM_011506)	promoter-TSS (NM_011506)	-2	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding
diff_RLAGL_Vector_cond1_402	chr1	106171235	106171735	+	6.62160	NA	promoter-TSS (NR_040630)	promoter-TSS (NR_040630)	39	NR_040630	626049	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA
diff_RLAGL_Vector_cond1_2581	chr13	21530984	21531253	+	6.61710	NA	promoter-TSS (NM_139141)	promoter-TSS (NM_139141)	-4	NM_001251833	93681	Mm.290601	NM_139141	ENSMUSG00000063894	Zkscan8	2510038J07Rik|D430019P06Rik|LD5-1|Zfp192	zinc finger with KRAB and SCAN domains 8	protein-coding
diff_RLAGL_Vector_cond1_2014	chr11	120539434	120539684	+	6.61665	NA	TTS (NM_008101)	TTS (NM_008101)	8832	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding
diff_RLAGL_Vector_cond1_6742	chr3	153902825	153903069	+	6.61523	NA	intron (NM_031870, intron 1 of 19)	RMER16_Mm|LTR|ERVK	1944	NM_001282054	55993	Mm.272226	NM_031870	ENSMUSG00000005493	Msh4	4930485C04Rik|AV144863|mMsh4	mutS homolog 4 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_7038	chr4	70410507	70410719	+	6.61485	NA	promoter-TSS (NM_145990)	promoter-TSS (NM_145990)	-178	NM_145990	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_106	chr1	25830595	25830798	+	6.61404	NA	promoter-TSS (NM_175642)	promoter-TSS (NM_175642)	-989	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
diff_RLAGL_Vector_cond1_5223	chr19	58396761	58396981	+	6.61369	NA	intron (NR_104342, intron 4 of 11)	intron (NR_104342, intron 4 of 11)	57723	NM_001285457	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding
diff_RLAGL_Vector_cond1_2873	chr13	91724277	91724516	+	6.61345	NA	intron (NR_028314, intron 1 of 1)	RMER1B|Other|Other	-17125	NM_028790	74156	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding
diff_RLAGL_Vector_cond1_1296	chr10	105523749	105524042	+	6.61301	NA	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	50584	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
diff_RLAGL_Vector_cond1_9675	chr8	84066521	84066939	+	6.61224	NA	promoter-TSS (NM_009055)	promoter-TSS (NM_009055)	-106	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding
diff_RLAGL_Vector_cond1_673	chr1	172462353	172462883	+	6.61114	NA	Intergenic	Intergenic	-12742	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding
diff_RLAGL_Vector_cond1_9373	chr8	10946062	10946490	+	6.61103	NA	Intergenic	HAL1ME|LINE|L1	-17819	NR_030715	665306	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA
diff_RLAGL_Vector_cond1_8918	chr7	38061115	38061370	+	6.60768	NA	Intergenic	CpG	-41690	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding
diff_RLAGL_Vector_cond1_9496	chr8	41820632	41820843	+	6.60734	NA	Intergenic	Intergenic	-6530	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA
diff_RLAGL_Vector_cond1_9612	chr8	71272210	71272817	+	6.60624	NA	promoter-TSS (NM_015742)	promoter-TSS (NM_015742)	77	NM_029621	76478	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding
diff_RLAGL_Vector_cond1_4233	chr17	4769349	4769573	+	6.60585	NA	Intergenic	L2b|LINE|L2	134481	NR_130984	75117	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA
diff_RLAGL_Vector_cond1_9743	chr8	105170491	105170726	+	6.60584	NA	promoter-TSS (NM_001161458)	promoter-TSS (NM_001161458)	-66	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding
diff_RLAGL_Vector_cond1_608	chr1	160194872	160195307	+	6.60450	NA	promoter-TSS (NM_025474)	promoter-TSS (NM_025474)	-171	NM_025474	64659	Mm.29599	NM_025474		Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding
diff_RLAGL_Vector_cond1_5756	chr2	123911865	123912101	+	6.60425	NA	Intergenic	RLTR44A|LTR|ERVK	-177986	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
diff_RLAGL_Vector_cond1_1097	chr10	68231243	68231737	+	6.60367	NA	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	47236	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding
diff_RLAGL_Vector_cond1_6190	chr3	19638823	19639113	+	6.60320	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-5492	NM_001081281	381485	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding
diff_RLAGL_Vector_cond1_1178	chr10	81145745	81146295	+	6.60312	NA	intron (NM_010731, intron 2 of 2)	intron (NM_010731, intron 2 of 2)	9749	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding
diff_RLAGL_Vector_cond1_4441	chr17	45994544	45994753	+	6.60273	NA	Intergenic	Intergenic	30515	NM_001110268	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding
diff_RLAGL_Vector_cond1_2164	chr12	33057243	33057589	+	6.60190	NA	intron (NM_001024478, intron 8 of 19)	intron (NM_001024478, intron 8 of 19)	35459	NM_001024478	68764	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding
diff_RLAGL_Vector_cond1_4529	chr17	63246116	63246331	+	6.60188	NA	intron (NM_015794, intron 6 of 8)	RMER17B|LTR|ERVK	66750	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA
diff_RLAGL_Vector_cond1_1952	chr11	114852008	114852351	+	6.60182	NA	5' UTR (NM_147217, exon 1 of 4)	5' UTR (NM_147217, exon 1 of 4)	149	NM_147217	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding
diff_RLAGL_Vector_cond1_6126	chr2	180222313	180222566	+	6.60053	NA	intron (NM_001081171, intron 1 of 78)	intron (NM_001081171, intron 1 of 78)	3420	NM_001081171	16776	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding
diff_RLAGL_Vector_cond1_8085	chr5	143817587	143818084	+	6.59856	NA	Intergenic	CpG	-54027	NM_013557	15467	Mm.389709	NM_013557		Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding
diff_RLAGL_Vector_cond1_1655	chr11	53759086	53759387	+	6.59844	NA	Intergenic	L2b|LINE|L2	4418	NR_106131	102465772		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA
diff_RLAGL_Vector_cond1_7434	chr4	148038592	148038799	+	6.59816	NA	promoter-TSS (NM_010840)	promoter-TSS (NM_010840)	118	NM_011929	26372	Mm.89987	NM_011929	ENSMUSG00000029016	Clcn6	AI850629|Clc6	chloride channel, voltage-sensitive 6	protein-coding
diff_RLAGL_Vector_cond1_9050	chr7	72292234	72292515	+	6.59731	NA	intron (NM_001024703, intron 1 of 22)	intron (NM_001024703, intron 1 of 22)	14221	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding
diff_RLAGL_Vector_cond1_4521	chr17	57796654	57796998	+	6.59654	NA	intron (NM_001081653, intron 1 of 23)	intron (NM_001081653, intron 1 of 23)	27256	NM_001081653	620292	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding
diff_RLAGL_Vector_cond1_7326	chr4	133339484	133339695	+	6.59641	NA	promoter-TSS (NM_199306)	promoter-TSS (NM_199306)	-274	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding
diff_RLAGL_Vector_cond1_6349	chr3	63068907	63069213	+	6.59620	NA	Intergenic	RLTR19-int|LTR|ERVK	-226375	NM_001289462	17380	Mm.296022	NM_008604		Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding
diff_RLAGL_Vector_cond1_8127	chr5	151368543	151368970	+	6.59477	NA	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	81	NR_045699	625175	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA
diff_RLAGL_Vector_cond1_10437	chrX	53463535	53463840	+	6.59449	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	28769	NR_034074	69501	Mm.63828	NM_175147	ENSMUSG00000060967	Etd	1700030K02Rik	embryonic testis differentiation	ncRNA
diff_RLAGL_Vector_cond1_2775	chr13	67500074	67500290	+	6.59386	NA	intron (NM_001007575, intron 1 of 3)	intron (NM_001007575, intron 1 of 3)	340	NM_001007575	238693	Mm.478914	NM_001007575	ENSMUSG00000071291	Zfp58	A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817	zinc finger protein 58	protein-coding
diff_RLAGL_Vector_cond1_5948	chr2	153231790	153232392	+	6.59362	NA	exon (NM_018807, exon 3 of 3)	exon (NM_018807, exon 3 of 3)	-6650	NM_198617	241732	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding
diff_RLAGL_Vector_cond1_10222	chr9	92373801	92374020	+	6.59222	NA	Intergenic	Intergenic	64533	NM_001033184	78459	Mm.179195	NM_001033184	ENSMUSG00000074139	1700057G04Rik	-	RIKEN cDNA 1700057G04 gene	protein-coding
diff_RLAGL_Vector_cond1_10339	chr9	118805926	118806126	+	6.59146	NA	intron (NM_133721, intron 17 of 27)	L2a|LINE|L2	94334	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding
diff_RLAGL_Vector_cond1_10199	chr9	87022153	87022370	+	6.59117	NA	intron (NM_024195, intron 1 of 15)	CpG	232	NM_024195	266690	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding
diff_RLAGL_Vector_cond1_8327	chr6	54171205	54171446	+	6.59053	NA	intron (NM_001163640, intron 1 of 12)	L2a|LINE|L2	-93533	NM_001311133	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding
diff_RLAGL_Vector_cond1_10615	chrX	166533567	166533873	+	6.58986	NA	intron (NM_019397, intron 9 of 11)	intron (NM_019397, intron 9 of 11)	-23242	NM_001007577	245695	Mm.336318	NM_001007577	ENSMUSG00000051224	Tceanc	A630018P17Rik|Gm390	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding
diff_RLAGL_Vector_cond1_1643	chr11	50916064	50916330	+	6.58968	NA	promoter-TSS (NM_001044698)	promoter-TSS (NM_001044698)	-21	NM_001044698	22678	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding
diff_RLAGL_Vector_cond1_9540	chr8	54077095	54077336	+	6.58943	NA	promoter-TSS (NM_009506)	promoter-TSS (NM_009506)	-317	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
diff_RLAGL_Vector_cond1_4241	chr17	5896185	5896384	+	6.58911	NA	intron (NM_025664, intron 4 of 17)	intron (NM_025664, intron 4 of 17)	-44996	NM_001113352	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding
diff_RLAGL_Vector_cond1_7121	chr4	89688511	89688826	+	6.58787	NA	exon (NM_175647, exon 1 of 2)	exon (NM_175647, exon 1 of 2)	470	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding
diff_RLAGL_Vector_cond1_5047	chr19	4113696	4114031	+	6.58760	NA	non-coding (NR_075078, exon 24 of 24)	non-coding (NR_075078, exon 24 of 24)	7712	NM_001276284	11632	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding
diff_RLAGL_Vector_cond1_8900	chr7	30812438	30812794	+	6.58758	NA	Intergenic	Intergenic	8361	NM_001168512	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding
diff_RLAGL_Vector_cond1_5780	chr2	128470411	128470617	+	6.58671	NA	Intergenic	Intergenic	-41163	NR_028589	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA
diff_RLAGL_Vector_cond1_6032	chr2	167747540	167747875	+	6.58616	NA	Intergenic	Intergenic	56530	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA
diff_RLAGL_Vector_cond1_7008	chr4	61810992	61811245	+	6.58527	NA	Intergenic	Intergenic	24062	NM_008649	17844	Mm.445286	NM_008649	ENSMUSG00000058523	Mup5	Mup18	major urinary protein 5	protein-coding
diff_RLAGL_Vector_cond1_9801	chr8	117158017	117158315	+	6.58503	NA	promoter-TSS (NM_001081151)	promoter-TSS (NM_001081151)	31	NM_001081151	209239	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding
diff_RLAGL_Vector_cond1_5316	chr2	19371430	19372146	+	6.58365	NA	intron (NM_029619, intron 1 of 4)	CpG	152	NM_029619	76467	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding
diff_RLAGL_Vector_cond1_309	chr1	82429194	82429612	+	6.58278	NA	intron (NM_001122685, intron 6 of 6)	intron (NM_001122685, intron 6 of 6)	90354	NM_001122685	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8467	chr6	90422531	90422801	+	6.58171	NA	intron (NM_173775, intron 2 of 16)	intron (NM_173775, intron 2 of 16)	5814	NM_173775	243538	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding
diff_RLAGL_Vector_cond1_1220	chr10	86675492	86675691	+	6.58109	NA	Intergenic	Intergenic	-9936	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo
diff_RLAGL_Vector_cond1_9463	chr8	35633398	35633626	+	6.58080	NA	intron (NM_001081279, intron 1 of 2)	B4A|SINE|B4	-44492	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA
diff_RLAGL_Vector_cond1_382	chr1	97704645	97704937	+	6.58002	NA	Intergenic	Lx9|LINE|L1	-42773	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding
diff_RLAGL_Vector_cond1_7815	chr5	86065800	86066109	+	6.57913	NA	promoter-TSS (NM_007683)	promoter-TSS (NM_007683)	-371	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
diff_RLAGL_Vector_cond1_4355	chr17	28847386	28847644	+	6.57880	NA	Intergenic	Intergenic	-10896	NM_001034885	433091	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7571	chr5	21424638	21425175	+	6.57809	NA	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	3	NM_177869	330050	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding
diff_RLAGL_Vector_cond1_6961	chr4	48279504	48279864	+	6.57778	NA	promoter-TSS (NM_029572)	promoter-TSS (NM_029572)	-76	NM_001281978	16348	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding
diff_RLAGL_Vector_cond1_3664	chr15	67315250	67315502	+	6.57759	NA	intron (NR_045140, intron 5 of 8)	MER5A|DNA|hAT-Charlie	88607	NR_045140	69334	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA
diff_RLAGL_Vector_cond1_10089	chr9	54981579	54981948	+	6.57720	NA	intron (NM_176844, intron 1 of 5)	intron (NM_176844, intron 1 of 5)	883	NM_176844	110835	Mm.103778	NM_176844	ENSMUSG00000035594	Chrna5	Acra-5|Acra5	cholinergic receptor, nicotinic, alpha polypeptide 5	protein-coding
diff_RLAGL_Vector_cond1_2083	chr12	12941713	12941990	+	6.57575	NA	promoter-TSS (NM_008709)	promoter-TSS (NM_008709)	-15	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	protein-coding
diff_RLAGL_Vector_cond1_9713	chr8	93332746	93333164	+	6.57449	NA	intron (NM_021456, intron 3 of 13)	intron (NM_021456, intron 3 of 13)	4254	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding
diff_RLAGL_Vector_cond1_1040	chr10	52417262	52417545	+	6.57424	NA	promoter-TSS (NM_030250)	promoter-TSS (NM_030250)	-144	NM_030250	52014	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8656	chr6	131327149	131327399	+	6.57321	NA	Intergenic	Intergenic	-13447	NM_172891	243659	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding
diff_RLAGL_Vector_cond1_10354	chr9	120550769	120551104	+	6.57242	NA	intron (NM_178676, intron 3 of 10)	intron (NM_178676, intron 3 of 10)	11118	NM_178676	215446	Mm.76648	NM_178676	ENSMUSG00000041608	Entpd3	Cd39l3|HB6|NTPDase-3	ectonucleoside triphosphate diphosphohydrolase 3	protein-coding
diff_RLAGL_Vector_cond1_1800	chr11	86586801	86587209	+	6.57126	NA	intron (NM_029478, intron 10 of 11)	intron (NM_029478, intron 10 of 11)	-2847	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA
diff_RLAGL_Vector_cond1_1530	chr11	19265438	19265868	+	6.57068	NA	Intergenic	Intergenic	200378	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA
diff_RLAGL_Vector_cond1_8288	chr6	42645113	42645569	+	6.56879	NA	promoter-TSS (NM_146174)	promoter-TSS (NM_146174)	-300	NM_146174	232748	Mm.279659	NM_146174	ENSMUSG00000029851	Tcaf2	Fam115c	TRPM8 channel-associated factor 2	protein-coding
diff_RLAGL_Vector_cond1_4851	chr18	42899288	42899683	+	6.56867	NA	promoter-TSS (NR_073583)	promoter-TSS (NR_073583)	21	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
diff_RLAGL_Vector_cond1_7433	chr4	147941338	147941550	+	6.56793	NA	exon (NM_029841, exon 1 of 3)	exon (NM_029841, exon 1 of 3)	549	NM_029841	77034	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding
diff_RLAGL_Vector_cond1_4230	chr17	3295177	3295453	+	6.56674	NA	Intergenic	Intergenic	-31258	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
diff_RLAGL_Vector_cond1_7579	chr5	23010577	23010810	+	6.56597	NA	intron (NM_001081231, intron 1 of 3)	intron (NM_001081231, intron 1 of 3)	-263809	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA
diff_RLAGL_Vector_cond1_4760	chr18	16060536	16060893	+	6.56583	NA	Intergenic	Intergenic	-342668	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
diff_RLAGL_Vector_cond1_335	chr1	88098765	88098965	+	6.56561	NA	intron (NM_201642, intron 1 of 4)	intron (NM_201642, intron 1 of 4)	3864	NM_201642	394432	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding
diff_RLAGL_Vector_cond1_8988	chr7	52256423	52256860	+	6.56507	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-240925	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding
diff_RLAGL_Vector_cond1_5511	chr2	62664041	62664593	+	6.56485	NA	promoter-TSS (NM_145523)	promoter-TSS (NM_145523)	-10	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding
diff_RLAGL_Vector_cond1_57	chr1	16105448	16105952	+	6.56429	NA	promoter-TSS (NM_133832)	promoter-TSS (NM_133832)	-182	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding
diff_RLAGL_Vector_cond1_7024	chr4	63307497	63307700	+	6.56399	NA	intron (NM_025685, intron 36 of 60)	intron (NM_025685, intron 36 of 60)	-36958	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding
diff_RLAGL_Vector_cond1_2187	chr12	37080008	37080237	+	6.56375	NA	Intergenic	RLTR9D|LTR|ERVK	-28424	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_868	chr10	8899224	8899442	+	6.56374	NA	Intergenic	Intergenic	-13263	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8880	chr7	27593049	27593268	+	6.56341	NA	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	1598	NM_001110208	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding
diff_RLAGL_Vector_cond1_2293	chr12	70825206	70825896	+	6.56195	NA	promoter-TSS (NM_028127)	promoter-TSS (NM_028127)	37	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_6649	chr3	139037055	139037359	+	6.56089	NA	intron (NM_145544, intron 2 of 13)	RSINE1|SINE|B4	37994	NM_001286759	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding
diff_RLAGL_Vector_cond1_1989	chr11	118355391	118355612	+	6.56069	NA	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	-90	NM_011594	21858	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding
diff_RLAGL_Vector_cond1_1017	chr10	41552752	41553032	+	6.56036	NA	intron (NM_001303469, intron 15 of 20)	intron (NM_001303469, intron 15 of 20)	-15124	NR_045341	70538	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA
diff_RLAGL_Vector_cond1_5426	chr2	44988518	44989093	+	6.55984	NA	exon (NM_015753, exon 10 of 10)	exon (NM_015753, exon 10 of 10)	34372	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA
diff_RLAGL_Vector_cond1_8708	chr6	138334182	138334424	+	6.55911	NA	Intergenic	Intergenic	-88802	NR_126073	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA
diff_RLAGL_Vector_cond1_6650	chr3	139205588	139205967	+	6.55845	NA	promoter-TSS (NM_198659)	promoter-TSS (NM_198659)	-116	NM_198659	381476	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding
diff_RLAGL_Vector_cond1_1060	chr10	56339194	56339419	+	6.55724	NA	Intergenic	Intergenic	-37994	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_2968	chr13	117948085	117948511	+	6.55520	NA	intron (NM_010408, intron 6 of 7)	intron (NM_010408, intron 6 of 7)	-228287	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
diff_RLAGL_Vector_cond1_5497	chr2	60689061	60689433	+	6.55485	NA	intron (NM_001159564, intron 1 of 17)	intron (NM_001159564, intron 1 of 17)	-15554	NM_021359	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding
diff_RLAGL_Vector_cond1_10400	chrX	12128658	12128969	+	6.55302	NA	intron (NM_001168321, intron 1 of 13)	CpG	31533	NR_045434	72937	Mm.440386	NR_045434		2900008C10Rik	-	RIKEN cDNA 2900008C10 gene	ncRNA
diff_RLAGL_Vector_cond1_1965	chr11	116024329	116024560	+	6.55228	NA	promoter-TSS (NM_008211)	promoter-TSS (NM_008211)	60	NM_008211	15081	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding
diff_RLAGL_Vector_cond1_6811	chr4	8218106	8218393	+	6.55212	NA	intron (NM_007592, intron 3 of 8)	intron (NM_007592, intron 3 of 8)	20792	NM_007592	12319	Mm.119320	NM_007592		Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding
diff_RLAGL_Vector_cond1_840	chr10	3972879	3973189	+	6.55140	NA	promoter-TSS (NM_001170786)	promoter-TSS (NM_001170786)	-41	NM_001170786	270685	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
diff_RLAGL_Vector_cond1_99	chr1	24385896	24386138	+	6.55118	NA	intron (NM_007733, intron 15 of 50)	intron (NM_007733, intron 15 of 50)	190814	NM_001290691	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_2741	chr13	63082646	63082939	+	6.55058	NA	intron (NM_001289924, intron 5 of 16)	intron (NM_001289924, intron 5 of 16)	117899	NM_001289926	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|Aopep|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding
diff_RLAGL_Vector_cond1_5986	chr2	160225446	160225802	+	6.55029	NA	Intergenic	Intergenic	101870	NM_001033411	329554	Mm.291144	NM_001033411		Gm826	-	predicted gene 826	protein-coding
diff_RLAGL_Vector_cond1_2395	chr12	102439595	102439989	+	6.54999	NA	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-95	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding
diff_RLAGL_Vector_cond1_1512	chr11	15250092	15250439	+	6.54968	NA	Intergenic	Intergenic	651025	NM_001164166	432536	Mm.33646	NM_001164166		Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding
diff_RLAGL_Vector_cond1_5108	chr19	20547015	20547351	+	6.54934	NA	intron (NR_045778, intron 1 of 2)	intron (NR_045778, intron 1 of 2)	5147	NR_045778	320155	Mm.447252	NR_045778		C730002L08Rik	-	RIKEN cDNA C730002L08 gene	ncRNA
diff_RLAGL_Vector_cond1_5860	chr2	141271576	141271929	+	6.54827	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-600276	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_8573	chr6	115601910	115602252	+	6.54728	NA	intron (NM_023290, intron 1 of 7)	CpG	143	NM_023290	67027	Mm.101316	NM_023290		Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding
diff_RLAGL_Vector_cond1_6121	chr2	180024658	180025021	+	6.54671	NA	promoter-TSS (NM_177727)	promoter-TSS (NM_177727)	-148	NM_177727	241846	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM14 homolog B (SCD6, S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10446	chrX	65449451	65449662	+	6.54650	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	401912	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding
diff_RLAGL_Vector_cond1_5155	chr19	40307327	40307667	+	6.54628	NA	intron (NM_001034962, intron 20 of 22)	intron (NM_001034962, intron 20 of 22)	-35881	NM_016861	54132	Mm.5567	NM_016861		Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding
diff_RLAGL_Vector_cond1_4937	chr18	68976448	68976722	+	6.54619	NA	Intergenic	Intergenic	-25057	NR_038051	78931	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA
diff_RLAGL_Vector_cond1_7774	chr5	72203160	72203443	+	6.54619	NA	promoter-TSS (NM_153389)	promoter-TSS (NM_153389)	-28	NR_003966	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding
diff_RLAGL_Vector_cond1_2510	chr13	3700786	3701076	+	6.54612	NA	Intergenic	Intergenic	66899	NM_178283	142688	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding
diff_RLAGL_Vector_cond1_4890	chr18	55624088	55624487	+	6.54521	NA	Intergenic	Intergenic	-634107	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
diff_RLAGL_Vector_cond1_1148	chr10	78664650	78664914	+	6.54499	NA	Intergenic	RodERV21-int|LTR|ERV1	-46708	NM_001011737	257883	Mm.278379	NM_001011737	ENSMUSG00000071185	Olfr1357	MOR128-3|MOR128-4	olfactory receptor 1357	protein-coding
diff_RLAGL_Vector_cond1_3771	chr15	93318884	93319132	+	6.54418	NA	intron (NR_028315, intron 2 of 4)	intron (NR_028315, intron 2 of 4)	17927	NR_028315	67057	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding
diff_RLAGL_Vector_cond1_5913	chr2	148680898	148681285	+	6.54381	NA	promoter-TSS (NM_028986)	promoter-TSS (NM_028986)	-29	NM_028986	74533	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding
diff_RLAGL_Vector_cond1_6260	chr3	37962194	37962595	+	6.54259	NA	intron (NR_040559, intron 2 of 3)	intron (NR_040559, intron 2 of 3)	63581	NR_040559	626410	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA
diff_RLAGL_Vector_cond1_4251	chr17	11095815	11096098	+	6.54256	NA	intron (NM_016694, intron 2 of 11)	intron (NM_016694, intron 2 of 11)	255572	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding
diff_RLAGL_Vector_cond1_4943	chr18	69925355	69925693	+	6.54209	NA	promoter-TSS (NM_201362)	promoter-TSS (NM_201362)	-35	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding
diff_RLAGL_Vector_cond1_4872	chr18	47475690	47475966	+	6.54119	NA	Intergenic	Intergenic	23160	NR_033453	77668	Mm.98433	NR_033453		9130209A04Rik	-	RIKEN cDNA 9130209A04 gene	ncRNA
diff_RLAGL_Vector_cond1_2265	chr12	58556573	58556859	+	6.54068	NA	Intergenic	URR1A|DNA|hAT-Charlie	-287458	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
diff_RLAGL_Vector_cond1_2422	chr12	106409893	106410132	+	6.54066	NA	Intergenic	Intergenic	37654	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA
diff_RLAGL_Vector_cond1_1623	chr11	43681604	43682049	+	6.54040	NA	promoter-TSS (NM_001164231)	promoter-TSS (NM_001164231)	-172	NM_027557	70802	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding
diff_RLAGL_Vector_cond1_5550	chr2	72254997	72255229	+	6.53965	NA	intron (NM_019688, intron 29 of 29)	intron (NM_019688, intron 29 of 29)	-30524	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Zak	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
diff_RLAGL_Vector_cond1_2093	chr12	14301719	14302188	+	6.53965	NA	Intergenic	Intergenic	40419	NR_045003	791361	Mm.217963	NR_045003		Gm16497	ENSMUSG00000066623	predicted gene 16497	ncRNA
diff_RLAGL_Vector_cond1_5195	chr19	48703878	48704094	+	6.53926	NA	intron (NM_025696, intron 9 of 26)	intron (NM_025696, intron 9 of 26)	497961	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding
diff_RLAGL_Vector_cond1_3666	chr15	67516553	67516786	+	6.53806	NA	Intergenic	Intergenic	289900	NR_045140	69334	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA
diff_RLAGL_Vector_cond1_3301	chr14	101729263	101729794	+	6.53771	NA	promoter-TSS (NM_201529)	promoter-TSS (NM_201529)	-400	NM_201529	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding
diff_RLAGL_Vector_cond1_7560	chr5	18115026	18115255	+	6.53694	NA	Intergenic	Intergenic	152570	NM_001081143	242851	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding
diff_RLAGL_Vector_cond1_5020	chr18	84921729	84921947	+	6.53587	NA	Intergenic	Intergenic	-13187	NM_015798	50764	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding
diff_RLAGL_Vector_cond1_2836	chr13	81385734	81386166	+	6.53566	NA	exon (NM_054053, exon 81 of 90)	exon (NM_054053, exon 81 of 90)	247194	NM_054053	110789	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding
diff_RLAGL_Vector_cond1_5543	chr2	69206134	69206437	+	6.53489	NA	promoter-TSS (NM_025565)	promoter-TSS (NM_025565)	-72	NM_001305800	66442	Mm.272969	NM_025565	ENSMUSG00000005233	Spc25	2600017H08Rik|2610205L13Rik|Spbc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_2770	chr13	67399744	67399993	+	6.53478	NA	promoter-TSS (NM_001080941)	promoter-TSS (NM_001080941)	-101	NM_001080941	72807	Mm.303790	NM_001080941	ENSMUSG00000078994	Zfp429	2810487A22Rik|AI929863|Rsl2	zinc finger protein 429	protein-coding
diff_RLAGL_Vector_cond1_7332	chr4	133660207	133660425	+	6.53398	NA	Intergenic	Intergenic	12331	NM_001145956	230801	Mm.217004	NM_178698		Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding
diff_RLAGL_Vector_cond1_8189	chr6	17307495	17307723	+	6.53324	NA	promoter-TSS (NM_001243064)	promoter-TSS (NM_001243064)	-31	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding
diff_RLAGL_Vector_cond1_9390	chr8	15011148	15011379	+	6.53322	NA	5' UTR (NM_029116, exon 1 of 2)	5' UTR (NM_029116, exon 1 of 2)	238	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding
diff_RLAGL_Vector_cond1_7202	chr4	110351433	110351981	+	6.53317	NA	intron (NM_001163397, intron 1 of 5)	CpG	204	NM_001163397	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding
diff_RLAGL_Vector_cond1_6228	chr3	28579197	28579454	+	6.53286	NA	intron (NM_001163007, intron 12 of 31)	intron (NM_001163007, intron 12 of 31)	-118578	NM_031197	20526	Mm.18443	NM_031197		Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding
diff_RLAGL_Vector_cond1_3110	chr14	46760265	46760496	+	6.53201	NA	promoter-TSS (NM_028222)	promoter-TSS (NM_028222)	-161	NM_028222	72391	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding
diff_RLAGL_Vector_cond1_4306	chr17	21679608	21680272	+	6.53187	NA	Intergenic	Intergenic	-10272	NR_045766	100310809	Mm.293030	NR_045766		Gm10509	ENSMUSG00000073448	zinc finger protein 51 pseudogene	pseudo
diff_RLAGL_Vector_cond1_36	chr1	9564026	9564358	+	6.53163	NA	intron (NM_175236, intron 12 of 13)	intron (NM_175236, intron 12 of 13)	16146	NM_175236	76187	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8	alcohol dehydrogenase, iron containing, 1	protein-coding
diff_RLAGL_Vector_cond1_7865	chr5	102481183	102481650	+	6.53056	NA	promoter-TSS (NM_146161)	promoter-TSS (NM_146161)	25	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
diff_RLAGL_Vector_cond1_6080	chr2	173534572	173534935	+	6.53040	NA	Intergenic	Intergenic	12161	NM_028158	72221	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding
diff_RLAGL_Vector_cond1_2900	chr13	103334442	103334690	+	6.53016	NA	promoter-TSS (NM_175171)	promoter-TSS (NM_175171)	-74	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding
diff_RLAGL_Vector_cond1_5801	chr2	134290302	134290578	+	6.52990	NA	Intergenic	Intergenic	263912	NM_010403	15112	Mm.26634	NM_010403	ENSMUSG00000027261	Hao1	GOX|Gox1|Hao-1	hydroxyacid oxidase 1, liver	protein-coding
diff_RLAGL_Vector_cond1_3738	chr15	84852940	84853143	+	6.52959	NA	intron (NM_001081166, intron 2 of 12)	intron (NM_001081166, intron 2 of 12)	3088	NM_001081166	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding
diff_RLAGL_Vector_cond1_8332	chr6	54763724	54764190	+	6.52874	NA	Intergenic	MLTR18D_MM|LTR|ERVK	-52959	NM_199143	387524	Mm.286149	NM_199143		Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding
diff_RLAGL_Vector_cond1_7767	chr5	67931839	67932438	+	6.52860	NA	Intergenic	Intergenic	-9531	NM_001256184	330097	Mm.78496	NM_001256184	ENSMUSG00000094719	Gm5108	EG330097	predicted gene 5108	protein-coding
diff_RLAGL_Vector_cond1_3327	chr14	105250935	105251300	+	6.52678	NA	Intergenic	MIRc|SINE|MIR	-7556	NM_029561	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_183	chr1	52953150	52953451	+	6.52585	NA	promoter-TSS (NM_144953)	promoter-TSS (NM_144953)	-460	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding
diff_RLAGL_Vector_cond1_6798	chr4	5494664	5495250	+	6.52564	NA	Intergenic	Intergenic	-137371	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA
diff_RLAGL_Vector_cond1_9697	chr8	88454019	88454331	+	6.52545	NA	Intergenic	CpG	-67169	NM_027280	93960	Mm.30219	NM_027280	ENSMUSG00000031661	Nkd1	2810434J10Rik|9030215G15Rik|Nkd	naked cuticle 1 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9813	chr8	119358952	119359163	+	6.52522	NA	Intergenic	Intergenic	14519	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_8109	chr5	148929061	148929264	+	6.52382	NA	promoter-TSS (NM_153572)	promoter-TSS (NM_153572)	-515	NM_153572	231912	Mm.397405	NM_153572		Katnal1	-	katanin p60 subunit A-like 1	protein-coding
diff_RLAGL_Vector_cond1_1874	chr11	99128344	99128664	+	6.52256	NA	Intergenic	Intergenic	26573	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding
diff_RLAGL_Vector_cond1_8584	chr6	117906695	117906949	+	6.52225	NA	promoter-TSS (NM_001166431)	promoter-TSS (NM_001166431)	40	NM_001166431	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding
diff_RLAGL_Vector_cond1_5296	chr2	14279216	14279511	+	6.52096	NA	intron (NM_008625, intron 10 of 29)	RMER15|LTR|ERVL	18360	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA
diff_RLAGL_Vector_cond1_6862	chr4	20041798	20042104	+	6.51973	NA	promoter-TSS (NM_010281)	promoter-TSS (NM_010281)	-101	NM_010281	14590	Mm.20461	NM_010281		Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding
diff_RLAGL_Vector_cond1_3036	chr14	20640830	20641094	+	6.51910	NA	Intergenic	CpG	15578	NM_021508	59011	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding
diff_RLAGL_Vector_cond1_7239	chr4	117357094	117357465	+	6.51870	NA	intron (NM_025739, intron 2 of 14)	intron (NM_025739, intron 2 of 14)	18182	NM_001310729	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding
diff_RLAGL_Vector_cond1_2132	chr12	25378105	25378306	+	6.51674	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	249031	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA
diff_RLAGL_Vector_cond1_395	chr1	105088972	105089472	+	6.51670	NA	Intergenic	Intergenic	267488	NM_178779	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding
diff_RLAGL_Vector_cond1_2907	chr13	105294279	105294569	+	6.51642	NA	Intergenic	CpG	-1410	NM_027934	71816	Mm.317015	NM_027934		Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding
diff_RLAGL_Vector_cond1_5956	chr2	154436086	154436334	+	6.51613	NA	promoter-TSS (NM_172860)	promoter-TSS (NM_172860)	-274	NM_001285446	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding
diff_RLAGL_Vector_cond1_5444	chr2	48465539	48465769	+	6.51585	NA	Intergenic	Intergenic	-348455	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
diff_RLAGL_Vector_cond1_5288	chr2	13522161	13522423	+	6.51379	NA	intron (NM_010067, intron 5 of 10)	intron (NM_010067, intron 5 of 10)	22372	NM_010067	13434	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_374	chr1	95314019	95314377	+	6.51292	NA	exon (NM_026321, exon 1 of 3)	exon (NM_026321, exon 1 of 3)	570	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding
diff_RLAGL_Vector_cond1_9819	chr8	120216862	120217085	+	6.51232	NA	intron (NR_110496, intron 2 of 2)	intron (NR_110496, intron 2 of 2)	11257	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA
diff_RLAGL_Vector_cond1_3069	chr14	30651093	30651314	+	6.51124	NA	Intergenic	Intergenic	-3172	NM_177815	328370	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_332	chr1	87589952	87590202	+	6.51009	NA	intron (NM_001160165, intron 1 of 2)	B4|SINE|B4	-4473	NM_015750	23956	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding
diff_RLAGL_Vector_cond1_8589	chr6	118197230	118197534	+	6.51006	NA	5' UTR (NM_001080780, exon 1 of 19)	5' UTR (NM_001080780, exon 1 of 19)	362	NM_009050	19713	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_8960	chr7	45643525	45643751	+	6.50864	NA	exon (NM_172418, exon 7 of 10)	exon (NM_172418, exon 7 of 10)	3661	NM_172418	74490	Mm.107442	NM_172418		Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding
diff_RLAGL_Vector_cond1_6125	chr2	180171390	180171985	+	6.50775	NA	promoter-TSS (NM_019822)	promoter-TSS (NM_019822)	99	NM_019822	56436	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding
diff_RLAGL_Vector_cond1_8696	chr6	136913467	136913935	+	6.50718	NA	intron (NM_026983, intron 3 of 6)	intron (NM_026983, intron 3 of 6)	8479	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding
diff_RLAGL_Vector_cond1_2950	chr13	115572040	115572325	+	6.50715	NA	Intergenic	L1_Mus4|LINE|L1	-470218	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding
diff_RLAGL_Vector_cond1_6686	chr3	146107978	146108349	+	6.50675	NA	promoter-TSS (NM_172864)	promoter-TSS (NM_172864)	-127	NM_172864	242253	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik	WD repeat domain 63	protein-coding
diff_RLAGL_Vector_cond1_3207	chr14	73173725	73174007	+	6.50609	NA	exon (NM_001170694, exon 11 of 15)	exon (NM_001170694, exon 11 of 15)	31081	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding
diff_RLAGL_Vector_cond1_5054	chr19	5023921	5024360	+	6.50544	NA	5' UTR (NM_007854, exon 1 of 12)	5' UTR (NM_007854, exon 1 of 12)	134	NM_007854	13340	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding
diff_RLAGL_Vector_cond1_6938	chr4	42949655	42949897	+	6.50496	NA	Intergenic	CpG	-3318	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ (Hsp40) homolog, subfamily B, member 5	protein-coding
diff_RLAGL_Vector_cond1_5328	chr2	20689462	20689676	+	6.50476	NA	intron (NM_178059, intron 4 of 18)	intron (NM_178059, intron 4 of 18)	170056	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
diff_RLAGL_Vector_cond1_5995	chr2	161052278	161052541	+	6.50399	NA	non-coding (NR_126509, exon 3 of 36)	non-coding (NR_126509, exon 3 of 36)	56677	NM_173368	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
diff_RLAGL_Vector_cond1_4898	chr18	57786164	57786371	+	6.50347	NA	Intergenic	Intergenic	-92411	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding
diff_RLAGL_Vector_cond1_5282	chr2	12419368	12419575	+	6.50287	NA	promoter-TSS (NM_024185)	promoter-TSS (NM_024185)	-11	NM_024185	66960	Mm.34059	NM_024185	ENSMUSG00000026767	Fam188a	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958	family with sequence similarity 188, member A	protein-coding
diff_RLAGL_Vector_cond1_7881	chr5	103977271	103977546	+	6.50282	NA	promoter-TSS (NM_001163486)	promoter-TSS (NM_001163486)	-20	NM_001163486	243168	Mm.284944	NM_198030	ENSMUSG00000034528	Hsd17b13	AI047820|PAN1B-like|Pan1b	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding
diff_RLAGL_Vector_cond1_6173	chr3	14886160	14886370	+	6.50254	NA	promoter-TSS (NM_009801)	promoter-TSS (NM_009801)	-161	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding
diff_RLAGL_Vector_cond1_3881	chr16	17243793	17244002	+	6.50228	NA	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	10310	NM_178922	58180	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding
diff_RLAGL_Vector_cond1_6595	chr3	127929931	127930427	+	6.50184	NA	intron (NR_040552, intron 3 of 4)	intron (NR_040552, intron 3 of 4)	14008	NR_040552	329753	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA
diff_RLAGL_Vector_cond1_2337	chr12	84193865	84194337	+	6.50165	NA	promoter-TSS (NM_001163502)	promoter-TSS (NM_001163502)	-86	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3860	chr16	10698239	10698453	+	6.50122	NA	intron (NM_001204229, intron 21 of 22)	intron (NM_001204229, intron 21 of 22)	87190	NM_001271603	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding
diff_RLAGL_Vector_cond1_846	chr10	4612358	4612560	+	6.50102	NA	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	470	NM_001302532	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding
diff_RLAGL_Vector_cond1_9722	chr8	94974334	94974584	+	6.50060	NA	Intergenic	Intergenic	-2650	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding
diff_RLAGL_Vector_cond1_3909	chr16	25481328	25481550	+	6.49910	NA	Intergenic	Intergenic	194622	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding
diff_RLAGL_Vector_cond1_786	chr1	189688183	189688507	+	6.49905	NA	promoter-TSS (NM_001081363)	promoter-TSS (NM_001081363)	-259	NM_001081363	108000	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding
diff_RLAGL_Vector_cond1_5058	chr19	5841483	5841787	+	6.49905	NA	TTS (NR_003513)	TTS (NR_003513)	3843	NR_131212	66961	Mm.281895	NR_003513		Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA
diff_RLAGL_Vector_cond1_93	chr1	23922274	23922504	+	6.49898	NA	promoter-TSS (NM_028534)	promoter-TSS (NM_028534)	-8	NM_028534	98366	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding
diff_RLAGL_Vector_cond1_5127	chr19	27217578	27217882	+	6.49890	NA	intron (NM_013703, intron 1 of 18)	CpG	710	NM_013703	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding
diff_RLAGL_Vector_cond1_4756	chr18	15759880	15760294	+	6.49682	NA	Intergenic	CpG	-42041	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
diff_RLAGL_Vector_cond1_1507	chr11	12409569	12409815	+	6.49558	NA	intron (NM_001282993, intron 1 of 13)	intron (NM_001282993, intron 1 of 13)	2448	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
diff_RLAGL_Vector_cond1_10555	chrX	136741200	136741842	+	6.49486	NA	promoter-TSS (NM_001168229)	promoter-TSS (NM_001168229)	88	NM_019768	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding
diff_RLAGL_Vector_cond1_9753	chr8	106337905	106338247	+	6.49484	NA	promoter-TSS (NM_021491)	promoter-TSS (NM_021491)	-88	NM_021491	58994	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding
diff_RLAGL_Vector_cond1_7027	chr4	63625685	63626053	+	6.49453	NA	Intergenic	Intergenic	-3440	NM_029324	75524	Mm.38543	NM_029324	ENSMUSG00000058935	1700018C11Rik	bM230C2.3	RIKEN cDNA 1700018C11 gene	protein-coding
diff_RLAGL_Vector_cond1_7981	chr5	127617079	127617627	+	6.49445	NA	promoter-TSS (NM_133895)	promoter-TSS (NM_133895)	39	NM_133895	100561	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding
diff_RLAGL_Vector_cond1_1456	chr11	4146023	4146624	+	6.49423	NA	exon (NM_177616, exon 10 of 13)	exon (NM_177616, exon 10 of 13)	6959	NR_037220	100526466		NR_037220	ENSMUSG00000093080	Mir3060	mir-3060|mmu-mir-3060	microRNA 3060	ncRNA
diff_RLAGL_Vector_cond1_9800	chr8	116993427	116993660	+	6.49385	NA	promoter-TSS (NM_026572)	promoter-TSS (NM_026572)	-94	NM_026572	68133	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding
diff_RLAGL_Vector_cond1_6770	chr3	157993267	157993719	+	6.49350	NA	intron (NM_001013806, intron 8 of 12)	intron (NM_001013806, intron 8 of 12)	38261	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding
diff_RLAGL_Vector_cond1_4968	chr18	74800960	74801164	+	6.49339	NA	intron (NM_177470, intron 7 of 9)	intron (NM_177470, intron 7 of 9)	21850	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding
diff_RLAGL_Vector_cond1_684	chr1	173418836	173419289	+	6.49301	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-1542	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding
diff_RLAGL_Vector_cond1_3052	chr14	25307127	25307634	+	6.49245	NA	Intergenic	Intergenic	-151805	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding
diff_RLAGL_Vector_cond1_6898	chr4	28998733	28999052	+	6.49209	NA	Intergenic	Intergenic	185747	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
diff_RLAGL_Vector_cond1_4812	chr18	35022385	35022609	+	6.49106	NA	Intergenic	Intergenic	-68146	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding
diff_RLAGL_Vector_cond1_2380	chr12	98920484	98920782	+	6.48690	NA	promoter-TSS (NM_029553)	promoter-TSS (NM_029553)	21	NM_198311	76260	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding
diff_RLAGL_Vector_cond1_6000	chr2	161561543	161561779	+	6.48579	NA	intron (NM_001291149, intron 20 of 30)	(TG)n|Simple_repeat|Simple_repeat	-452575	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
diff_RLAGL_Vector_cond1_6414	chr3	81945000	81945235	+	6.48573	NA	intron (NM_177662, intron 4 of 7)	intron (NM_177662, intron 4 of 7)	12501	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|A430056C07|AI118514	cathepsin O	protein-coding
diff_RLAGL_Vector_cond1_10565	chrX	141721769	141722145	+	6.48489	NA	exon (NM_010572, exon 1 of 2)	exon (NM_010572, exon 1 of 2)	3260	NM_010572	16370	Mm.261591	NM_010572	ENSMUSG00000054667	Irs4	IRS-4	insulin receptor substrate 4	protein-coding
diff_RLAGL_Vector_cond1_8610	chr6	122590996	122591332	+	6.48418	NA	5' UTR (NM_031159, exon 4 of 8)	5' UTR (NM_031159, exon 4 of 8)	11280	NM_001134391	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_6775	chr3	158561691	158562310	+	6.48388	NA	5' UTR (NM_001291452, exon 1 of 27)	5' UTR (NM_001291452, exon 1 of 27)	221	NM_001081358	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding
diff_RLAGL_Vector_cond1_2292	chr12	70794941	70795331	+	6.48388	NA	Intergenic	Intergenic	-30378	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_7591	chr5	24750789	24751110	+	6.48350	NA	TTS (NM_153076)	TTS (NM_153076)	6894	NM_153076	214301	Mm.63484	NM_153076		Crygn	-	crystallin, gamma N	protein-coding
diff_RLAGL_Vector_cond1_9060	chr7	73243190	73243480	+	6.48290	NA	Intergenic	Intergenic	-67045	NR_105062	100505025	Mm.445959	NR_105062		LOC100505025	-	uncharacterized LOC100505025	ncRNA
diff_RLAGL_Vector_cond1_10182	chr9	82974153	82974366	+	6.48244	NA	intron (NM_001081216, intron 4 of 39)	intron (NM_001081216, intron 4 of 39)	1230	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding
diff_RLAGL_Vector_cond1_8691	chr6	135569397	135569606	+	6.48120	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-89412	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA
diff_RLAGL_Vector_cond1_5273	chr2	11429784	11429984	+	6.48064	NA	Intergenic	Intergenic	-31384	NR_040615	77543	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA
diff_RLAGL_Vector_cond1_8633	chr6	127330231	127330722	+	6.48040	NA	Intergenic	Intergenic	-22509	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA
diff_RLAGL_Vector_cond1_493	chr1	133660926	133661134	+	6.48029	NA	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	-145	NM_001166552	667118	Mm.245357	NM_001166552	ENSMUSG00000102049	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding
diff_RLAGL_Vector_cond1_8955	chr7	44929560	44930029	+	6.48020	NA	promoter-TSS (NM_007458)	promoter-TSS (NM_007458)	-304	NM_001077264	11771	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding
diff_RLAGL_Vector_cond1_4800	chr18	31634469	31635165	+	6.47955	NA	intron (NM_172965, intron 1 of 20)	CpG	434	NM_172965	269003	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding
diff_RLAGL_Vector_cond1_2914	chr13	107889979	107890431	+	6.47916	NA	promoter-TSS (NM_145456)	promoter-TSS (NM_145456)	-141	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding
diff_RLAGL_Vector_cond1_7994	chr5	130144647	130145105	+	6.47911	NA	promoter-TSS (NM_172509)	promoter-TSS (NM_172509)	-12	NM_172509	212919	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_7099	chr4	85198506	85198721	+	6.47815	NA	Intergenic	Intergenic	-6843	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding
diff_RLAGL_Vector_cond1_4610	chr17	77193851	77194131	+	6.47770	NA	Intergenic	MER31A|LTR|ERV1	-1006257	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
diff_RLAGL_Vector_cond1_1575	chr11	30471818	30472019	+	6.47545	NA	promoter-TSS (NM_001100394)	promoter-TSS (NM_001100394)	-89	NM_001100394	75087	Mm.159422	NM_001100394	ENSMUSG00000040919	4930505A04Rik	-	RIKEN cDNA 4930505A04 gene	protein-coding
diff_RLAGL_Vector_cond1_667	chr1	170575960	170576314	+	6.47519	NA	intron (NM_001109985, intron 1 of 9)	MamRep605|LTR?|LTR?	13712	NM_001109985	70729	Mm.487078	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding
diff_RLAGL_Vector_cond1_8172	chr6	12748706	12749021	+	6.47479	NA	exon (NM_001164805, exon 1 of 27)	exon (NM_001164805, exon 1 of 27)	390	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
diff_RLAGL_Vector_cond1_8096	chr5	146794834	146795189	+	6.47466	NA	promoter-TSS (NM_011669)	promoter-TSS (NM_011669)	-55	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding
diff_RLAGL_Vector_cond1_7594	chr5	25529540	25529926	+	6.47440	NA	promoter-TSS (NR_027388)	promoter-TSS (NR_027388)	-285	NR_027388	73571	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA
diff_RLAGL_Vector_cond1_2000	chr11	119053314	119053582	+	6.47389	NA	Intergenic	CpG	-12535	NM_013926	30951	Mm.99953	NM_013926		Cbx8	Pc3	chromobox 8	protein-coding
diff_RLAGL_Vector_cond1_6353	chr3	63832548	63832776	+	6.47354	NA	intron (NM_183191, intron 1 of 22)	intron (NM_183191, intron 1 of 22)	18329	NM_001177732	269437	Mm.316391	NM_183191	ENSMUSG00000036834	Plch1	BC042549|PLC-eta-1|PLCeta1|Plcl3	phospholipase C, eta 1	protein-coding
diff_RLAGL_Vector_cond1_9434	chr8	26311132	26311401	+	6.47353	NA	Intergenic	Intergenic	153097	NM_199042	73754	Mm.383241	NM_199042		Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_5741	chr2	119741933	119742167	+	6.47298	NA	promoter-TSS (NM_146125)	promoter-TSS (NM_146125)	-287	NM_146125	228550	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding
diff_RLAGL_Vector_cond1_3339	chr14	106178321	106178533	+	6.47285	NA	Intergenic	Intergenic	72229	NM_198601	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding
diff_RLAGL_Vector_cond1_8985	chr7	52006073	52006576	+	6.47175	NA	promoter-TSS (NM_001160345)	promoter-TSS (NM_001160345)	-306	NM_001160345	75744	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding
diff_RLAGL_Vector_cond1_1219	chr10	86636888	86637408	+	6.47153	NA	Intergenic	Intergenic	-48379	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo
diff_RLAGL_Vector_cond1_8657	chr6	131353613	131353939	+	6.47121	NA	Intergenic	Intergenic	34674	NM_011733	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding
diff_RLAGL_Vector_cond1_3775	chr15	93595177	93596103	+	6.47102	NA	intron (NM_001033217, intron 1 of 7)	CpG	251	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7695	chr5	46578630	46578990	+	6.47037	NA	Intergenic	RLTR49|LTR|ERVK	-646401	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA
diff_RLAGL_Vector_cond1_6565	chr3	121262471	121262682	+	6.47024	NA	intron (NM_178936, intron 1 of 7)	CpG	740	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding
diff_RLAGL_Vector_cond1_7160	chr4	101192344	101192559	+	6.47014	NA	intron (NM_146145, intron 2 of 24)	intron (NM_146145, intron 2 of 24)	72831	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding
diff_RLAGL_Vector_cond1_8314	chr6	50390402	50390706	+	6.46875	NA	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	-7717	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding
diff_RLAGL_Vector_cond1_10407	chrX	18162342	18162644	+	6.46866	NA	promoter-TSS (NM_009483)	promoter-TSS (NM_009483)	-82	NM_009483	22289	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding
diff_RLAGL_Vector_cond1_7352	chr4	134975395	134975595	+	6.46745	NA	Intergenic	Intergenic	44515	NM_026780	68592	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_537	chr1	140409560	140409848	+	6.46729	NA	intron (NM_001081027, intron 8 of 27)	intron (NM_001081027, intron 8 of 27)	163447	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding
diff_RLAGL_Vector_cond1_1747	chr11	74848264	74848513	+	6.46638	NA	TTS (NM_197943)	TTS (NM_197943)	17464	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding
diff_RLAGL_Vector_cond1_4500	chr17	56040064	56040365	+	6.46619	NA	promoter-TSS (NM_013733)	promoter-TSS (NM_013733)	-202	NM_013733	27221	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding
diff_RLAGL_Vector_cond1_4155	chr16	86389022	86389685	+	6.46612	NA	Intergenic	Intergenic	-488228	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding
diff_RLAGL_Vector_cond1_340	chr1	88492070	88492397	+	6.46527	NA	Intergenic	Lx8|LINE|L1	17833	NM_008132	14659	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding
diff_RLAGL_Vector_cond1_1998	chr11	119041055	119041496	+	6.46456	NA	promoter-TSS (NM_013926)	promoter-TSS (NM_013926)	-362	NM_013926	30951	Mm.99953	NM_013926		Cbx8	Pc3	chromobox 8	protein-coding
diff_RLAGL_Vector_cond1_7277	chr4	124709122	124709328	+	6.46418	NA	TTS (NM_010213)	TTS (NM_010213)	-5636	NM_029157	75062	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding
diff_RLAGL_Vector_cond1_8798	chr7	4812779	4813028	+	6.46332	NA	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-563	NM_133777	77891	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding
diff_RLAGL_Vector_cond1_2709	chr13	59904474	59904751	+	6.46240	NA	Intergenic	Intergenic	-81465	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_434	chr1	118459441	118459666	+	6.46191	NA	promoter-TSS (NR_027901)	promoter-TSS (NR_027901)	-288	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA
diff_RLAGL_Vector_cond1_3865	chr16	11203107	11203438	+	6.46103	NA	promoter-TSS (NR_038156)	promoter-TSS (NR_038156)	20	NM_025546	66409	Mm.28291	NM_025546	ENSMUSG00000005846	Rsl1d1	2410005K20Rik|C76439|pBK1	ribosomal L1 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7904	chr5	109557237	109558053	+	6.45970	NA	exon (NM_001310694, exon 2 of 8)	exon (NM_001310694, exon 2 of 8)	1348	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding
diff_RLAGL_Vector_cond1_3289	chr14	100348323	100348529	+	6.45895	NA	Intergenic	Intergenic	-198630	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
diff_RLAGL_Vector_cond1_1729	chr11	70432277	70432841	+	6.45857	NA	promoter-TSS (NM_001271360)	promoter-TSS (NM_001271360)	-21	NM_001271359	216869	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872	arrestin, beta 2	protein-coding
diff_RLAGL_Vector_cond1_2760	chr13	66932656	66933339	+	6.45849	NA	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	75	NM_025547	66410	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding
diff_RLAGL_Vector_cond1_9258	chr7	131002248	131002619	+	6.45781	NA	Intergenic	Intergenic	-29643	NM_007769	12945	Mm.4138	NM_007769	ENSMUSG00000047517	Dmbt1	CRP|CRP-[a]|CRP-[b]|Crpd|DBMT1|gp300|p80	deleted in malignant brain tumors 1	protein-coding
diff_RLAGL_Vector_cond1_4337	chr17	25844503	25844725	+	6.45775	NA	TTS (NM_001163766)	TTS (NM_001163766)	237	NM_145999	214952	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog gene family, member T2	protein-coding
diff_RLAGL_Vector_cond1_3948	chr16	35911486	35911694	+	6.45761	NA	Intergenic	MamRep605|LTR?|LTR?	-26880	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding
diff_RLAGL_Vector_cond1_6423	chr3	83789961	83790251	+	6.45676	NA	Intergenic	Intergenic	23785	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding
diff_RLAGL_Vector_cond1_5991	chr2	160353673	160353881	+	6.45674	NA	Intergenic	Intergenic	13288	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding
diff_RLAGL_Vector_cond1_7022	chr4	63186595	63186803	+	6.45603	NA	Intergenic	Intergenic	-14568	NM_010616	16552	Mm.216057	NM_010616	ENSMUSG00000028357	Kif12	-	kinesin family member 12	protein-coding
diff_RLAGL_Vector_cond1_4328	chr17	24877973	24878191	+	6.45592	NA	promoter-TSS (NM_008340)	promoter-TSS (NM_008340)	-688	NM_008340	16005	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding
diff_RLAGL_Vector_cond1_9446	chr8	31111457	31111831	+	6.45533	NA	promoter-TSS (NM_175136)	promoter-TSS (NM_175136)	-202	NM_175136	68867	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding
diff_RLAGL_Vector_cond1_4737	chr18	8933418	8933624	+	6.45510	NA	Intergenic	Intergenic	-279335	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled homolog 8 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_603	chr1	159231813	159232323	+	6.45422	NA	promoter-TSS (NM_011931)	promoter-TSS (NM_011931)	-258	NM_011931	26374	Mm.328135	NM_011931	ENSMUSG00000040782	Rfwd2	AI316802|C80879|Cop1	ring finger and WD repeat domain 2	protein-coding
diff_RLAGL_Vector_cond1_3554	chr15	44364020	44364370	+	6.45383	NA	Intergenic	Intergenic	-63916	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2238	chr12	52503666	52504049	+	6.45356	NA	Intergenic	CpG	-12220	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding
diff_RLAGL_Vector_cond1_4166	chr16	87861791	87862098	+	6.45330	NA	Intergenic	Intergenic	162990	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1	protein-coding
diff_RLAGL_Vector_cond1_10489	chrX	95026340	95026811	+	6.45259	NA	5' UTR (NM_178753, exon 1 of 1)	5' UTR (NM_178753, exon 1 of 1)	107	NM_178753	270624	Mm.115205	NM_178753	ENSMUSG00000071722	Spin4	9630042H07Rik	spindlin family, member 4	protein-coding
diff_RLAGL_Vector_cond1_6380	chr3	69126924	69127273	+	6.45167	NA	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-6	NM_008467	16649	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding
diff_RLAGL_Vector_cond1_1790	chr11	83298938	83299175	+	6.45153	NA	promoter-TSS (NM_134025)	promoter-TSS (NM_134025)	-79	NM_134025	103737	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding
diff_RLAGL_Vector_cond1_5862	chr2	141343892	141344096	+	6.45128	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-672518	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_9171	chr7	105640193	105640568	+	6.45122	NA	promoter-TSS (NM_019502)	promoter-TSS (NM_019502)	36	NM_029802	76932	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_2103	chr12	16920540	16920809	+	6.45086	NA	intron (NM_009072, intron 1 of 32)	L2a|LINE|L2	25696	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding
diff_RLAGL_Vector_cond1_178	chr1	51509150	51509385	+	6.45020	NA	Intergenic	Intergenic	-30868	NM_001310548	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9138	chr7	97480793	97481005	+	6.44984	NA	promoter-TSS (NM_027256)	promoter-TSS (NM_027256)	-57	NM_027256	101861	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding
diff_RLAGL_Vector_cond1_9185	chr7	109175098	109175326	+	6.44976	NA	promoter-TSS (NM_001302205)	promoter-TSS (NM_001302205)	-5	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding
diff_RLAGL_Vector_cond1_8576	chr6	116264136	116264419	+	6.44960	NA	promoter-TSS (NM_001290338)	promoter-TSS (NM_001290338)	58	NM_001290338	67492	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding
diff_RLAGL_Vector_cond1_4086	chr16	66023252	66023719	+	6.44924	NA	Intergenic	ORR1A1|LTR|ERVL-MaLR	207852	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3513	chr15	31724373	31724597	+	6.44877	NA	Intergenic	Intergenic	122369	NM_026546	68073	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding
diff_RLAGL_Vector_cond1_4795	chr18	30046009	30046243	+	6.44853	NA	Intergenic	Intergenic	-226770	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
diff_RLAGL_Vector_cond1_5540	chr2	68899985	68900195	+	6.44699	NA	intron (NM_172856, intron 1 of 9)	L1MC4|LINE|L1	38533	NM_172856	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding
diff_RLAGL_Vector_cond1_4044	chr16	56871530	56871836	+	6.44609	NA	intron (NM_019631, intron 1 of 5)	intron (NM_019631, intron 1 of 5)	14480	NM_019631	56277	Mm.262328	NM_019631	ENSMUSG00000022754	Tmem45a	C630002M10Rik|M32486|p19.5	transmembrane protein 45a	protein-coding
diff_RLAGL_Vector_cond1_6784	chr4	3130047	3130284	+	6.44587	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-41918	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding
diff_RLAGL_Vector_cond1_8504	chr6	97506291	97506618	+	6.44508	NA	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	111203	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013	FERM domain containing 4B	protein-coding
diff_RLAGL_Vector_cond1_3086	chr14	35095540	35095835	+	6.44242	NA	intron (NM_008166, intron 4 of 15)	intron (NM_008166, intron 4 of 15)	201078	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA
diff_RLAGL_Vector_cond1_1347	chr10	115035897	115036116	+	6.44225	NA	Intergenic	MLTR11B|LTR|ERVK	149016	NM_173391	216343	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding
diff_RLAGL_Vector_cond1_6828	chr4	12171303	12171991	+	6.44194	NA	intron (NM_026558, intron 1 of 7)	CpG	368	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
diff_RLAGL_Vector_cond1_2406	chr12	103469384	103469759	+	6.44189	NA	Intergenic	RLTR13A2|LTR|ERVK	-12348	NM_145449	217845	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding
diff_RLAGL_Vector_cond1_3981	chr16	43889764	43890169	+	6.44184	NA	promoter-TSS (NM_027801)	promoter-TSS (NM_027801)	64	NM_027801	212153	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding
diff_RLAGL_Vector_cond1_4659	chr17	86753190	86754090	+	6.44107	NA	promoter-TSS (NM_010137)	promoter-TSS (NM_010137)	-224	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding
diff_RLAGL_Vector_cond1_778	chr1	187840097	187840305	+	6.44016	NA	intron (NM_001243792, intron 2 of 7)	intron (NM_001243792, intron 2 of 7)	-157626	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding
diff_RLAGL_Vector_cond1_5051	chr19	4793720	4794202	+	6.43985	NA	promoter-TSS (NM_001290125)	promoter-TSS (NM_001290125)	48	NM_001290123	19653	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding
diff_RLAGL_Vector_cond1_9809	chr8	117801839	117802152	+	6.43971	NA	promoter-TSS (NM_026758)	promoter-TSS (NM_026758)	-66	NM_026758	68533	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding
diff_RLAGL_Vector_cond1_125	chr1	34801638	34801928	+	6.43848	NA	promoter-TSS (NM_183019)	promoter-TSS (NM_183019)	61	NM_183019	226970	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef|ENSMUSG00000070955	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding
diff_RLAGL_Vector_cond1_9949	chr9	20952798	20953092	+	6.43759	NA	promoter-TSS (NM_001314011)	promoter-TSS (NM_001314011)	34	NM_010066	13433	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding
diff_RLAGL_Vector_cond1_9086	chr7	79303406	79303635	+	6.43749	NA	intron (NM_018811, intron 3 of 10)	intron (NM_018811, intron 3 of 10)	30254	NM_018811	54608	Mm.365490	NM_018811		Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_8650	chr6	128856338	128856573	+	6.43728	NA	intron (NM_001254946, intron 2 of 2)	RMER17C-int|LTR|ERVK	-30140	NM_030599	80782	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1d	killer cell lectin-like receptor subfamily B member 1B	protein-coding
diff_RLAGL_Vector_cond1_8468	chr6	90428348	90428752	+	6.43717	NA	promoter-TSS (NM_173775)	promoter-TSS (NM_173775)	-70	NM_173775	243538	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding
diff_RLAGL_Vector_cond1_9101	chr7	83347111	83347311	+	6.43707	NA	Intergenic	Intergenic	-237720	NM_177695	233424	Mm.486619	NM_177695		Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding
diff_RLAGL_Vector_cond1_9166	chr7	104647196	104647433	+	6.43667	NA	promoter-TSS (NM_147049)	promoter-TSS (NM_147049)	-9	NM_147049	259051	Mm.223432	NM_147049	ENSMUSG00000070421	Olfr658	MOR34-5	olfactory receptor 658	protein-coding
diff_RLAGL_Vector_cond1_9928	chr9	14676403	14676679	+	6.43565	NA	Intergenic	Intergenic	-61541	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding
diff_RLAGL_Vector_cond1_4043	chr16	56717152	56717688	+	6.43560	NA	promoter-TSS (NM_001252443)	promoter-TSS (NM_001252443)	30	NM_001252443	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding
diff_RLAGL_Vector_cond1_2871	chr13	91370868	91371230	+	6.43462	NA	non-coding (NR_045161, exon 3 of 3)	non-coding (NR_045161, exon 3 of 3)	17036	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA
diff_RLAGL_Vector_cond1_6902	chr4	29304009	29304386	+	6.43395	NA	Intergenic	Intergenic	491052	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
diff_RLAGL_Vector_cond1_3119	chr14	49171303	49171572	+	6.43391	NA	promoter-TSS (NM_027492)	promoter-TSS (NM_027492)	-809	NM_027492	70646	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding
diff_RLAGL_Vector_cond1_3025	chr14	18541522	18541897	+	6.43387	NA	Intergenic	MMERVK9E_I-int|LTR|ERVK	-209865	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding
diff_RLAGL_Vector_cond1_814	chr1	192682253	192682591	+	6.43328	NA	intron (NM_144881, intron 8 of 11)	intron (NM_144881, intron 8 of 11)	88797	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding
diff_RLAGL_Vector_cond1_8919	chr7	38084679	38085366	+	6.43241	NA	Intergenic	CpG	22468	NM_007633	12447	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding
diff_RLAGL_Vector_cond1_3067	chr14	29443256	29443560	+	6.43239	NA	intron (NM_009785, intron 4 of 37)	intron (NM_009785, intron 4 of 37)	278456	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding
diff_RLAGL_Vector_cond1_9971	chr9	24752167	24752395	+	6.43175	NA	intron (NM_194263, intron 5 of 7)	intron (NM_194263, intron 5 of 7)	22022	NM_194263	57246	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding
diff_RLAGL_Vector_cond1_4709	chr18	3280718	3281217	+	6.43119	NA	5' UTR (NM_001311067, exon 1 of 4)	5' UTR (NM_001311067, exon 1 of 4)	165	NM_001311066	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding
diff_RLAGL_Vector_cond1_3698	chr15	75969037	75969266	+	6.43047	NA	promoter-TSS (NM_001081065)	promoter-TSS (NM_001081065)	-34	NM_001081065	69020	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding
diff_RLAGL_Vector_cond1_6193	chr3	19894649	19894913	+	6.43033	NA	promoter-TSS (NR_027985)	promoter-TSS (NR_027985)	-90	NR_027985	70808	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo
diff_RLAGL_Vector_cond1_1589	chr11	32000314	32000531	+	6.43021	NA	promoter-TSS (NM_008741)	promoter-TSS (NM_008741)	3	NM_008741	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding
diff_RLAGL_Vector_cond1_7971	chr5	122951607	122951811	+	6.43016	NA	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	37390	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding
diff_RLAGL_Vector_cond1_4367	chr17	31892828	31893048	+	6.43012	NA	Intergenic	Intergenic	-37146	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding
diff_RLAGL_Vector_cond1_1924	chr11	109097855	109098228	+	6.43007	NA	Intergenic	Intergenic	46328	NR_037978	268498	Mm.227970	NM_001085512	ENSMUSG00000078605	E030025P04Rik	Gm664	RIKEN cDNA E030025P04 gene	ncRNA
diff_RLAGL_Vector_cond1_6091	chr2	174442507	174442767	+	6.42978	NA	Intergenic	Intergenic	-3598	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding
diff_RLAGL_Vector_cond1_9295	chr7	138375535	138375836	+	6.42789	NA	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	22045	NM_183289	70571	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding
diff_RLAGL_Vector_cond1_1663	chr11	54955869	54956148	+	6.42703	NA	intron (NM_001271455, intron 1 of 17)	CpG	6932	NM_001199275	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_2692	chr13	56152984	56153229	+	6.42643	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-17556	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding
diff_RLAGL_Vector_cond1_4914	chr18	62948155	62948360	+	6.42335	NA	intron (NM_133237, intron 3 of 4)	intron (NM_133237, intron 3 of 4)	25930	NM_133237	494504	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding
diff_RLAGL_Vector_cond1_3819	chr15	100747691	100747891	+	6.42289	NA	Intergenic	Intergenic	-13956	NM_021530	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding
diff_RLAGL_Vector_cond1_1391	chr10	121350770	121351096	+	6.42276	NA	Intergenic	Intergenic	-14157	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding
diff_RLAGL_Vector_cond1_3204	chr14	72293650	72293956	+	6.42239	NA	Intergenic	Intergenic	416200	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding
diff_RLAGL_Vector_cond1_6692	chr3	146450298	146450586	+	6.42193	NA	promoter-TSS (NM_028836)	promoter-TSS (NM_028836)	-25	NM_001293672	74245	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding
diff_RLAGL_Vector_cond1_10353	chr9	120539791	120540004	+	6.42096	NA	promoter-TSS (NM_178676)	promoter-TSS (NM_178676)	79	NM_178676	215446	Mm.76648	NM_178676	ENSMUSG00000041608	Entpd3	Cd39l3|HB6|NTPDase-3	ectonucleoside triphosphate diphosphohydrolase 3	protein-coding
diff_RLAGL_Vector_cond1_4343	chr17	26716204	26716407	+	6.42042	NA	intron (NM_029870, intron 1 of 8)	CpG	655	NM_029870	77128	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding
diff_RLAGL_Vector_cond1_3008	chr14	14294306	14294863	+	6.42009	NA	Intergenic	MuRRS-int|LTR|ERV1	-33529	NM_147027	18330	Mm.484338	NM_147027	ENSMUSG00000072707	Olfr31	MOR274-1|MTPCR53	olfactory receptor 31	protein-coding
diff_RLAGL_Vector_cond1_115	chr1	31364047	31364297	+	6.41957	NA	Intergenic	Intergenic	99325	NR_015347	226957	Mm.25966	NR_015347		Gm4850	EG226957	THO complex 4 pseudogene	pseudo
diff_RLAGL_Vector_cond1_2033	chr12	3153817	3154349	+	6.41879	NA	Intergenic	Intergenic	-81708	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_6118	chr2	179442252	179443047	+	6.41695	NA	exon (NM_001316723, exon 1 of 6)	exon (NM_001316723, exon 1 of 6)	218	NM_001316723	12561	Mm.184711	NM_009867	ENSMUSG00000000305	Cdh4	AW120700|R-CAD|R-Cadh|Rcad	cadherin 4	protein-coding
diff_RLAGL_Vector_cond1_9242	chr7	127895430	127895848	+	6.41681	NA	promoter-TSS (NM_178600)	promoter-TSS (NM_178600)	-22	NM_178600	27973	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding
diff_RLAGL_Vector_cond1_6912	chr4	33248587	33248856	+	6.41593	NA	promoter-TSS (NM_001033225)	promoter-TSS (NM_001033225)	66	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding
diff_RLAGL_Vector_cond1_7851	chr5	99128621	99129028	+	6.41586	NA	Intergenic	Intergenic	-91745	NM_008926	19092	Mm.263002	NM_008926	ENSMUSG00000029334	Prkg2	AW212535|CGKII|Prkgr2|cGK-II	protein kinase, cGMP-dependent, type II	protein-coding
diff_RLAGL_Vector_cond1_6588	chr3	127123299	127123789	+	6.41570	NA	Intergenic	Intergenic	-37761	NR_105030	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA
diff_RLAGL_Vector_cond1_2410	chr12	104008772	104009013	+	6.41544	NA	exon (NM_027997, exon 2 of 5)	exon (NM_027997, exon 2 of 5)	4760	NM_027997	71907	Mm.326723	NM_027997		Serpina9	2310014L03Rik|AW049635|Centerin	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	protein-coding
diff_RLAGL_Vector_cond1_6158	chr3	9520567	9520781	+	6.41432	NA	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	89411	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding
diff_RLAGL_Vector_cond1_5011	chr18	82849346	82849718	+	6.41412	NA	Intergenic	Intergenic	-6365	NR_125720	73985	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA
diff_RLAGL_Vector_cond1_8140	chr6	5110459	5110727	+	6.41358	NA	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	83353	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding
diff_RLAGL_Vector_cond1_9679	chr8	84722980	84723247	+	6.41335	NA	intron (NM_001297601, intron 6 of 8)	intron (NM_001297601, intron 6 of 8)	21656	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding
diff_RLAGL_Vector_cond1_3039	chr14	21500340	21500710	+	6.41310	NA	intron (NM_017479, intron 1 of 16)	CpG	740	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
diff_RLAGL_Vector_cond1_8966	chr7	47015657	47015965	+	6.41232	NA	Intergenic	LTR41|LTR|ERVL	-7397	NM_175318	101685	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_2127	chr12	24890241	24890462	+	6.41123	NA	intron (NM_001083341, intron 3 of 11)	intron (NM_001083341, intron 3 of 11)	58752	NM_001083341	67216	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_4235	chr17	4908005	4908213	+	6.41050	NA	Intergenic	CpG	-86965	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding
diff_RLAGL_Vector_cond1_1289	chr10	103367547	103368237	+	6.40939	NA	promoter-TSS (NM_001252330)	promoter-TSS (NM_001252330)	84	NM_175328	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding
diff_RLAGL_Vector_cond1_739	chr1	180783098	180783297	+	6.40914	NA	Intergenic	Intergenic	30408	NM_008210	15078	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	H3.3A	H3 histone, family 3A	protein-coding
diff_RLAGL_Vector_cond1_5395	chr2	32694037	32694426	+	6.40824	NA	promoter-TSS (NM_010236)	promoter-TSS (NM_010236)	-56	NM_010236	14287	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding
diff_RLAGL_Vector_cond1_4725	chr18	7001524	7002050	+	6.40765	NA	intron (NM_177595, intron 2 of 6)	intron (NM_177595, intron 2 of 6)	2992	NM_177595	210719	Mm.257186	NM_177595	ENSMUSG00000061013	Mkx	9430023B20Rik|Irxl1	mohawk homeobox	protein-coding
diff_RLAGL_Vector_cond1_7161	chr4	101291932	101292165	+	6.40730	NA	Intergenic	Intergenic	-26766	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding
diff_RLAGL_Vector_cond1_2056	chr12	8500016	8500223	+	6.40617	NA	promoter-TSS (NM_007483)	promoter-TSS (NM_007483)	-134	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog gene family, member B	protein-coding
diff_RLAGL_Vector_cond1_4495	chr17	55869349	55869551	+	6.40503	NA	intron (NM_144546, intron 1 of 3)	RLTR22_Mur|LTR|ERVK	9503	NM_144546	104349	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding
diff_RLAGL_Vector_cond1_3480	chr15	17088732	17088946	+	6.40340	NA	Intergenic	RLTR9E|LTR|ERVK	310738	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
diff_RLAGL_Vector_cond1_120	chr1	33814090	33814806	+	6.40257	NA	5' UTR (NM_133817, exon 1 of 15)	5' UTR (NM_133817, exon 1 of 15)	147	NM_001290699	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding
diff_RLAGL_Vector_cond1_3283	chr14	99624555	99624887	+	6.40248	NA	Intergenic	Intergenic	326030	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding
diff_RLAGL_Vector_cond1_9391	chr8	15026670	15027036	+	6.40242	NA	5' UTR (NM_029116, exon 2 of 2)	5' UTR (NM_029116, exon 2 of 2)	15828	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding
diff_RLAGL_Vector_cond1_105	chr1	25830046	25830315	+	6.40228	NA	promoter-TSS (NM_175642)	promoter-TSS (NM_175642)	-473	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
diff_RLAGL_Vector_cond1_7813	chr5	85772137	85772343	+	6.40218	NA	Intergenic	Intergenic	293343	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
diff_RLAGL_Vector_cond1_6340	chr3	61002228	61002864	+	6.40201	NA	promoter-TSS (NM_008772)	promoter-TSS (NM_008772)	-239	NM_001282016	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding
diff_RLAGL_Vector_cond1_7491	chr4	155238446	155238712	+	6.40152	NA	Intergenic	Intergenic	-11387	NR_033802	67513	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding
diff_RLAGL_Vector_cond1_6959	chr4	47650000	47650287	+	6.40097	NA	Intergenic	Intergenic	175482	NM_024171	66212	Mm.20188	NM_024171	ENSMUSG00000053317	Sec61b	1190006C12Rik|AI326121|AW122942	Sec61 beta subunit	protein-coding
diff_RLAGL_Vector_cond1_5287	chr2	13271282	13271839	+	6.40041	NA	promoter-TSS (NM_009105)	promoter-TSS (NM_009105)	-145	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding
diff_RLAGL_Vector_cond1_5266	chr2	9804390	9804884	+	6.39861	NA	Intergenic	Intergenic	73963	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_3411	chr15	3979150	3979361	+	6.39632	NA	exon (NM_134099, exon 1 of 7)	exon (NM_134099, exon 1 of 7)	318	NM_134099	106052	Mm.234191	NM_134099		Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding
diff_RLAGL_Vector_cond1_864	chr10	7681055	7681310	+	6.39621	NA	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	-24	NR_033219	407824	Mm.393120	NR_033219		BC020402	-	cDNA sequence BC020402	ncRNA
diff_RLAGL_Vector_cond1_8572	chr6	115522774	115523118	+	6.39544	NA	Intergenic	Intergenic	-21758	NM_199033	381802	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease 2 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_362	chr1	92180294	92181044	+	6.39541	NA	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-328	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding
diff_RLAGL_Vector_cond1_1977	chr11	117285277	117285476	+	6.39373	NA	intron (NM_001113487, intron 1 of 10)	intron (NM_001113487, intron 1 of 10)	19130	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding
diff_RLAGL_Vector_cond1_2639	chr13	37131577	37131815	+	6.39257	NA	Intergenic	Intergenic	-81452	NM_001166391	74145	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding
diff_RLAGL_Vector_cond1_2495	chr12	118451647	118451855	+	6.39146	NA	Intergenic	Intergenic	78442	NR_045947	100384890	Mm.484658	NR_045947		D230030E09Rik	Npe	Riken cDNA D230030E09 gene	ncRNA
diff_RLAGL_Vector_cond1_2606	chr13	28115938	28116224	+	6.39084	NA	Intergenic	RLTR13B3|LTR|ERVK	-26403	NM_023746	28078	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding
diff_RLAGL_Vector_cond1_2715	chr13	60319370	60319814	+	6.39058	NA	Intergenic	Intergenic	114121	NR_036449	100503759	Mm.38101	NM_177810		Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA
diff_RLAGL_Vector_cond1_8432	chr6	83831726	83832191	+	6.39056	NA	promoter-TSS (NM_146169)	promoter-TSS (NM_146169)	-217	NM_146169	232164	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding
diff_RLAGL_Vector_cond1_10005	chr9	35210878	35211163	+	6.38711	NA	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	35	NM_001291449	235169	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2736	chr13	62733361	62733639	+	6.38635	NA	Intergenic	Intergenic	-27239	NR_030493	751548		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA
diff_RLAGL_Vector_cond1_3821	chr15	101145468	101145840	+	6.38592	NA	TTS (NM_001277255)	TTS (NM_001277255)	17132	NM_001277259	11482	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding
diff_RLAGL_Vector_cond1_2150	chr12	30855598	30855843	+	6.38503	NA	Intergenic	L1M4|LINE|L1	-28604	NM_001159743	100294583	Mm.399726	NM_001159743	ENSMUSG00000054204	Fam150b	6230419C23Rik	family with sequence similarity 150, member B	protein-coding
diff_RLAGL_Vector_cond1_8056	chr5	138280029	138280316	+	6.38482	NA	promoter-TSS (NM_016964)	promoter-TSS (NM_016964)	-235	NM_172412	71951	Mm.77066	NM_172412	ENSMUSG00000029510	Gpc2	2410016G05Rik	glypican 2 (cerebroglycan)	protein-coding
diff_RLAGL_Vector_cond1_5084	chr19	10976332	10976581	+	6.38145	NA	Intergenic	Intergenic	-1786	NM_023529	69826	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding
diff_RLAGL_Vector_cond1_1503	chr11	11788480	11788950	+	6.38028	NA	Intergenic	Intergenic	20247	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding
diff_RLAGL_Vector_cond1_7301	chr4	128811539	128811873	+	6.37976	NA	Intergenic	Intergenic	-5594	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding
diff_RLAGL_Vector_cond1_4146	chr16	81757075	81757394	+	6.37919	NA	Intergenic	RLTR26B_MM|LTR|ERVK	556537	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_1576	chr11	30771614	30771846	+	6.37788	NA	promoter-TSS (NM_134013)	promoter-TSS (NM_134013)	-45	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding
diff_RLAGL_Vector_cond1_19	chr1	6973739	6974222	+	6.37774	NA	Intergenic	Intergenic	-114940	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2854	chr13	86422599	86422922	+	6.37712	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-375965	NM_007749	12867	Mm.378898	NM_007749		Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding
diff_RLAGL_Vector_cond1_5818	chr2	136532026	136532391	+	6.37626	NA	promoter-TSS (NM_175667)	promoter-TSS (NM_175667)	-113	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2319	chr12	78109995	78110287	+	6.37555	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-116514	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding
diff_RLAGL_Vector_cond1_4658	chr17	86732064	86732324	+	6.37417	NA	Intergenic	Intergenic	-21670	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding
diff_RLAGL_Vector_cond1_2693	chr13	56295904	56296251	+	6.37364	NA	intron (NM_019568, intron 1 of 3)	CpG	474	NM_019568	57266	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding
diff_RLAGL_Vector_cond1_3569	chr15	47633442	47633748	+	6.37342	NA	intron (NM_001081391, intron 58 of 70)	intron (NM_001081391, intron 58 of 70)	1010290	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA
diff_RLAGL_Vector_cond1_7091	chr4	83798728	83799375	+	6.37290	NA	intron (NM_001081012, intron 24 of 25)	intron (NM_001081012, intron 24 of 25)	245828	NR_130998	78238	Mm.243903	NR_130998		6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA
diff_RLAGL_Vector_cond1_3682	chr15	73117877	73118404	+	6.37278	NA	intron (NM_153178, intron 13 of 18)	intron (NM_153178, intron 13 of 18)	27728	NM_053068	93696	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding
diff_RLAGL_Vector_cond1_5042	chr18	90551615	90551817	+	6.37117	NA	Intergenic	Intergenic	41562	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_5709	chr2	113327527	113327884	+	6.36887	NA	promoter-TSS (NM_010230)	promoter-TSS (NM_010230)	-31	NM_010230	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|ld	formin 1	protein-coding
diff_RLAGL_Vector_cond1_5738	chr2	118926372	118926747	+	6.36878	NA	promoter-TSS (NM_028117)	promoter-TSS (NM_028117)	62	NM_028117	72136	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding
diff_RLAGL_Vector_cond1_1339	chr10	111858438	111858746	+	6.36853	NA	non-coding (NR_046029, exon 4 of 6)	non-coding (NR_046029, exon 4 of 6)	15784	NR_046029	629206	Mm.391444	NR_046029		Gm20758	-	predicted gene, 20758	ncRNA
diff_RLAGL_Vector_cond1_3265	chr14	87415791	87416059	+	6.36841	NA	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-658	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_6748	chr3	154696620	154696963	+	6.36806	NA	Intergenic	Intergenic	-14342	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
diff_RLAGL_Vector_cond1_5960	chr2	154791159	154791397	+	6.36693	NA	5' UTR (NM_023130, exon 1 of 9)	5' UTR (NM_023130, exon 1 of 9)	168	NM_001139512	19383	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding
diff_RLAGL_Vector_cond1_8801	chr7	6156155	6156402	+	6.36656	NA	promoter-TSS (NM_001013012)	promoter-TSS (NM_001013012)	-307	NM_001013012	67109	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding
diff_RLAGL_Vector_cond1_3792	chr15	95880559	95880927	+	6.36524	NA	intron (NM_001253813, intron 3 of 20)	intron (NM_001253813, intron 3 of 20)	89900	NM_175344	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding
diff_RLAGL_Vector_cond1_2963	chr13	117594576	117594870	+	6.36516	NA	Intergenic	Intergenic	-7597	NM_010408	15165	Mm.343429	NM_010408		Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding
diff_RLAGL_Vector_cond1_4951	chr18	70911013	70911277	+	6.36505	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	342853	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding
diff_RLAGL_Vector_cond1_6061	chr2	171736458	171736716	+	6.36341	NA	Intergenic	Intergenic	226212	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA
diff_RLAGL_Vector_cond1_1034	chr10	51677642	51678041	+	6.36275	NA	promoter-TSS (NM_001159389)	promoter-TSS (NM_001159389)	81	NM_001159389	320995	Mm.109190	NM_177306	ENSMUSG00000019900	Rfx6	4930572O07Rik|Rfxdc1	regulatory factor X, 6	protein-coding
diff_RLAGL_Vector_cond1_7199	chr4	109666874	109667174	+	6.36265	NA	promoter-TSS (NM_001301368)	promoter-TSS (NM_001301368)	-268	NM_001301368	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding
diff_RLAGL_Vector_cond1_6355	chr3	63893737	63893957	+	6.36173	NA	Intergenic	Intergenic	35538	NM_177856	329659	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding
diff_RLAGL_Vector_cond1_10088	chr9	54916921	54917322	+	6.36173	NA	promoter-TSS (NM_177351)	promoter-TSS (NM_177351)	-169	NM_177351	235386	Mm.259334	NM_177351	ENSMUSG00000035878	Hykk	Agphd1|C630028N24Rik	hydroxylysine kinase 1	protein-coding
diff_RLAGL_Vector_cond1_5789	chr2	131726558	131726837	+	6.36151	NA	Intergenic	Intergenic	120959	NR_029381	414081	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA
diff_RLAGL_Vector_cond1_6910	chr4	32615023	32615433	+	6.36147	NA	promoter-TSS (NM_001122978)	promoter-TSS (NM_001122978)	-245	NM_011997	26885	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	AA387232|D4Ertd659e|FLASH|mKIAA1315	caspase 8 associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_7565	chr5	19226395	19226875	+	6.36117	NA	promoter-TSS (NM_001170746)	promoter-TSS (NM_001170746)	-80	NR_102341	70832	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA
diff_RLAGL_Vector_cond1_9173	chr7	105651277	105651496	+	6.36072	NA	Intergenic	Intergenic	10846	NM_019502	14356	Mm.220330	NM_019502		Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding
diff_RLAGL_Vector_cond1_8909	chr7	35056398	35056740	+	6.36007	NA	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-3	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding
diff_RLAGL_Vector_cond1_3490	chr15	25758570	25759166	+	6.35963	NA	intron (NM_019472, intron 19 of 40)	intron (NM_019472, intron 19 of 40)	-84430	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding
diff_RLAGL_Vector_cond1_2044	chr12	5266747	5267026	+	6.35876	NA	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	108796	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding
diff_RLAGL_Vector_cond1_3457	chr15	10215892	10216146	+	6.35819	NA	intron (NM_011169, intron 1 of 9)	intron (NM_011169, intron 1 of 9)	-7887	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding
diff_RLAGL_Vector_cond1_1794	chr11	84522586	84522917	+	6.35775	NA	intron (NM_008498, intron 1 of 4)	CpG	2783	NM_008498	16869	Mm.4965	NM_008498		Lhx1	Lim1	LIM homeobox protein 1	protein-coding
diff_RLAGL_Vector_cond1_9967	chr9	23152001	23152389	+	6.35771	NA	Intergenic	Intergenic	-70881	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding
diff_RLAGL_Vector_cond1_2201	chr12	40917538	40917805	+	6.35737	NA	Intergenic	Intergenic	-106419	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1113	chr10	71159127	71159440	+	6.35718	NA	intron (NM_031397, intron 1 of 20)	CpG	351	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	bicaudal C homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3471	chr15	12504026	12504268	+	6.35712	NA	intron (NM_001081064, intron 1 of 23)	intron (NM_001081064, intron 1 of 23)	88409	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_7657	chr5	38850155	38850354	+	6.35680	NA	intron (NM_013748, intron 2 of 18)	intron (NM_013748, intron 2 of 18)	26439	NM_013748	27278	Mm.440845	NM_013748	ENSMUSG00000039315	Clnk	MIST	cytokine-dependent hematopoietic cell linker	protein-coding
diff_RLAGL_Vector_cond1_5827	chr2	136952077	136952469	+	6.35616	NA	intron (NM_028201, intron 2 of 5)	intron (NM_028201, intron 2 of 5)	52922	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_8703	chr6	137611952	137612389	+	6.35610	NA	intron (NM_007945, intron 1 of 21)	intron (NM_007945, intron 1 of 21)	37115	NM_001271588	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding
diff_RLAGL_Vector_cond1_9162	chr7	104244318	104244705	+	6.35595	NA	promoter-TSS (NM_030684)	promoter-TSS (NM_030684)	54	NM_030684	94094	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding
diff_RLAGL_Vector_cond1_7957	chr5	118488986	118489319	+	6.35590	NA	Intergenic	Intergenic	-71567	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding
diff_RLAGL_Vector_cond1_8269	chr6	37870374	37870715	+	6.35557	NA	promoter-TSS (NM_001272064)	promoter-TSS (NM_001272064)	-267	NM_145076	21848	Mm.41063	NM_145076		Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding
diff_RLAGL_Vector_cond1_1509	chr11	12532455	12532748	+	6.35536	NA	Intergenic	Intergenic	-67641	NM_172496	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
diff_RLAGL_Vector_cond1_2520	chr13	4609110	4609321	+	6.35525	NA	promoter-TSS (NM_018859)	promoter-TSS (NM_018859)	-51	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding
diff_RLAGL_Vector_cond1_6956	chr4	46870242	46870550	+	6.35506	NA	intron (NM_001081141, intron 2 of 18)	intron (NM_001081141, intron 2 of 18)	121318	NM_001081141	242425	Mm.101909	NM_001081141		Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding
diff_RLAGL_Vector_cond1_315	chr1	84284401	84284722	+	6.35488	NA	promoter-TSS (NM_001003948)	promoter-TSS (NM_001003948)	84	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3555	chr15	44408130	44408344	+	6.35472	NA	intron (NM_001113554, intron 2 of 9)	MER90|LTR|ERV1	-19874	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9918	chr9	13826920	13827265	+	6.35205	NA	promoter-TSS (NM_026665)	promoter-TSS (NM_026665)	15	NM_001310721	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding
diff_RLAGL_Vector_cond1_5371	chr2	29802558	29802758	+	6.35181	NA	promoter-TSS (NM_011989)	promoter-TSS (NM_011989)	-22	NM_011989	26569	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding
diff_RLAGL_Vector_cond1_9046	chr7	70565098	70565304	+	6.35078	NA	Intergenic	Intergenic	-198455	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding
diff_RLAGL_Vector_cond1_10410	chrX	20425437	20425820	+	6.35055	NA	promoter-TSS (NM_199317)	promoter-TSS (NM_199317)	-60	NM_199317	382207	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding
diff_RLAGL_Vector_cond1_6327	chr3	58372446	58372996	+	6.35038	NA	Intergenic	Intergenic	-42968	NM_001081229	72033	Mm.218409	NM_028067	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding
diff_RLAGL_Vector_cond1_10291	chr9	108094188	108094636	+	6.34988	NA	promoter-TSS (NM_146226)	promoter-TSS (NM_146226)	68	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding
diff_RLAGL_Vector_cond1_2951	chr13	115799422	115799660	+	6.34947	NA	Intergenic	Intergenic	510147	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding
diff_RLAGL_Vector_cond1_6851	chr4	16163085	16163795	+	6.34779	NA	promoter-TSS (NM_138952)	promoter-TSS (NM_138952)	58	NM_138952	192656	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding
diff_RLAGL_Vector_cond1_10394	chrX	8176004	8176256	+	6.34665	NA	promoter-TSS (NM_172478)	promoter-TSS (NM_172478)	51	NM_001166437	209815	Mm.122963	NM_172478	ENSMUSG00000039201	Tbc1d25	6330576A08Rik|DXHXS7927e|Oatl1	TBC1 domain family, member 25	protein-coding
diff_RLAGL_Vector_cond1_9872	chr8	129233901	129234753	+	6.34416	NA	promoter-TSS (NM_153780)	promoter-TSS (NM_153780)	-281	NM_153780	72139	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding
diff_RLAGL_Vector_cond1_4195	chr16	91921414	91921737	+	6.34305	NA	TTS (NM_010587)	TTS (NM_010587)	10055	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
diff_RLAGL_Vector_cond1_1218	chr10	86520034	86520263	+	6.34255	NA	Intergenic	Intergenic	-21252	NM_013722	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding
diff_RLAGL_Vector_cond1_8890	chr7	28832246	28832524	+	6.34123	NA	TTS (NM_016772)	TTS (NM_016772)	-1409	NM_010706	16855	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding
diff_RLAGL_Vector_cond1_6238	chr3	33799951	33800484	+	6.34108	NA	promoter-TSS (NM_001290500)	promoter-TSS (NM_001290500)	34	NM_027619	67120	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding
diff_RLAGL_Vector_cond1_1591	chr11	32454987	32455504	+	6.34073	NA	promoter-TSS (NM_173784)	promoter-TSS (NM_173784)	-127	NM_173784	327900	Mm.260956	NM_173784		Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_9923	chr9	14275909	14276678	+	6.34069	NA	promoter-TSS (NM_030261)	promoter-TSS (NM_030261)	-8	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding
diff_RLAGL_Vector_cond1_4527	chr17	62882771	62883366	+	6.34064	NA	Intergenic	Intergenic	-1751	NM_010109	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
diff_RLAGL_Vector_cond1_8057	chr5	138742246	138742705	+	6.33967	NA	Intergenic	Intergenic	-12606	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding
diff_RLAGL_Vector_cond1_9694	chr8	88138192	88138426	+	6.33841	NA	TTS (NR_106039)	TTS (NR_106039)	103	NR_106039	102465649		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA
diff_RLAGL_Vector_cond1_7478	chr4	153957052	153957385	+	6.33800	NA	promoter-TSS (NM_001163019)	promoter-TSS (NM_001163019)	-19	NM_175287	97159	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding
diff_RLAGL_Vector_cond1_5680	chr2	106855673	106856217	+	6.33715	NA	intron (NM_029837, intron 4 of 6)	intron (NM_029837, intron 4 of 6)	114446	NM_173750	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding
diff_RLAGL_Vector_cond1_2029	chr11	121717765	121717982	+	6.33480	NA	TTS (NM_144797)	TTS (NM_144797)	15446	NM_144797	210029	Mm.153566	NM_144797		Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding
diff_RLAGL_Vector_cond1_5499	chr2	60713876	60714097	+	6.33381	NA	intron (NM_001159564, intron 1 of 17)	intron (NM_001159564, intron 1 of 17)	8617	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding
diff_RLAGL_Vector_cond1_5522	chr2	65237697	65238418	+	6.33299	NA	intron (NM_177025, intron 1 of 13)	intron (NM_177025, intron 1 of 13)	569	NM_027225	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding
diff_RLAGL_Vector_cond1_210	chr1	63004945	63005308	+	6.33288	NA	Intergenic	Intergenic	109141	NM_001114609	227195	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584|OTTMUSG00000002594	INO80 complex subunit D	protein-coding
diff_RLAGL_Vector_cond1_10336	chr9	118590314	118590529	+	6.33267	NA	Intergenic	Intergenic	-16288	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding
diff_RLAGL_Vector_cond1_2820	chr13	74807844	74808085	+	6.33154	NA	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	-4	NM_009817	12380	Mm.29163	NM_009817		Cast	-	calpastatin	protein-coding
diff_RLAGL_Vector_cond1_910	chr10	18506371	18506795	+	6.33024	NA	intron (NM_001163592, intron 3 of 7)	intron (NM_001163592, intron 3 of 7)	36602	NM_001163592	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding
diff_RLAGL_Vector_cond1_998	chr10	38153807	38154043	+	6.33013	NA	Intergenic	L2b|LINE|L2	-21849	NR_131035	75877	Mm.402094	NR_131035		4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA
diff_RLAGL_Vector_cond1_5264	chr2	9753802	9754032	+	6.32915	NA	Intergenic	Intergenic	124683	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_5595	chr2	84519693	84519892	+	6.32761	NA	Intergenic	Intergenic	-12919	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA
diff_RLAGL_Vector_cond1_4315	chr17	22314660	22314949	+	6.32752	NA	Intergenic	Intergenic	46596	NM_176962	319615	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding
diff_RLAGL_Vector_cond1_9512	chr8	46210935	46211209	+	6.32734	NA	promoter-TSS (NM_007450)	promoter-TSS (NM_007450)	-63	NM_007450	11739	Mm.16228	NM_007450		Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding
diff_RLAGL_Vector_cond1_1105	chr10	69872324	69872836	+	6.32713	NA	intron (NM_170690, intron 10 of 41)	intron (NM_170690, intron 10 of 41)	-52952	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
diff_RLAGL_Vector_cond1_10160	chr9	74706305	74706507	+	6.32698	NA	Intergenic	Intergenic	-142031	NR_045284	100503019	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA
diff_RLAGL_Vector_cond1_8354	chr6	58999230	58999573	+	6.32607	NA	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	25101	NM_153574	58909	Mm.28813	NM_153574		Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding
diff_RLAGL_Vector_cond1_4009	chr16	49923801	49924085	+	6.32584	NA	Intergenic	MER57E2|LTR|ERV1	-56517	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA
diff_RLAGL_Vector_cond1_8428	chr6	83165834	83166058	+	6.32362	NA	promoter-TSS (NM_001198866)	promoter-TSS (NM_001198866)	22	NM_001198867	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|Glued|p150|p150<glued>	dynactin 1	protein-coding
diff_RLAGL_Vector_cond1_7658	chr5	39437640	39438038	+	6.32359	NA	Intergenic	Intergenic	165735	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA
diff_RLAGL_Vector_cond1_1368	chr10	118632290	118632489	+	6.32340	NA	Intergenic	Intergenic	-75864	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA
diff_RLAGL_Vector_cond1_10402	chrX	15322341	15322769	+	6.32288	NA	Intergenic	Intergenic	-211066	NR_033171	67395	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo
diff_RLAGL_Vector_cond1_9175	chr7	105810975	105811397	+	6.32265	NA	promoter-TSS (NM_025301)	promoter-TSS (NM_025301)	-99	NM_025301	27397	Mm.44225	NM_025301		Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding
diff_RLAGL_Vector_cond1_1238	chr10	89383557	89383792	+	6.32101	NA	Intergenic	Intergenic	60293	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding
diff_RLAGL_Vector_cond1_3588	chr15	53345967	53346440	+	6.32066	NA	promoter-TSS (NM_010162)	promoter-TSS (NM_010162)	-20	NM_010162	14042	Mm.309395	NM_010162		Ext1	AA409028	exostoses (multiple) 1	protein-coding
diff_RLAGL_Vector_cond1_261	chr1	72870263	72870469	+	6.32055	NA	intron (NM_010518, intron 1 of 3)	intron (NM_010518, intron 1 of 3)	4499	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding
diff_RLAGL_Vector_cond1_8044	chr5	136702217	136702435	+	6.32032	NA	Intergenic	Intergenic	8149	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding
diff_RLAGL_Vector_cond1_7595	chr5	26282372	26282610	+	6.31876	NA	Intergenic	Intergenic	24729	NM_001281527	664837		NM_001281527		Gm7361	-	predicted gene 7361	protein-coding
diff_RLAGL_Vector_cond1_8582	chr6	117660689	117660904	+	6.31849	NA	Intergenic	Intergenic	90973	NR_045731	72263	Mm.443289	NR_045731	ENSMUSG00000099869	1700030F04Rik	-	RIKEN cDNA 1700030F04 gene	ncRNA
diff_RLAGL_Vector_cond1_5569	chr2	77945841	77946426	+	6.31723	NA	intron (NM_030560, intron 1 of 20)	CpG	223	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_4563	chr17	69181793	69182060	+	6.31717	NA	intron (NM_013813, intron 1 of 21)	intron (NM_013813, intron 1 of 21)	25116	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding
diff_RLAGL_Vector_cond1_7542	chr5	15791701	15791916	+	6.31694	NA	Intergenic	Intergenic	-77537	NM_001281511	100502967	Mm.425235	NM_001281511	ENSMUSG00000073208	Speer4c	4933431D05Rik|SPEER-4C	spermatogenesis associated glutamate (E)-rich protein 4C	protein-coding
diff_RLAGL_Vector_cond1_8540	chr6	108659348	108659871	+	6.31579	NA	intron (NR_104577, intron 1 of 6)	CpG	-1020	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding
diff_RLAGL_Vector_cond1_1321	chr10	108072281	108072689	+	6.31472	NA	Intergenic	Intergenic	-89915	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding
diff_RLAGL_Vector_cond1_8086	chr5	143909673	143909986	+	6.31468	NA	promoter-TSS (NM_001172146)	promoter-TSS (NM_001172146)	10	NM_001172146	231872	Mm.200499	NM_146165	ENSMUSG00000029610	Aimp2	AA407136|AA407225|Aimp2(p38)|Jtv1	aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	protein-coding
diff_RLAGL_Vector_cond1_1174	chr10	80914275	80914496	+	6.31437	NA	intron (NM_010722, intron 1 of 11)	intron (NM_010722, intron 1 of 11)	3860	NM_010722	16907	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding
diff_RLAGL_Vector_cond1_10021	chr9	37420619	37420976	+	6.31381	NA	intron (NM_001164767, intron 17 of 27)	CpG	12378	NM_001164767	19649	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout homolog 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_845	chr10	4386922	4387121	+	6.31266	NA	intron (NM_001033466, intron 1 of 2)	CpG	1087	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_7020	chr4	63156933	63157177	+	6.31181	NA	Intergenic	Intergenic	-2883	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding
diff_RLAGL_Vector_cond1_3914	chr16	26581495	26581853	+	6.31098	NA	promoter-TSS (NM_001159317)	promoter-TSS (NM_001159317)	-31	NM_001159317	16180	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding
diff_RLAGL_Vector_cond1_8511	chr6	99328715	99328963	+	6.31050	NA	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	-62324	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
diff_RLAGL_Vector_cond1_4629	chr17	80255274	80255545	+	6.31029	NA	intron (NM_198942, intron 13 of 22)	intron (NM_198942, intron 13 of 22)	30920	NM_026053	67242	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem (nuclear organelle) associated protein 6	protein-coding
diff_RLAGL_Vector_cond1_7029	chr4	63738679	63738916	+	6.30992	NA	intron (NM_177371, intron 1 of 3)	intron (NM_177371, intron 1 of 3)	6316	NM_177371	326623	Mm.208152	NM_177371		Tnfsf15	Tl1|Tl1a|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding
diff_RLAGL_Vector_cond1_2922	chr13	109651872	109652125	+	6.30757	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-251811	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
diff_RLAGL_Vector_cond1_1059	chr10	56228648	56229136	+	6.30708	NA	promoter-TSS (NM_001033385)	promoter-TSS (NM_001033385)	-203	NM_001033385	544696	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding
diff_RLAGL_Vector_cond1_8871	chr7	25430378	25430805	+	6.30632	NA	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-17705	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding
diff_RLAGL_Vector_cond1_1825	chr11	90558429	90558691	+	6.30623	NA	intron (NM_011505, intron 12 of 17)	intron (NM_011505, intron 12 of 17)	79548	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_785	chr1	189105393	189105625	+	6.30471	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-97669	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_7553	chr5	17358040	17358346	+	6.30439	NA	Intergenic	Intergenic	-117929	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding
diff_RLAGL_Vector_cond1_10119	chr9	62980466	62980817	+	6.30345	NA	intron (NM_019663, intron 1 of 13)	CpG	238	NM_019663	56469	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding
diff_RLAGL_Vector_cond1_1569	chr11	29607521	29607752	+	6.30263	NA	Intergenic	Intergenic	-59596	NM_024277	78294	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding
diff_RLAGL_Vector_cond1_1914	chr11	106036565	106037040	+	6.30195	NA	promoter-TSS (NM_027946)	promoter-TSS (NM_027946)	-70	NM_027946	71833	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding
diff_RLAGL_Vector_cond1_3594	chr15	54097560	54097766	+	6.30189	NA	Intergenic	L1MC2|LINE|L1	180821	NM_008764	18383	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding
diff_RLAGL_Vector_cond1_1417	chr10	126081098	126081393	+	6.30143	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	115026	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
diff_RLAGL_Vector_cond1_6850	chr4	16013716	16014122	+	6.30088	NA	promoter-TSS (NM_145950)	promoter-TSS (NM_145950)	-42	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding
diff_RLAGL_Vector_cond1_9281	chr7	135528595	135528827	+	6.29990	NA	promoter-TSS (NM_178669)	promoter-TSS (NM_178669)	-57	NM_178669	212070	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding
diff_RLAGL_Vector_cond1_1602	chr11	35963685	35963943	+	6.29955	NA	intron (NM_170779, intron 1 of 22)	intron (NM_170779, intron 1 of 22)	16275	NM_170779	211652	Mm.31267	NM_170779		Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_6868	chr4	21931042	21931663	+	6.29931	NA	promoter-TSS (NM_175234)	promoter-TSS (NM_175234)	26	NM_175234	76132	Mm.159689	NM_175234		Faxc	6230409E13Rik|AW742931	failed axon connections homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1126	chr10	74966913	74967453	+	6.29926	NA	promoter-TSS (NM_010311)	promoter-TSS (NM_010311)	-48	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding
diff_RLAGL_Vector_cond1_5357	chr2	25983281	25983754	+	6.29647	NA	promoter-TSS (NM_001276361)	promoter-TSS (NM_001276361)	-235	NM_001276359	227634	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_10092	chr9	56564112	56564423	+	6.29608	NA	Intergenic	Intergenic	71381	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4528	chr17	63180115	63180406	+	6.29575	NA	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	132713	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA
diff_RLAGL_Vector_cond1_3613	chr15	58401385	58401656	+	6.29558	NA	Intergenic	Intergenic	-12246	NM_027211	69787	Mm.237985	NM_027211		Anxa13	1810034H17Rik|AV055219	annexin A13	protein-coding
diff_RLAGL_Vector_cond1_1883	chr11	101119893	101120155	+	6.29444	NA	promoter-TSS (NM_026501)	promoter-TSS (NM_026501)	-107	NM_134024	103733	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_6765	chr3	157534005	157534470	+	6.29351	NA	promoter-TSS (NM_017381)	promoter-TSS (NM_017381)	-160	NM_017381	53861	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_132	chr1	36272563	36272791	+	6.29203	NA	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	748	NM_153408	214854	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding
diff_RLAGL_Vector_cond1_8177	chr6	13608026	13608402	+	6.29100	NA	promoter-TSS (NM_028990)	promoter-TSS (NM_028990)	-151	NM_028990	101118	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding
diff_RLAGL_Vector_cond1_6384	chr3	69734014	69734241	+	6.29013	NA	intron (NM_133787, intron 7 of 15)	RMER15|LTR|ERVL	12072	NM_133787	97112	Mm.21062	NM_133787		Nmd3	C87860	NMD3 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_6155	chr3	9128466	9128666	+	6.28927	NA	Intergenic	Intergenic	66602	NR_040597	75149	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA
diff_RLAGL_Vector_cond1_925	chr10	24478543	24478794	+	6.28865	NA	Intergenic	Intergenic	-116774	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding
diff_RLAGL_Vector_cond1_3451	chr15	9140852	9141093	+	6.28807	NA	promoter-TSS (NM_013787)	promoter-TSS (NM_013787)	402	NM_177178	320506	Mm.259886	NM_177178		Lmbrd2	9930036E21Rik	LMBR1 domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_110	chr1	27058228	27058644	+	6.28695	NA	Intergenic	Intergenic	-370976	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding
diff_RLAGL_Vector_cond1_7016	chr4	62834041	62834324	+	6.28688	NA	Intergenic	MLTR11B|LTR|ERVK	-131392	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding
diff_RLAGL_Vector_cond1_9398	chr8	18768911	18769341	+	6.28685	NA	intron (NM_173189, intron 12 of 13)	intron (NM_173189, intron 12 of 13)	-27564	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding
diff_RLAGL_Vector_cond1_1950	chr11	114463109	114463328	+	6.28564	NA	intron (NR_037269, intron 2 of 4)	intron (NR_037269, intron 2 of 4)	-14358	NR_027643	319819	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA
diff_RLAGL_Vector_cond1_1285	chr10	102511917	102512120	+	6.28525	NA	promoter-TSS (NM_146240)	promoter-TSS (NM_146240)	-204	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding
diff_RLAGL_Vector_cond1_2139	chr12	27390414	27390683	+	6.28524	NA	Intergenic	Intergenic	-47830	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding
diff_RLAGL_Vector_cond1_6422	chr3	83194949	83195237	+	6.28391	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	139555	NM_016784	53317	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	protein-coding
diff_RLAGL_Vector_cond1_9692	chr8	87958584	87959073	+	6.28387	NA	intron (NM_033327, intron 1 of 7)	CpG	767	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding
diff_RLAGL_Vector_cond1_7068	chr4	76338022	76338452	+	6.28044	NA	intron (NM_011211, intron 10 of 39)	intron (NM_011211, intron 10 of 39)	-1059951	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
diff_RLAGL_Vector_cond1_6383	chr3	69316193	69317429	+	6.28024	NA	promoter-TSS (NM_178726)	promoter-TSS (NM_178726)	-107	NM_178726	242083	Mm.40577	NM_178726		Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding
diff_RLAGL_Vector_cond1_2494	chr12	118403610	118404013	+	6.27968	NA	Intergenic	Intergenic	-102371	NM_001166385	20688	Mm.34699	NM_009239		Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding
diff_RLAGL_Vector_cond1_10225	chr9	92541945	92543004	+	6.27884	NA	exon (NM_001142916, exon 1 of 20)	exon (NM_001142916, exon 1 of 20)	251	NM_001142916	26432	Mm.79983	NM_011961	ENSMUSG00000032374	Plod2	D530025C14Rik|LH2|Plod-2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding
diff_RLAGL_Vector_cond1_8390	chr6	67437843	67438404	+	6.27796	NA	intron (NM_144548, intron 7 of 10)	ORR1C2|LTR|ERVL-MaLR	53732	NM_144548	209590	Mm.221227	NM_144548	ENSMUSG00000049093	Il23r	IL-23R	interleukin 23 receptor	protein-coding
diff_RLAGL_Vector_cond1_2807	chr13	73160262	73160566	+	6.27710	NA	Intergenic	Intergenic	68686	NR_126459	75361	Mm.385732	NR_126459		4930555K05Rik	-	RIKEN cDNA 4930555K05 gene	ncRNA
diff_RLAGL_Vector_cond1_6890	chr4	26262881	26263238	+	6.27608	NA	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	83593	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding
diff_RLAGL_Vector_cond1_8279	chr6	40635663	40635973	+	6.27607	NA	intron (NM_001171003, intron 1 of 47)	intron (NM_001171003, intron 1 of 47)	6987	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding
diff_RLAGL_Vector_cond1_299	chr1	80340903	80341174	+	6.27546	NA	promoter-TSS (NM_016716)	promoter-TSS (NM_016716)	-348	NM_016716	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding
diff_RLAGL_Vector_cond1_2681	chr13	54303480	54303879	+	6.27536	NA	Intergenic	Intergenic	-67670	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding
diff_RLAGL_Vector_cond1_3529	chr15	36210736	36211016	+	6.27503	NA	intron (NM_012031, intron 11 of 18)	intron (NM_012031, intron 11 of 18)	29288	NR_106173	102465888		NR_106173	ENSMUSG00000098457	Mir8097	Gm27497|mmu-mir-8097	microRNA 8097	ncRNA
diff_RLAGL_Vector_cond1_8020	chr5	134314829	134315049	+	6.27175	NA	promoter-TSS (NM_010365)	promoter-TSS (NM_010365)	-179	NM_001080748	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding
diff_RLAGL_Vector_cond1_3684	chr15	73423076	73423374	+	6.27173	NA	promoter-TSS (NM_001130409)	promoter-TSS (NM_001130409)	-34	NM_007982	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding
diff_RLAGL_Vector_cond1_10311	chr9	114324712	114324915	+	6.27148	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-5322	NM_007535	12046	Mm.378887	NM_007535	ENSMUSG00000053820	Bcl2a1c	A1-c	B cell leukemia/lymphoma 2 related protein A1c	protein-coding
diff_RLAGL_Vector_cond1_58	chr1	16228111	16228790	+	6.27036	NA	TTS (NM_001111272)	TTS (NM_001111272)	122568	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding
diff_RLAGL_Vector_cond1_220	chr1	64942048	64942298	+	6.26877	NA	intron (NM_001039493, intron 1 of 7)	intron (NM_001039493, intron 1 of 7)	14651	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding
diff_RLAGL_Vector_cond1_279	chr1	75191910	75192124	+	6.26737	NA	promoter-TSS (NR_051998)	promoter-TSS (NR_051998)	-7	NM_001288612	245860	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding
diff_RLAGL_Vector_cond1_3418	chr15	4145383	4145721	+	6.26727	NA	intron (NM_024188, intron 15 of 16)	intron (NM_024188, intron 15 of 16)	-118146	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA
diff_RLAGL_Vector_cond1_3173	chr14	62837075	62837813	+	6.26687	NA	promoter-TSS (NM_175546)	promoter-TSS (NM_175546)	-246	NM_175546	268752	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_611	chr1	160531483	160531774	+	6.26668	NA	intron (NM_013862, intron 13 of 20)	intron (NM_013862, intron 13 of 20)	46125	NM_001146330	620246	Mm.478780	NM_001146330		Gpr52	EG620246	G protein-coupled receptor 52	protein-coding
diff_RLAGL_Vector_cond1_4596	chr17	74866705	74867226	+	6.26640	NA	Intergenic	Intergenic	-138564	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_8930	chr7	39822625	39823112	+	6.26626	NA	Intergenic	Intergenic	305102	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding
diff_RLAGL_Vector_cond1_1936	chr11	112346588	112346893	+	6.26571	NA	Intergenic	Intergenic	364616	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA
diff_RLAGL_Vector_cond1_5113	chr19	21407351	21407661	+	6.26549	NA	intron (NM_010266, intron 10 of 13)	MTD|LTR|ERVL-MaLR	65155	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581	guanine deaminase	protein-coding
diff_RLAGL_Vector_cond1_5163	chr19	41980813	41981680	+	6.26488	NA	promoter-TSS (NM_145500)	promoter-TSS (NM_145500)	-110	NM_028152	72199	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_5483	chr2	58106849	58107123	+	6.26455	NA	Intergenic	RLTR14|LTR|ERV1	53136	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_6520	chr3	107036123	107036572	+	6.26451	NA	5' UTR (NM_008418, exon 1 of 1)	5' UTR (NM_008418, exon 1 of 1)	185	NM_008418	16491	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding
diff_RLAGL_Vector_cond1_1416	chr10	125994864	125995213	+	6.26379	NA	intron (NM_177152, intron 4 of 18)	ORR1E|LTR|ERVL-MaLR	28819	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
diff_RLAGL_Vector_cond1_1227	chr10	88146797	88147183	+	6.26349	NA	promoter-TSS (NM_027191)	promoter-TSS (NM_027191)	-2	NM_027191	69736	Mm.222184	NM_027191	ENSMUSG00000035351	Nup37	2410003L22Rik|2810039M17Rik	nucleoporin 37	protein-coding
diff_RLAGL_Vector_cond1_7482	chr4	154300050	154300363	+	6.26282	NA	promoter-TSS (NM_001112744)	promoter-TSS (NM_001112744)	-311	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
diff_RLAGL_Vector_cond1_6906	chr4	30675897	30676145	+	6.26179	NA	intron (NR_040655, intron 2 of 6)	intron (NR_040655, intron 2 of 6)	11425	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
diff_RLAGL_Vector_cond1_9394	chr8	15832916	15833123	+	6.26155	NA	Intergenic	RLTR49|LTR|ERVK	335819	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
diff_RLAGL_Vector_cond1_2740	chr13	62908345	62908595	+	6.26052	NA	Intergenic	Intergenic	-20188	NM_019395	14121	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding
diff_RLAGL_Vector_cond1_6847	chr4	15268097	15268311	+	6.25976	NA	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	2384	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding
diff_RLAGL_Vector_cond1_5209	chr19	53599948	53600222	+	6.25962	NA	promoter-TSS (NM_007790)	promoter-TSS (NM_007790)	-311	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding
diff_RLAGL_Vector_cond1_7480	chr4	154160754	154161018	+	6.25882	NA	promoter-TSS (NM_026388)	promoter-TSS (NM_026388)	-202	NM_026388	67808	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding
diff_RLAGL_Vector_cond1_7672	chr5	43351107	43351357	+	6.25880	NA	Intergenic	Intergenic	-115878	NR_028417	665934	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934|ENSMUSG00000054483	predicted gene 7854	ncRNA
diff_RLAGL_Vector_cond1_8348	chr6	57557797	57558046	+	6.25823	NA	Intergenic	MTD|LTR|ERVL-MaLR	-22495	NM_175523	243382	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding
diff_RLAGL_Vector_cond1_4153	chr16	85173621	85174081	+	6.25809	NA	promoter-TSS (NM_001198824)	promoter-TSS (NM_001198824)	-144	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding
diff_RLAGL_Vector_cond1_8746	chr6	144041291	144041590	+	6.25794	NA	intron (NM_001113559, intron 3 of 13)	intron (NM_001113559, intron 3 of 13)	168128	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
diff_RLAGL_Vector_cond1_7800	chr5	77114872	77115277	+	6.25782	NA	promoter-TSS (NM_175606)	promoter-TSS (NM_175606)	49	NM_175606	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding
diff_RLAGL_Vector_cond1_8979	chr7	49284032	49284234	+	6.25588	NA	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	37944	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
diff_RLAGL_Vector_cond1_8188	chr6	17281014	17281482	+	6.25554	NA	promoter-TSS (NM_016900)	promoter-TSS (NM_016900)	63	NM_001277756	12390	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding
diff_RLAGL_Vector_cond1_9900	chr9	7836951	7837318	+	6.25538	NA	promoter-TSS (NM_007465)	promoter-TSS (NM_007465)	-77	NM_007465	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding
diff_RLAGL_Vector_cond1_7114	chr4	88857937	88858157	+	6.25483	NA	Intergenic	Intergenic	7960	NM_010502	15962	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding
diff_RLAGL_Vector_cond1_5822	chr2	136824026	136824679	+	6.25469	NA	Intergenic	MTC|LTR|ERVL-MaLR	-66866	NM_028201	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_3783	chr15	94568857	94569075	+	6.25463	NA	TTS (NM_029926)	TTS (NM_029926)	20858	NM_008971	19230	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin, actin-binding protein, homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9840	chr8	122476011	122476327	+	6.25401	NA	promoter-TSS (NM_001033142)	promoter-TSS (NM_001033142)	26	NM_153775	66965	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2 homolog (S. pombe)	protein-coding
diff_RLAGL_Vector_cond1_3041	chr14	21988368	21988580	+	6.25337	NA	intron (NM_145459, intron 1 of 2)	CpG-4314	1127	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding
diff_RLAGL_Vector_cond1_7410	chr4	143162072	143162278	+	6.25332	NA	exon (NM_001256380, exon 6 of 8)	exon (NM_001256380, exon 6 of 8)	-26013	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA
diff_RLAGL_Vector_cond1_2431	chr12	108275277	108275890	+	6.25290	NA	promoter-TSS (NM_001159910)	promoter-TSS (NM_001159910)	-166	NM_001159910	668158	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010	coiled-coil domain containing 85C	protein-coding
diff_RLAGL_Vector_cond1_10372	chr9	122655524	122655900	+	6.25215	NA	Intergenic	Intergenic	-27164	NR_029819	387156		NR_029819	ENSMUSG00000065414	Mir138-1	Mirn138|Mirn138-1|mir-138-1	microRNA 138-1	ncRNA
diff_RLAGL_Vector_cond1_10076	chr9	50659696	50659896	+	6.25210	NA	promoter-TSS (NM_145614)	promoter-TSS (NM_145614)	-16	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding
diff_RLAGL_Vector_cond1_8307	chr6	48465316	48465557	+	6.25085	NA	intron (NM_173428, intron 36 of 102)	intron (NM_173428, intron 36 of 102)	17207	NM_173428	243369	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding
diff_RLAGL_Vector_cond1_1909	chr11	104195812	104196032	+	6.24886	NA	Intergenic	Intergenic	9595	NM_001082535	237958	Mm.117063	NM_199019	ENSMUSG00000049506	Sppl2c	4933407P14Rik|IMP5	signal peptide peptidase 2C	protein-coding
diff_RLAGL_Vector_cond1_4364	chr17	31057789	31058021	+	6.24678	NA	intron (NM_009593, intron 1 of 14)	CpG	211	NM_009593	11307	Mm.15691	NM_009593		Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding
diff_RLAGL_Vector_cond1_745	chr1	181865032	181865421	+	6.24626	NA	Intergenic	Intergenic	-22825	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding
diff_RLAGL_Vector_cond1_3084	chr14	34573456	34573734	+	6.24539	NA	intron (NM_001039073, intron 4 of 14)	intron (NM_001039073, intron 4 of 14)	15012	NM_001039074	24131	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding
diff_RLAGL_Vector_cond1_8250	chr6	31776779	31777309	+	6.24417	NA	Intergenic	Intergenic	-213107	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding
diff_RLAGL_Vector_cond1_7444	chr4	148820413	148820639	+	6.24329	NA	intron (NM_001159344, intron 1 of 20)	intron (NM_001159344, intron 1 of 20)	16134	NM_001159344	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding
diff_RLAGL_Vector_cond1_3218	chr14	74972811	74973057	+	6.24297	NA	Intergenic	Intergenic	-2152	NR_046078	100043169	Mm.145900	NR_046078		Gm4278	-	predicted gene 4278	ncRNA
diff_RLAGL_Vector_cond1_10466	chrX	77052032	77052513	+	6.24271	NA	Intergenic	Intergenic	423664	NR_035475	100316834		NR_035475	ENSMUSG00000088980	Mir669m-2	mmu-mir-669m-2	microRNA 669m-2	ncRNA
diff_RLAGL_Vector_cond1_10506	chrX	99975256	99975551	+	6.24260	NA	promoter-TSS (NM_001177938)	promoter-TSS (NM_001177938)	-203	NM_010099	13607	Mm.328086	NM_010099	ENSMUSG00000059327	Eda	EDA1|Ed1|Eda-A1|Eda-A2|HED|Ta|XLHED|tabby	ectodysplasin-A	protein-coding
diff_RLAGL_Vector_cond1_10442	chrX	56597839	56598286	+	6.24139	NA	promoter-TSS (NM_146234)	promoter-TSS (NM_146234)	-143	NM_146234	236792	Mm.291824	NM_146234	ENSMUSG00000061273	Mmgt1	9630048L06Rik|BC032271|Emc5|Mir5116|Tmem32|mir-5116	membrane magnesium transporter 1	protein-coding
diff_RLAGL_Vector_cond1_808	chr1	191964545	191964792	+	6.24104	NA	Intergenic	Intergenic	-12702	NM_023727	74023	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding
diff_RLAGL_Vector_cond1_525	chr1	138618010	138618221	+	6.24102	NA	intron (NM_001311148, intron 1 of 7)	intron (NM_001311148, intron 1 of 7)	1642	NM_001311148	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding
diff_RLAGL_Vector_cond1_6332	chr3	59808870	59809415	+	6.24039	NA	Intergenic	RLTR13A2|LTR|ERVK	-51909	NM_001243003	666803	Mm.389443	NM_001243003	ENSMUSG00000095522	Gm8298	EG666803	predicted gene 8298	protein-coding
diff_RLAGL_Vector_cond1_7511	chr5	3927287	3927490	+	6.23999	NA	promoter-TSS (NM_194462)	promoter-TSS (NM_194462)	-798	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding
diff_RLAGL_Vector_cond1_10266	chr9	104337687	104338065	+	6.23990	NA	promoter-TSS (NM_207668)	promoter-TSS (NM_207668)	-154	NM_019807	56318	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding
diff_RLAGL_Vector_cond1_4358	chr17	29396896	29397102	+	6.23811	NA	Intergenic	Intergenic	36085	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_1810	chr11	87680927	87681214	+	6.23790	NA	intron (NM_172448, intron 2 of 9)	intron (NM_172448, intron 2 of 9)	17983	NM_172448	207742	Mm.440230	NM_172448	ENSMUSG00000034177	Rnf43	4732452J19Rik	ring finger protein 43	protein-coding
diff_RLAGL_Vector_cond1_8112	chr5	149648190	149648401	+	6.23650	NA	Intergenic	Intergenic	-11980	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding
diff_RLAGL_Vector_cond1_9755	chr8	106585232	106585509	+	6.23649	NA	Intergenic	Intergenic	-1773	NR_045470	68692	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA
diff_RLAGL_Vector_cond1_2366	chr12	91500539	91500763	+	6.23645	NA	intron (NM_001113404, intron 3 of 8)	intron (NM_001113404, intron 3 of 8)	88998	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding
diff_RLAGL_Vector_cond1_1934	chr11	111424831	111425140	+	6.23538	NA	Intergenic	Intergenic	358821	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
diff_RLAGL_Vector_cond1_512	chr1	135917297	135917506	+	6.23498	NA	intron (NM_001313701, intron 1 of 13)	intron (NM_001313701, intron 1 of 13)	1806	NM_001313701	18772	Mm.4494	NM_019645	ENSMUSG00000026413	Pkp1	-	plakophilin 1	protein-coding
diff_RLAGL_Vector_cond1_8125	chr5	151176076	151176343	+	6.23466	NA	intron (NM_146258, intron 1 of 13)	intron (NM_146258, intron 1 of 13)	13984	NM_146258	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding
diff_RLAGL_Vector_cond1_7624	chr5	33103987	33104490	+	6.23453	NA	promoter-TSS (NM_019810)	promoter-TSS (NM_019810)	19	NM_019810	20537	Mm.25237	NM_019810	ENSMUSG00000011034	Slc5a1	Sglt1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding
diff_RLAGL_Vector_cond1_3267	chr14	87472863	87473106	+	6.23434	NA	intron (NM_001253755, intron 4 of 11)	intron (NM_001253755, intron 4 of 11)	56401	NM_172605	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_5202	chr19	53038280	53038697	+	6.23346	NA	intron (NM_133216, intron 1 of 20)	CpG	166	NM_133216	170750	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding
diff_RLAGL_Vector_cond1_8313	chr6	50109974	50110219	+	6.23285	NA	promoter-TSS (NM_019939)	promoter-TSS (NM_019939)	-145	NM_019939	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding
diff_RLAGL_Vector_cond1_9330	chr7	145025534	145025825	+	6.23270	NA	Intergenic	Intergenic	-85754	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding
diff_RLAGL_Vector_cond1_7494	chr4	155488311	155488543	+	6.23169	NA	Intergenic	Intergenic	-2934	NM_001160016	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding
diff_RLAGL_Vector_cond1_9115	chr7	88277760	88278264	+	6.23068	NA	promoter-TSS (NM_009982)	promoter-TSS (NM_009982)	-73	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding
diff_RLAGL_Vector_cond1_5146	chr19	34877937	34878167	+	6.23065	NA	promoter-TSS (NM_023792)	promoter-TSS (NM_023792)	-135	NM_023792	75735	Mm.24742	NM_023792		Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding
diff_RLAGL_Vector_cond1_6949	chr4	45184758	45185025	+	6.22983	NA	promoter-TSS (NM_001081172)	promoter-TSS (NM_001081172)	-15	NM_001081172	666060	Mm.24783	NM_001081172	ENSMUSG00000035615	Frmpd1	BC031840|mKIAA0967	FERM and PDZ domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_5351	chr2	25180864	25181189	+	6.22975	NA	5' UTR (NM_025980, exon 1 of 1)	5' UTR (NM_025980, exon 1 of 1)	268	NM_025980	67122	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding
diff_RLAGL_Vector_cond1_2823	chr13	76018065	76018844	+	6.22933	NA	5' UTR (NM_001131068, exon 1 of 4)	5' UTR (NM_001131068, exon 1 of 4)	108	NM_178916	218341	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding
diff_RLAGL_Vector_cond1_3934	chr16	32728815	32729095	+	6.22890	NA	Intergenic	Intergenic	-6931	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding
diff_RLAGL_Vector_cond1_303	chr1	82189555	82189906	+	6.22870	NA	Intergenic	Intergenic	57814	NR_105762	102466629		NR_105762	ENSMUSG00000098797	Mir6344	Gm27840|mmu-mir-6344	microRNA 6344	ncRNA
diff_RLAGL_Vector_cond1_2311	chr12	73884137	73884411	+	6.22772	NA	Intergenic	Intergenic	-17050	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding
diff_RLAGL_Vector_cond1_7627	chr5	33651953	33652180	+	6.22646	NA	exon (NM_009193, exon 2 of 8)	exon (NM_009193, exon 2 of 8)	508	NM_001289724	20492	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding
diff_RLAGL_Vector_cond1_6048	chr2	169928794	169929045	+	6.22602	NA	Intergenic	Intergenic	34268	NR_131974	446211	Mm.266854	NR_131974		AY702102	STDP1	cDNA sequence AY702102	ncRNA
diff_RLAGL_Vector_cond1_3068	chr14	30586921	30587128	+	6.22562	NA	Intergenic	Intergenic	14875	NR_037237	100526475		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA
diff_RLAGL_Vector_cond1_8896	chr7	30559669	30559983	+	6.22503	NA	promoter-TSS (NM_029377)	promoter-TSS (NM_029377)	-180	NM_001290569	75660	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_1369	chr10	118633458	118633716	+	6.22373	NA	Intergenic	Intergenic	-77062	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA
diff_RLAGL_Vector_cond1_819	chr1	193423874	193424300	+	6.22219	NA	Intergenic	Intergenic	-53805	NM_144817	215303	Mm.40329	NM_144817	ENSMUSG00000016179	Camk1g	CLICK-III|CaMKIgamma	calcium/calmodulin-dependent protein kinase I gamma	protein-coding
diff_RLAGL_Vector_cond1_5038	chr18	88938781	88939039	+	6.22128	NA	Intergenic	MER34|LTR|ERV1	-32880	NM_175542	246102	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding
diff_RLAGL_Vector_cond1_4731	chr18	7666083	7666338	+	6.22051	NA	Intergenic	Intergenic	-39347	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding
diff_RLAGL_Vector_cond1_2032	chr11	121958784	121959027	+	6.21908	NA	Intergenic	RLTR22_Mus|LTR|ERVK	128687	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_8706	chr6	137789721	137789944	+	6.21866	NA	intron (NM_172733, intron 5 of 8)	intron (NM_172733, intron 5 of 8)	35255	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_8198	chr6	18076458	18076952	+	6.21831	NA	intron (NM_023729, intron 5 of 12)	intron (NM_023729, intron 5 of 12)	32356	NM_023729	74068	Mm.73091	NM_023729	ENSMUSG00000010796	Asz1	4933400N19Rik|Gasz|ORF3	ankyrin repeat, SAM and basic leucine zipper domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4956	chr18	73122244	73122688	+	6.21758	NA	Intergenic	Intergenic	-450239	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 homolog C (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_5256	chr2	6335143	6335681	+	6.21718	NA	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	12655	NM_001080548	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding
diff_RLAGL_Vector_cond1_2486	chr12	117962741	117962991	+	6.21715	NA	intron (NM_010060, intron 62 of 81)	intron (NM_010060, intron 62 of 81)	119005	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding
diff_RLAGL_Vector_cond1_1862	chr11	98412275	98412666	+	6.21695	NA	promoter-TSS (NM_001003817)	promoter-TSS (NM_001003817)	-14	NM_001003817	13866	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)	protein-coding
diff_RLAGL_Vector_cond1_10046	chr9	43729396	43729671	+	6.21682	NA	Intergenic	Intergenic	-15043	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Pvrl1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|nectin-1	poliovirus receptor-related 1	protein-coding
diff_RLAGL_Vector_cond1_2224	chr12	50521268	50521495	+	6.21600	NA	intron (NM_008858, intron 1 of 18)	intron (NM_008858, intron 1 of 18)	127842	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
diff_RLAGL_Vector_cond1_2309	chr12	73500807	73501097	+	6.21571	NA	Intergenic	Intergenic	45443	NM_178715	238257	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding
diff_RLAGL_Vector_cond1_405	chr1	106714078	106714510	+	6.21552	NA	promoter-TSS (NM_009741)	promoter-TSS (NM_009741)	-4	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding
diff_RLAGL_Vector_cond1_5000	chr18	80634439	80634665	+	6.21421	NA	intron (NM_198429, intron 9 of 9)	intron (NM_198429, intron 9 of 9)	73621	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding
diff_RLAGL_Vector_cond1_4790	chr18	24205754	24205979	+	6.21395	NA	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	-128	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_3763	chr15	90679217	90679770	+	6.21221	NA	promoter-TSS (NM_001033851)	promoter-TSS (NM_001033851)	-105	NM_025815	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
diff_RLAGL_Vector_cond1_5448	chr2	49050102	49050645	+	6.21218	NA	intron (NM_029924, intron 2 of 16)	Lx5c|LINE|L1	100865	NM_029924	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding
diff_RLAGL_Vector_cond1_3395	chr14	122883903	122884216	+	6.21176	NA	intron (NM_144844, intron 22 of 23)	intron (NM_144844, intron 22 of 23)	29106	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding
diff_RLAGL_Vector_cond1_1314	chr10	107383714	107384148	+	6.21132	NA	intron (NM_001033223, intron 4 of 5)	intron (NM_001033223, intron 4 of 5)	102203	NM_008656	17877	Mm.4984	NM_008656	ENSMUSG00000000435	Myf5	B130010J22Rik|Myf-5|bHLHc2	myogenic factor 5	protein-coding
diff_RLAGL_Vector_cond1_5759	chr2	124601751	124602540	+	6.21072	NA	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-8151	NM_001291000	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
diff_RLAGL_Vector_cond1_5907	chr2	148310909	148311193	+	6.21070	NA	Intergenic	RMER1A|Other|Other	-84326	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding
diff_RLAGL_Vector_cond1_10362	chr9	121651199	121651607	+	6.21043	NA	intron (NM_011703, intron 1 of 12)	intron (NM_011703, intron 1 of 12)	8687	NM_011703	22354	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding
diff_RLAGL_Vector_cond1_5330	chr2	20936804	20937032	+	6.20955	NA	intron (NM_001081364, intron 1 of 23)	MER68|LTR|ERVL	30803	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding
diff_RLAGL_Vector_cond1_245	chr1	71102438	71102746	+	6.20925	NA	intron (NM_007525, intron 1 of 10)	CpG	380	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding
diff_RLAGL_Vector_cond1_5010	chr18	82821552	82822143	+	6.20872	NA	Intergenic	Intergenic	-34050	NR_125720	73985	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA
diff_RLAGL_Vector_cond1_595	chr1	156467934	156468433	+	6.20844	NA	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	6145	NM_009230	20652	Mm.28099	NM_009230		Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_4016	chr16	51106080	51106297	+	6.20763	NA	Intergenic	MTD|LTR|ERVL-MaLR	322779	NR_131005	78639	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA
diff_RLAGL_Vector_cond1_9089	chr7	80160379	80160843	+	6.20739	NA	Intergenic	Intergenic	-26230	NM_013659	20352	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding
diff_RLAGL_Vector_cond1_5858	chr2	140985785	140986329	+	6.20624	NA	intron (NM_001013802, intron 4 of 18)	Lx9|LINE|L1	-314581	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_3855	chr16	10299560	10299921	+	6.20558	NA	intron (NM_007929, intron 1 of 4)	ORR1E|LTR|ERVL-MaLR	14228	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding
diff_RLAGL_Vector_cond1_5639	chr2	93334382	93334848	+	6.20521	NA	promoter-TSS (NM_183180)	promoter-TSS (NM_183180)	-128	NM_183180	241556	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding
diff_RLAGL_Vector_cond1_5139	chr19	31082616	31083092	+	6.20405	NA	promoter-TSS (NM_031249)	promoter-TSS (NM_031249)	13	NM_031249	83410	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding
diff_RLAGL_Vector_cond1_3464	chr15	11399680	11400014	+	6.20382	NA	promoter-TSS (NM_033074)	promoter-TSS (NM_033074)	-189	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding
diff_RLAGL_Vector_cond1_3590	chr15	53490969	53491239	+	6.20353	NA	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-144921	NM_010162	14042	Mm.309395	NM_010162		Ext1	AA409028	exostoses (multiple) 1	protein-coding
diff_RLAGL_Vector_cond1_3851	chr16	8494334	8494554	+	6.20338	NA	Intergenic	Intergenic	-18985	NM_172961	268860	Mm.259315	NM_172961	ENSMUSG00000057880	Abat	9630038C02Rik|AI255750|ENSMUSG00000051226|Gabaat|Gabat|Gm9851|I54|Laibat|X61497	4-aminobutyrate aminotransferase	protein-coding
diff_RLAGL_Vector_cond1_1353	chr10	115505640	115506064	+	6.20338	NA	intron (NM_010195, intron 2 of 17)	intron (NM_010195, intron 2 of 17)	-64134	NM_029982	77798	Mm.446685	NM_029982	ENSMUSG00000092210	A930009A15Rik	-	RIKEN cDNA A930009A15 gene	protein-coding
diff_RLAGL_Vector_cond1_1753	chr11	75630748	75631060	+	6.20337	NA	promoter-TSS (NM_008916)	promoter-TSS (NM_008916)	-116	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding
diff_RLAGL_Vector_cond1_8612	chr6	123931051	123931270	+	6.20311	NA	Intergenic	IAPEY4_LTR|LTR|ERVK	-77970	NM_001104641	545874	Mm.347595	NM_001104641	ENSMUSG00000094672	Vmn2r25	EG545874	vomeronasal 2, receptor 25	protein-coding
diff_RLAGL_Vector_cond1_10031	chr9	40323227	40323427	+	6.20298	NA	intron (NM_172768, intron 4 of 19)	intron (NM_172768, intron 4 of 19)	-10145	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA
diff_RLAGL_Vector_cond1_5178	chr19	46152156	46152524	+	6.20270	NA	promoter-TSS (NM_178930)	promoter-TSS (NM_178930)	-218	NM_178930	107338	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding
diff_RLAGL_Vector_cond1_7864	chr5	102460500	102460756	+	6.20203	NA	Intergenic	Intergenic	-20763	NM_146161	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
diff_RLAGL_Vector_cond1_7411	chr4	143325424	143325777	+	6.20167	NA	Intergenic	Intergenic	-24150	NM_001162983	242735	Mm.94020	NM_001162983	ENSMUSG00000028584	Lrrc38	A230053A07Rik	leucine rich repeat containing 38	protein-coding
diff_RLAGL_Vector_cond1_5847	chr2	139821709	139821922	+	6.20052	NA	Intergenic	Intergenic	143637	NM_001276489	319909	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1 homolog (zebrafish)	protein-coding
diff_RLAGL_Vector_cond1_6569	chr3	122245384	122245596	+	6.20039	NA	promoter-TSS (NM_008129)	promoter-TSS (NM_008129)	-67	NM_008129	14630	Mm.292676	NM_008129		Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding
diff_RLAGL_Vector_cond1_10019	chr9	37348016	37348398	+	6.19908	NA	5' UTR (NM_001081429, exon 1 of 16)	5' UTR (NM_001081429, exon 1 of 16)	185	NM_001081429	245902	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding
diff_RLAGL_Vector_cond1_2777	chr13	67525818	67526376	+	6.19899	NA	5' UTR (NM_133228, exon 1 of 4)	5' UTR (NM_133228, exon 1 of 4)	134	NM_133228	170763	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding
diff_RLAGL_Vector_cond1_126	chr1	34842672	34843277	+	6.19877	NA	promoter-TSS (NM_001160236)	promoter-TSS (NM_001160236)	76	NM_001160235	214469	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	mKIAA4042	family with sequence similarity 168, member B	protein-coding
diff_RLAGL_Vector_cond1_4161	chr16	87602723	87603192	+	6.19656	NA	Intergenic	Intergenic	49627	NM_144854	224419	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding
diff_RLAGL_Vector_cond1_7293	chr4	126735867	126736113	+	6.19633	NA	exon (NM_198960, exon 1 of 7)	exon (NM_198960, exon 1 of 7)	279	NM_198960	332937	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding
diff_RLAGL_Vector_cond1_5329	chr2	20736315	20736686	+	6.19601	NA	intron (NM_178059, intron 6 of 18)	intron (NM_178059, intron 6 of 18)	216987	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
diff_RLAGL_Vector_cond1_10093	chr9	56901207	56901409	+	6.19509	NA	Intergenic	Intergenic	27063	NM_175483	235406	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding
diff_RLAGL_Vector_cond1_4597	chr17	75004912	75005199	+	6.19505	NA	promoter-TSS (NM_019919)	promoter-TSS (NM_019919)	-474	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_8060	chr5	139074047	139074348	+	6.19445	NA	intron (NM_001253890, intron 4 of 10)	L1MC|LINE|L1	55555	NM_008923	19085	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding
diff_RLAGL_Vector_cond1_4382	chr17	33915868	33916202	+	6.19437	NA	promoter-TSS (NM_020625)	promoter-TSS (NM_020625)	-141	NM_020625	81630	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding
diff_RLAGL_Vector_cond1_3303	chr14	102014955	102015231	+	6.19246	NA	Intergenic	Intergenic	285165	NM_201529	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding
diff_RLAGL_Vector_cond1_6181	chr3	16369103	16369310	+	6.19225	NA	Intergenic	RLTR13A2|LTR|ERVK	186023	NR_027375	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding
diff_RLAGL_Vector_cond1_10321	chr9	115844376	115844662	+	6.19144	NA	Intergenic	Intergenic	-64936	NM_028638	73748	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding
diff_RLAGL_Vector_cond1_3760	chr15	90616021	90616389	+	6.19061	NA	intron (NM_025815, intron 4 of 19)	MTEa|LTR|ERVL-MaLR	63183	NM_001033851	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding
diff_RLAGL_Vector_cond1_2745	chr13	63278815	63279081	+	6.18857	NA	intron (NM_001289924, intron 13 of 16)	intron (NM_001289924, intron 13 of 16)	18199	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA
diff_RLAGL_Vector_cond1_5396	chr2	32757029	32757519	+	6.18572	NA	promoter-TSS (NM_152800)	promoter-TSS (NM_152800)	40	NR_045485	30933	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding
diff_RLAGL_Vector_cond1_1665	chr11	55023225	55023517	+	6.18515	NA	intron (NM_013472, intron 1 of 25)	intron (NM_013472, intron 1 of 25)	10100	NM_001110211	11749	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding
diff_RLAGL_Vector_cond1_365	chr1	93132722	93132999	+	6.18438	NA	Intergenic	Intergenic	-2380	NM_001276710	11611	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding
diff_RLAGL_Vector_cond1_7780	chr5	73156296	73156560	+	6.18431	NA	intron (NM_028194, intron 3 of 62)	Lx8|LINE|L1	100190	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	furry homolog-like (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5758	chr2	124592782	124593153	+	6.18268	NA	intron (NM_001290997, intron 5 of 20)	B4A|SINE|B4	-17329	NM_001291000	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
diff_RLAGL_Vector_cond1_2706	chr13	59509799	59510305	+	6.18210	NA	intron (NM_001284219, intron 10 of 24)	intron (NM_001284219, intron 10 of 24)	34399	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9720	chr8	94770875	94771290	+	6.18109	NA	Intergenic	Intergenic	-1098	NM_009142	20312	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding
diff_RLAGL_Vector_cond1_10049	chr9	44343818	44344035	+	6.18093	NA	intron (NM_013551, intron 1 of 13)	CpG	302	NM_013551	15288	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding
diff_RLAGL_Vector_cond1_3336	chr14	105897092	105897469	+	6.18042	NA	promoter-TSS (NM_011897)	promoter-TSS (NM_011897)	-461	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8281	chr6	40783746	40783964	+	6.18003	NA	intron (NR_035473, intron 2 of 3)	intron (NR_035473, intron 2 of 3)	103639	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding
diff_RLAGL_Vector_cond1_843	chr10	4233187	4233438	+	6.17981	NA	Intergenic	Intergenic	-33017	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding
diff_RLAGL_Vector_cond1_9964	chr9	22826608	22826915	+	6.17815	NA	intron (NM_181316, intron 20 of 21)	intron (NM_181316, intron 20 of 21)	351046	NM_181316	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding
diff_RLAGL_Vector_cond1_3951	chr16	37193979	37194444	+	6.17787	NA	intron (NM_172440, intron 18 of 27)	MTE-int|LTR|ERVL-MaLR	182425	NM_029977	77782	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding
diff_RLAGL_Vector_cond1_5910	chr2	148655053	148655310	+	6.17525	NA	Intergenic	Intergenic	-17434	NM_019761	56488	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding
diff_RLAGL_Vector_cond1_203	chr1	60566447	60566861	+	6.17322	NA	5' UTR (NM_001045513, exon 1 of 14)	5' UTR (NM_001045513, exon 1 of 14)	111	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
diff_RLAGL_Vector_cond1_1997	chr11	119022828	119023203	+	6.17134	NA	promoter-TSS (NM_007623)	promoter-TSS (NM_007623)	-6	NM_007623	12416	Mm.14547	NM_007623	ENSMUSG00000025577	Cbx2	M33|MOD2|pc	chromobox 2	protein-coding
diff_RLAGL_Vector_cond1_9345	chr8	4779471	4779685	+	6.17112	NA	promoter-TSS (NM_011369)	promoter-TSS (NM_011369)	-44	NM_011369	20419	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_4110	chr16	73011560	73011858	+	6.17038	NA	intron (NM_019413, intron 23 of 28)	intron (NM_019413, intron 23 of 28)	348560	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9667	chr8	82777976	82778203	+	6.16983	NA	Intergenic	HERV16-int|LTR|ERVL	-3963	NM_145600	30932	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding
diff_RLAGL_Vector_cond1_10087	chr9	52168830	52169060	+	6.16955	NA	promoter-TSS (NM_001162921)	promoter-TSS (NM_001162921)	-834	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding
diff_RLAGL_Vector_cond1_1229	chr10	88357001	88357346	+	6.16915	NA	promoter-TSS (NM_027878)	promoter-TSS (NM_027878)	-98	NM_027878	71712	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding
diff_RLAGL_Vector_cond1_2291	chr12	70707652	70707869	+	6.16753	NA	Intergenic	Intergenic	-117754	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_7240	chr4	117478390	117478673	+	6.16741	NA	intron (NM_025739, intron 2 of 14)	intron (NM_025739, intron 2 of 14)	18521	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding
diff_RLAGL_Vector_cond1_9265	chr7	132580629	132580840	+	6.16734	NA	Intergenic	Intergenic	-4336	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874	ornithine aminotransferase	protein-coding
diff_RLAGL_Vector_cond1_8862	chr7	24325071	24325396	+	6.16731	NA	Intergenic	RLTR19|LTR|ERVK	-8567	NM_001199321	22756	Mm.295762	NM_009568	ENSMUSG00000074282	Zfp94	-	zinc finger protein 94	protein-coding
diff_RLAGL_Vector_cond1_419	chr1	113194265	113194732	+	6.16656	NA	Intergenic	Intergenic	-1329580	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
diff_RLAGL_Vector_cond1_3874	chr16	14859500	14859867	+	6.16655	NA	Intergenic	Intergenic	-46963	NM_025769	66793	Mm.100270	NM_025769		Efcab1	4930449A16Rik|5430404L10Rik	EF hand calcium binding domain 1	protein-coding
diff_RLAGL_Vector_cond1_4663	chr17	87315040	87315386	+	6.16374	NA	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	32327	NM_028639	225049	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding
diff_RLAGL_Vector_cond1_7247	chr4	118179838	118180312	+	6.16349	NA	promoter-TSS (NM_172382)	promoter-TSS (NM_172382)	-32	NM_172382	230674	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding
diff_RLAGL_Vector_cond1_5492	chr2	59416296	59416517	+	6.16316	NA	Intergenic	Intergenic	-29724	NR_040510	76676	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA
diff_RLAGL_Vector_cond1_9400	chr8	18898883	18899472	+	6.16149	NA	Intergenic	Intergenic	51694	NM_001286469	319581	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X Kell blood group precursor-related family, member 5	protein-coding
diff_RLAGL_Vector_cond1_6159	chr3	9573720	9573919	+	6.16040	NA	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	36266	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding
diff_RLAGL_Vector_cond1_1431	chr10	127826480	127826779	+	6.16010	NA	intron (NR_037604, intron 1 of 3)	RLTR12B|LTR|ERVK	2413	NR_037604	380674	Mm.384871	NM_199313		Rdh18-ps	Rdh18	retinol dehydrogenase 18, pseudogene	pseudo
diff_RLAGL_Vector_cond1_8061	chr5	139149812	139150078	+	6.15747	NA	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	-278	NM_001081265	433956	Mm.5547	NM_001081265	ENSMUSG00000025857	Dnaaf5	BC053401|C76907|Heatr2	dynein, axonemal, assembly factor 5	protein-coding
diff_RLAGL_Vector_cond1_3628	chr15	61506541	61506758	+	6.15715	NA	Intergenic	Intergenic	267802	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA
diff_RLAGL_Vector_cond1_9304	chr7	139990938	139991357	+	6.15686	NA	intron (NM_007403, intron 2 of 23)	intron (NM_007403, intron 2 of 23)	1415	NM_007403	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding
diff_RLAGL_Vector_cond1_4339	chr17	25964408	25964658	+	6.15624	NA	exon (NM_015830, exon 1 of 11)	exon (NM_015830, exon 1 of 11)	972	NM_015830	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding
diff_RLAGL_Vector_cond1_1610	chr11	36847644	36847894	+	6.15537	NA	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	96472	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
diff_RLAGL_Vector_cond1_3404	chr14	124277154	124277454	+	6.15534	NA	intron (NM_207667, intron 1 of 4)	RMER20B|LTR|ERVK	-84758	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding
diff_RLAGL_Vector_cond1_1134	chr10	77022385	77022790	+	6.15372	NA	TTS (NR_045882)	TTS (NR_045882)	-10152	NM_001199271	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding
diff_RLAGL_Vector_cond1_10580	chrX	152855195	152855593	+	6.15361	NA	Intergenic	MuLV-int|LTR|ERV1	73473	NM_010951	18241	Mm.5157	NM_010951	ENSMUSG00000025333	Gpr143	Oa1	G protein-coupled receptor 143	protein-coding
diff_RLAGL_Vector_cond1_3180	chr14	64428721	64429084	+	6.15197	NA	intron (NM_001253712, intron 1 of 5)	intron (NM_001253712, intron 1 of 5)	-11946	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding
diff_RLAGL_Vector_cond1_7513	chr5	4757012	4757597	+	6.15188	NA	exon (NM_021457, exon 1 of 1)	exon (NM_021457, exon 1 of 1)	912	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5500	chr2	60880996	60881759	+	6.14981	NA	promoter-TSS (NM_001141932)	promoter-TSS (NM_001141932)	61	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_5227	chr19	59697686	59697981	+	6.14928	NA	Intergenic	Intergenic	204697	NR_045308	72647	Mm.410849	NR_045308	ENSMUSG00000100119	2700089I24Rik	-	RIKEN cDNA 2700089I24 gene	ncRNA
diff_RLAGL_Vector_cond1_9684	chr8	85071617	85071816	+	6.14877	NA	promoter-TSS (NM_001039514)	promoter-TSS (NM_001039514)	-41	NM_001039514	330817	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding
diff_RLAGL_Vector_cond1_4410	chr17	37270546	37271063	+	6.14806	NA	intron (NM_013819, intron 2 of 7)	intron (NM_013819, intron 2 of 7)	570	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding
diff_RLAGL_Vector_cond1_3585	chr15	52207325	52207615	+	6.14722	NA	Intergenic	Intergenic	-88083	NM_172816	239436	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding
diff_RLAGL_Vector_cond1_1348	chr10	115205431	115205721	+	6.14655	NA	intron (NM_025706, intron 14 of 16)	Lx8b|LINE|L1	-20554	NM_173391	216343	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding
diff_RLAGL_Vector_cond1_569	chr1	151177763	151178028	+	6.14601	NA	Intergenic	Intergenic	39861	NR_038011	402734	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA
diff_RLAGL_Vector_cond1_7412	chr4	143411630	143411833	+	6.14562	NA	promoter-TSS (NM_172877)	promoter-TSS (NM_172877)	-695	NM_172877	242736	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding
diff_RLAGL_Vector_cond1_3499	chr15	27477747	27478004	+	6.14557	NA	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	11198	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding
diff_RLAGL_Vector_cond1_8097	chr5	147076441	147076759	+	6.14479	NA	promoter-TSS (NM_181730)	promoter-TSS (NM_181730)	-28	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding
diff_RLAGL_Vector_cond1_1592	chr11	32532894	32533290	+	6.14432	NA	promoter-TSS (NM_009288)	promoter-TSS (NM_009288)	-174	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding
diff_RLAGL_Vector_cond1_2300	chr12	72085666	72086404	+	6.14386	NA	promoter-TSS (NM_026038)	promoter-TSS (NM_026038)	196	NM_024205	104771	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding
diff_RLAGL_Vector_cond1_4987	chr18	79000493	79000807	+	6.14157	NA	intron (NM_053099, intron 2 of 5)	intron (NM_053099, intron 2 of 5)	108741	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_1616	chr11	40733469	40733771	+	6.14156	NA	promoter-TSS (NM_001290697)	promoter-TSS (NM_001290697)	-41	NM_026023	52653	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_7105	chr4	86725264	86725561	+	6.14123	NA	Intergenic	Intergenic	-23143	NM_184088	329877	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding
diff_RLAGL_Vector_cond1_10599	chrX	160901272	160901504	+	6.14091	NA	TTS (NM_001001496)	TTS (NM_001001496)	5664	NM_001001496	414089	Mm.123113	NM_001001496	ENSMUSG00000055691	Gja6	A530015O12Rik|Cnx33|Cx33|Gja-6	gap junction protein, alpha 6	protein-coding
diff_RLAGL_Vector_cond1_8490	chr6	94283738	94283947	+	6.13948	NA	promoter-TSS (NM_010367)	promoter-TSS (NM_010367)	75	NM_001286785	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3743	chr15	85583602	85583815	+	6.13821	NA	non-coding (NR_040433, exon 2 of 5)	non-coding (NR_040433, exon 2 of 5)	-1887	NM_009528	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding
diff_RLAGL_Vector_cond1_1548	chr11	23255432	23256009	+	6.13669	NA	promoter-TSS (NM_134014)	promoter-TSS (NM_134014)	-321	NM_134014	103573	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1, CRM1 homolog (yeast)	protein-coding
diff_RLAGL_Vector_cond1_3236	chr14	79527721	79528026	+	6.13655	NA	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	12199	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding
diff_RLAGL_Vector_cond1_6745	chr3	154596769	154597256	+	6.13434	NA	promoter-TSS (NM_172474)	promoter-TSS (NM_172474)	86	NM_001168358	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_5526	chr2	65557755	65558044	+	6.13370	NA	intron (NM_018732, intron 1 of 26)	intron (NM_018732, intron 1 of 26)	9593	NM_018732	20269	Mm.330256	NM_018732	ENSMUSG00000057182	Scn3a	Gm1000|Nav1.3	sodium channel, voltage-gated, type III, alpha	protein-coding
diff_RLAGL_Vector_cond1_7834	chr5	92745701	92745932	+	6.13357	NA	intron (NM_015756, intron 1 of 10)	intron (NM_015756, intron 1 of 10)	42746	NR_035487	100316841		NR_035487	ENSMUSG00000089268	Mir1961	mmu-mir-1961	microRNA 1961	ncRNA
diff_RLAGL_Vector_cond1_10448	chrX	65514014	65514288	+	6.13337	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	466507	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding
diff_RLAGL_Vector_cond1_6014	chr2	164458009	164458323	+	6.13299	NA	Intergenic	Intergenic	-2805	NM_025575	66460	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8593	chr6	119395727	119396046	+	6.13180	NA	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	21597	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding
diff_RLAGL_Vector_cond1_1159	chr10	80115280	80115755	+	6.13137	NA	promoter-TSS (NM_001301854)	promoter-TSS (NM_001301854)	-286	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding
diff_RLAGL_Vector_cond1_586	chr1	154022860	154023070	+	6.13077	NA	Intergenic	Intergenic	123036	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding
diff_RLAGL_Vector_cond1_10023	chr9	37488702	37489103	+	6.13041	NA	promoter-TSS (NM_146222)	promoter-TSS (NM_146222)	-419	NM_146222	235184	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_10194	chr9	84785892	84786109	+	6.13016	NA	Intergenic	Intergenic	11602	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA
diff_RLAGL_Vector_cond1_8617	chr6	124919705	124920225	+	6.12963	NA	Intergenic	Intergenic	-2019	NM_026988	69202	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding
diff_RLAGL_Vector_cond1_5667	chr2	103566138	103566379	+	6.12900	NA	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-52	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_7949	chr5	115845070	115845298	+	6.12894	NA	promoter-TSS (NM_007708)	promoter-TSS (NM_007708)	-472	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding
diff_RLAGL_Vector_cond1_8835	chr7	16046562	16046874	+	6.12856	NA	Intergenic	Intergenic	-25224	NM_001099277	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding
diff_RLAGL_Vector_cond1_9636	chr8	76928918	76929172	+	6.12848	NA	intron (NM_001083906, intron 2 of 8)	MLT1A|LTR|ERVL-MaLR	26537	NM_001083906	110784	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding
diff_RLAGL_Vector_cond1_9538	chr8	53638977	53639415	+	6.12809	NA	promoter-TSS (NM_146208)	promoter-TSS (NM_146208)	-131	NM_146208	234258	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_1372	chr10	118978442	118978691	+	6.12738	NA	Intergenic	Intergenic	-51423	NR_110482	216377	Mm.208936	NR_110482		Gm38403	C230029M16	predicted gene, 38403	ncRNA
diff_RLAGL_Vector_cond1_10581	chrX	153155392	153155600	+	6.12689	NA	intron (NM_001004154, intron 6 of 10)	B2_Mm2|SINE|B2	15538	NM_001004154	245670	Mm.190922	NM_001004154	ENSMUSG00000041658	Rragb	-	Ras-related GTP binding B	protein-coding
diff_RLAGL_Vector_cond1_4787	chr18	23810593	23811023	+	6.12666	NA	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	6838	NM_153058	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding
diff_RLAGL_Vector_cond1_7157	chr4	100539490	100539706	+	6.12533	NA	intron (NM_001033773, intron 8 of 9)	intron (NM_001033773, intron 8 of 9)	60731	NM_001033773	381534	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding
diff_RLAGL_Vector_cond1_1216	chr10	86342804	86343039	+	6.12373	NA	intron (NM_011595, intron 2 of 4)	MIR|SINE|MIR	42509	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding
diff_RLAGL_Vector_cond1_1141	chr10	78043444	78043703	+	6.12296	NA	promoter-TSS (NM_009646)	promoter-TSS (NM_009646)	37	NM_001271553	11634	Mm.35300	NM_009646	ENSMUSG00000000731	Aire	-	autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	protein-coding
diff_RLAGL_Vector_cond1_2007	chr11	119979925	119980264	+	6.12172	NA	intron (NM_130862, intron 3 of 13)	intron (NM_130862, intron 3 of 13)	-34673	NR_037225	100526518		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA
diff_RLAGL_Vector_cond1_5953	chr2	153586508	153586827	+	6.12121	NA	Intergenic	Intergenic	46114	NM_133850	99311	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_4183	chr16	89501755	89502367	+	6.12083	NA	Intergenic	Intergenic	6262	NM_027771	71363	Mm.158680	NM_027771	ENSMUSG00000056706	Krtap7-1	5430433J05Rik	keratin associated protein 7-1	protein-coding
diff_RLAGL_Vector_cond1_2219	chr12	49391203	49391936	+	6.12027	NA	intron (NR_026733, intron 2 of 2)	CpG	1917	NR_026733	67293	Mm.185800	NR_026733	ENSMUSG00000104861	3110039M20Rik	-	RIKEN cDNA 3110039M20 gene	ncRNA
diff_RLAGL_Vector_cond1_10086	chr9	52149338	52149690	+	6.11854	NA	intron (NM_001162921, intron 1 of 5)	intron (NM_001162921, intron 1 of 5)	18597	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding
diff_RLAGL_Vector_cond1_825	chr1	194223077	194223289	+	6.11774	NA	promoter-TSS (NR_040477)	promoter-TSS (NR_040477)	-424	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
diff_RLAGL_Vector_cond1_6945	chr4	44300784	44300995	+	6.11724	NA	promoter-TSS (NM_010790)	promoter-TSS (NM_010790)	-28	NM_010790	17279	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding
diff_RLAGL_Vector_cond1_8512	chr6	99726149	99726490	+	6.11707	NA	promoter-TSS (NM_001037539)	promoter-TSS (NM_001037539)	73	NM_015768	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding
diff_RLAGL_Vector_cond1_615	chr1	161259197	161259461	+	6.11693	NA	Intergenic	B3|SINE|B2	-8119	NM_001303408	11758	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding
diff_RLAGL_Vector_cond1_4409	chr17	37197035	37197340	+	6.11678	NA	exon (NM_001011518, exon 1 of 1)	exon (NM_001011518, exon 1 of 1)	779	NM_001011518	258219	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding
diff_RLAGL_Vector_cond1_7370	chr4	138304486	138304938	+	6.11665	NA	promoter-TSS (NM_007838)	promoter-TSS (NM_007838)	-26	NM_007838	13200	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding
diff_RLAGL_Vector_cond1_5626	chr2	91655399	91655671	+	6.11612	NA	intron (NR_027371, intron 4 of 13)	intron (NR_027371, intron 4 of 13)	2327	NM_146124	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding
diff_RLAGL_Vector_cond1_9592	chr8	68168358	68168841	+	6.11462	NA	Intergenic	LTR16A|LTR|ERVL	-107929	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding
diff_RLAGL_Vector_cond1_9799	chr8	116993098	116993312	+	6.11352	NA	intron (NM_026572, intron 1 of 4)	CpG	244	NM_026572	68133	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding
diff_RLAGL_Vector_cond1_1769	chr11	78328262	78328487	+	6.11272	NA	promoter-TSS (NM_201406)	promoter-TSS (NM_201406)	-48	NM_201406	276846	Mm.295908	NM_201406	ENSMUSG00000041958	Pigs	BC058979|Gm393|Gm689	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding
diff_RLAGL_Vector_cond1_4544	chr17	65919243	65919539	+	6.11241	NA	Intergenic	Intergenic	31796	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7000	chr4	57845034	57845264	+	6.11215	NA	promoter-TSS (NM_009649)	promoter-TSS (NM_009649)	-99	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding
diff_RLAGL_Vector_cond1_2236	chr12	52434156	52434358	+	6.11200	NA	Intergenic	Intergenic	-81820	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding
diff_RLAGL_Vector_cond1_9666	chr8	82416965	82417369	+	6.11077	NA	Intergenic	Intergenic	-14581	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding
diff_RLAGL_Vector_cond1_4618	chr17	78417558	78417988	+	6.11034	NA	intron (NM_001285949, intron 1 of 7)	CpG	379	NM_199448	225020	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding
diff_RLAGL_Vector_cond1_579	chr1	153185932	153186289	+	6.10931	NA	intron (NM_008485, intron 1 of 23)	CpG	337	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding
diff_RLAGL_Vector_cond1_6785	chr4	3373090	3373680	+	6.10928	NA	Intergenic	Intergenic	-163705	NR_037306	100499523		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA
diff_RLAGL_Vector_cond1_2987	chr14	7817850	7818077	+	6.10793	NA	promoter-TSS (NM_001081427)	promoter-TSS (NM_001081427)	6	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding
diff_RLAGL_Vector_cond1_3263	chr14	87141000	87141483	+	6.10782	NA	promoter-TSS (NM_019670)	promoter-TSS (NM_019670)	-127	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
diff_RLAGL_Vector_cond1_6170	chr3	14582607	14582867	+	6.10771	NA	intron (NM_007892, intron 1 of 7)	intron (NM_007892, intron 1 of 7)	4066	NM_007892	13559	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding
diff_RLAGL_Vector_cond1_4508	chr17	56476382	56476581	+	6.10674	NA	promoter-TSS (NM_001252453)	promoter-TSS (NM_001252453)	-1	NM_001252453	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding
diff_RLAGL_Vector_cond1_9681	chr8	84893685	84894101	+	6.10552	NA	promoter-TSS (NM_008097)	promoter-TSS (NM_008097)	28	NM_001044744	270076	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding
diff_RLAGL_Vector_cond1_3784	chr15	94600120	94600417	+	6.10515	NA	Intergenic	Intergenic	-10444	NM_008971	19230	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin, actin-binding protein, homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2787	chr13	69029282	69029650	+	6.10490	NA	Intergenic	Intergenic	-29925	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding
diff_RLAGL_Vector_cond1_494	chr1	133685702	133686141	+	6.10457	NA	intron (NM_172842, intron 2 of 5)	intron (NM_172842, intron 2 of 5)	4095	NM_172842	240754	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding
diff_RLAGL_Vector_cond1_9368	chr8	9233398	9233878	+	6.10439	NA	intron (NM_173446, intron 1 of 2)	intron (NM_173446, intron 1 of 2)	88969	NR_073360	74688	Mm.159298	NR_073360		4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA
diff_RLAGL_Vector_cond1_6746	chr3	154602134	154602429	+	6.10256	NA	intron (NM_009968, intron 1 of 8)	RLTR22_Mur|LTR|ERVK	-5183	NM_172474	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_3034	chr14	20393548	20393879	+	6.10112	NA	promoter-TSS (NM_025440)	promoter-TSS (NM_025440)	-158	NM_025440	66242	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16	mitochondrial ribosomal protein S16	protein-coding
diff_RLAGL_Vector_cond1_8316	chr6	50730870	50731142	+	6.10021	NA	Intergenic	Intergenic	-45109	NR_045984	319981	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA
diff_RLAGL_Vector_cond1_9567	chr8	60965374	60965588	+	6.09979	NA	intron (NM_007711, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	-10682	NM_173876	12725	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding
diff_RLAGL_Vector_cond1_6638	chr3	136836427	136836751	+	6.09930	NA	intron (NM_001293622, intron 2 of 12)	intron (NM_001293622, intron 2 of 12)	166523	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding
diff_RLAGL_Vector_cond1_6516	chr3	105895208	105895588	+	6.09896	NA	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-9023	NM_009631	11542	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding
diff_RLAGL_Vector_cond1_6546	chr3	115887771	115888498	+	6.09885	NA	promoter-TSS (NR_027894)	promoter-TSS (NR_027894)	-4	NR_015487	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA
diff_RLAGL_Vector_cond1_4589	chr17	73432390	73432900	+	6.09776	NA	Intergenic	Intergenic	-33349	NM_001033444	381122	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding
diff_RLAGL_Vector_cond1_7206	chr4	111452210	111452428	+	6.09760	NA	intron (NR_033793, intron 4 of 5)	intron (NR_033793, intron 4 of 5)	37313	NM_026279	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_9758	chr8	107066173	107066408	+	6.09739	NA	promoter-TSS (NM_025458)	promoter-TSS (NM_025458)	-646	NM_025458	66269	Mm.23032	NM_025458	ENSMUSG00000031919	Tmed6	1810015P03Rik|1810018I24Rik	transmembrane emp24 protein transport domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_10034	chr9	40800679	40801369	+	6.09729	NA	promoter-TSS (NM_031165)	promoter-TSS (NM_031165)	-249	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding
diff_RLAGL_Vector_cond1_9405	chr8	19163673	19164016	+	6.09702	NA	Intergenic	Intergenic	5957	NM_153115	78128	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding
diff_RLAGL_Vector_cond1_3560	chr15	44689588	44689837	+	6.09696	NA	intron (NM_001285840, intron 3 of 6)	intron (NM_001285840, intron 3 of 6)	16776	NM_001285841	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding
diff_RLAGL_Vector_cond1_1100	chr10	68541404	68541721	+	6.09544	NA	intron (NM_028491, intron 1 of 7)	intron (NM_028491, intron 1 of 7)	313	NM_028491	73287	Mm.141830	NM_028491	ENSMUSG00000019945	1700040L02Rik	-	RIKEN cDNA 1700040L02 gene	protein-coding
diff_RLAGL_Vector_cond1_7466	chr4	151057940	151058284	+	6.09489	NA	promoter-TSS (NM_009498)	promoter-TSS (NM_009498)	-159	NM_009498	22319	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_5018	chr18	84080350	84080637	+	6.09350	NA	intron (NM_001081300, intron 1 of 1)	intron (NM_001081300, intron 1 of 1)	6069	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding
diff_RLAGL_Vector_cond1_6582	chr3	126638364	126638663	+	6.09347	NA	intron (NM_001293665, intron 2 of 19)	intron (NM_001293665, intron 2 of 19)	41562	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
diff_RLAGL_Vector_cond1_10104	chr9	59656054	59656424	+	6.09319	NA	promoter-TSS (NM_011099)	promoter-TSS (NM_011099)	-129	NM_011099	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding
diff_RLAGL_Vector_cond1_1164	chr10	80435834	80436164	+	6.09292	NA	Intergenic	Intergenic	-2346	NM_001164147	21423	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding
diff_RLAGL_Vector_cond1_4531	chr17	63499954	63500216	+	6.09198	NA	5' UTR (NM_015794, exon 1 of 9)	5' UTR (NM_015794, exon 1 of 9)	495	NM_015794	50758	Mm.136366	NM_015794		Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding
diff_RLAGL_Vector_cond1_1987	chr11	117969090	117969458	+	6.09163	NA	promoter-TSS (NM_007707)	promoter-TSS (NM_007707)	92	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding
diff_RLAGL_Vector_cond1_5005	chr18	82168747	82168965	+	6.09145	NA	Intergenic	Intergenic	-176776	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA
diff_RLAGL_Vector_cond1_3907	chr16	24874355	24874589	+	6.09101	NA	intron (NM_001145952, intron 8 of 11)	L1M5|LINE|L1	152617	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding
diff_RLAGL_Vector_cond1_3426	chr15	6319338	6319754	+	6.09088	NA	intron (NM_001008702, intron 1 of 13)	URR1A|DNA|hAT-Charlie	19757	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
diff_RLAGL_Vector_cond1_7755	chr5	65199436	65200000	+	6.08997	NA	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	22	NM_153391	213081	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding
diff_RLAGL_Vector_cond1_8933	chr7	41360966	41361207	+	6.08943	NA	Intergenic	MTC|LTR|ERVL-MaLR	32174	NM_183167	233168	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding
diff_RLAGL_Vector_cond1_8214	chr6	22355941	22356311	+	6.08830	NA	promoter-TSS (NM_138587)	promoter-TSS (NM_138587)	-45	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding
diff_RLAGL_Vector_cond1_4027	chr16	52445808	52446252	+	6.08814	NA	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	6967	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_1067	chr10	58323361	58323654	+	6.08808	NA	promoter-TSS (NM_026148)	promoter-TSS (NM_026148)	41	NM_026148	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding
diff_RLAGL_Vector_cond1_8498	chr6	96457706	96458106	+	6.08662	NA	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	-291701	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo
diff_RLAGL_Vector_cond1_9332	chr8	3481817	3482123	+	6.08464	NA	intron (NM_029598, intron 4 of 8)	RLTR12A|LTR|ERVK	11108	NM_029598	76406	Mm.74996	NM_029598	ENSMUSG00000040340	1700019B03Rik	-	RIKEN cDNA 1700019B03 gene	protein-coding
diff_RLAGL_Vector_cond1_7619	chr5	32458685	32459106	+	6.08454	NA	promoter-TSS (NM_172707)	promoter-TSS (NM_172707)	-75	NM_172707	19046	Mm.241931	NM_172707		Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding
diff_RLAGL_Vector_cond1_10165	chr9	77806588	77806984	+	6.08234	NA	Intergenic	Intergenic	52251	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding
diff_RLAGL_Vector_cond1_3406	chr15	3251049	3251320	+	6.08222	NA	Intergenic	Intergenic	-19583	NM_001042613	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Sepp1	AU018766|D15Ucla1|Se-P|selp	selenoprotein P, plasma, 1	protein-coding
diff_RLAGL_Vector_cond1_741	chr1	181256986	181257226	+	6.08194	NA	Intergenic	Intergenic	-45128	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding
diff_RLAGL_Vector_cond1_5921	chr2	150173894	150174153	+	6.08138	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-7732	NM_001145863	100271882		NM_001145863	ENSMUSG00000079009	Gm14139	OTTMUSG00000015769	predicted gene 14139	protein-coding
diff_RLAGL_Vector_cond1_9301	chr7	139379855	139380074	+	6.08033	NA	Intergenic	Intergenic	-9145	NM_001127363	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding
diff_RLAGL_Vector_cond1_7136	chr4	95935893	95936101	+	6.08016	NA	Intergenic	Intergenic	31038	NR_045777	319247	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA
diff_RLAGL_Vector_cond1_8353	chr6	58968391	58968789	+	6.07961	NA	intron (NM_153574, intron 7 of 17)	intron (NM_153574, intron 7 of 17)	55912	NM_153574	58909	Mm.28813	NM_153574		Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding
diff_RLAGL_Vector_cond1_6286	chr3	51340788	51341100	+	6.07909	NA	promoter-TSS (NM_023502)	promoter-TSS (NM_023502)	-300	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding
diff_RLAGL_Vector_cond1_9393	chr8	15807987	15808374	+	6.07837	NA	Intergenic	Intergenic	360658	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
diff_RLAGL_Vector_cond1_8100	chr5	147757990	147758621	+	6.07812	NA	Intergenic	Intergenic	-32317	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding
diff_RLAGL_Vector_cond1_7395	chr4	141297715	141298237	+	6.07749	NA	Intergenic	Intergenic	-3245	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding
diff_RLAGL_Vector_cond1_6248	chr3	36351945	36352164	+	6.07719	NA	Intergenic	Intergenic	123470	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA
diff_RLAGL_Vector_cond1_10157	chr9	74324428	74324827	+	6.07680	NA	Intergenic	Intergenic	214293	NM_001033500	546144	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding
diff_RLAGL_Vector_cond1_6485	chr3	99290360	99290595	+	6.07677	NA	intron (NM_009323, intron 1 of 7)	intron (NM_009323, intron 1 of 7)	36717	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding
diff_RLAGL_Vector_cond1_8752	chr6	144273581	144273783	+	6.07663	NA	Intergenic	RLTR9D|LTR|ERVK	-64114	NM_001243163	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
diff_RLAGL_Vector_cond1_7822	chr5	87532387	87532614	+	6.07658	NA	intron (NM_019878, intron 3 of 7)	intron (NM_019878, intron 3 of 7)	5695	NM_019878	56362	Mm.23502	NM_019878	ENSMUSG00000029269	Sult1b1	ST1B1|St2b2	sulfotransferase family 1B, member 1	protein-coding
diff_RLAGL_Vector_cond1_50	chr1	12992597	12992816	+	6.07657	NA	Intergenic	CpG	-1571	NM_172841	240726	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding
diff_RLAGL_Vector_cond1_9088	chr7	79888522	79888933	+	6.07625	NA	intron (NM_009682, intron 4 of 5)	intron (NM_009682, intron 4 of 5)	31913	NM_009682	11778	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding
diff_RLAGL_Vector_cond1_6204	chr3	21268395	21268630	+	6.07458	NA	Intergenic	Intergenic	-808140	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_5258	chr2	6380481	6380703	+	6.07335	NA	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	27856	NM_181399	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding
diff_RLAGL_Vector_cond1_2779	chr13	67637740	67637959	+	6.07301	NA	promoter-TSS (NM_183146)	promoter-TSS (NM_183146)	-96	NM_183146	212281	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding
diff_RLAGL_Vector_cond1_1765	chr11	78032050	78032405	+	6.07278	NA	promoter-TSS (NM_183286)	promoter-TSS (NM_183286)	-86	NM_183286	70451	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding
diff_RLAGL_Vector_cond1_4243	chr17	7945258	7945997	+	6.07261	NA	promoter-TSS (NM_025789)	promoter-TSS (NM_025789)	13	NM_025789	66832	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding
diff_RLAGL_Vector_cond1_3136	chr14	54876591	54877000	+	6.07139	NA	exon (NM_001167908, exon 2 of 2)	exon (NM_001167908, exon 2 of 2)	743	NM_001167908	105651	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding
diff_RLAGL_Vector_cond1_7420	chr4	144901630	144902028	+	6.07133	NA	intron (NM_011303, intron 1 of 5)	intron (NM_011303, intron 1 of 5)	8692	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding
diff_RLAGL_Vector_cond1_4431	chr17	44301437	44301737	+	6.07063	NA	Intergenic	MTEb|LTR|ERVL-MaLR	113015	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding
diff_RLAGL_Vector_cond1_9467	chr8	35946669	35946878	+	6.07042	NA	Intergenic	Intergenic	-63816	NR_046181	330737	Mm.381743	NR_046181		5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA
diff_RLAGL_Vector_cond1_7706	chr5	49285568	49286007	+	6.07029	NA	promoter-TSS (NM_001199244)	promoter-TSS (NM_001199244)	-128	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
diff_RLAGL_Vector_cond1_6617	chr3	131976019	131976220	+	6.06991	NA	Intergenic	Intergenic	-109173	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf homolog 2 (Xenopus laevis)	protein-coding
diff_RLAGL_Vector_cond1_10143	chr9	69289754	69289971	+	6.06920	NA	promoter-TSS (NM_001289916)	promoter-TSS (NM_001289916)	21	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding
diff_RLAGL_Vector_cond1_4323	chr17	24251098	24251581	+	6.06842	NA	promoter-TSS (NM_007634)	promoter-TSS (NM_007634)	70	NM_007634	12449	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding
diff_RLAGL_Vector_cond1_1542	chr11	22002041	22002266	+	6.06836	NA	promoter-TSS (NM_011023)	promoter-TSS (NM_011023)	-502	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homolog 1	protein-coding
diff_RLAGL_Vector_cond1_7504	chr5	3216107	3216476	+	6.06798	NA	Intergenic	Intergenic	-127602	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding
diff_RLAGL_Vector_cond1_9160	chr7	103909914	103910314	+	6.06779	NA	Intergenic	Intergenic	3772	NM_013616	18365	Mm.377106	NM_013616	ENSMUSG00000101488	Olfr65	5'[b]3|5'beta3|MOR1-1|MOR1-2|ORL670|Olfr64	olfactory receptor 65	protein-coding
diff_RLAGL_Vector_cond1_4052	chr16	57553129	57553635	+	6.06749	NA	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	4140	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding
diff_RLAGL_Vector_cond1_4811	chr18	34751579	34752028	+	6.06634	NA	promoter-TSS (NM_009860)	promoter-TSS (NM_009860)	-270	NM_009860	12532	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding
diff_RLAGL_Vector_cond1_3273	chr14	98084821	98085361	+	6.06612	NA	intron (NM_007826, intron 1 of 11)	intron (NM_007826, intron 1 of 11)	84674	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2928	chr13	110769280	110769491	+	6.06573	NA	Intergenic	Intergenic	-134114	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA
diff_RLAGL_Vector_cond1_1457	chr11	4804146	4804349	+	6.06567	NA	intron (NM_001252250, intron 6 of 16)	intron (NM_001252250, intron 6 of 16)	28888	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromatosis 2	protein-coding
diff_RLAGL_Vector_cond1_585	chr1	153899857	153900194	+	6.06554	NA	promoter-TSS (NM_008131)	promoter-TSS (NM_008131)	96	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding
diff_RLAGL_Vector_cond1_4059	chr16	58750996	58751319	+	6.06545	NA	Intergenic	RMER1A|Other|Other	10083	NM_147001	259003	Mm.390862	NM_147001	ENSMUSG00000071510	Olfr172	MOR184-2	olfactory receptor 172	protein-coding
diff_RLAGL_Vector_cond1_7175	chr4	104367398	104367650	+	6.06541	NA	promoter-TSS (NM_177259)	promoter-TSS (NM_177259)	-14	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
diff_RLAGL_Vector_cond1_6827	chr4	12008007	12008298	+	6.06527	NA	Intergenic	Intergenic	41578	NR_040577	100503636	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA
diff_RLAGL_Vector_cond1_9238	chr7	127448879	127449276	+	6.06481	NA	promoter-TSS (NM_175163)	promoter-TSS (NM_175163)	81	NM_175163	71131	Mm.474533	NM_175163		Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding
diff_RLAGL_Vector_cond1_6015	chr2	164737411	164737901	+	6.06322	NA	intron (NM_027961, intron 1 of 3)	intron (NM_027961, intron 1 of 3)	5611	NM_027961	71856	Mm.330770	NM_027961	ENSMUSG00000076434	Wfdc3	1700015L13Rik|1700127F16Rik	WAP four-disulfide core domain 3	protein-coding
diff_RLAGL_Vector_cond1_10374	chr9	122823498	122823916	+	6.06319	NA	intron (NM_001013405, intron 5 of 10)	intron (NM_001013405, intron 5 of 10)	18160	NM_001013405	382117	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_4280	chr17	16006526	16006799	+	6.06297	NA	Intergenic	Intergenic	-180076	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding
diff_RLAGL_Vector_cond1_2081	chr12	12530831	12531095	+	6.06296	NA	Intergenic	L2b|LINE|L2	-138488	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
diff_RLAGL_Vector_cond1_7952	chr5	117160520	117161094	+	6.06295	NA	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	27219	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding
diff_RLAGL_Vector_cond1_1237	chr10	88950141	88950545	+	6.06287	NA	intron (NR_102339, intron 26 of 26)	intron (NR_102339, intron 26 of 26)	64351	NM_145423	216225	Mm.77381	NM_145423	ENSMUSG00000020062	Slc5a8	Ait|SMCT	solute carrier family 5 (iodide transporter), member 8	protein-coding
diff_RLAGL_Vector_cond1_721	chr1	178568716	178568924	+	6.06249	NA	intron (NM_001161665, intron 2 of 14)	intron (NM_001161665, intron 2 of 14)	39695	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding
diff_RLAGL_Vector_cond1_8369	chr6	62915143	62915383	+	6.06214	NA	Intergenic	Intergenic	-341594	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
diff_RLAGL_Vector_cond1_9419	chr8	23776352	23776657	+	6.06191	NA	intron (NM_177086, intron 2 of 6)	intron (NM_177086, intron 2 of 6)	106843	NM_001277239	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding
diff_RLAGL_Vector_cond1_480	chr1	131461099	131461348	+	6.06156	NA	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	66138	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding
diff_RLAGL_Vector_cond1_44	chr1	10198049	10198305	+	6.06012	NA	intron (NM_001102430, intron 9 of 37)	MTD|LTR|ERVL-MaLR	34493	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding
diff_RLAGL_Vector_cond1_4758	chr18	16026243	16026571	+	6.05881	NA	Intergenic	Intergenic	-308361	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
diff_RLAGL_Vector_cond1_6983	chr4	53351267	53351472	+	6.05853	NA	Intergenic	Intergenic	-81137	NR_033139	381524	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA
diff_RLAGL_Vector_cond1_6646	chr3	138312927	138313405	+	6.05836	NA	promoter-TSS (NM_026945)	promoter-TSS (NM_026945)	-120	NM_026945	69117	Mm.46265	NM_026945	ENSMUSG00000053054	Adh6a	1810009C16Rik|Adh5a	alcohol dehydrogenase 6A (class V)	protein-coding
diff_RLAGL_Vector_cond1_4716	chr18	4920354	4920704	+	6.05792	NA	Intergenic	CpG	108043	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA
diff_RLAGL_Vector_cond1_905	chr10	17727751	17728194	+	6.05661	NA	Intergenic	Intergenic	4744	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding
diff_RLAGL_Vector_cond1_4336	chr17	25832942	25833506	+	6.05645	NA	5' UTR (NM_019719, exon 1 of 7)	5' UTR (NM_019719, exon 1 of 7)	137	NM_019719	56424	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding
diff_RLAGL_Vector_cond1_248	chr1	71144707	71145175	+	6.05597	NA	Intergenic	Intergenic	-41969	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding
diff_RLAGL_Vector_cond1_831	chr1	194746890	194747131	+	6.05573	NA	intron (NM_008882, intron 5 of 31)	intron (NM_008882, intron 5 of 31)	127181	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding
diff_RLAGL_Vector_cond1_7174	chr4	104366973	104367179	+	6.05525	NA	promoter-TSS (NM_177259)	promoter-TSS (NM_177259)	-462	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding
diff_RLAGL_Vector_cond1_6461	chr3	93646240	93646475	+	6.05457	NA	Intergenic	RLTR13B4|LTR|ERVK	6329	NM_001007222	399673	Mm.377260	NM_001007222	ENSMUSG00000103362	Tdpoz2	-	TD and POZ domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_86	chr1	22325220	22325426	+	6.05409	NA	intron (NM_053270, intron 12 of 16)	Lx6|LINE|L1	107520	NM_053270	116837	Mm.60061	NM_053270		Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding
diff_RLAGL_Vector_cond1_1704	chr11	64079385	64079708	+	6.05288	NA	promoter-TSS (NM_178379)	promoter-TSS (NM_178379)	62	NR_033780	66456	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA
diff_RLAGL_Vector_cond1_427	chr1	114074637	114074867	+	6.05286	NA	Intergenic	Intergenic	-1610385	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
diff_RLAGL_Vector_cond1_9920	chr9	14134701	14135001	+	6.05264	NA	Intergenic	Intergenic	-141450	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding
diff_RLAGL_Vector_cond1_1638	chr11	50292465	50292703	+	6.05256	NA	promoter-TSS (NM_175334)	promoter-TSS (NM_175334)	-248	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_333	chr1	87848679	87848893	+	6.05191	NA	Intergenic	Intergenic	-4501	NM_177646	227333	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding
diff_RLAGL_Vector_cond1_1288	chr10	102862523	102862843	+	6.05127	NA	Intergenic	Intergenic	166094	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_924	chr10	24132360	24132565	+	6.05085	NA	Intergenic	Intergenic	-16855	NM_016797	53331	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding
diff_RLAGL_Vector_cond1_5704	chr2	112265422	112265879	+	6.05044	NA	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	-664	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding
diff_RLAGL_Vector_cond1_8323	chr6	52200942	52201251	+	6.05026	NA	promoter-TSS (NR_015611)	promoter-TSS (NR_015611)	-28	NR_015611	72628	Mm.348030	NR_015611	ENSMUSG00000085696	Hoxaas3	2700086A05Rik	Hoxa cluster antisense RNA 3	ncRNA
diff_RLAGL_Vector_cond1_5173	chr19	45046573	45046942	+	6.05013	NA	promoter-TSS (NM_001195265)	promoter-TSS (NM_001195265)	-819	NM_001178012	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding
diff_RLAGL_Vector_cond1_142	chr1	39761205	39761439	+	6.05010	NA	Intergenic	Intergenic	-40333	NM_001145660	619289	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding
diff_RLAGL_Vector_cond1_4792	chr18	24708953	24709299	+	6.04967	NA	5' UTR (NM_001289655, exon 1 of 26)	5' UTR (NM_001289655, exon 1 of 26)	503	NM_001289654	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_3689	chr15	74075998	74076214	+	6.04806	NA	Intergenic	Intergenic	-236435	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding
diff_RLAGL_Vector_cond1_1396	chr10	122096586	122097778	+	6.04715	NA	promoter-TSS (NM_153059)	promoter-TSS (NM_153059)	-80	NM_153059	216395	Mm.236764	NM_153059		Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding
diff_RLAGL_Vector_cond1_6102	chr2	177840010	177840534	+	6.04555	NA	promoter-TSS (NM_001024849)	promoter-TSS (NM_001024849)	46	NM_001024849	329575	Mm.425123	NM_001024849		Gm14325	OTTMUSG00000016325	predicted gene 14325	protein-coding
diff_RLAGL_Vector_cond1_1282	chr10	100588942	100589389	+	6.04517	NA	promoter-TSS (NM_175128)	promoter-TSS (NM_175128)	94	NM_175128	68281	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding
diff_RLAGL_Vector_cond1_7913	chr5	110386880	110387190	+	6.04418	NA	promoter-TSS (NM_028596)	promoter-TSS (NM_028596)	92	NM_028596	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding
diff_RLAGL_Vector_cond1_7080	chr4	82019758	82020059	+	6.04284	NA	Intergenic	L1M5|LINE|L1	-45472	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA
diff_RLAGL_Vector_cond1_7759	chr5	66676432	66676756	+	6.04218	NA	promoter-TSS (NR_102714)	promoter-TSS (NR_102714)	-97	NR_102714	101202684	Mm.381468	NR_102714	ENSMUSG00000087601	Uchl1os	Gm16832|Uchl1as	ubiquitin carboxy-terminal hydrolase L1, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_2827	chr13	76484389	76484606	+	6.04207	NA	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	99536	NM_030174	78771	Mm.316249	NM_030174		Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding
diff_RLAGL_Vector_cond1_5152	chr19	38083004	38083227	+	6.04183	NA	Intergenic	Intergenic	-13964	NM_181748	107221	Mm.35288	NM_181748	ENSMUSG00000054200	Ffar4	AI552415|GT01|Gpr120|Gpr129|KPG_013|O3far1|Pgr4	free fatty acid receptor 4	protein-coding
diff_RLAGL_Vector_cond1_9488	chr8	40650958	40651201	+	6.04179	NA	Intergenic	Intergenic	-16287	NM_001040699	54384	Mm.294871	NM_019433		Mtmr7	-	myotubularin related protein 7	protein-coding
diff_RLAGL_Vector_cond1_7692	chr5	45857269	45857983	+	6.04133	NA	promoter-TSS (NM_178142)	promoter-TSS (NM_178142)	-86	NM_178142	209707	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding
diff_RLAGL_Vector_cond1_2419	chr12	105784383	105784694	+	6.04051	NA	promoter-TSS (NM_011112)	promoter-TSS (NM_011112)	-164	NM_011112	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding
diff_RLAGL_Vector_cond1_7659	chr5	39644562	39644843	+	6.03967	NA	promoter-TSS (NM_010474)	promoter-TSS (NM_010474)	-71	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_2355	chr12	88376773	88377004	+	6.03897	NA	non-coding (NR_045888, exon 1 of 3)	non-coding (NR_045888, exon 1 of 3)	435	NR_045888	71818	Mm.490789	NR_045888		3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA
diff_RLAGL_Vector_cond1_6389	chr3	73717635	73717963	+	6.03838	NA	Intergenic	Intergenic	-9384	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding
diff_RLAGL_Vector_cond1_2375	chr12	98258923	98259491	+	6.03810	NA	exon (NM_008079, exon 1 of 17)	exon (NM_008079, exon 1 of 17)	252	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding
diff_RLAGL_Vector_cond1_2408	chr12	103532045	103532569	+	6.03791	NA	promoter-TSS (NM_028980)	promoter-TSS (NM_028980)	-258	NM_028980	74521	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding
diff_RLAGL_Vector_cond1_975	chr10	32889894	32890422	+	6.03736	NA	promoter-TSS (NM_001025286)	promoter-TSS (NM_001025286)	-243	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
diff_RLAGL_Vector_cond1_8549	chr6	112362648	112362889	+	6.03595	NA	intron (NM_175525, intron 11 of 11)	intron (NM_175525, intron 11 of 11)	25255	NM_175525	243612	Mm.122653	NM_175525	ENSMUSG00000034387	Ssu2	D630042P16Rik|Fls485|Ssuh2	ssu-2 homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_7360	chr4	136733332	136733571	+	6.03578	NA	intron (NM_001290753, intron 3 of 15)	L2|LINE|L2	102561	NM_010142	13844	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding
diff_RLAGL_Vector_cond1_9569	chr8	61570688	61570889	+	6.03505	NA	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	20381	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding
diff_RLAGL_Vector_cond1_3224	chr14	76223134	76223393	+	6.03422	NA	Intergenic	MER90|LTR|ERV1	112372	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_6031	chr2	167733272	167733602	+	6.03390	NA	Intergenic	Intergenic	42260	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA
diff_RLAGL_Vector_cond1_8273	chr6	38848347	38848845	+	6.03291	NA	intron (NM_010433, intron 1 of 14)	MLT1C|LTR|ERVL-MaLR	-11285	NM_001136065	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding
diff_RLAGL_Vector_cond1_2825	chr13	76098530	76098771	+	6.03265	NA	promoter-TSS (NM_001081352)	promoter-TSS (NM_001081352)	10	NM_029847	77041	Mm.196399	NM_029847	ENSMUSG00000021592	Arsk	2810429K17Rik|4833414G15Rik	arylsulfatase K	protein-coding
diff_RLAGL_Vector_cond1_4942	chr18	69919120	69919343	+	6.03250	NA	Intergenic	Intergenic	-6328	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding
diff_RLAGL_Vector_cond1_10360	chr9	121352313	121352640	+	6.03237	NA	Intergenic	Intergenic	-14482	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding
diff_RLAGL_Vector_cond1_944	chr10	27222740	27223136	+	6.03189	NA	intron (NM_008481, intron 18 of 63)	intron (NM_008481, intron 18 of 63)	-166928	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
diff_RLAGL_Vector_cond1_4189	chr16	90275725	90275952	+	6.03120	NA	intron (NM_178923, intron 1 of 19)	intron (NM_178923, intron 1 of 19)	8587	NM_178923	224432	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding
diff_RLAGL_Vector_cond1_6926	chr4	36014176	36014586	+	6.03089	NA	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-169177	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_8670	chr6	133553459	133553752	+	6.03051	NA	Intergenic	RLTR1F_Mm|LTR|ERVK	24416	NM_001185040	545884	Mm.482064	NM_001185040		Gm5885	EG545884	predicted gene 5885	protein-coding
diff_RLAGL_Vector_cond1_6161	chr3	9609923	9610317	+	6.03032	NA	promoter-TSS (NM_133218)	promoter-TSS (NM_133218)	-35	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding
diff_RLAGL_Vector_cond1_6719	chr3	149338825	149339305	+	6.02969	NA	Intergenic	Intergenic	64328	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
diff_RLAGL_Vector_cond1_8646	chr6	128438506	128438857	+	6.02814	NA	promoter-TSS (NM_010219)	promoter-TSS (NM_010219)	-50	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_3667	chr15	67758408	67758607	+	6.02787	NA	Intergenic	Intergenic	500349	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
diff_RLAGL_Vector_cond1_316	chr1	84347848	84348267	+	6.02666	NA	Intergenic	B3A|SINE|B2	-63412	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3618	chr15	59652924	59653137	+	6.02608	NA	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	4376	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7968	chr5	122274880	122275083	+	6.02530	NA	Intergenic	Intergenic	-9417	NM_177242	320717	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8429	chr6	83422086	83422477	+	6.02520	NA	intron (NM_183138, intron 2 of 10)	intron (NM_183138, intron 2 of 10)	19397	NM_183138	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding
diff_RLAGL_Vector_cond1_2403	chr12	103281910	103282206	+	6.02477	NA	Intergenic	Intergenic	-32901	NM_001195726	100504156	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding
diff_RLAGL_Vector_cond1_3856	chr16	10642947	10643172	+	6.02423	NA	intron (NM_001204229, intron 17 of 22)	intron (NM_001204229, intron 17 of 22)	97720	NM_001204229	74374	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding
diff_RLAGL_Vector_cond1_6680	chr3	145656860	145657209	+	6.02400	NA	Intergenic	Intergenic	-7049	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding
diff_RLAGL_Vector_cond1_9574	chr8	62002228	62003161	+	6.02368	NA	intron (NM_001293783, intron 28 of 37)	RLTR43C|LTR|ERVK	74607	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding
diff_RLAGL_Vector_cond1_232	chr1	66901066	66901266	+	6.02348	NA	Intergenic	L1MD2|LINE|L1	34200	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_6393	chr3	75164919	75165216	+	6.02307	NA	Intergenic	Intergenic	-21295	NM_001310529	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding
diff_RLAGL_Vector_cond1_3627	chr15	61450322	61450543	+	6.02289	NA	Intergenic	Intergenic	324019	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA
diff_RLAGL_Vector_cond1_4425	chr17	43554619	43554908	+	6.02288	NA	Intergenic	Intergenic	-11124	NM_001254953	100043332	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding
diff_RLAGL_Vector_cond1_9559	chr8	57594182	57594505	+	6.02280	NA	intron (NM_144731, intron 1 of 11)	intron (NM_144731, intron 1 of 11)	-57410	NR_040698	100502619	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA
diff_RLAGL_Vector_cond1_8785	chr6	149309286	149309506	+	6.02240	NA	promoter-TSS (NM_026054)	promoter-TSS (NM_026054)	-18	NM_001289661	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding
diff_RLAGL_Vector_cond1_7248	chr4	118272107	118272494	+	6.02203	NA	intron (NM_011213, intron 3 of 32)	intron (NM_011213, intron 3 of 32)	19097	NM_011213	19268	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
diff_RLAGL_Vector_cond1_9349	chr8	5129377	5129769	+	6.02108	NA	Intergenic	Intergenic	-24341	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
diff_RLAGL_Vector_cond1_950	chr10	28387912	28388138	+	6.02046	NA	intron (NM_008983, intron 7 of 31)	intron (NM_008983, intron 7 of 31)	-280335	NM_001305663	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding
diff_RLAGL_Vector_cond1_6693	chr3	146567959	146568159	+	6.02026	NA	Intergenic	Intergenic	-29090	NM_009474	22262	Mm.10865	NM_009474		Uox	AI663847	urate oxidase	protein-coding
diff_RLAGL_Vector_cond1_571	chr1	151564481	151564684	+	6.01893	NA	Intergenic	Intergenic	-6791	NM_022018	63913	Mm.157700	NM_022018		Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding
diff_RLAGL_Vector_cond1_10301	chr9	110654017	110654400	+	6.01766	NA	promoter-TSS (NM_183276)	promoter-TSS (NM_183276)	-47	NM_183276	235627	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding
diff_RLAGL_Vector_cond1_2742	chr13	63092692	63092909	+	6.01730	NA	intron (NM_001289924, intron 5 of 16)	intron (NM_001289924, intron 5 of 16)	127907	NM_001289926	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|Aopep|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding
diff_RLAGL_Vector_cond1_10467	chrX	77433411	77433815	+	6.01677	NA	intron (NR_035475, intron 1 of 3)	CpG	42323	NR_035475	100316834		NR_035475	ENSMUSG00000088980	Mir669m-2	mmu-mir-669m-2	microRNA 669m-2	ncRNA
diff_RLAGL_Vector_cond1_8477	chr6	91156482	91156856	+	6.01611	NA	promoter-TSS (NM_144919)	promoter-TSS (NM_144919)	-146	NM_144919	232232	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding
diff_RLAGL_Vector_cond1_7318	chr4	132063094	132063500	+	6.01607	NA	intron (NM_183428, intron 1 of 20)	L2a|LINE|L2	8800	NM_183428	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding
diff_RLAGL_Vector_cond1_5545	chr2	70838810	70839038	+	6.01582	NA	Intergenic	Intergenic	-13444	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding
diff_RLAGL_Vector_cond1_9594	chr8	68494098	68494314	+	6.01570	NA	intron (NM_001252623, intron 4 of 10)	MER68B|LTR|ERVL	125747	NR_038189	73609	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA
diff_RLAGL_Vector_cond1_852	chr10	6022715	6022965	+	6.01534	NA	Intergenic	B3A|SINE|B2	-100440	NM_001161822	56533	Mm.44606	NM_019958	ENSMUSG00000019775	Rgs17	6430507P11Rik|Rgsz2	regulator of G-protein signaling 17	protein-coding
diff_RLAGL_Vector_cond1_10115	chr9	61808550	61808808	+	6.01514	NA	Intergenic	Intergenic	105831	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding
diff_RLAGL_Vector_cond1_7200	chr4	109676375	109676775	+	6.01480	NA	promoter-TSS (NM_007983)	promoter-TSS (NM_007983)	-52	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding
diff_RLAGL_Vector_cond1_8302	chr6	46937183	46937477	+	6.01460	NA	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-307066	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_2049	chr12	7738145	7738471	+	6.01433	NA	Intergenic	Intergenic	-239369	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding
diff_RLAGL_Vector_cond1_3132	chr14	52039318	52039581	+	6.01366	NA	Intergenic	Intergenic	-3340	NM_001001808	258420	Mm.377946	NM_001001808	ENSMUSG00000044286	Olfr221	MOR205-1|MOR205-2|Olfr1514|Olfr221-ps1	olfactory receptor 221	protein-coding
diff_RLAGL_Vector_cond1_7550	chr5	17247793	17248111	+	6.01229	NA	Intergenic	Intergenic	-228170	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding
diff_RLAGL_Vector_cond1_5541	chr2	69061977	69062192	+	6.01114	NA	intron (NM_172856, intron 6 of 9)	intron (NM_172856, intron 6 of 9)	-73716	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding
diff_RLAGL_Vector_cond1_2927	chr13	110725934	110726161	+	6.01089	NA	Intergenic	Intergenic	-177452	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA
diff_RLAGL_Vector_cond1_1903	chr11	103312097	103312297	+	6.00997	NA	Intergenic	CpG	32505	NM_133715	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding
diff_RLAGL_Vector_cond1_8128	chr6	3091958	3092272	+	6.00895	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-196404	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo
diff_RLAGL_Vector_cond1_4380	chr17	33828947	33829304	+	6.00885	NA	intron (NM_023202, intron 2 of 3)	intron (NM_023202, intron 2 of 3)	4480	NR_103514	66416	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding
diff_RLAGL_Vector_cond1_5980	chr2	158397249	158397457	+	6.00878	NA	Intergenic	RLTR27|LTR|ERVK	-12500	NM_001291138	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	9330195P16|AI507211|B230339M05Rik|mKIAA1219|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding
diff_RLAGL_Vector_cond1_9977	chr9	26924370	26924606	+	6.00849	NA	Intergenic	B1F|SINE|Alu	-1407	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding
diff_RLAGL_Vector_cond1_5172	chr19	44836564	44836827	+	6.00806	NA	promoter-TSS (NR_045315)	promoter-TSS (NR_045315)	-757	NR_045315	73322	Mm.250457	NR_045315	ENSMUSG00000092369	1700039E22Rik	-	RIKEN cDNA 1700039E22 gene	ncRNA
diff_RLAGL_Vector_cond1_2660	chr13	45173352	45173709	+	6.00775	NA	Intergenic	Intergenic	-171434	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_1014	chr10	40348588	40348792	+	6.00742	NA	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-618	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding
diff_RLAGL_Vector_cond1_2921	chr13	109440440	109440891	+	6.00708	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	115921	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
diff_RLAGL_Vector_cond1_7654	chr5	38117078	38117448	+	6.00587	NA	intron (NM_001289536, intron 5 of 9)	intron (NM_001289536, intron 5 of 9)	42204	NM_010942	18196	Mm.7414	NM_010942	ENSMUSG00000029126	Nsg1	Neep21|m234|p21	neuron specific gene family member 1	protein-coding
diff_RLAGL_Vector_cond1_675	chr1	172481665	172482247	+	6.00572	NA	promoter-TSS (NM_033608)	promoter-TSS (NM_033608)	-257	NM_001145800	93842	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding
diff_RLAGL_Vector_cond1_718	chr1	178406120	178406577	+	6.00571	NA	intron (NM_026626, intron 1 of 6)	CpG	467	NM_026626	68226	Mm.252132	NM_026626		Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding
diff_RLAGL_Vector_cond1_5882	chr2	144599762	144600130	+	6.00550	NA	promoter-TSS (NM_025314)	promoter-TSS (NM_025314)	-7	NM_025314	66044	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding
diff_RLAGL_Vector_cond1_2856	chr13	89384787	89385000	+	6.00376	NA	Intergenic	RLTR44B|LTR|ERVK	-155743	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding
diff_RLAGL_Vector_cond1_2283	chr12	67156984	67157270	+	6.00370	NA	intron (NM_207010, intron 1 of 15)	L1MA6|LINE|L1	65422	NM_207010	320772	Mm.227680	NM_207010		Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding
diff_RLAGL_Vector_cond1_3896	chr16	21644504	21644751	+	6.00337	NA	TTS (NM_001285894)	TTS (NM_001285894)	50038	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding
diff_RLAGL_Vector_cond1_816	chr1	192834709	192834928	+	6.00203	NA	Intergenic	CpG	-6887	NR_040468	73455	Mm.414869	NR_040468		1700065J18Rik	-	RIKEN cDNA 1700065J18 gene	ncRNA
diff_RLAGL_Vector_cond1_1900	chr11	103141358	103141577	+	6.00012	NA	Intergenic	Intergenic	8108	NM_027658	71059	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding
diff_RLAGL_Vector_cond1_10279	chr9	106892098	106892435	+	5.99985	NA	promoter-TSS (NM_029103)	promoter-TSS (NM_029103)	-328	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding
diff_RLAGL_Vector_cond1_5493	chr2	59637290	59637646	+	5.99919	NA	intron (NM_198294, intron 1 of 26)	MER44A|DNA|TcMar-Tigger	-9301	NM_001290659	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
diff_RLAGL_Vector_cond1_7428	chr4	145585171	145585459	+	5.99864	NA	Intergenic	Intergenic	-31831	NM_001205101	433801	Mm.276881	NM_001013808		Gm13212	OTTMUSG00000010965	predicted gene 13212	protein-coding
diff_RLAGL_Vector_cond1_7887	chr5	104571283	104571805	+	5.99858	NA	Intergenic	RMER13A|LTR|ERVK	45809	NR_030673	100662	Mm.319836	NR_030673	ENSMUSG00000097392	D930016D06Rik	100041172|1110004B06Rik|AI451450|Gm3179	RIKEN cDNA D930016D06 gene	ncRNA
diff_RLAGL_Vector_cond1_1694	chr11	62277983	62278293	+	5.99810	NA	intron (NM_027198, intron 1 of 4)	intron (NM_027198, intron 1 of 4)	3257	NM_027198	69747	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding
diff_RLAGL_Vector_cond1_6425	chr3	84269829	84270078	+	5.99772	NA	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	830	NM_001271725	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding
diff_RLAGL_Vector_cond1_8239	chr6	29916743	29917018	+	5.99690	NA	promoter-TSS (NM_001037740)	promoter-TSS (NM_001037740)	-133	NM_001037740	320609	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_3862	chr16	10873688	10873893	+	5.99688	NA	Intergenic	Intergenic	38731	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_5622	chr2	91194585	91194790	+	5.99601	NA	intron (NM_001177730, intron 1 of 9)	intron (NM_001177730, intron 1 of 9)	348	NM_013839	22259	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding
diff_RLAGL_Vector_cond1_8463	chr6	89885031	89885279	+	5.99545	NA	Intergenic	ORR1A3|LTR|ERVL-MaLR	-8119	NM_053227	113854	Mm.377151	NM_053227	ENSMUSG00000068234	Vmn1r44	V1RA10|V1rb11|V1rb4	vomeronasal 1 receptor 44	protein-coding
diff_RLAGL_Vector_cond1_2617	chr13	30107840	30108089	+	5.99530	NA	Intergenic	ID_B1|SINE|B4	-28526	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_6019	chr2	165653523	165653880	+	5.99491	NA	intron (NM_001271962, intron 1 of 15)	intron (NM_001271962, intron 1 of 15)	-1597	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	eyes absent 2 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2769	chr13	67375600	67375948	+	5.99479	NA	promoter-TSS (NM_001001186)	promoter-TSS (NM_001001186)	-11	NM_001001186	408065	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding
diff_RLAGL_Vector_cond1_5091	chr19	12796182	12796416	+	5.99323	NA	promoter-TSS (NM_053009)	promoter-TSS (NM_053009)	-176	NM_053009	109910	Mm.290924	NM_053009	ENSMUSG00000024695	Zfp91	9130014I08Rik|A530054C17Rik|AL024263|AW545902|Pzf|Zfp-91	zinc finger protein 91	protein-coding
diff_RLAGL_Vector_cond1_4549	chr17	66233648	66233939	+	5.99320	NA	Intergenic	Intergenic	110273	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding
diff_RLAGL_Vector_cond1_3935	chr16	32745880	32746142	+	5.99208	NA	intron (NM_080457, intron 1 of 26)	intron (NM_080457, intron 1 of 26)	10125	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding
diff_RLAGL_Vector_cond1_7407	chr4	142791639	142791982	+	5.98964	NA	Intergenic	Intergenic	344352	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA
diff_RLAGL_Vector_cond1_5337	chr2	21958411	21958616	+	5.98929	NA	Intergenic	Intergenic	-268990	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding
diff_RLAGL_Vector_cond1_5505	chr2	61711459	61712021	+	5.98826	NA	promoter-TSS (NM_021526)	promoter-TSS (NM_021526)	46	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding
diff_RLAGL_Vector_cond1_8347	chr6	57535437	57535922	+	5.98813	NA	promoter-TSS (NM_175523)	promoter-TSS (NM_175523)	-253	NM_175523	243382	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding
diff_RLAGL_Vector_cond1_10477	chrX	85768698	85768908	+	5.98807	NA	intron (NM_001294138, intron 1 of 19)	intron (NM_001294138, intron 1 of 19)	8016	NM_001294138	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding
diff_RLAGL_Vector_cond1_2600	chr13	25562837	25563106	+	5.98791	NA	Intergenic	Intergenic	-292975	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding
diff_RLAGL_Vector_cond1_9597	chr8	69184130	69184400	+	5.98622	NA	Intergenic	Intergenic	-24781	NM_001013379	234358	Mm.334577	NM_001013379		Zfp930	-	zinc finger protein 930	protein-coding
diff_RLAGL_Vector_cond1_1424	chr10	127289225	127289432	+	5.98560	NA	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-557	NM_033072	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding
diff_RLAGL_Vector_cond1_7349	chr4	134853312	134853591	+	5.98531	NA	promoter-TSS (NM_025382)	promoter-TSS (NM_025382)	-106	NM_025382	66146	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61	transmembrane protein 57	protein-coding
diff_RLAGL_Vector_cond1_3185	chr14	66296958	66297160	+	5.98512	NA	promoter-TSS (NR_038077)	promoter-TSS (NR_038077)	34	NM_029979	66854	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding
diff_RLAGL_Vector_cond1_5402	chr2	33887495	33887787	+	5.98352	NA	5' UTR (NM_175184, exon 1 of 10)	5' UTR (NM_175184, exon 1 of 10)	305	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding
diff_RLAGL_Vector_cond1_6263	chr3	38684382	38684730	+	5.98345	NA	Intergenic	Intergenic	-199740	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding
diff_RLAGL_Vector_cond1_7178	chr4	105364534	105364753	+	5.98340	NA	Intergenic	Intergenic	207296	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding
diff_RLAGL_Vector_cond1_9337	chr8	3822308	3822507	+	5.98321	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-19046	NR_024198	19785		NR_024198		Rprl3	RPRH4|Rmrp4	ribonuclease P RNA-like 3	ncRNA
diff_RLAGL_Vector_cond1_10560	chrX	139794497	139794725	+	5.98310	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-6197	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding
diff_RLAGL_Vector_cond1_1204	chr10	84576188	84576530	+	5.98215	NA	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	-588	NM_146008	216198	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding
diff_RLAGL_Vector_cond1_2799	chr13	70842219	70842482	+	5.98208	NA	promoter-TSS (NM_172053)	promoter-TSS (NM_172053)	-540	NM_172053	271127	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding
diff_RLAGL_Vector_cond1_3537	chr15	39943450	39943816	+	5.98197	NA	exon (NM_172814, exon 1 of 7)	exon (NM_172814, exon 1 of 7)	124	NM_172814	239393	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding
diff_RLAGL_Vector_cond1_5362	chr2	26503429	26503856	+	5.98189	NA	promoter-TSS (NR_132655)	promoter-TSS (NR_132655)	180	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding
diff_RLAGL_Vector_cond1_3324	chr14	104435694	104436054	+	5.97963	NA	Intergenic	Intergenic	32125	NM_011143	18996	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_5868	chr2	142739404	142739604	+	5.97907	NA	intron (NM_001081133, intron 17 of 25)	intron (NM_001081133, intron 17 of 25)	161960	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
diff_RLAGL_Vector_cond1_7535	chr5	9265939	9266205	+	5.97851	NA	promoter-TSS (NM_172706)	promoter-TSS (NM_172706)	-121	NM_172706	231014	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding
diff_RLAGL_Vector_cond1_1260	chr10	94489472	94489822	+	5.97795	NA	Intergenic	Intergenic	-25210	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding
diff_RLAGL_Vector_cond1_4502	chr17	56079453	56079688	+	5.97793	NA	promoter-TSS (NM_001304785)	promoter-TSS (NM_001304785)	-61	NM_001304785	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding
diff_RLAGL_Vector_cond1_2998	chr14	10822055	10822380	+	5.97766	NA	intron (NM_001308285, intron 2 of 9)	RLTR10D2|LTR|ERVK	83664	NR_131139	547334	Mm.434606	NR_131139	ENSMUSG00000089833	Fhitos	Gm16542	fragile histidine triad gene, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_4379	chr17	33824597	33824935	+	5.97751	NA	promoter-TSS (NM_016844)	promoter-TSS (NM_016844)	121	NR_103514	66416	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding
diff_RLAGL_Vector_cond1_2394	chr12	102327569	102327831	+	5.97697	NA	intron (NM_001161365, intron 3 of 9)	intron (NM_001161365, intron 3 of 9)	44059	NM_001161365	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding
diff_RLAGL_Vector_cond1_518	chr1	137141373	137141707	+	5.97643	NA	Intergenic	Lx8b|LINE|L1	-181092	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding
diff_RLAGL_Vector_cond1_5164	chr19	42090148	42090494	+	5.97614	NA	promoter-TSS (NM_145501)	promoter-TSS (NM_145501)	-114	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding
diff_RLAGL_Vector_cond1_802	chr1	191277754	191278007	+	5.97482	NA	Intergenic	Intergenic	40238	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding
diff_RLAGL_Vector_cond1_7492	chr4	155249715	155250037	+	5.97475	NA	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	-90	NR_033802	67513	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding
diff_RLAGL_Vector_cond1_5888	chr2	145233598	145233825	+	5.97468	NA	Intergenic	Intergenic	-8900	NM_053195	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding
diff_RLAGL_Vector_cond1_9973	chr9	25251664	25252226	+	5.97466	NA	promoter-TSS (NM_009859)	promoter-TSS (NM_009859)	-494	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding
diff_RLAGL_Vector_cond1_10213	chr9	90114160	90114365	+	5.97459	NA	intron (NM_024431, intron 1 of 11)	CpG	558	NM_024431	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding
diff_RLAGL_Vector_cond1_1981	chr11	117568712	117569064	+	5.97439	NA	Intergenic	Intergenic	-42359	NR_015489	78403	Mm.212543	NR_015489		2900041M22Rik	-	RIKEN cDNA 2900041M22 gene	ncRNA
diff_RLAGL_Vector_cond1_2435	chr12	108554527	108554770	+	5.97360	NA	promoter-TSS (NM_001163394)	promoter-TSS (NM_001163394)	-72	NM_001163394	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding
diff_RLAGL_Vector_cond1_8769	chr6	146409889	146410144	+	5.97351	NA	intron (NM_019923, intron 9 of 56)	B3|SINE|B2	92207	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding
diff_RLAGL_Vector_cond1_9711	chr8	91801980	91802185	+	5.97327	NA	promoter-TSS (NM_001253822)	promoter-TSS (NM_001253822)	-428	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding
diff_RLAGL_Vector_cond1_4726	chr18	7235319	7235563	+	5.97311	NA	intron (NM_001081393, intron 11 of 20)	intron (NM_001081393, intron 11 of 20)	62460	NM_001081393	74934	Mm.107918	NM_001081393	ENSMUSG00000061802	Armc4	4930463I21Rik|b2b227.1Clo|b2b643Clo	armadillo repeat containing 4	protein-coding
diff_RLAGL_Vector_cond1_10237	chr9	95955140	95955376	+	5.97270	NA	intron (NM_001311130, intron 1 of 41)	intron (NM_001311130, intron 1 of 41)	498	NM_001311130	24127	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding
diff_RLAGL_Vector_cond1_3082	chr14	34310424	34310746	+	5.97208	NA	promoter-TSS (NM_029389)	promoter-TSS (NM_029389)	-82	NM_029389	75698	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding
diff_RLAGL_Vector_cond1_2230	chr12	51044961	51045294	+	5.97179	NA	intron (NR_126468, intron 3 of 4)	intron (NR_126468, intron 3 of 4)	39971	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
diff_RLAGL_Vector_cond1_842	chr10	4107700	4107975	+	5.97172	NA	intron (NM_172308, intron 26 of 27)	intron (NM_172308, intron 26 of 27)	134762	NM_172308	270685	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding
diff_RLAGL_Vector_cond1_10113	chr9	61583217	61583976	+	5.97006	NA	Intergenic	Intergenic	211230	NM_009389	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3, homolog of Drosophila E(spl)	protein-coding
diff_RLAGL_Vector_cond1_7111	chr4	88550189	88550410	+	5.96945	NA	Intergenic	Lx7|LINE|L1	7946	NM_206870	242517	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A|OTTMUSG00000007655	interferon alpha 15	protein-coding
diff_RLAGL_Vector_cond1_1537	chr11	21091059	21091331	+	5.96823	NA	promoter-TSS (NM_023324)	promoter-TSS (NM_023324)	-129	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding
diff_RLAGL_Vector_cond1_9121	chr7	90442665	90443103	+	5.96795	NA	non-coding (NR_073438, exon 1 of 4)	non-coding (NR_073438, exon 1 of 4)	103	NM_145151	233490	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding
diff_RLAGL_Vector_cond1_4416	chr17	40837412	40837637	+	5.96722	NA	intron (NM_011269, intron 9 of 9)	B1_Mur2|SINE|Alu	26375	NM_011269	19743	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding
diff_RLAGL_Vector_cond1_1270	chr10	96981111	96981800	+	5.96696	NA	Intergenic	Intergenic	-54313	NR_045358	75301	Mm.108650	NR_045358		4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA
diff_RLAGL_Vector_cond1_5215	chr19	54206811	54207171	+	5.96691	NA	Intergenic	Intergenic	161809	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
diff_RLAGL_Vector_cond1_5917	chr2	148850977	148851398	+	5.96690	NA	promoter-TSS (NM_029960)	promoter-TSS (NM_029960)	-253	NM_029960	77705	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding
diff_RLAGL_Vector_cond1_7289	chr4	126202732	126203094	+	5.96622	NA	promoter-TSS (NM_146153)	promoter-TSS (NM_146153)	-203	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding
diff_RLAGL_Vector_cond1_10547	chrX	134058977	134059238	+	5.96414	NA	promoter-TSS (NM_001290399)	promoter-TSS (NM_001290399)	-69	NM_001290398	108062	Mm.67938	NM_133196	ENSMUSG00000031256	Cstf2	C630034J23Rik|Cstf64|mir-3112	cleavage stimulation factor, 3' pre-RNA subunit 2	protein-coding
diff_RLAGL_Vector_cond1_5456	chr2	50066263	50066540	+	5.96412	NA	promoter-TSS (NR_033304)	promoter-TSS (NR_033304)	-28	NM_177139	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_4289	chr17	17624362	17624715	+	5.96404	NA	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-49	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding
diff_RLAGL_Vector_cond1_8916	chr7	37624269	37624652	+	5.96369	NA	intron (NM_172385, intron 3 of 5)	intron (NM_172385, intron 3 of 5)	145292	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding
diff_RLAGL_Vector_cond1_10079	chr9	50849298	50849540	+	5.96305	NA	Intergenic	Intergenic	-7505	NM_001286553	73699	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding
diff_RLAGL_Vector_cond1_1784	chr11	81915974	81916466	+	5.96276	NA	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	52176	NM_001034013	11418	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding
diff_RLAGL_Vector_cond1_1382	chr10	120557893	120558101	+	5.96254	NA	Intergenic	Intergenic	-81062	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding
diff_RLAGL_Vector_cond1_59	chr1	16240913	16241397	+	5.96252	NA	intron (NM_025303, intron 12 of 13)	intron (NM_025303, intron 12 of 13)	135273	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding
diff_RLAGL_Vector_cond1_8384	chr6	66954160	66954394	+	5.96239	NA	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	57386	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
diff_RLAGL_Vector_cond1_4722	chr18	6745057	6745350	+	5.96192	NA	Intergenic	Intergenic	-19964	NM_181070	19330	Mm.132802	NM_181070		Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_6071	chr2	172440283	172440820	+	5.96138	NA	promoter-TSS (NM_025542)	promoter-TSS (NM_025542)	-27	NM_025542	66404	Mm.25157	NM_025542	ENSMUSG00000027502	Rtfdc1	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417	replication termination factor 2 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_6266	chr3	40893767	40894353	+	5.95978	NA	promoter-TSS (NM_026622)	promoter-TSS (NM_026622)	-217	NM_026622	269423	Mm.32373	NM_026622	ENSMUSG00000037818	3110057O12Rik	2310068E01Rik|4732404H23|AI645591	RIKEN cDNA 3110057O12 gene	protein-coding
diff_RLAGL_Vector_cond1_2211	chr12	45047190	45047443	+	5.95907	NA	intron (NM_144552, intron 1 of 5)	intron (NM_144552, intron 1 of 5)	27167	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
diff_RLAGL_Vector_cond1_7123	chr4	89875721	89875948	+	5.95883	NA	Intergenic	IAPLTR2_Mm|LTR|ERVK	187636	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding
diff_RLAGL_Vector_cond1_2447	chr12	110344285	110344565	+	5.95879	NA	Intergenic	L1MEf|LINE|L1	65195	NM_172119	107585	Mm.154427	NM_172119	ENSMUSG00000075707	Dio3	-	deiodinase, iodothyronine type III	protein-coding
diff_RLAGL_Vector_cond1_10053	chr9	44673178	44673378	+	5.95877	NA	promoter-TSS (NM_021481)	promoter-TSS (NM_021481)	45	NM_021481	58866	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding
diff_RLAGL_Vector_cond1_2169	chr12	34997746	34997962	+	5.95784	NA	Intergenic	Intergenic	13093	NM_029294	75456	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding
diff_RLAGL_Vector_cond1_1304	chr10	106585688	106586044	+	5.95741	NA	intron (NR_131026, intron 3 of 6)	intron (NR_131026, intron 3 of 6)	15189	NR_131027	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA
diff_RLAGL_Vector_cond1_1550	chr11	23665681	23665894	+	5.95733	NA	promoter-TSS (NM_028304)	promoter-TSS (NM_028304)	113	NM_001033654	74467	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding
diff_RLAGL_Vector_cond1_1102	chr10	69212989	69213359	+	5.95664	NA	promoter-TSS (NM_001252638)	promoter-TSS (NM_001252638)	-20	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9006	chr7	62400261	62400512	+	5.95511	NA	Intergenic	Intergenic	19753	NM_011746	22652	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding
diff_RLAGL_Vector_cond1_2695	chr13	56588194	56588669	+	5.95469	NA	Intergenic	Intergenic	-21172	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding
diff_RLAGL_Vector_cond1_8804	chr7	6286132	6286625	+	5.95448	NA	promoter-TSS (NM_001024928)	promoter-TSS (NM_001024928)	-202	NM_001024928	384763	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding
diff_RLAGL_Vector_cond1_1863	chr11	98428378	98428727	+	5.95441	NA	intron (NM_001003817, intron 14 of 26)	MIR|SINE|MIR	10436	NM_025559	103742	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding
diff_RLAGL_Vector_cond1_6262	chr3	38579867	38580118	+	5.95330	NA	Intergenic	Intergenic	-95176	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding
diff_RLAGL_Vector_cond1_5147	chr19	35244249	35244491	+	5.95207	NA	Intergenic	Lx8|LINE|L1	322012	NM_183046	240641	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|B130024C23|C330014J10Rik|Mphosph1|magoo	kinesin family member 20B	protein-coding
diff_RLAGL_Vector_cond1_7488	chr4	155019374	155019771	+	5.95205	NA	Intergenic	Intergenic	-8588	NM_175556	269615	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding
diff_RLAGL_Vector_cond1_1036	chr10	52022406	52022647	+	5.95111	NA	promoter-TSS (NM_001300957)	promoter-TSS (NM_001300957)	24	NM_153786	215031	Mm.87237	NM_153786	ENSMUSG00000049641	Vgll2	C130057C21Rik|VITO-1|Vito1|vgl-2	vestigial like 2 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7144	chr4	97486392	97487058	+	5.95058	NA	Intergenic	Intergenic	-95218	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
diff_RLAGL_Vector_cond1_5512	chr2	62784540	62784918	+	5.95047	NA	intron (NM_133207, intron 7 of 15)	L2a|LINE|L2	120402	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding
diff_RLAGL_Vector_cond1_9630	chr8	76438017	76438281	+	5.94947	NA	Intergenic	Lx7|LINE|L1	462024	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
diff_RLAGL_Vector_cond1_1378	chr10	119525794	119526039	+	5.94895	NA	intron (NM_133442, intron 1 of 21)	MTD|LTR|ERVL-MaLR	71882	NM_001277292	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_84	chr1	21499899	21500156	+	5.94884	NA	intron (NM_001310477, intron 5 of 12)	intron (NM_001310477, intron 5 of 12)	116471	NM_001113187	98582	Mm.326336	NM_001113187	ENSMUSG00000085079	Khdc1b	AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c	KH domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_1856	chr11	97302265	97302709	+	5.94802	NA	Intergenic	Intergenic	-13229	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding
diff_RLAGL_Vector_cond1_5106	chr19	18731199	18731400	+	5.94801	NA	Intergenic	Intergenic	18063	NM_177640	225995	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding
diff_RLAGL_Vector_cond1_3756	chr15	89070713	89071008	+	5.94796	NA	TTS (NM_001002005)	TTS (NM_001002005)	4994	NR_040417	69120	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA
diff_RLAGL_Vector_cond1_6005	chr2	163202971	163203196	+	5.94722	NA	Intergenic	CpG	-22371	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding
diff_RLAGL_Vector_cond1_10598	chrX	160802659	160802917	+	5.94674	NA	intron (NM_001024624, intron 18 of 18)	intron (NM_001024624, intron 18 of 18)	34775	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding
diff_RLAGL_Vector_cond1_7623	chr5	33053274	33053480	+	5.94660	NA	Intergenic	Intergenic	34561	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_8308	chr6	48601861	48602062	+	5.94644	NA	Intergenic	CpG	8078	NM_001079902	58887	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding
diff_RLAGL_Vector_cond1_4720	chr18	5819774	5819973	+	5.94631	NA	Intergenic	Intergenic	-227436	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA
diff_RLAGL_Vector_cond1_3773	chr15	93398222	93398629	+	5.94601	NA	promoter-TSS (NM_175363)	promoter-TSS (NM_175363)	-39	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding
diff_RLAGL_Vector_cond1_3932	chr16	32608694	32609095	+	5.94555	NA	promoter-TSS (NM_011638)	promoter-TSS (NM_011638)	-2	NM_011638	22042	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding
diff_RLAGL_Vector_cond1_7630	chr5	34169497	34169731	+	5.94381	NA	promoter-TSS (NM_146159)	promoter-TSS (NM_146159)	-88	NM_001289803	272158	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding
diff_RLAGL_Vector_cond1_1341	chr10	112138643	112138946	+	5.94361	NA	Intergenic	RLTR46A2|LTR|ERVK	-24827	NM_001310675	353025	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding
diff_RLAGL_Vector_cond1_549	chr1	146323053	146323261	+	5.94341	NA	Intergenic	RLTR9D|LTR|ERVK	-172509	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_10287	chr9	107963788	107963991	+	5.94321	NA	intron (NM_011634, intron 10 of 14)	B1_Mur4|SINE|Alu	-11678	NM_023738	74153	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding
diff_RLAGL_Vector_cond1_8796	chr7	4501769	4502077	+	5.94216	NA	promoter-TSS (NM_029834)	promoter-TSS (NM_029834)	-243	NM_029834	232807	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding
diff_RLAGL_Vector_cond1_1720	chr11	69418980	69419234	+	5.94114	NA	Intergenic	Intergenic	-5432	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding
diff_RLAGL_Vector_cond1_6465	chr3	95027369	95027588	+	5.94097	NA	Intergenic	Intergenic	-12240	NM_030074	78266	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding
diff_RLAGL_Vector_cond1_4237	chr17	5295649	5295959	+	5.94067	NA	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	122963	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding
diff_RLAGL_Vector_cond1_3834	chr15	102350699	102351119	+	5.93999	NA	promoter-TSS (NM_153416)	promoter-TSS (NM_153416)	-150	NM_153416	223921	Mm.352946	NM_153416	ENSMUSG00000036678	Aaas	AAA|ADRACALA|D030041N15Rik|GL003	achalasia, adrenocortical insufficiency, alacrimia	protein-coding
diff_RLAGL_Vector_cond1_9549	chr8	56323327	56323650	+	5.93803	NA	Intergenic	Intergenic	28936	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding
diff_RLAGL_Vector_cond1_3383	chr14	121417643	121417873	+	5.93667	NA	Intergenic	Intergenic	-38528	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding
diff_RLAGL_Vector_cond1_2339	chr12	84785105	84785388	+	5.93566	NA	exon (NM_013589, exon 33 of 35)	exon (NM_013589, exon 33 of 35)	11976	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10283	chr9	107533666	107533948	+	5.93480	NA	promoter-TSS (NM_019704)	promoter-TSS (NM_019704)	-138	NM_019704	56395	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding
diff_RLAGL_Vector_cond1_379	chr1	97607235	97607629	+	5.93437	NA	Intergenic	Lx9|LINE|L1	54586	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding
diff_RLAGL_Vector_cond1_7186	chr4	106582855	106583077	+	5.93431	NA	intron (NM_053272, intron 6 of 8)	intron (NM_053272, intron 6 of 8)	21928	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding
diff_RLAGL_Vector_cond1_8874	chr7	27178302	27178583	+	5.93316	NA	intron (NM_029391, intron 1 of 7)	intron (NM_029391, intron 1 of 7)	441	NM_029391	19342	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_9435	chr8	26656761	26657112	+	5.93299	NA	Intergenic	Intergenic	167487	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA
diff_RLAGL_Vector_cond1_4650	chr17	84956926	84957384	+	5.93271	NA	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	268	NR_027929	68531	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA
diff_RLAGL_Vector_cond1_7993	chr5	130079414	130079625	+	5.93189	NA	5' UTR (NM_001130476, exon 1 of 6)	5' UTR (NM_001130476, exon 1 of 6)	149	NM_001130476	22021	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_1191	chr10	82520658	82521003	+	5.93183	NA	Intergenic	Intergenic	-28212	NM_001255990	432480	Mm.280394	NM_001255990	ENSMUSG00000094186	Gm1553	Lcrn	predicted gene 1553	protein-coding
diff_RLAGL_Vector_cond1_1500	chr11	11461649	11462248	+	5.93131	NA	intron (NM_001185153, intron 1 of 7)	intron (NM_001185153, intron 1 of 7)	471	NM_015785	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding
diff_RLAGL_Vector_cond1_6548	chr3	116251714	116252136	+	5.93057	NA	exon (NM_022427, exon 2 of 2)	exon (NM_022427, exon 2 of 2)	1559	NM_022427	64378	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding
diff_RLAGL_Vector_cond1_1848	chr11	96075525	96075994	+	5.92983	NA	promoter-TSS (NM_007506)	promoter-TSS (NM_007506)	-65	NM_007506	11951	Mm.258	NM_007506		Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding
diff_RLAGL_Vector_cond1_2270	chr12	59219214	59219638	+	5.92968	NA	promoter-TSS (NM_001033156)	promoter-TSS (NM_001033156)	57	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
diff_RLAGL_Vector_cond1_7085	chr4	82643633	82643832	+	5.92904	NA	Intergenic	Intergenic	-137953	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding
diff_RLAGL_Vector_cond1_41	chr1	9848314	9848723	+	5.92823	NA	intron (NM_001037759, intron 1 of 16)	CpG	237	NM_001037759	170755	Mm.336410	NM_133220		Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding
diff_RLAGL_Vector_cond1_1640	chr11	50352239	50352442	+	5.92798	NA	Intergenic	Intergenic	5539	NR_030529	100049547		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA
diff_RLAGL_Vector_cond1_4847	chr18	42511347	42511607	+	5.92751	NA	promoter-TSS (NM_001039474)	promoter-TSS (NM_001039474)	-10	NM_001039474	56070	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding
diff_RLAGL_Vector_cond1_4960	chr18	73572118	73573047	+	5.92682	NA	promoter-TSS (NM_001039214)	promoter-TSS (NM_001039214)	-123	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 homolog C (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_6049	chr2	169929960	169930255	+	5.92570	NA	Intergenic	Intergenic	33080	NR_131974	446211	Mm.266854	NR_131974		AY702102	STDP1	cDNA sequence AY702102	ncRNA
diff_RLAGL_Vector_cond1_632	chr1	164260083	164260391	+	5.92516	NA	intron (NM_054087, intron 2 of 5)	intron (NM_054087, intron 2 of 5)	11191	NM_001276455	116914	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding
diff_RLAGL_Vector_cond1_6572	chr3	123437673	123437919	+	5.92455	NA	Intergenic	Intergenic	-9117	NM_008939	19142	Mm.9431	NM_008939	ENSMUSG00000027978	Prss12	Bssp-3|motopsin	protease, serine 12 neurotrypsin (motopsin)	protein-coding
diff_RLAGL_Vector_cond1_9432	chr8	26119211	26119555	+	5.92430	NA	promoter-TSS (NM_029965)	promoter-TSS (NM_029965)	3	NM_029965	77733	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding
diff_RLAGL_Vector_cond1_7843	chr5	96620283	96620742	+	5.92343	NA	intron (NM_175473, intron 20 of 73)	intron (NM_175473, intron 20 of 73)	-172873	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding
diff_RLAGL_Vector_cond1_5056	chr19	5713822	5714086	+	5.92264	NA	intron (NM_001114597, intron 12 of 18)	intron (NM_001114597, intron 12 of 18)	9478	NM_010609	16530	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding
diff_RLAGL_Vector_cond1_341	chr1	88645687	88645943	+	5.92245	NA	Intergenic	ERVB7_2-LTR_MM|LTR|ERVK	56376	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding
diff_RLAGL_Vector_cond1_10067	chr9	48495215	48495508	+	5.92219	NA	promoter-TSS (NM_144948)	promoter-TSS (NM_144948)	18	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding
diff_RLAGL_Vector_cond1_6363	chr3	66985597	66986189	+	5.92162	NA	intron (NM_025822, intron 1 of 9)	CpG	221	NM_025822	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding
diff_RLAGL_Vector_cond1_9442	chr8	27261101	27261317	+	5.92124	NA	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	882	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_7309	chr4	129793886	129794268	+	5.92069	NA	Intergenic	Intergenic	-26402	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding
diff_RLAGL_Vector_cond1_7034	chr4	66403945	66404167	+	5.91961	NA	exon (NM_019514, exon 1 of 22)	exon (NM_019514, exon 1 of 22)	427	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
diff_RLAGL_Vector_cond1_6626	chr3	133234932	133235310	+	5.91534	NA	promoter-TSS (NM_029953)	promoter-TSS (NM_029953)	-232	NM_029953	77669	Mm.98630	NM_029953	ENSMUSG00000040969	Arhgef38	9130221D24Rik|D630013G24Rik	Rho guanine nucleotide exchange factor (GEF) 38	protein-coding
diff_RLAGL_Vector_cond1_7590	chr5	24602925	24603209	+	5.91494	NA	Intergenic	Intergenic	-1065	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding
diff_RLAGL_Vector_cond1_7566	chr5	19618048	19618279	+	5.91475	NA	intron (NM_001170746, intron 1 of 22)	RLTR22_Mur|LTR|ERVK	-289355	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_9146	chr7	100536769	100537097	+	5.91409	NA	promoter-TSS (NM_183270)	promoter-TSS (NM_183270)	-167	NM_183270	68185	Mm.228995	NM_183270		Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding
diff_RLAGL_Vector_cond1_4993	chr18	80001331	80001531	+	5.91372	NA	Intergenic	Intergenic	-45464	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding
diff_RLAGL_Vector_cond1_2675	chr13	52339288	52339487	+	5.91308	NA	Intergenic	Intergenic	191449	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding
diff_RLAGL_Vector_cond1_7689	chr5	45449962	45450180	+	5.91224	NA	exon (NM_024236, exon 1 of 7)	exon (NM_024236, exon 1 of 7)	158	NM_024236	110391	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding
diff_RLAGL_Vector_cond1_1577	chr11	30772079	30772537	+	5.91169	NA	intron (NM_134013, intron 1 of 46)	CpG	533	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding
diff_RLAGL_Vector_cond1_9706	chr8	90877146	90877431	+	5.91138	NA	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	48453	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding
diff_RLAGL_Vector_cond1_5579	chr2	79635016	79635412	+	5.91083	NA	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-211	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding
diff_RLAGL_Vector_cond1_9659	chr8	80711034	80711332	+	5.91078	NA	intron (NM_053124, intron 15 of 23)	intron (NM_053124, intron 15 of 23)	28276	NM_053124	93762	Mm.246803	NM_053124		Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding
diff_RLAGL_Vector_cond1_1202	chr10	84376436	84376679	+	5.91003	NA	intron (NM_001004363, intron 6 of 6)	intron (NM_001004363, intron 6 of 6)	63914	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding
diff_RLAGL_Vector_cond1_4430	chr17	44148413	44148688	+	5.90931	NA	Intergenic	Intergenic	-40022	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding
diff_RLAGL_Vector_cond1_5679	chr2	106694290	106694538	+	5.90930	NA	intron (NM_001143683, intron 1 of 6)	CpG	955	NM_001143683	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_4742	chr18	9449917	9450531	+	5.90847	NA	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-74	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding
diff_RLAGL_Vector_cond1_46	chr1	10257266	10257480	+	5.90826	NA	Intergenic	Intergenic	-24703	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding
diff_RLAGL_Vector_cond1_999	chr10	38295723	38296068	+	5.90765	NA	Intergenic	Intergenic	120121	NR_131035	75877	Mm.402094	NR_131035		4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA
diff_RLAGL_Vector_cond1_6833	chr4	12906716	12907267	+	5.90730	NA	intron (NM_173746, intron 1 of 4)	CpG	154	NM_001171801	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
diff_RLAGL_Vector_cond1_7019	chr4	63052330	63052573	+	5.90716	NA	intron (NM_028326, intron 1 of 14)	intron (NM_028326, intron 1 of 14)	86877	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding
diff_RLAGL_Vector_cond1_9011	chr7	63858560	63858800	+	5.90571	NA	Intergenic	Intergenic	-58177	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding
diff_RLAGL_Vector_cond1_8716	chr6	139913551	139913764	+	5.90475	NA	intron (NM_207683, intron 20 of 23)	intron (NM_207683, intron 20 of 23)	72212	NM_011084	18705	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	protein-coding
diff_RLAGL_Vector_cond1_3440	chr15	7604897	7605152	+	5.90381	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-205024	NM_001301332	14573	Mm.4679	NM_010275		Gdnf	AI385739	glial cell line derived neurotrophic factor	protein-coding
diff_RLAGL_Vector_cond1_6533	chr3	109309462	109309720	+	5.90350	NA	Intergenic	Intergenic	-31092	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding
diff_RLAGL_Vector_cond1_2180	chr12	36381388	36381655	+	5.90301	NA	promoter-TSS (NM_001289504)	promoter-TSS (NM_001289504)	71	NM_178629	75847	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding
diff_RLAGL_Vector_cond1_1586	chr11	31824663	31825178	+	5.90225	NA	promoter-TSS (NR_102314)	promoter-TSS (NR_102314)	-373	NR_102312	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA
diff_RLAGL_Vector_cond1_2167	chr12	33429479	33429929	+	5.90219	NA	promoter-TSS (NM_172253)	promoter-TSS (NM_172253)	80	NM_172253	28071	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding
diff_RLAGL_Vector_cond1_1381	chr10	120112572	120113152	+	5.90146	NA	exon (NM_080446, exon 1 of 13)	exon (NM_080446, exon 1 of 13)	103	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding
diff_RLAGL_Vector_cond1_9181	chr7	108814893	108815130	+	5.90063	NA	Intergenic	Intergenic	10986	NM_146726	258721	Mm.377655	NM_146726	ENSMUSG00000066241	Olfr514	MOR268-1	olfactory receptor 514	protein-coding
diff_RLAGL_Vector_cond1_1928	chr11	109611813	109612145	+	5.89868	NA	promoter-TSS (NM_145940)	promoter-TSS (NM_145940)	-590	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding
diff_RLAGL_Vector_cond1_1736	chr11	72435156	72435465	+	5.89848	NA	promoter-TSS (NM_027819)	promoter-TSS (NM_027819)	-216	NM_027819	71522	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding
diff_RLAGL_Vector_cond1_7962	chr5	119588412	119588626	+	5.89842	NA	Intergenic	MIR|SINE|MIR	-8161	NR_045702	100993	Mm.381453	NR_045702	ENSMUSG00000087516	AW549542	-	expressed sequence AW549542	ncRNA
diff_RLAGL_Vector_cond1_6169	chr3	14533796	14534527	+	5.89795	NA	intron (NM_028915, intron 1 of 18)	intron (NM_028915, intron 1 of 18)	373	NM_001163579	71710	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_6529	chr3	108911404	108911801	+	5.89782	NA	5' UTR (NM_025845, exon 1 of 6)	5' UTR (NM_025845, exon 1 of 6)	102	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding
diff_RLAGL_Vector_cond1_3671	chr15	68468792	68469022	+	5.89753	NA	Intergenic	Intergenic	-127618	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA
diff_RLAGL_Vector_cond1_8272	chr6	38551997	38552240	+	5.89708	NA	intron (NM_001170849, intron 1 of 7)	CpG	674	NM_001170848	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_7468	chr4	151823065	151823303	+	5.89706	NA	intron (NM_001195565, intron 3 of 3)	intron (NM_001195565, intron 3 of 3)	38584	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding
diff_RLAGL_Vector_cond1_5927	chr2	150748941	150749362	+	5.89680	NA	promoter-TSS (NM_172117)	promoter-TSS (NM_172117)	70	NM_172117	12497	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding
diff_RLAGL_Vector_cond1_5611	chr2	85245670	85245917	+	5.89639	NA	Intergenic	L1M4a2|LINE|L1	-49094	NM_001033346	241528	Mm.291095	NM_001033346	ENSMUSG00000075224	Lrrc55	A330097E02Rik|Gm351	leucine rich repeat containing 55	protein-coding
diff_RLAGL_Vector_cond1_6097	chr2	176708244	176708748	+	5.89639	NA	intron (NM_001099327, intron 1 of 4)	RMER17B|LTR|ERVK	143	NM_001099327	100043387	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	OTTMUSG00000016251	predicted gene 14305	protein-coding
diff_RLAGL_Vector_cond1_5646	chr2	101472617	101473078	+	5.89558	NA	Intergenic	Intergenic	-151901	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
diff_RLAGL_Vector_cond1_5785	chr2	130870930	130871131	+	5.89536	NA	Intergenic	Intergenic	-30885	NM_029432	228602	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding
diff_RLAGL_Vector_cond1_421	chr1	113308056	113308277	+	5.89403	NA	Intergenic	Intergenic	-1443248	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
diff_RLAGL_Vector_cond1_9586	chr8	66486419	66486797	+	5.89385	NA	promoter-TSS (NM_025465)	promoter-TSS (NM_025465)	-101	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_3415	chr15	4026487	4026768	+	5.89344	NA	non-coding (NR_028266, exon 1 of 2)	non-coding (NR_028266, exon 1 of 2)	199	NM_024188	67041	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding
diff_RLAGL_Vector_cond1_4541	chr17	64961880	64962190	+	5.89309	NA	Intergenic	Intergenic	194924	NR_105051	101202683	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA
diff_RLAGL_Vector_cond1_3010	chr14	14544177	14544392	+	5.89303	NA	Intergenic	Intergenic	-158741	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding
diff_RLAGL_Vector_cond1_1857	chr11	97428103	97428485	+	5.89191	NA	Intergenic	Intergenic	-21866	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding
diff_RLAGL_Vector_cond1_9765	chr8	108915519	108915889	+	5.89131	NA	intron (NM_007496, intron 5 of 9)	intron (NM_007496, intron 5 of 9)	-21156	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA
diff_RLAGL_Vector_cond1_7909	chr5	109996126	109996493	+	5.89074	NA	promoter-TSS (NM_145563)	promoter-TSS (NM_145563)	-218	NM_145563	69504	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding
diff_RLAGL_Vector_cond1_10345	chr9	119426597	119426973	+	5.89054	NA	intron (NM_001313757, intron 1 of 10)	intron (NM_001313757, intron 1 of 10)	-18138	NM_172456	208194	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding
diff_RLAGL_Vector_cond1_10490	chrX	95166280	95166734	+	5.88951	NA	promoter-TSS (NM_001290385)	promoter-TSS (NM_001290385)	32	NM_001290385	236915	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding
diff_RLAGL_Vector_cond1_3498	chr15	27432920	27433151	+	5.88945	NA	Intergenic	Intergenic	-33642	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding
diff_RLAGL_Vector_cond1_8938	chr7	42642306	42642721	+	5.88938	NA	promoter-TSS (NM_001242388)	promoter-TSS (NM_001242388)	91	NM_001242388	208111	Mm.387841	NM_001034857		9830147E19Rik	C330019L16Rik	RIKEN cDNA 9830147E19 gene	protein-coding
diff_RLAGL_Vector_cond1_7485	chr4	154471859	154472101	+	5.88740	NA	intron (NM_001291029, intron 3 of 15)	intron (NM_001291029, intron 3 of 15)	164387	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA
diff_RLAGL_Vector_cond1_6428	chr3	85025095	85025389	+	5.88705	NA	Intergenic	Intergenic	-59662	NM_001040461	654362	Mm.466598	NM_001040461		Dear1	Dear|Despr	dual endothelin 1/angiotensin II receptor 1	protein-coding
diff_RLAGL_Vector_cond1_5833	chr2	137323722	137323984	+	5.88660	NA	Intergenic	Intergenic	-207333	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding
diff_RLAGL_Vector_cond1_4279	chr17	15830988	15831204	+	5.88602	NA	Intergenic	CpG	-4510	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding
diff_RLAGL_Vector_cond1_7234	chr4	116483548	116483906	+	5.88585	NA	Intergenic	Intergenic	-19546	NM_008641	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding
diff_RLAGL_Vector_cond1_1032	chr10	50592250	50593035	+	5.88553	NA	promoter-TSS (NM_198007)	promoter-TSS (NM_198007)	-27	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding
diff_RLAGL_Vector_cond1_7460	chr4	150815142	150815536	+	5.88455	NA	Intergenic	Intergenic	39610	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA
diff_RLAGL_Vector_cond1_6463	chr3	94649267	94649519	+	5.88418	NA	intron (NM_011656, intron 1 of 12)	intron (NM_011656, intron 1 of 12)	9479	NM_011656	22156	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding
diff_RLAGL_Vector_cond1_645	chr1	166360245	166360448	+	5.88340	NA	Intergenic	Intergenic	-18821	NM_030245	27878	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding
diff_RLAGL_Vector_cond1_9474	chr8	36457437	36457826	+	5.88222	NA	Intergenic	Intergenic	-31560	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding
diff_RLAGL_Vector_cond1_4074	chr16	63641664	63641994	+	5.88196	NA	intron (NM_010140, intron 5 of 16)	intron (NM_010140, intron 5 of 16)	222328	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
diff_RLAGL_Vector_cond1_9640	chr8	77949684	77949940	+	5.88191	NA	Intergenic	Intergenic	-225360	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding
diff_RLAGL_Vector_cond1_5342	chr2	22876667	22876957	+	5.87994	NA	Intergenic	Intergenic	-18710	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding
diff_RLAGL_Vector_cond1_4606	chr17	76624087	76624513	+	5.87963	NA	Intergenic	Intergenic	763277	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA
diff_RLAGL_Vector_cond1_9698	chr8	88521110	88521731	+	5.87923	NA	promoter-TSS (NM_027280)	promoter-TSS (NM_027280)	76	NM_027280	93960	Mm.30219	NM_027280	ENSMUSG00000031661	Nkd1	2810434J10Rik|9030215G15Rik|Nkd	naked cuticle 1 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1658	chr11	53840046	53840407	+	5.87922	NA	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	19030	NR_033332	622459	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115|OTTMUSG00000005650	predicted gene 12216	ncRNA
diff_RLAGL_Vector_cond1_4322	chr17	24141538	24141747	+	5.87793	NA	promoter-TSS (NM_001080773)	promoter-TSS (NM_001080773)	-48	NM_011062	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding
diff_RLAGL_Vector_cond1_6290	chr3	51810823	51811067	+	5.87791	NA	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	149766	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
diff_RLAGL_Vector_cond1_8193	chr6	17633899	17634179	+	5.87771	NA	Intergenic	RMER15|LTR|ERVL	-3059	NM_007604	12343	Mm.392504	NM_007604		Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding
diff_RLAGL_Vector_cond1_5542	chr2	69135584	69135865	+	5.87769	NA	promoter-TSS (NM_181547)	promoter-TSS (NM_181547)	-76	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding
diff_RLAGL_Vector_cond1_3220	chr14	75219470	75220052	+	5.87754	NA	intron (NM_008879, intron 14 of 16)	intron (NM_008879, intron 14 of 16)	-22526	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding
diff_RLAGL_Vector_cond1_6475	chr3	97255880	97256378	+	5.87751	NA	Intergenic	Intergenic	-28765	NM_029933	77578	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding
diff_RLAGL_Vector_cond1_6462	chr3	94309972	94310228	+	5.87745	NA	promoter-TSS (NM_029431)	promoter-TSS (NM_029431)	-32	NM_029431	75778	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding
diff_RLAGL_Vector_cond1_4181	chr16	88710805	88711207	+	5.87688	NA	Intergenic	MIR|SINE|MIR	-3044	NM_027155	69661	Mm.58243	NM_027155	ENSMUSG00000050704	2310061N02Rik	-	RIKEN cDNA 2310061N02 gene	protein-coding
diff_RLAGL_Vector_cond1_3525	chr15	35155442	35155939	+	5.87563	NA	5' UTR (NM_019635, exon 1 of 11)	5' UTR (NM_019635, exon 1 of 11)	116	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding
diff_RLAGL_Vector_cond1_6932	chr4	39088173	39088626	+	5.87548	NA	Intergenic	RMER6D|LTR|ERVK	-361894	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
diff_RLAGL_Vector_cond1_4324	chr17	24393617	24393916	+	5.87495	NA	intron (NM_001039581, intron 18 of 31)	intron (NM_001039581, intron 18 of 31)	20747	NR_033554	654822	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA
diff_RLAGL_Vector_cond1_1295	chr10	105523327	105523639	+	5.87411	NA	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	50996	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
diff_RLAGL_Vector_cond1_6082	chr2	173737296	173737679	+	5.87381	NA	promoter-TSS (NM_019806)	promoter-TSS (NM_019806)	-84	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding
diff_RLAGL_Vector_cond1_7902	chr5	109336876	109337133	+	5.87378	NA	intron (NM_001104627, intron 1 of 5)	RLTR22_Mus|LTR|ERVK	6623	NM_001104627	384220	Mm.469880	NM_001104627	ENSMUSG00000092080	Vmn2r16	EG384220	vomeronasal 2, receptor 16	protein-coding
diff_RLAGL_Vector_cond1_6744	chr3	154572386	154572612	+	5.87329	NA	Intergenic	Intergenic	-24212	NM_009968	12972	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding
diff_RLAGL_Vector_cond1_1253	chr10	91171520	91171788	+	5.87315	NA	promoter-TSS (NM_001080129)	promoter-TSS (NM_001080129)	-35	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
diff_RLAGL_Vector_cond1_2761	chr13	67060635	67061048	+	5.87255	NA	intron (NM_001166218, intron 1 of 3)	intron (NM_001166218, intron 1 of 3)	329	NM_001166218	78251	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding
diff_RLAGL_Vector_cond1_3099	chr14	40956432	40956631	+	5.87216	NA	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-8322	NM_001316748	52588	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding
diff_RLAGL_Vector_cond1_9070	chr7	75369493	75369694	+	5.87196	NA	Intergenic	Intergenic	-60331	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding
diff_RLAGL_Vector_cond1_5447	chr2	48841673	48841978	+	5.87194	NA	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	27716	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
diff_RLAGL_Vector_cond1_9570	chr8	61591179	61591405	+	5.87152	NA	promoter-TSS (NM_001293774)	promoter-TSS (NM_001293774)	-123	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding
diff_RLAGL_Vector_cond1_7561	chr5	18359964	18360449	+	5.86925	NA	5' UTR (NM_010305, exon 1 of 8)	5' UTR (NM_010305, exon 1 of 8)	207	NM_010305	14677	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding
diff_RLAGL_Vector_cond1_6339	chr3	60886847	60887080	+	5.86906	NA	Intergenic	Intergenic	-115822	NM_001282016	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding
diff_RLAGL_Vector_cond1_900	chr10	16978814	16979096	+	5.86823	NA	intron (NR_038020, intron 4 of 8)	intron (NR_038020, intron 4 of 8)	116827	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA
diff_RLAGL_Vector_cond1_3810	chr15	99965154	99965355	+	5.86806	NA	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-4811	NM_001080948	207214	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding
diff_RLAGL_Vector_cond1_9532	chr8	48843286	48843804	+	5.86805	NA	Intergenic	CpG	-168855	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_9377	chr8	11555652	11556193	+	5.86767	NA	promoter-TSS (NM_011919)	promoter-TSS (NM_011919)	-141	NM_001302457	26356	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding
diff_RLAGL_Vector_cond1_10320	chr9	115549024	115549304	+	5.86718	NA	Intergenic	Intergenic	167345	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA
diff_RLAGL_Vector_cond1_5723	chr2	115581572	115582138	+	5.86707	NA	5' UTR (NM_207264, exon 1 of 11)	5' UTR (NM_207264, exon 1 of 11)	139	NM_001145898	399568	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding
diff_RLAGL_Vector_cond1_3042	chr14	22126328	22126709	+	5.86584	NA	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	106806	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding
diff_RLAGL_Vector_cond1_10386	chr9	124410383	124410774	+	5.86444	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-12673	NR_027950	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA
diff_RLAGL_Vector_cond1_5013	chr18	82867848	82868047	+	5.86410	NA	Intergenic	Intergenic	12050	NR_125720	73985	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA
diff_RLAGL_Vector_cond1_5088	chr19	12488274	12488483	+	5.86389	NA	intron (NM_172442, intron 2 of 8)	intron (NM_172442, intron 2 of 8)	13618	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2317	chr12	76547828	76548116	+	5.86383	NA	promoter-TSS (NR_046044)	promoter-TSS (NR_046044)	-47	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA
diff_RLAGL_Vector_cond1_6452	chr3	91416123	91416356	+	5.86370	NA	Intergenic	Intergenic	-325434	NM_001101461	229550	Mm.98335	NM_001101461	ENSMUSG00000091175	9130204L05Rik	Gm127	RIKEN cDNA 9130204L05 gene	protein-coding
diff_RLAGL_Vector_cond1_9487	chr8	40641661	40641902	+	5.86275	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-6989	NM_001040699	54384	Mm.294871	NM_019433		Mtmr7	-	myotubularin related protein 7	protein-coding
diff_RLAGL_Vector_cond1_4036	chr16	55816074	55816583	+	5.86238	NA	exon (NM_001159395, exon 8 of 13)	exon (NM_001159395, exon 8 of 13)	5810	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding
diff_RLAGL_Vector_cond1_4933	chr18	67391438	67391684	+	5.86151	NA	intron (NM_026473, intron 2 of 3)	CpG-7052	830	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding
diff_RLAGL_Vector_cond1_5691	chr2	109917405	109917646	+	5.86059	NA	promoter-TSS (NM_172671)	promoter-TSS (NM_172671)	-122	NM_172671	107515	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding
diff_RLAGL_Vector_cond1_10190	chr9	83924958	83925289	+	5.86028	NA	promoter-TSS (NM_001305935)	promoter-TSS (NM_001305935)	-14	NM_001305935	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_753	chr1	184034241	184034608	+	5.85945	NA	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	-37	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
diff_RLAGL_Vector_cond1_8590	chr6	118455082	118455330	+	5.85913	NA	intron (NM_028335, intron 1 of 5)	CpG	300	NM_028335	72720	Mm.212572	NM_028335	ENSMUSG00000030145	Zfp248	2810037F07Rik|E130106N01Rik	zinc finger protein 248	protein-coding
diff_RLAGL_Vector_cond1_6984	chr4	53440242	53440876	+	5.85898	NA	5' UTR (NM_133891, exon 1 of 16)	5' UTR (NM_133891, exon 1 of 16)	146	NM_133891	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding
diff_RLAGL_Vector_cond1_4685	chr17	90088306	90088509	+	5.85698	NA	intron (NM_020252, intron 21 of 22)	intron (NM_020252, intron 21 of 22)	709166	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
diff_RLAGL_Vector_cond1_3764	chr15	91012852	91013132	+	5.85686	NA	intron (NM_001109042, intron 1 of 32)	MTC|LTR|ERVL-MaLR	36959	NM_016705	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding
diff_RLAGL_Vector_cond1_5293	chr2	14074008	14074283	+	5.85549	NA	promoter-TSS (NM_011484)	promoter-TSS (NM_011484)	33	NM_011484	20844	Mm.273174	NM_011484	ENSMUSG00000026718	Stam	STAM1	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	protein-coding
diff_RLAGL_Vector_cond1_8527	chr6	106769039	106769262	+	5.85538	NA	promoter-TSS (NM_027296)	promoter-TSS (NM_027296)	12	NM_001242358	70047	Mm.196332	NM_027296	ENSMUSG00000013736	Trnt1	2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat	tRNA nucleotidyl transferase, CCA-adding, 1	protein-coding
diff_RLAGL_Vector_cond1_6322	chr3	57583722	57583968	+	5.85474	NA	Intergenic	Intergenic	-7935	NM_001168281	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding
diff_RLAGL_Vector_cond1_4124	chr16	76958586	76958943	+	5.85464	NA	Intergenic	Intergenic	52117	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA
diff_RLAGL_Vector_cond1_2459	chr12	112644621	112644936	+	5.85457	NA	promoter-TSS (NM_013929)	promoter-TSS (NM_013929)	-50	NM_001161737	30954	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding
diff_RLAGL_Vector_cond1_9482	chr8	40019319	40019716	+	5.85455	NA	intron (NR_035426, intron 3 of 5)	intron (NR_035426, intron 3 of 5)	208270	NR_035426	100316806		NR_035426	ENSMUSG00000080653	Mir669e	Mirn669e|mmu-mir-669e	microRNA 669e	ncRNA
diff_RLAGL_Vector_cond1_7450	chr4	149776015	149776247	+	5.85439	NA	Intergenic	Intergenic	-1864	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding
diff_RLAGL_Vector_cond1_9124	chr7	90553460	90553683	+	5.85422	NA	Intergenic	L1MA4A|LINE|L1	-77576	NM_026734	68472	Mm.289791	NM_026734		Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding
diff_RLAGL_Vector_cond1_10553	chrX	135009135	135009455	+	5.85356	NA	promoter-TSS (NM_175446)	promoter-TSS (NM_175446)	-86	NM_175446	215693	Mm.336238	NM_175446	ENSMUSG00000052676	Zmat1	A230096A06|AW990744|B930008K04Rik	zinc finger, matrin type 1	protein-coding
diff_RLAGL_Vector_cond1_4910	chr18	62250173	62250430	+	5.85336	NA	Intergenic	Intergenic	-70320	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding
diff_RLAGL_Vector_cond1_10308	chr9	112213832	112214093	+	5.85311	NA	intron (NM_001177619, intron 1 of 10)	intron (NM_001177619, intron 1 of 10)	3299	NM_001177617	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding
diff_RLAGL_Vector_cond1_4085	chr16	66014899	66015128	+	5.85253	NA	Intergenic	Intergenic	199380	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9085	chr7	79148729	79149012	+	5.85238	NA	intron (NM_008594, intron 1 of 9)	CpG	190	NM_001045489	17304	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding
diff_RLAGL_Vector_cond1_3202	chr14	70520280	70520651	+	5.85219	NA	promoter-TSS (NM_009755)	promoter-TSS (NM_009755)	-205	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding
diff_RLAGL_Vector_cond1_7852	chr5	99728963	99729180	+	5.85164	NA	promoter-TSS (NR_030692)	promoter-TSS (NR_030692)	-11	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA
diff_RLAGL_Vector_cond1_7465	chr4	151044703	151045095	+	5.85130	NA	promoter-TSS (NM_001289878)	promoter-TSS (NM_001289878)	-234	NM_001289878	18628	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding
diff_RLAGL_Vector_cond1_9262	chr7	131967059	131967287	+	5.84838	NA	exon (NM_173410, exon 1 of 3)	exon (NM_173410, exon 1 of 3)	713	NM_173410	233919	Mm.208740	NM_173410		Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding
diff_RLAGL_Vector_cond1_3913	chr16	26371569	26372022	+	5.84736	NA	promoter-TSS (NM_016674)	promoter-TSS (NM_016674)	44	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding
diff_RLAGL_Vector_cond1_4313	chr17	22165479	22166303	+	5.84717	NA	promoter-TSS (NM_177596)	promoter-TSS (NM_177596)	86	NM_177596	210853	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding
diff_RLAGL_Vector_cond1_572	chr1	151754965	151755372	+	5.84689	NA	promoter-TSS (NM_001039644)	promoter-TSS (NM_001039644)	-206	NM_001311166	66967	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding
diff_RLAGL_Vector_cond1_5281	chr2	12380150	12380545	+	5.84625	NA	intron (NM_024185, intron 10 of 14)	intron (NM_024185, intron 10 of 14)	39113	NM_024185	66960	Mm.34059	NM_024185	ENSMUSG00000026767	Fam188a	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958	family with sequence similarity 188, member A	protein-coding
diff_RLAGL_Vector_cond1_5041	chr18	90510147	90510374	+	5.84564	NA	5' UTR (NM_198295, exon 1 of 16)	5' UTR (NM_198295, exon 1 of 16)	106	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_2723	chr13	60820517	60820778	+	5.84484	NA	Intergenic	Intergenic	-17803	NM_027344	70202	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding
diff_RLAGL_Vector_cond1_3695	chr15	75862069	75862338	+	5.84372	NA	promoter-TSS (NM_026960)	promoter-TSS (NM_026960)	-136	NM_026960	69146	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding
diff_RLAGL_Vector_cond1_9066	chr7	74497186	74497515	+	5.84318	NA	intron (NM_001038643, intron 2 of 10)	ORR1E|LTR|ERVL-MaLR	57430	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding
diff_RLAGL_Vector_cond1_1400	chr10	123197055	123197567	+	5.84300	NA	promoter-TSS (NM_027604)	promoter-TSS (NM_027604)	-292	NM_027604	14479	Mm.244209	NM_027604		Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding
diff_RLAGL_Vector_cond1_9007	chr7	62464227	62464580	+	5.84143	NA	5' UTR (NM_013788, exon 1 of 1)	5' UTR (NM_013788, exon 1 of 1)	107	NM_013788	27412	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding
diff_RLAGL_Vector_cond1_2333	chr12	84053813	84054012	+	5.84037	NA	exon (NM_134246, exon 2 of 4)	exon (NM_134246, exon 2 of 4)	1761	NM_134246	171281	Mm.202331	NM_134246	ENSMUSG00000021228	Acot3	AW108394|PTE-Ia|Pte2a	acyl-CoA thioesterase 3	protein-coding
diff_RLAGL_Vector_cond1_5477	chr2	55436773	55437099	+	5.83984	NA	5' UTR (NM_001304810, exon 2 of 3)	5' UTR (NM_001304810, exon 2 of 3)	966	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
diff_RLAGL_Vector_cond1_8267	chr6	37615457	37615681	+	5.83978	NA	Intergenic	RLTR33|LTR|ERVK	85396	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding
diff_RLAGL_Vector_cond1_10166	chr9	77910951	77911153	+	5.83937	NA	Intergenic	Intergenic	-6313	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding
diff_RLAGL_Vector_cond1_5603	chr2	85009339	85009591	+	5.83799	NA	intron (NM_145526, intron 8 of 11)	B1F2|SINE|Alu	21250	NM_016914	53856	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding
diff_RLAGL_Vector_cond1_6527	chr3	108287912	108288125	+	5.83761	NA	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	3954	NM_001271599	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding
diff_RLAGL_Vector_cond1_8008	chr5	132594780	132595032	+	5.83751	NA	Intergenic	ZP3AR|Satellite|Satellite	-52563	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
diff_RLAGL_Vector_cond1_4194	chr16	91542287	91542528	+	5.83737	NA	Intergenic	Intergenic	-4687	NM_008338	15980	Mm.249364	NM_008338		Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding
diff_RLAGL_Vector_cond1_2397	chr12	102621914	102622129	+	5.83673	NA	intron (NM_172584, intron 3 of 9)	MIRc|SINE|MIR	62999	NR_035457	100316812		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA
diff_RLAGL_Vector_cond1_7907	chr5	109751504	109752103	+	5.83672	NA	Intergenic	Intergenic	82339	NR_027964	667213	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213|ENSMUSG00000072761	zinc finger protein pseudogene	pseudo
diff_RLAGL_Vector_cond1_4149	chr16	84834736	84835058	+	5.83622	NA	promoter-TSS (NM_008065)	promoter-TSS (NM_008065)	101	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding
diff_RLAGL_Vector_cond1_2332	chr12	83921809	83922235	+	5.83576	NA	promoter-TSS (NR_073564)	promoter-TSS (NR_073564)	-88	NR_073564	18222	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	numb gene homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1635	chr11	48817082	48817416	+	5.83535	NA	5' UTR (NM_145377, exon 1 of 6)	5' UTR (NM_145377, exon 1 of 6)	142	NM_145377	211007	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding
diff_RLAGL_Vector_cond1_4065	chr16	62733657	62733930	+	5.83504	NA	Intergenic	Intergenic	52923	NM_178925	106338	Mm.26321	NM_178925		Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding
diff_RLAGL_Vector_cond1_9385	chr8	13785510	13785796	+	5.83502	NA	promoter-TSS (NM_025924)	promoter-TSS (NM_025924)	38	NM_025924	67031	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding
diff_RLAGL_Vector_cond1_8247	chr6	31165069	31165275	+	5.83288	NA	TTS (NR_110469)	TTS (NR_110469)	53302	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA
diff_RLAGL_Vector_cond1_5249	chr2	4365025	4365282	+	5.83158	NA	intron (NM_172475, intron 1 of 22)	MLT1A0|LTR|ERVL-MaLR	-35823	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding
diff_RLAGL_Vector_cond1_10219	chr9	92234961	92235319	+	5.83042	NA	Intergenic	Intergenic	-15054	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding
diff_RLAGL_Vector_cond1_10358	chr9	121312291	121312490	+	5.82867	NA	Intergenic	Intergenic	-35218	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding
diff_RLAGL_Vector_cond1_5609	chr2	85123907	85124108	+	5.82824	NA	Intergenic	Intergenic	-12353	NM_011784	23796	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding
diff_RLAGL_Vector_cond1_3262	chr14	86869594	86869794	+	5.82788	NA	intron (NM_019670, intron 20 of 27)	B3|SINE|B2	271420	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
diff_RLAGL_Vector_cond1_10017	chr9	37146449	37147569	+	5.82768	NA	intron (NM_148950, intron 1 of 11)	C-rich|Low_complexity|Low_complexity	313	NM_001029838	208076	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_7622	chr5	33018614	33018966	+	5.82712	NA	promoter-TSS (NM_011738)	promoter-TSS (NM_011738)	-26	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_387	chr1	98128708	98128949	+	5.82686	NA	Intergenic	MTD-int|LTR|ERVL-MaLR	-2639	NR_040439	69030	Mm.402692	NR_040439	ENSMUSG00000100182	1810006J02Rik	-	RIKEN cDNA 1810006J02 gene	ncRNA
diff_RLAGL_Vector_cond1_8037	chr5	135879815	135880019	+	5.82677	NA	Intergenic	Intergenic	-8002	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding
diff_RLAGL_Vector_cond1_6884	chr4	24897785	24898441	+	5.82676	NA	promoter-TSS (NM_026742)	promoter-TSS (NM_026742)	30	NM_026742	68493	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding
diff_RLAGL_Vector_cond1_4845	chr18	42262203	42262429	+	5.82584	NA	promoter-TSS (NM_134137)	promoter-TSS (NM_134137)	-245	NM_134137	107045	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding
diff_RLAGL_Vector_cond1_3604	chr15	55906731	55907031	+	5.82548	NA	promoter-TSS (NM_016667)	promoter-TSS (NM_016667)	68	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding
diff_RLAGL_Vector_cond1_10306	chr9	111689953	111690321	+	5.82480	NA	promoter-TSS (NM_016853)	promoter-TSS (NM_016853)	79	NM_016853	20840	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding
diff_RLAGL_Vector_cond1_10579	chrX	152327347	152327713	+	5.82438	NA	promoter-TSS (NR_040270)	promoter-TSS (NR_040270)	-37	NR_040270	72997	Mm.254833	NR_040269		Kantr	2810454L23Rik|2900056M20Rik|Spasm	Kdm5c adjacent non-coding transcript	ncRNA
diff_RLAGL_Vector_cond1_1413	chr10	125877424	125877717	+	5.82434	NA	Intergenic	Intergenic	-88649	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
diff_RLAGL_Vector_cond1_9303	chr7	139441784	139442064	+	5.82324	NA	intron (NM_001127363, intron 1 of 15)	L1MCa|LINE|L1	52815	NM_183144	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding
diff_RLAGL_Vector_cond1_4543	chr17	65884774	65885178	+	5.82303	NA	promoter-TSS (NM_001198949)	promoter-TSS (NM_001198949)	-53	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_1570	chr11	29645564	29645766	+	5.82193	NA	Intergenic	Intergenic	-47233	NM_194053	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding
diff_RLAGL_Vector_cond1_5389	chr2	31974268	31974570	+	5.82185	NA	promoter-TSS (NM_172268)	promoter-TSS (NM_172268)	-31	NM_172268	227720	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding
diff_RLAGL_Vector_cond1_1427	chr10	127522300	127522522	+	5.82039	NA	promoter-TSS (NM_028230)	promoter-TSS (NM_028230)	33	NM_001252316	108037	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding
diff_RLAGL_Vector_cond1_4642	chr17	83705733	83705992	+	5.81990	NA	promoter-TSS (NM_054082)	promoter-TSS (NM_054082)	-301	NM_054082	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding
diff_RLAGL_Vector_cond1_8080	chr5	142440451	142440819	+	5.81960	NA	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-23296	NM_172725	231855	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding
diff_RLAGL_Vector_cond1_7351	chr4	134955859	134956166	+	5.81958	NA	Intergenic	Intergenic	25032	NM_026780	68592	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_4117	chr16	76358347	76358567	+	5.81953	NA	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	14592	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_8479	chr6	91527339	91527539	+	5.81890	NA	Intergenic	Intergenic	11404	NM_026309	67678	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_6639	chr3	136836967	136837177	+	5.81880	NA	intron (NM_001293622, intron 2 of 12)	intron (NM_001293622, intron 2 of 12)	167006	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding
diff_RLAGL_Vector_cond1_547	chr1	146316449	146317043	+	5.81793	NA	Intergenic	RLTR13C1|LTR|ERVK	-178920	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_4672	chr17	87797457	87797714	+	5.81767	NA	5' UTR (NM_199251, exon 1 of 2)	5' UTR (NM_199251, exon 1 of 2)	409	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding
diff_RLAGL_Vector_cond1_7347	chr4	134591639	134591893	+	5.81745	NA	intron (NM_207237, intron 3 of 11)	intron (NM_207237, intron 3 of 11)	-23915	NR_105829	102465216		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA
diff_RLAGL_Vector_cond1_6331	chr3	59531244	59531473	+	5.81719	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-187102	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding
diff_RLAGL_Vector_cond1_10015	chr9	36808049	36808619	+	5.81684	NA	Intergenic	Intergenic	-10941	NM_001199494	13663	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding
diff_RLAGL_Vector_cond1_5419	chr2	39190733	39191009	+	5.81656	NA	promoter-TSS (NM_178778)	promoter-TSS (NM_178778)	-141	NM_178778	320271	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding
diff_RLAGL_Vector_cond1_5123	chr19	24972622	24972900	+	5.81623	NA	Intergenic	Intergenic	-11145	NM_146097	226043	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2896	chr13	101478516	101478901	+	5.81601	NA	Intergenic	Intergenic	-81128	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA
diff_RLAGL_Vector_cond1_5924	chr2	150362526	150363086	+	5.81556	NA	promoter-TSS (NM_027017)	promoter-TSS (NM_027017)	-41	NM_027017	69277	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding
diff_RLAGL_Vector_cond1_3877	chr16	16560205	16560634	+	5.81531	NA	promoter-TSS (NM_139232)	promoter-TSS (NM_139232)	-200	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_1541	chr11	21571831	21572384	+	5.81461	NA	promoter-TSS (NM_008618)	promoter-TSS (NM_008618)	-173	NM_001316675	17449	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding
diff_RLAGL_Vector_cond1_6670	chr3	144720481	144720714	+	5.81406	NA	promoter-TSS (NM_019464)	promoter-TSS (NM_019464)	-262	NM_001282037	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding
diff_RLAGL_Vector_cond1_7621	chr5	32863440	32863844	+	5.81406	NA	promoter-TSS (NM_001170567)	promoter-TSS (NM_001170567)	-79	NM_001170567	277854	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_1915	chr11	106084049	106084563	+	5.81357	NA	promoter-TSS (NM_011947)	promoter-TSS (NM_011947)	-596	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding
diff_RLAGL_Vector_cond1_774	chr1	187020058	187020277	+	5.81307	NA	Intergenic	Intergenic	52751	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding
diff_RLAGL_Vector_cond1_10485	chrX	94122935	94123152	+	5.81267	NA	intron (NM_001044386, intron 1 of 8)	CpG	364	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
diff_RLAGL_Vector_cond1_7923	chr5	112597940	112598197	+	5.81211	NA	Intergenic	Intergenic	-8072	NR_045396	67325	Mm.490791	NR_045396	ENSMUSG00000097962	1700034G24Rik	-	RIKEN cDNA 1700034G24 gene	ncRNA
diff_RLAGL_Vector_cond1_391	chr1	103489257	103489766	+	5.81144	NA	Intergenic	RLTR13C3|LTR|ERVK	-1279308	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
diff_RLAGL_Vector_cond1_3538	chr15	40130927	40131299	+	5.81089	NA	Intergenic	L1MB7|LINE|L1	-3252	NM_001256056	328531	Mm.60703	NM_001256056		9330182O14Rik	-	RIKEN cDNA 9330182O14 gene	protein-coding
diff_RLAGL_Vector_cond1_9340	chr8	4258794	4259139	+	5.81085	NA	TTS (NM_011592)	TTS (NM_011592)	308	NM_183315	330695	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding
diff_RLAGL_Vector_cond1_9501	chr8	44318228	44318561	+	5.80946	NA	Intergenic	Intergenic	-618903	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding
diff_RLAGL_Vector_cond1_5377	chr2	30556462	30556743	+	5.80936	NA	Intergenic	Intergenic	-38442	NM_030137	78617	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding
diff_RLAGL_Vector_cond1_730	chr1	180175712	180176042	+	5.80880	NA	intron (NM_001163290, intron 4 of 14)	intron (NM_001163290, intron 4 of 14)	17608	NM_001163290	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Adck3	4632432J16Rik|AI462003|Cabc1|mKIAA0451	aarF domain containing kinase 3	protein-coding
diff_RLAGL_Vector_cond1_7002	chr4	58498835	58499039	+	5.80745	NA	intron (NM_010336, intron 2 of 3)	intron (NM_010336, intron 2 of 3)	466	NM_001290486	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding
diff_RLAGL_Vector_cond1_6510	chr3	104992828	104993069	+	5.80665	NA	Intergenic	Intergenic	-31239	NM_009520	22414	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding
diff_RLAGL_Vector_cond1_5372	chr2	29964349	29964601	+	5.80636	NA	Intergenic	Intergenic	-1085	NM_001309460	20740	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding
diff_RLAGL_Vector_cond1_3151	chr14	57525747	57526005	+	5.80634	NA	intron (NM_145837, intron 2 of 2)	intron (NM_145837, intron 2 of 2)	1047	NM_145837	239114	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D|Il27a	interleukin 17D	protein-coding
diff_RLAGL_Vector_cond1_370	chr1	93801773	93802132	+	5.80499	NA	promoter-TSS (NM_001105667)	promoter-TSS (NM_001105667)	-18	NM_023136	21915	Mm.250332	NM_023136	ENSMUSG00000026281	Dtymk	AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk	deoxythymidylate kinase	protein-coding
diff_RLAGL_Vector_cond1_7276	chr4	124708530	124708864	+	5.80498	NA	TTS (NM_010213)	TTS (NM_010213)	-6164	NM_029157	75062	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding
diff_RLAGL_Vector_cond1_3824	chr15	101246248	101246483	+	5.80467	NA	Intergenic	CpG	-20481	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding
diff_RLAGL_Vector_cond1_2396	chr12	102453570	102454082	+	5.80462	NA	Intergenic	Intergenic	-14129	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding
diff_RLAGL_Vector_cond1_1453	chr11	3387594	3387932	+	5.80439	NA	intron (NM_010718, intron 2 of 15)	MIR|SINE|MIR	-16371	NM_173053	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding
diff_RLAGL_Vector_cond1_10587	chrX	153940191	153940545	+	5.80285	NA	Intergenic	RLTR26D_MM|LTR|ERVK	72272	NM_001201358	667256	Mm.46855	NM_001201358	ENSMUSG00000094577	4921511M17Rik	-	RIKEN cDNA 4921511M17 gene	protein-coding
diff_RLAGL_Vector_cond1_9524	chr8	47988087	47988314	+	5.80229	NA	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	2351	NM_133791	52357	Mm.235074	NM_133791		Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_8500	chr6	97104491	97104709	+	5.80218	NA	Intergenic	MTD|LTR|ERVL-MaLR	-44189	NM_177233	320701	Mm.131700	NM_177233	ENSMUSG00000046500	Fam19a4	C130034I18Rik|Fam19a4 Tafa-4|Tafa-4	family with sequence similarity 19, member A4	protein-coding
diff_RLAGL_Vector_cond1_3439	chr15	7263857	7264185	+	5.80120	NA	intron (NM_178748, intron 6 of 21)	intron (NM_178748, intron 6 of 21)	123479	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding
diff_RLAGL_Vector_cond1_7666	chr5	41707617	41707835	+	5.80038	NA	promoter-TSS (NM_001310592)	promoter-TSS (NM_001310592)	-35	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_9812	chr8	119344702	119344907	+	5.80028	NA	intron (NM_024219, intron 1 of 3)	intron (NM_024219, intron 1 of 3)	266	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_1639	chr11	50325671	50326165	+	5.79911	NA	promoter-TSS (NM_007597)	promoter-TSS (NM_007597)	-245	NM_001110499	12330	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding
diff_RLAGL_Vector_cond1_3156	chr14	59550975	59551195	+	5.79891	NA	Intergenic	Intergenic	46874	NM_001168538	71891	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4137	chr16	79082519	79082833	+	5.79848	NA	intron (NM_008941, intron 3 of 27)	intron (NM_008941, intron 3 of 27)	8421	NM_008941	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding
diff_RLAGL_Vector_cond1_8457	chr6	89353294	89353528	+	5.79846	NA	intron (NM_008881, intron 3 of 31)	intron (NM_008881, intron 3 of 31)	9202	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding
diff_RLAGL_Vector_cond1_3197	chr14	69965651	69965856	+	5.79687	NA	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-111692	NM_001289925	13655	Mm.103737	NM_018781		Egr3	Pilot	early growth response 3	protein-coding
diff_RLAGL_Vector_cond1_6696	chr3	146787581	146787793	+	5.79675	NA	intron (NM_011100, intron 1 of 9)	ORR1A2|LTR|ERVL-MaLR	-6271	NM_001164200	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding
diff_RLAGL_Vector_cond1_4047	chr16	57166692	57166966	+	5.79604	NA	intron (NM_023175, intron 1 of 9)	intron (NM_023175, intron 1 of 9)	503	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding
diff_RLAGL_Vector_cond1_9099	chr7	82865927	82866707	+	5.79563	NA	Intergenic	CpG	-1016	NM_175366	108797	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 homolog B (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_9449	chr8	31176329	31176533	+	5.79480	NA	Intergenic	ERVB7_2B-LTR_MM|LTR|ERVK	-7707	NM_026453	67920	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1858	chr11	97434894	97435183	+	5.79430	NA	Intergenic	Intergenic	-15122	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding
diff_RLAGL_Vector_cond1_10460	chrX	73459050	73459317	+	5.79403	NA	promoter-TSS (NM_028633)	promoter-TSS (NM_028633)	-154	NM_207104	73738	Mm.264899	NM_028633	ENSMUSG00000031371	Haus7	1110020L19Rik|Uchl5ip|Uip1	HAUS augmin-like complex, subunit 7	protein-coding
diff_RLAGL_Vector_cond1_1064	chr10	57631992	57632271	+	5.79386	NA	5' UTR (NM_001039051, exon 1 of 5)	5' UTR (NM_001039051, exon 1 of 5)	150	NM_001039051	18768	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding
diff_RLAGL_Vector_cond1_4611	chr17	77200241	77200560	+	5.79317	NA	Intergenic	Intergenic	-999848	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
diff_RLAGL_Vector_cond1_8013	chr5	133299988	133300265	+	5.79198	NA	Intergenic	RMER15|LTR|ERVL	-757783	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
diff_RLAGL_Vector_cond1_1553	chr11	24397742	24398013	+	5.79164	NA	Intergenic	Intergenic	-84032	NR_045857	71316	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA
diff_RLAGL_Vector_cond1_7133	chr4	95475046	95475314	+	5.79156	NA	Intergenic	Intergenic	-82327	NM_001113412	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding
diff_RLAGL_Vector_cond1_1945	chr11	113555000	113555207	+	5.79131	NA	intron (NM_027216, intron 3 of 9)	intron (NM_027216, intron 3 of 9)	10712	NM_001166503	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding
diff_RLAGL_Vector_cond1_4471	chr17	49309120	49309439	+	5.79101	NA	intron (NR_033486, intron 2 of 4)	intron (NR_033486, intron 2 of 4)	3681	NR_033486	100415784	Mm.400421	NR_033486		Gm17830	-	predicted gene, 17830	ncRNA
diff_RLAGL_Vector_cond1_5688	chr2	109281089	109281361	+	5.79060	NA	intron (NM_139303, intron 1 of 16)	intron (NM_139303, intron 1 of 16)	487	NM_139303	228421	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik	kinesin family member 18A	protein-coding
diff_RLAGL_Vector_cond1_5324	chr2	20519579	20519994	+	5.79057	NA	5' UTR (NM_029895, exon 2 of 19)	5' UTR (NM_029895, exon 2 of 19)	273	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
diff_RLAGL_Vector_cond1_9383	chr8	13516149	13516372	+	5.78907	NA	Intergenic	Intergenic	-21725	NM_019521	14456	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding
diff_RLAGL_Vector_cond1_9465	chr8	35717555	35717878	+	5.78786	NA	Intergenic	MLT2B3|LTR|ERVL	108843	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding
diff_RLAGL_Vector_cond1_2608	chr13	28953375	28953809	+	5.78763	NA	promoter-TSS (NM_009238)	promoter-TSS (NM_009238)	90	NM_009238	20677	Mm.240627	NM_009238		Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding
diff_RLAGL_Vector_cond1_7996	chr5	131000585	131000961	+	5.78733	NA	intron (NM_145218, intron 5 of 10)	intron (NM_145218, intron 5 of 10)	306749	NM_145218	212996	Mm.299204	NM_145218		Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding
diff_RLAGL_Vector_cond1_6177	chr3	15329702	15329908	+	5.78698	NA	intron (NM_001076679, intron 1 of 2)	intron (NM_001076679, intron 1 of 2)	2497	NM_001076679	751864	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding
diff_RLAGL_Vector_cond1_5148	chr19	36371306	36371700	+	5.78580	NA	Intergenic	Intergenic	-7564	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding
diff_RLAGL_Vector_cond1_2946	chr13	115090217	115090716	+	5.78325	NA	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-308	NM_134058	105083	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8447	chr6	87582556	87582849	+	5.78317	NA	intron (NM_021381, intron 2 of 2)	intron (NM_021381, intron 2 of 2)	7999	NM_021381	58182	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pkr1	prokineticin receptor 1	protein-coding
diff_RLAGL_Vector_cond1_6820	chr4	10693935	10694434	+	5.78203	NA	intron (NR_045185, intron 4 of 4)	(CCTG)n|Simple_repeat|Simple_repeat	103618	NR_045185	73624	Mm.67392	NR_045185	ENSMUSG00000086080	1700123O12Rik	-	RIKEN cDNA 1700123O12 gene	ncRNA
diff_RLAGL_Vector_cond1_2213	chr12	45070174	45070573	+	5.78002	NA	intron (NM_144552, intron 1 of 5)	intron (NM_144552, intron 1 of 5)	4110	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
diff_RLAGL_Vector_cond1_5619	chr2	90619656	90619935	+	5.77997	NA	Intergenic	Intergenic	-39148	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding
diff_RLAGL_Vector_cond1_7648	chr5	37640814	37641105	+	5.77953	NA	intron (NM_022416, intron 2 of 11)	intron (NM_022416, intron 2 of 11)	76194	NM_022416	64293	Mm.103714	NM_022416	ENSMUSG00000029123	Stk32b	2510009F08Rik|STKG6|Stk32|YANK2	serine/threonine kinase 32B	protein-coding
diff_RLAGL_Vector_cond1_8038	chr5	135962375	135962636	+	5.77790	NA	intron (NM_001160366, intron 9 of 10)	intron (NM_001160366, intron 9 of 10)	11971	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding
diff_RLAGL_Vector_cond1_9645	chr8	78742466	78742846	+	5.77726	NA	Intergenic	Intergenic	78496	NM_030145	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_3825	chr15	101332393	101332666	+	5.77693	NA	Intergenic	Intergenic	-36823	NR_035462	100316694		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA
diff_RLAGL_Vector_cond1_1297	chr10	105531647	105531888	+	5.77658	NA	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	42712	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
diff_RLAGL_Vector_cond1_2595	chr13	23763506	23763746	+	5.77650	NA	promoter-TSS (NM_030609)	promoter-TSS (NM_030609)	-42	NM_030609	80838	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding
diff_RLAGL_Vector_cond1_1789	chr11	83291467	83291755	+	5.77627	NA	promoter-TSS (NR_028363)	promoter-TSS (NR_028363)	-88	NR_028363	613254	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA
diff_RLAGL_Vector_cond1_6469	chr3	95887663	95887882	+	5.77617	NA	intron (NR_040446, intron 3 of 3)	MTD|LTR|ERVL-MaLR	4158	NM_153513	229600	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding
diff_RLAGL_Vector_cond1_6455	chr3	92080461	92080828	+	5.77600	NA	exon (NM_008508, exon 2 of 2)	exon (NM_008508, exon 2 of 2)	2498	NM_008508	16939	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding
diff_RLAGL_Vector_cond1_5214	chr19	54116837	54117087	+	5.77597	NA	Intergenic	Intergenic	71780	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding
diff_RLAGL_Vector_cond1_6531	chr3	109294522	109294727	+	5.77548	NA	Intergenic	Intergenic	-46059	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding
diff_RLAGL_Vector_cond1_6994	chr4	55609265	55609512	+	5.77547	NA	Intergenic	Intergenic	-76913	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding
diff_RLAGL_Vector_cond1_3575	chr15	48251131	48251490	+	5.77519	NA	intron (NM_001081391, intron 10 of 70)	ID_B1|SINE|B4	540679	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
diff_RLAGL_Vector_cond1_540	chr1	143739353	143739723	+	5.77474	NA	promoter-TSS (NM_001038594)	promoter-TSS (NM_001038594)	-30	NM_001038592	69367	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding
diff_RLAGL_Vector_cond1_2050	chr12	7816742	7817050	+	5.77405	NA	Intergenic	Intergenic	-160781	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding
diff_RLAGL_Vector_cond1_9200	chr7	114323192	114323471	+	5.77355	NA	intron (NR_029437, intron 1 of 3)	intron (NR_029437, intron 1 of 3)	-47215	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding
diff_RLAGL_Vector_cond1_5449	chr2	49313116	49313327	+	5.77241	NA	intron (NM_001290656, intron 8 of 9)	intron (NM_001290656, intron 8 of 9)	67321	NM_001290656	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding
diff_RLAGL_Vector_cond1_5394	chr2	32535092	32535629	+	5.77221	NA	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	1	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding
diff_RLAGL_Vector_cond1_9090	chr7	80208245	80208445	+	5.77219	NA	intron (NM_013659, intron 2 of 14)	intron (NM_013659, intron 2 of 14)	21504	NM_013659	20352	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding
diff_RLAGL_Vector_cond1_1068	chr10	58673668	58673937	+	5.77184	NA	intron (NM_010100, intron 1 of 11)	intron (NM_010100, intron 1 of 11)	1894	NM_010100	13608	Mm.174523	NM_010100	ENSMUSG00000003227	Edar	ED1R|ED3|ED5|EDA-A1R|EDA3|dl	ectodysplasin-A receptor	protein-coding
diff_RLAGL_Vector_cond1_8949	chr7	44304927	44305687	+	5.77104	NA	intron (NM_009131, intron 3 of 3)	intron (NM_009131, intron 3 of 3)	1652	NM_009131	20256	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding
diff_RLAGL_Vector_cond1_514	chr1	136135074	136135314	+	5.77081	NA	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	3793	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding
diff_RLAGL_Vector_cond1_3866	chr16	11254194	11254581	+	5.77054	NA	promoter-TSS (NR_035466)	promoter-TSS (NR_035466)	58	NR_035466	100316833		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA
diff_RLAGL_Vector_cond1_4814	chr18	35823786	35824015	+	5.77035	NA	Intergenic	Intergenic	-5918	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding
diff_RLAGL_Vector_cond1_497	chr1	134067302	134067545	+	5.76998	NA	Intergenic	Intergenic	11732	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding
diff_RLAGL_Vector_cond1_2737	chr13	62785808	62786209	+	5.76876	NA	promoter-TSS (NM_001256065)	promoter-TSS (NM_001256065)	-200	NM_001256065	380850	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding
diff_RLAGL_Vector_cond1_7165	chr4	101443515	101443787	+	5.76799	NA	intron (NM_001177602, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	23948	NM_009647	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding
diff_RLAGL_Vector_cond1_3758	chr15	90224071	90224692	+	5.76786	NA	promoter-TSS (NR_106106)	promoter-TSS (NR_106106)	21	NR_106106	102466838		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA
diff_RLAGL_Vector_cond1_2055	chr12	8379821	8380071	+	5.76708	NA	Intergenic	Intergenic	66513	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_1025	chr10	44755476	44755675	+	5.76682	NA	Intergenic	Intergenic	-296827	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding
diff_RLAGL_Vector_cond1_9038	chr7	68691475	68691747	+	5.76681	NA	Intergenic	Intergenic	57627	NM_025549	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_4634	chr17	82827769	82828111	+	5.76503	NA	Intergenic	Lx8|LINE|L1	250285	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
diff_RLAGL_Vector_cond1_4216	chr16	95806379	95806810	+	5.76477	NA	Intergenic	Intergenic	92119	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA
diff_RLAGL_Vector_cond1_10314	chr9	114808709	114809035	+	5.76459	NA	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-26879	NM_001252479	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_2992	chr14	8213801	8214206	+	5.76362	NA	promoter-TSS (NM_001305936)	promoter-TSS (NM_001305936)	-78	NM_027782	71393	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_7724	chr5	51553885	51554089	+	5.76361	NA	promoter-TSS (NM_008904)	promoter-TSS (NM_008904)	-66	NM_008904	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding
diff_RLAGL_Vector_cond1_4865	chr18	46525677	46525988	+	5.76324	NA	5' UTR (NM_173423, exon 1 of 3)	5' UTR (NM_173423, exon 1 of 3)	139	NM_173423	240263	Mm.38249	NM_173423		Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding
diff_RLAGL_Vector_cond1_1545	chr11	22859665	22860206	+	5.76309	NA	promoter-TSS (NM_016888)	promoter-TSS (NM_016888)	-200	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_186	chr1	54194771	54194990	+	5.76246	NA	intron (NM_001001883, intron 1 of 28)	CpG	154	NM_172655	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding
diff_RLAGL_Vector_cond1_2794	chr13	69739594	69740146	+	5.76235	NA	promoter-TSS (NM_001145162)	promoter-TSS (NM_001145162)	27	NM_001145162	76980	Mm.23960	NM_001145162	ENSMUSG00000052981	Ube2ql1	3110006E14Rik	ubiquitin-conjugating enzyme E2Q family-like 1	protein-coding
diff_RLAGL_Vector_cond1_5903	chr2	147967910	147968144	+	5.76140	NA	Intergenic	Intergenic	77437	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding
diff_RLAGL_Vector_cond1_5014	chr18	82914136	82914461	+	5.76032	NA	promoter-TSS (NM_001177464)	promoter-TSS (NM_001177464)	-334	NM_001177464	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding
diff_RLAGL_Vector_cond1_4622	chr17	78936967	78937276	+	5.76016	NA	promoter-TSS (NM_001024806)	promoter-TSS (NM_001024806)	-14	NM_028611	73694	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding
diff_RLAGL_Vector_cond1_5016	chr18	83059683	83059960	+	5.75962	NA	Intergenic	Intergenic	-139261	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA
diff_RLAGL_Vector_cond1_9578	chr8	62967862	62968165	+	5.75902	NA	intron (NM_023689, intron 3 of 11)	intron (NM_023689, intron 3 of 11)	16668	NM_023689	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding
diff_RLAGL_Vector_cond1_7572	chr5	21645786	21646232	+	5.75825	NA	promoter-TSS (NM_001199632)	promoter-TSS (NM_001199632)	25	NM_026034	67211	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding
diff_RLAGL_Vector_cond1_7107	chr4	87369733	87370055	+	5.75760	NA	Intergenic	Intergenic	-139354	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
diff_RLAGL_Vector_cond1_10585	chrX	153723261	153723654	+	5.75635	NA	promoter-TSS (NM_027327)	promoter-TSS (NM_027327)	-97	NM_027327	70123	Mm.146408	NM_027327		2210013O21Rik	AI181827|Thp5	RIKEN cDNA 2210013O21 gene	protein-coding
diff_RLAGL_Vector_cond1_6712	chr3	148899276	148899696	+	5.75608	NA	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	55149	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_3931	chr16	32563053	32563590	+	5.75490	NA	Intergenic	Intergenic	-45575	NM_011638	22042	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding
diff_RLAGL_Vector_cond1_236	chr1	68466585	68466797	+	5.75432	NA	intron (NM_010154, intron 3 of 26)	MTEa|LTR|ERVL-MaLR	641368	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
diff_RLAGL_Vector_cond1_158	chr1	43534806	43535047	+	5.75428	NA	intron (NM_010879, intron 3 of 4)	intron (NM_010879, intron 3 of 4)	89175	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding
diff_RLAGL_Vector_cond1_10315	chr9	114933949	114934194	+	5.75204	NA	promoter-TSS (NM_175380)	promoter-TSS (NM_175380)	-84	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding
diff_RLAGL_Vector_cond1_2456	chr12	112117603	112118040	+	5.75126	NA	intron (NM_001081169, intron 6 of 14)	intron (NM_001081169, intron 6 of 14)	-8512	NR_049197	100885836		NR_049197	ENSMUSG00000106228	Mir3073b	mir-3073b|mmu-mir-3073b	microRNA 3073b	ncRNA
diff_RLAGL_Vector_cond1_7497	chr4	155841417	155841622	+	5.75096	NA	exon (NM_024263, exon 4 of 10)	exon (NM_024263, exon 4 of 10)	1839	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding
diff_RLAGL_Vector_cond1_1889	chr11	102033148	102033509	+	5.75072	NA	Intergenic	RMER6A|LTR|ERVK	-6373	NM_007863	13384	Mm.20449	NM_007863	ENSMUSG00000052373	Mpp3	6430514B01|Dlgh3	membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)	protein-coding
diff_RLAGL_Vector_cond1_1612	chr11	39917805	39918027	+	5.75008	NA	Intergenic	Intergenic	-527691	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
diff_RLAGL_Vector_cond1_4205	chr16	93638707	93638929	+	5.74979	NA	Intergenic	Intergenic	30981	NM_007620	12408	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding
diff_RLAGL_Vector_cond1_4361	chr17	29887960	29888175	+	5.74832	NA	promoter-TSS (NM_001081160)	promoter-TSS (NM_001081160)	-185	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
diff_RLAGL_Vector_cond1_9028	chr7	66839415	66839691	+	5.74821	NA	promoter-TSS (NM_001033877)	promoter-TSS (NM_001033877)	-182	NM_001033877	233332	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding
diff_RLAGL_Vector_cond1_2833	chr13	80957497	80957781	+	5.74695	NA	Intergenic	Intergenic	-6435	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA
diff_RLAGL_Vector_cond1_3266	chr14	87417020	87417338	+	5.74692	NA	intron (NM_001253755, intron 1 of 11)	CpG	596	NM_172605	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_7152	chr4	99715297	99715793	+	5.74604	NA	promoter-TSS (NM_001081264)	promoter-TSS (NM_001081264)	-85	NM_001081264	320438	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding
diff_RLAGL_Vector_cond1_4091	chr16	68401966	68402602	+	5.74591	NA	Intergenic	MER58B|DNA|hAT-Charlie	-781376	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_1508	chr11	12495799	12496146	+	5.74550	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-31012	NM_172496	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
diff_RLAGL_Vector_cond1_878	chr10	10557691	10557997	+	5.74527	NA	intron (NM_026405, intron 1 of 2)	CpG	363	NM_026405	67844	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_862	chr10	7589665	7590179	+	5.74469	NA	5' UTR (NM_172784, exon 1 of 7)	5' UTR (NM_172784, exon 1 of 7)	122	NM_172784	237253	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding
diff_RLAGL_Vector_cond1_3174	chr14	62843196	62843517	+	5.74438	NA	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	5635	NR_106174	102465889		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA
diff_RLAGL_Vector_cond1_4623	chr17	79020559	79020851	+	5.74400	NA	5' UTR (NM_001171004, exon 1 of 19)	5' UTR (NM_001171004, exon 1 of 19)	111	NM_029239	75292	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding
diff_RLAGL_Vector_cond1_4133	chr16	78974002	78974419	+	5.74379	NA	intron (NM_008941, intron 21 of 27)	intron (NM_008941, intron 21 of 27)	43262	NM_139134	246048	Mm.77895	NM_139134	ENSMUSG00000022860	Chodl	3110074E07Rik|MT75|PRED12	chondrolectin	protein-coding
diff_RLAGL_Vector_cond1_4641	chr17	83514256	83514697	+	5.74350	NA	promoter-TSS (NM_001159529)	promoter-TSS (NM_001159529)	-143	NM_001159529	20463	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding
diff_RLAGL_Vector_cond1_2161	chr12	32930210	32930461	+	5.74333	NA	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	23454	NR_044986	74076	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA
diff_RLAGL_Vector_cond1_8215	chr6	22688639	22689018	+	5.74288	NA	Intergenic	Intergenic	-186674	NM_001311064	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_3583	chr15	51877273	51877549	+	5.74259	NA	promoter-TSS (NM_030132)	promoter-TSS (NM_030132)	-30	NM_030132	78581	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23, small subunit (SSU) processome component, homolog (yeast)	protein-coding
diff_RLAGL_Vector_cond1_6249	chr3	36481763	36482220	+	5.74199	NA	3' UTR (NM_028183, exon 3 of 3)	3' UTR (NM_028183, exon 3 of 3)	6054	NM_028183	72282	Mm.55317	NM_028183	ENSMUSG00000027713	1810062G17Rik	-	RIKEN cDNA 1810062G17 gene	protein-coding
diff_RLAGL_Vector_cond1_5547	chr2	71690382	71690587	+	5.74192	NA	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-28933	NR_037979	381371	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA
diff_RLAGL_Vector_cond1_2436	chr12	108689154	108689391	+	5.74191	NA	TTS (NM_027299)	TTS (NM_027299)	13034	NM_001171002	70059	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	degenerative spermatocyte homolog 2 (Drosophila), lipid desaturase	protein-coding
diff_RLAGL_Vector_cond1_5551	chr2	72416532	72417064	+	5.74124	NA	intron (NM_023057, intron 15 of 19)	intron (NM_023057, intron 15 of 19)	-59421	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding
diff_RLAGL_Vector_cond1_9425	chr8	24397048	24397338	+	5.74113	NA	Intergenic	Intergenic	41753	NM_026931	69068	Mm.25775	NM_026931		1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding
diff_RLAGL_Vector_cond1_2562	chr13	13968913	13969177	+	5.74097	NA	intron (NM_178640, intron 2 of 11)	intron (NM_178640, intron 2 of 11)	14371	NM_178640	97884	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding
diff_RLAGL_Vector_cond1_4494	chr17	55712293	55712773	+	5.73942	NA	promoter-TSS (NM_028370)	promoter-TSS (NM_028370)	95	NM_028370	72836	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding
diff_RLAGL_Vector_cond1_1884	chr11	101316342	101316653	+	5.73921	NA	intron (NM_011192, intron 1 of 10)	intron (NM_011192, intron 1 of 10)	246	NM_011192	19192	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding
diff_RLAGL_Vector_cond1_3043	chr14	23114874	23115168	+	5.73784	NA	Intergenic	Intergenic	-20450	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA
diff_RLAGL_Vector_cond1_3094	chr14	37109869	37110339	+	5.73780	NA	promoter-TSS (NM_001206684)	promoter-TSS (NM_001206684)	-3	NM_001206684	70045	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830	RIKEN cDNA 2610528A11 gene	protein-coding
diff_RLAGL_Vector_cond1_5590	chr2	83759356	83759905	+	5.73776	NA	intron (NM_008402, intron 4 of 29)	intron (NM_008402, intron 4 of 29)	35233	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding
diff_RLAGL_Vector_cond1_2949	chr13	115564373	115564710	+	5.73772	NA	Intergenic	Intergenic	-462577	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding
diff_RLAGL_Vector_cond1_8349	chr6	57702871	57703464	+	5.73752	NA	exon (NM_133737, exon 1 of 9)	exon (NM_133737, exon 1 of 9)	712	NM_133737	71835	Mm.274904	NM_133737		Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding
diff_RLAGL_Vector_cond1_9522	chr8	47714023	47714309	+	5.73737	NA	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-235	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding
diff_RLAGL_Vector_cond1_5576	chr2	79544019	79544273	+	5.73726	NA	Intergenic	Intergenic	-87510	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding
diff_RLAGL_Vector_cond1_3803	chr15	98880911	98881362	+	5.73658	NA	intron (NM_026967, intron 1 of 7)	CpG	278	NM_026967	69159	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding
diff_RLAGL_Vector_cond1_2114	chr12	20990402	20990820	+	5.73560	NA	Intergenic	CpG	-121145	NM_001004364	211914	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
diff_RLAGL_Vector_cond1_6547	chr3	116033692	116033895	+	5.73529	NA	Intergenic	Intergenic	25496	NM_001163514	58193	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding
diff_RLAGL_Vector_cond1_9798	chr8	116951455	116951709	+	5.73442	NA	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	8189	NM_177700	234776	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding
diff_RLAGL_Vector_cond1_6922	chr4	34889308	34889699	+	5.73390	NA	Intergenic	RLTR17C_Mm|LTR|ERVK	-4276	NM_009889	12640	Mm.1361	NM_009889	ENSMUSG00000028298	Cga	CG-alpha|FSHA|GPHA1|GPHalpha|HCG|LHA|Tsha|aGSU|alpha-GSU|alphaGSU|alphaSU	glycoprotein hormones, alpha subunit	protein-coding
diff_RLAGL_Vector_cond1_2321	chr12	78984094	78984308	+	5.73366	NA	promoter-TSS (NM_001170401)	promoter-TSS (NM_001170401)	-723	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding
diff_RLAGL_Vector_cond1_3182	chr14	64949814	64950272	+	5.73223	NA	promoter-TSS (NM_001253731)	promoter-TSS (NM_001253731)	-2	NM_153414	210925	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding
diff_RLAGL_Vector_cond1_4526	chr17	62784073	62784444	+	5.73172	NA	intron (NM_207654, intron 1 of 4)	intron (NM_207654, intron 1 of 4)	97059	NM_207654	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
diff_RLAGL_Vector_cond1_2470	chr12	114088156	114088382	+	5.73142	NA	Intergenic	Intergenic	381197	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA
diff_RLAGL_Vector_cond1_8375	chr6	64896093	64896466	+	5.73131	NA	Intergenic	Intergenic	-146388	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding
diff_RLAGL_Vector_cond1_2920	chr13	109068573	109068810	+	5.73112	NA	intron (NM_011056, intron 3 of 16)	L1M4b|LINE|L1	-256053	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
diff_RLAGL_Vector_cond1_620	chr1	162388812	162389105	+	5.73085	NA	intron (NM_172646, intron 2 of 19)	intron (NM_172646, intron 2 of 19)	89072	NM_001038619	103967	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|mKIAA0820	dynamin 3	protein-coding
diff_RLAGL_Vector_cond1_5101	chr19	17316723	17316942	+	5.73053	NA	Intergenic	Lx8|LINE|L1	22673	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding
diff_RLAGL_Vector_cond1_327	chr1	86509477	86509742	+	5.73043	NA	Intergenic	Intergenic	-17127	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding
diff_RLAGL_Vector_cond1_8592	chr6	119175080	119175631	+	5.73030	NA	exon (NM_001033379, exon 1 of 9)	exon (NM_001033379, exon 1 of 9)	102	NM_001033379	319618	Mm.250197	NM_001033379	ENSMUSG00000041477	Dcp1b	B930050E02Rik	DCP1 decapping enzyme homolog B (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10494	chrX	95956757	95957221	+	5.72991	NA	promoter-TSS (NM_152822)	promoter-TSS (NM_152822)	-15	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_7915	chr5	110544287	110544688	+	5.72979	NA	5' UTR (NM_198306, exon 1 of 11)	5' UTR (NM_198306, exon 1 of 11)	132	NM_198306	231605	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	protein-coding
diff_RLAGL_Vector_cond1_2346	chr12	85785235	85785858	+	5.72974	NA	intron (NM_145447, intron 2 of 9)	intron (NM_145447, intron 2 of 9)	38999	NM_021446	58520	Mm.143795	NM_021446	ENSMUSG00000021252	0610007P14Rik	1190004E09Rik|AU019315|C77855|ORF11	RIKEN cDNA 0610007P14 gene	protein-coding
diff_RLAGL_Vector_cond1_6797	chr4	5459308	5459673	+	5.72973	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-172838	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA
diff_RLAGL_Vector_cond1_9735	chr8	103173938	103174160	+	5.72824	NA	Intergenic	RMER17D2|LTR|ERVK	173485	NR_036588	69794	Mm.396139	NR_036588		1600027J07Rik	-	RIKEN cDNA 1600027J07 gene	ncRNA
diff_RLAGL_Vector_cond1_7585	chr5	24394292	24394712	+	5.72781	NA	exon (NM_029020, exon 1 of 16)	exon (NM_029020, exon 1 of 16)	346	NM_029020	74610	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding
diff_RLAGL_Vector_cond1_1766	chr11	78080100	78080384	+	5.72718	NA	exon (NM_022313, exon 1 of 10)	exon (NM_022313, exon 1 of 10)	141	NM_022313	57837	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_1983	chr11	117736370	117736589	+	5.72495	NA	intron (NM_198022, intron 8 of 21)	intron (NM_198022, intron 8 of 21)	44142	NM_181321	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding
diff_RLAGL_Vector_cond1_7435	chr4	148038944	148039201	+	5.72495	NA	promoter-TSS (NM_011929)	promoter-TSS (NM_011929)	-5	NM_010840	17769	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	5,10-methylenetetrahydrofolate reductase	protein-coding
diff_RLAGL_Vector_cond1_6512	chr3	105452154	105452721	+	5.72398	NA	5' UTR (NM_001039347, exon 1 of 7)	5' UTR (NM_001039347, exon 1 of 7)	107	NM_001039347	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding
diff_RLAGL_Vector_cond1_3031	chr14	19823702	19824088	+	5.72385	NA	promoter-TSS (NM_026528)	promoter-TSS (NM_026528)	-72	NM_026528	68045	Mm.21932	NM_026528	ENSMUSG00000021807	2700060E02Rik	-	RIKEN cDNA 2700060E02 gene	protein-coding
diff_RLAGL_Vector_cond1_9343	chr8	4612970	4613206	+	5.72361	NA	promoter-TSS (NM_145591)	promoter-TSS (NM_145591)	-82	NM_145591	233987	Mm.102799	NM_145591		Zfp958	-	zinc finger protein 958	protein-coding
diff_RLAGL_Vector_cond1_3330	chr14	105427442	105427869	+	5.72355	NA	promoter-TSS (NR_045859)	promoter-TSS (NR_045859)	96	NR_045859	71362	Mm.410781	NR_045859		5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA
diff_RLAGL_Vector_cond1_9447	chr8	31149762	31150012	+	5.72332	NA	promoter-TSS (NM_144927)	promoter-TSS (NM_144927)	-429	NR_103719	234138	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_4465	chr17	48433848	48434164	+	5.72298	NA	Intergenic	Intergenic	-1278	NM_009694	11811	Mm.281793	NM_009694	ENSMUSG00000040694	Apobec2	Arp1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	protein-coding
diff_RLAGL_Vector_cond1_4797	chr18	30501226	30501436	+	5.72267	NA	Intergenic	Intergenic	228435	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
diff_RLAGL_Vector_cond1_146	chr1	40632525	40632999	+	5.72260	NA	Intergenic	Intergenic	-48950	NM_001033289	226999	Mm.256414	NM_001033289		Slc9a2	2210416H12Rik|4932415O19Rik|AV333884|NHE2	solute carrier family 9 (sodium/hydrogen exchanger), member 2	protein-coding
diff_RLAGL_Vector_cond1_9183	chr7	109010706	109010954	+	5.72109	NA	promoter-TSS (NM_021885)	promoter-TSS (NM_021885)	-50	NM_021885	22141	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby candidate gene	protein-coding
diff_RLAGL_Vector_cond1_3135	chr14	54572782	54573036	+	5.72086	NA	intron (NM_010590, intron 2 of 7)	intron (NM_010590, intron 2 of 7)	4752	NM_010590	16475	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding
diff_RLAGL_Vector_cond1_5340	chr2	22622133	22622621	+	5.72086	NA	promoter-TSS (NM_008078)	promoter-TSS (NM_008078)	50	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding
diff_RLAGL_Vector_cond1_10077	chr9	50693697	50693941	+	5.71904	NA	intron (NM_001311069, intron 6 of 19)	intron (NM_001311069, intron 6 of 19)	-34039	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding
diff_RLAGL_Vector_cond1_8879	chr7	27591379	27591686	+	5.71873	NA	promoter-TSS (NM_001110208)	promoter-TSS (NM_001110208)	-28	NM_001110208	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding
diff_RLAGL_Vector_cond1_6259	chr3	37748005	37748506	+	5.71840	NA	Intergenic	Intergenic	-23895	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding
diff_RLAGL_Vector_cond1_10540	chrX	130483467	130483737	+	5.71800	NA	Intergenic	MIRb|SINE|MIR	733860	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding
diff_RLAGL_Vector_cond1_818	chr1	193301971	193302250	+	5.71702	NA	promoter-TSS (NM_001277928)	promoter-TSS (NM_001277928)	116	NM_008484	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding
diff_RLAGL_Vector_cond1_10416	chrX	35930859	35931181	+	5.71625	NA	intron (NM_001009947, intron 1 of 52)	intron (NM_001009947, intron 1 of 52)	42188	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding
diff_RLAGL_Vector_cond1_6892	chr4	26346503	26346720	+	5.71599	NA	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	41	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding
diff_RLAGL_Vector_cond1_643	chr1	166266123	166266343	+	5.71588	NA	intron (NM_001164528, intron 1 of 9)	intron (NM_001164528, intron 1 of 9)	12094	NM_001164528	100039795	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|ENSMUSG00000040612|Ll	immunoglobulin-like domain containing receptor 2	protein-coding
diff_RLAGL_Vector_cond1_6152	chr3	8976175	8976537	+	5.71554	NA	intron (NM_009412, intron 1 of 5)	B4|SINE|B4	-12302	NM_001025261	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding
diff_RLAGL_Vector_cond1_1301	chr10	105754088	105754470	+	5.71550	NA	Intergenic	L1_Mur3|LINE|L1	87101	NM_207522	216292	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding
diff_RLAGL_Vector_cond1_10245	chr9	98032917	98033123	+	5.71545	NA	5' UTR (NM_022319, exon 1 of 18)	5' UTR (NM_022319, exon 1 of 18)	147	NM_022319	64085	Mm.440903	NM_022319	ENSMUSG00000032452	Clstn2	2900042C18Rik|AI448973|CSTN2|Cs2|Cst-2|mKIAA4134	calsyntenin 2	protein-coding
diff_RLAGL_Vector_cond1_9723	chr8	95080748	95080964	+	5.71367	NA	promoter-TSS (NM_028805)	promoter-TSS (NM_028805)	-345	NM_028805	74187	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding
diff_RLAGL_Vector_cond1_10303	chr9	111450961	111451357	+	5.71328	NA	intron (NM_172928, intron 1 of 4)	RCHARR1|DNA|hAT-Charlie	12078	NM_172928	245038	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding
diff_RLAGL_Vector_cond1_9040	chr7	68815332	68815720	+	5.71245	NA	Intergenic	Intergenic	-66288	NM_001042592	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_8877	chr7	27474641	27474860	+	5.71185	NA	intron (NM_133210, intron 1 of 1)	intron (NM_133210, intron 1 of 1)	910	NM_133210	170742	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4479	chr17	51360332	51360579	+	5.71131	NA	intron (NR_037250, intron 3 of 4)	intron (NR_037250, intron 3 of 4)	82467	NR_037253	100526485		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA
diff_RLAGL_Vector_cond1_2767	chr13	67332152	67332726	+	5.71001	NA	intron (NM_177622, intron 1 of 4)	intron (NM_177622, intron 1 of 4)	121	NM_177622	218314	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding
diff_RLAGL_Vector_cond1_9579	chr8	63877500	63877751	+	5.70974	NA	Intergenic	Intergenic	74545	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding
diff_RLAGL_Vector_cond1_9497	chr8	42815234	42815448	+	5.70974	NA	Intergenic	Intergenic	326145	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding
diff_RLAGL_Vector_cond1_6611	chr3	130894521	130894759	+	5.70945	NA	Intergenic	Intergenic	-164242	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding
diff_RLAGL_Vector_cond1_8792	chr7	3644835	3645362	+	5.70896	NA	promoter-TSS (NM_146176)	promoter-TSS (NM_146176)	-171	NM_146176	232791	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding
diff_RLAGL_Vector_cond1_1877	chr11	100287138	100287361	+	5.70788	NA	Intergenic	Intergenic	-17378	NM_212483	68239	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding
diff_RLAGL_Vector_cond1_3847	chr16	4896588	4896969	+	5.70737	NA	intron (NM_029657, intron 1 of 16)	intron (NM_029657, intron 1 of 16)	10678	NM_001252437	17237	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding
diff_RLAGL_Vector_cond1_4718	chr18	5205536	5205957	+	5.70723	NA	Intergenic	URR1A|DNA|hAT-Charlie	128693	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding
diff_RLAGL_Vector_cond1_5778	chr2	128359193	128359534	+	5.70680	NA	intron (NR_028589, intron 1 of 2)	intron (NR_028589, intron 1 of 2)	69988	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA
diff_RLAGL_Vector_cond1_10189	chr9	83834822	83835113	+	5.70638	NA	intron (NM_001110265, intron 1 of 20)	intron (NM_001110265, intron 1 of 20)	278	NM_009445	22137	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding
diff_RLAGL_Vector_cond1_10192	chr9	84253317	84253527	+	5.70591	NA	Intergenic	Intergenic	304641	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_52	chr1	13372301	13372604	+	5.70581	NA	promoter-TSS (NM_001302702)	promoter-TSS (NM_001302702)	-23	NM_001302702	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
diff_RLAGL_Vector_cond1_861	chr10	7470105	7470347	+	5.70571	NA	intron (NM_029975, intron 1 of 5)	IAPEY4_LTR|LTR|ERVK	3251	NM_029975	77777	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9946	chr9	20385397	20385650	+	5.70540	NA	promoter-TSS (NM_001004190)	promoter-TSS (NM_001004190)	-365	NM_001004190	434377	Mm.379669	NM_001004190	ENSMUSG00000045519	Zfp560	2310030G09Rik|Znf560	zinc finger protein 560	protein-coding
diff_RLAGL_Vector_cond1_2661	chr13	45389496	45389747	+	5.70514	NA	promoter-TSS (NM_153789)	promoter-TSS (NM_153789)	-121	NM_153789	218203	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding
diff_RLAGL_Vector_cond1_6021	chr2	166142727	166143050	+	5.70509	NA	intron (NM_028072, intron 1 of 20)	intron (NM_028072, intron 1 of 20)	12397	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding
diff_RLAGL_Vector_cond1_9103	chr7	83627444	83627750	+	5.70376	NA	Intergenic	Intergenic	-4420	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_1120	chr10	71376060	71376461	+	5.70354	NA	intron (NM_027184, intron 4 of 5)	ID_B1|SINE|B4	28467	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding
diff_RLAGL_Vector_cond1_6237	chr3	32708273	32708999	+	5.70331	NA	promoter-TSS (NM_019673)	promoter-TSS (NM_019673)	90	NM_019673	56456	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding
diff_RLAGL_Vector_cond1_3696	chr15	75923344	75923546	+	5.70127	NA	Intergenic	MT2A|LTR|ERVL	-1885	NM_025412	66194	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik	pyrroline-5-carboxylate reductase-like	protein-coding
diff_RLAGL_Vector_cond1_8342	chr6	56783686	56784274	+	5.70089	NA	intron (NM_145958, intron 2 of 3)	intron (NM_145958, intron 2 of 3)	13833	NM_145958	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_3264	chr14	87141783	87142098	+	5.70087	NA	promoter-TSS (NM_019670)	promoter-TSS (NM_019670)	-826	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
diff_RLAGL_Vector_cond1_9562	chr8	57702970	57703253	+	5.70052	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	-50056	NM_144731	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
diff_RLAGL_Vector_cond1_10378	chr9	123288381	123288841	+	5.69997	NA	Intergenic	Intergenic	-27822	NM_001002267	72309	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding
diff_RLAGL_Vector_cond1_1407	chr10	125362584	125363119	+	5.69884	NA	Intergenic	Intergenic	-34316	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
diff_RLAGL_Vector_cond1_9413	chr8	23237518	23237799	+	5.69862	NA	promoter-TSS (NM_024240)	promoter-TSS (NM_024240)	10	NM_024240	109145	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding
diff_RLAGL_Vector_cond1_6683	chr3	145924203	145924648	+	5.69812	NA	5' UTR (NM_009740, exon 1 of 3)	5' UTR (NM_009740, exon 1 of 3)	163	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding
diff_RLAGL_Vector_cond1_4165	chr16	87853759	87854048	+	5.69775	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	154949	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1	protein-coding
diff_RLAGL_Vector_cond1_9165	chr7	104581494	104581776	+	5.69762	NA	TTS (NM_147074)	TTS (NM_147074)	2011	NM_147074	57250	Mm.377129	NM_147074	ENSMUSG00000073926	Olfr653	MOR33-1|Ors19	olfactory receptor 653	protein-coding
diff_RLAGL_Vector_cond1_3681	chr15	73090539	73090822	+	5.69678	NA	intron (NM_053068, intron 1 of 2)	CpG	268	NM_053068	93696	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding
diff_RLAGL_Vector_cond1_3987	chr16	44557958	44558422	+	5.69580	NA	promoter-TSS (NR_037242)	promoter-TSS (NR_037242)	-61	NR_037242	100526478		NR_037242	ENSMUSG00000093046	Mir3081	mir-3081|mmu-mir-3081	microRNA 3081	ncRNA
diff_RLAGL_Vector_cond1_5828	chr2	137116210	137116519	+	5.69526	NA	5' UTR (NM_013822, exon 1 of 26)	5' UTR (NM_013822, exon 1 of 26)	156	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding
diff_RLAGL_Vector_cond1_9461	chr8	35495948	35496279	+	5.69523	NA	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-580	NM_026067	67276	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding
diff_RLAGL_Vector_cond1_10172	chr9	79213503	79213720	+	5.69500	NA	Intergenic	Intergenic	305691	NR_045336	100038575	Mm.367838	NR_045336		Gm10635	ENSMUSG00000074174	predicted gene 10635	ncRNA
diff_RLAGL_Vector_cond1_215	chr1	64122193	64122414	+	5.69459	NA	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-914	NM_033563	93691	Mm.29466	NM_033563		Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding
diff_RLAGL_Vector_cond1_7525	chr5	7344468	7344799	+	5.69421	NA	promoter-TSS (NM_001163223)	promoter-TSS (NM_001163223)	-255	NM_001163223	207618	Mm.478808	NM_001163223	ENSMUSG00000092094	Zfp804b	Gm441	zinc finger protein 804B	protein-coding
diff_RLAGL_Vector_cond1_334	chr1	87891034	87891253	+	5.69402	NA	intron (NM_177646, intron 3 of 29)	intron (NM_177646, intron 3 of 29)	37856	NM_177646	227333	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding
diff_RLAGL_Vector_cond1_221	chr1	65178948	65179165	+	5.69371	NA	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	86	NM_010497	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding
diff_RLAGL_Vector_cond1_6280	chr3	50443572	50443866	+	5.69277	NA	promoter-TSS (NM_011990)	promoter-TSS (NM_011990)	-106	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
diff_RLAGL_Vector_cond1_2259	chr12	57890830	57891075	+	5.69209	NA	Intergenic	Intergenic	-228041	NR_131112	217601	Mm.488987	NR_131112		BC042761	-	cDNA sequence BC042761	ncRNA
diff_RLAGL_Vector_cond1_9939	chr9	16046761	16046969	+	5.69184	NA	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-172309	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding
diff_RLAGL_Vector_cond1_207	chr1	61651525	61651863	+	5.69162	NA	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	12870	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
diff_RLAGL_Vector_cond1_1114	chr10	71159577	71159956	+	5.69045	NA	promoter-TSS (NM_031397)	promoter-TSS (NM_031397)	-132	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	bicaudal C homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1625	chr11	43836441	43836690	+	5.69030	NA	promoter-TSS (NM_007416)	promoter-TSS (NM_007416)	-76	NM_007416	11548	Mm.39086	NM_007416	ENSMUSG00000050541	Adra1b	[a]1b	adrenergic receptor, alpha 1b	protein-coding
diff_RLAGL_Vector_cond1_4486	chr17	53587130	53587436	+	5.68833	NA	intron (NM_001190846, intron 1 of 17)	intron (NM_001190846, intron 1 of 17)	3157	NM_001190846	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding
diff_RLAGL_Vector_cond1_2457	chr12	112130206	112130408	+	5.68801	NA	promoter-TSS (NR_029590)	promoter-TSS (NR_029590)	-573	NR_029590	387199		NR_029590	ENSMUSG00000065574	Mir203	Mirn203|mir-203|mmu-mir-203	microRNA 203	ncRNA
diff_RLAGL_Vector_cond1_1181	chr10	81392361	81392919	+	5.68786	NA	promoter-TSS (NM_001099917)	promoter-TSS (NM_001099917)	-424	NM_001099917	72273	Mm.253147	NM_001099917		Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding
diff_RLAGL_Vector_cond1_117	chr1	33669694	33669918	+	5.68729	NA	promoter-TSS (NR_033199)	promoter-TSS (NR_033199)	-12	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding
diff_RLAGL_Vector_cond1_1966	chr11	116030035	116030396	+	5.68573	NA	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	-101	NM_172569	217331	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Zc3h5|Zc3hdc5|mKIAA1753	unkempt homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2046	chr12	5375425	5376039	+	5.68392	NA	promoter-TSS (NM_001164493)	promoter-TSS (NM_001164493)	-50	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding
diff_RLAGL_Vector_cond1_7313	chr4	130168337	130168549	+	5.68229	NA	intron (NM_001168333, intron 5 of 11)	intron (NM_001168333, intron 5 of 11)	6359	NM_001168333	94242	Mm.15801	NM_023476	ENSMUSG00000028776	Tinagl1	1110021J17Rik|AZ-1|AZ1|Arg1|Lcn7|TARP|Tinagl	tubulointerstitial nephritis antigen-like 1	protein-coding
diff_RLAGL_Vector_cond1_8760	chr6	145023048	145023251	+	5.68197	NA	intron (NM_007532, intron 5 of 10)	intron (NM_007532, intron 5 of 10)	25663	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding
diff_RLAGL_Vector_cond1_10570	chrX	145089363	145089700	+	5.68150	NA	intron (NM_001033795, intron 2 of 6)	RLTR9D|LTR|ERVK	50187	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA
diff_RLAGL_Vector_cond1_8964	chr7	45814213	45814412	+	5.68139	NA	promoter-TSS (NM_001112701)	promoter-TSS (NM_001112701)	4	NM_011181	19158	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding
diff_RLAGL_Vector_cond1_4260	chr17	12916096	12916434	+	5.68127	NA	promoter-TSS (NM_001290712)	promoter-TSS (NM_001290712)	-64	NM_013686	21454	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding
diff_RLAGL_Vector_cond1_2762	chr13	67081095	67081357	+	5.68117	NA	intron (NM_001012325, intron 1 of 3)	intron (NM_001012325, intron 1 of 3)	319	NM_001292066	432769	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding
diff_RLAGL_Vector_cond1_7060	chr4	75278296	75278520	+	5.68070	NA	promoter-TSS (NM_025849)	promoter-TSS (NM_025849)	-122	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
diff_RLAGL_Vector_cond1_6612	chr3	130943171	130943568	+	5.67999	NA	Intergenic	Intergenic	-166928	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding
diff_RLAGL_Vector_cond1_1661	chr11	54860464	54860690	+	5.67849	NA	promoter-TSS (NM_029327)	promoter-TSS (NM_029327)	14	NM_029327	75530	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding
diff_RLAGL_Vector_cond1_1521	chr11	16914804	16915083	+	5.67785	NA	Intergenic	Intergenic	36339	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA
diff_RLAGL_Vector_cond1_9319	chr7	142967980	142968413	+	5.67701	NA	exon (NM_008554, exon 2 of 3)	exon (NM_008554, exon 2 of 3)	1068	NM_008554	17173	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute complex homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8970	chr7	48137766	48138009	+	5.67662	NA	Intergenic	RLTR1B-int|LTR|ERV1	31098	NM_207538	404239	Mm.377927	NM_207538	ENSMUSG00000070551	Mrgprb5	Mgrg11|MrgB5	MAS-related GPR, member B5	protein-coding
diff_RLAGL_Vector_cond1_9110	chr7	84528855	84529101	+	5.67629	NA	promoter-TSS (NR_045098)	promoter-TSS (NR_045098)	24	NR_045098	100039239	Mm.44882	NR_045098	ENSMUSG00000097789	Gm2115	C77713	predicted gene 2115	ncRNA
diff_RLAGL_Vector_cond1_4688	chr17	90934816	90935226	+	5.67601	NA	intron (NM_020252, intron 4 of 22)	intron (NM_020252, intron 4 of 22)	73852	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
diff_RLAGL_Vector_cond1_8520	chr6	101092263	101092744	+	5.67551	NA	Intergenic	Intergenic	258865	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding
diff_RLAGL_Vector_cond1_3591	chr15	53680229	53680569	+	5.67520	NA	intron (NM_177225, intron 3 of 4)	intron (NM_177225, intron 3 of 4)	222037	NM_177225	320679	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding
diff_RLAGL_Vector_cond1_8012	chr5	133189879	133190425	+	5.67474	NA	Intergenic	Intergenic	-647809	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
diff_RLAGL_Vector_cond1_2684	chr13	54438731	54439219	+	5.67468	NA	Intergenic	RMER15-int|LTR|ERVL	29865	NM_028597	73666	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding
diff_RLAGL_Vector_cond1_9024	chr7	66136253	66136465	+	5.67448	NA	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26844	NM_001081163	269941	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding
diff_RLAGL_Vector_cond1_1666	chr11	55469148	55469618	+	5.67433	NA	promoter-TSS (NM_013716)	promoter-TSS (NM_013716)	-369	NM_013716	27041	Mm.39631	NM_013716		G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_6018	chr2	165563434	165563852	+	5.67283	NA	Intergenic	CpG	-31385	NM_001271963	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	eyes absent 2 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1943	chr11	113259900	113260381	+	5.67224	NA	intron (NM_027216, intron 7 of 9)	intron (NM_027216, intron 7 of 9)	-50471	NR_040276	319871	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA
diff_RLAGL_Vector_cond1_6432	chr3	85970936	85971143	+	5.67091	NA	Intergenic	CpG	31452	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding
diff_RLAGL_Vector_cond1_6312	chr3	55697288	55697487	+	5.67044	NA	intron (NM_030595, intron 45 of 57)	intron (NM_030595, intron 45 of 57)	-85123	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_1974	chr11	117114862	117115291	+	5.66999	NA	promoter-TSS (NM_001166506)	promoter-TSS (NM_001166506)	-96	NM_001166507	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding
diff_RLAGL_Vector_cond1_7090	chr4	83524934	83525184	+	5.66903	NA	promoter-TSS (NM_001081012)	promoter-TSS (NM_001081012)	-486	NM_001081012	320226	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding
diff_RLAGL_Vector_cond1_10610	chrX	164269258	164269685	+	5.66897	NA	promoter-TSS (NM_001301402)	promoter-TSS (NM_001301402)	40	NM_027153	69656	Mm.293463	NM_027153	ENSMUSG00000031379	Pir	2310042L19Rik|Pirnl	pirin	protein-coding
diff_RLAGL_Vector_cond1_10120	chr9	63399160	63399426	+	5.66643	NA	promoter-TSS (NM_027090)	promoter-TSS (NM_027090)	-49	NM_027090	69478	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding
diff_RLAGL_Vector_cond1_8647	chr6	128479605	128479945	+	5.66639	NA	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	41018	NR_028593	791299	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	ENSMUSG00000059659	predicted gene 10069	ncRNA
diff_RLAGL_Vector_cond1_8242	chr6	30469455	30469671	+	5.66563	NA	Intergenic	Intergenic	8578	NR_131049	69337	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA
diff_RLAGL_Vector_cond1_1772	chr11	78697847	78698078	+	5.66527	NA	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-537	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding
diff_RLAGL_Vector_cond1_4593	chr17	74527794	74528520	+	5.66525	NA	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	-138	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding
diff_RLAGL_Vector_cond1_528	chr1	138963874	138964301	+	5.66493	NA	intron (NM_001166501, intron 1 of 21)	CpG	378	NM_001166501	329260	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_2642	chr13	37667966	37668230	+	5.66421	NA	Intergenic	L1MA6|LINE|L1	-157940	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_435	chr1	118498391	118498639	+	5.66315	NA	intron (NM_001293300, intron 9 of 40)	intron (NM_001293300, intron 9 of 40)	-39250	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA
diff_RLAGL_Vector_cond1_123	chr1	34061172	34061452	+	5.66314	NA	intron (NM_133833, intron 1 of 92)	intron (NM_133833, intron 1 of 92)	49487	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding
diff_RLAGL_Vector_cond1_1771	chr11	78697129	78697618	+	5.66260	NA	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	52	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding
diff_RLAGL_Vector_cond1_8110	chr5	149352983	149353296	+	5.66177	NA	Intergenic	Intergenic	-58667	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding
diff_RLAGL_Vector_cond1_5065	chr19	6363659	6364084	+	5.66162	NA	non-coding (NR_122118, exon 1 of 12)	non-coding (NR_122118, exon 1 of 12)	181	NM_011750	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding
diff_RLAGL_Vector_cond1_509	chr1	135753032	135753253	+	5.66135	NA	TTS (NM_007791)	TTS (NM_007791)	-12943	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology-like domain, family A, member 3	protein-coding
diff_RLAGL_Vector_cond1_8736	chr6	142756523	142756978	+	5.66097	NA	promoter-TSS (NM_009908)	promoter-TSS (NM_009908)	64	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding
diff_RLAGL_Vector_cond1_3655	chr15	65778384	65778631	+	5.65935	NA	Intergenic	Kanga11a|DNA|TcMar-Tc2	-8534	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_6901	chr4	29183841	29184149	+	5.65889	NA	Intergenic	Intergenic	370850	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
diff_RLAGL_Vector_cond1_2932	chr13	111940903	111941110	+	5.65866	NA	Intergenic	Intergenic	73070	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA
diff_RLAGL_Vector_cond1_7652	chr5	37824474	37824818	+	5.65824	NA	promoter-TSS (NM_010835)	promoter-TSS (NM_010835)	-61	NM_010835	17701	Mm.256509	NM_010835	ENSMUSG00000048450	Msx1	AA675338|AI324650|Hox-7|Hox7|Hox7.1|msh	msh homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_8433	chr6	85137788	85138037	+	5.65801	NA	promoter-TSS (NM_011467)	promoter-TSS (NM_011467)	-148	NM_011467	20751	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|ENSMUSG00000071345|Gm10328	sepiapterin reductase	protein-coding
diff_RLAGL_Vector_cond1_6411	chr3	81036613	81036943	+	5.65678	NA	5' UTR (NM_019971, exon 1 of 6)	5' UTR (NM_019971, exon 1 of 6)	362	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding
diff_RLAGL_Vector_cond1_288	chr1	77461074	77461308	+	5.65661	NA	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	35577	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA
diff_RLAGL_Vector_cond1_7221	chr4	114346138	114346561	+	5.65628	NA	Intergenic	Intergenic	-60375	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding
diff_RLAGL_Vector_cond1_2545	chr13	12210456	12210749	+	5.65505	NA	intron (NM_001081128, intron 22 of 32)	MT2A|LTR|ERVL	-24114	NR_045170	328186	Mm.188154	NM_183202		Gm10336	B330003H21|ENSMUSG00000071543	predicted gene 10336	ncRNA
diff_RLAGL_Vector_cond1_5582	chr2	80314865	80315175	+	5.65465	NA	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	-446	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ (Hsp40) homolog, subfamily C, member 10	protein-coding
diff_RLAGL_Vector_cond1_6970	chr4	49560126	49560372	+	5.65464	NA	Intergenic	Intergenic	-10703	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding
diff_RLAGL_Vector_cond1_2582	chr13	21721986	21722208	+	5.65397	NA	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	53	NM_178200	319186	Mm.277425	NM_178200		Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding
diff_RLAGL_Vector_cond1_5993	chr2	160645574	160646144	+	5.65259	NA	promoter-TSS (NM_009408)	promoter-TSS (NM_009408)	-38	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding
diff_RLAGL_Vector_cond1_1898	chr11	103115975	103116406	+	5.65143	NA	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-135	NM_138753	192231	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding
diff_RLAGL_Vector_cond1_1764	chr11	77981630	77981862	+	5.65086	NA	Intergenic	Intergenic	-1070	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding
diff_RLAGL_Vector_cond1_1230	chr10	88497086	88497372	+	5.65073	NA	intron (NM_001146690, intron 1 of 8)	B4|SINE|B4	6741	NM_144807	212862	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_8810	chr7	7171144	7171625	+	5.65000	NA	promoter-TSS (NM_146179)	promoter-TSS (NM_146179)	31	NM_146179	232854	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding
diff_RLAGL_Vector_cond1_2473	chr12	116047928	116048238	+	5.64923	NA	intron (NM_001286214, intron 1 of 2)	intron (NM_001286214, intron 1 of 2)	359	NM_001286214	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding
diff_RLAGL_Vector_cond1_7495	chr4	155563743	155564066	+	5.64899	NA	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	89	NM_001159637	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding
diff_RLAGL_Vector_cond1_2434	chr12	108422904	108423270	+	5.64896	NA	5' UTR (NM_001043335, exon 1 of 22)	5' UTR (NM_001043335, exon 1 of 22)	271	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding
diff_RLAGL_Vector_cond1_9510	chr8	45885238	45885469	+	5.64868	NA	promoter-TSS (NM_016798)	promoter-TSS (NM_016798)	-132	NM_016798	53318	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding
diff_RLAGL_Vector_cond1_154	chr1	43152578	43152989	+	5.64814	NA	intron (NM_001289533, intron 2 of 5)	intron (NM_001289533, intron 2 of 5)	11178	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
diff_RLAGL_Vector_cond1_6633	chr3	135211954	135212188	+	5.64724	NA	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-492	NM_173762	229841	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding
diff_RLAGL_Vector_cond1_8771	chr6	146642401	146642669	+	5.64702	NA	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-44	NM_025315	108098	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding
diff_RLAGL_Vector_cond1_7855	chr5	100518077	100518444	+	5.64663	NA	promoter-TSS (NM_012001)	promoter-TSS (NM_012001)	-49	NM_012001	26891	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e	COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)	protein-coding
diff_RLAGL_Vector_cond1_7541	chr5	15734010	15734775	+	5.64602	NA	Intergenic	Intergenic	-20121	NM_001281511	100502967	Mm.425235	NM_001281511	ENSMUSG00000073208	Speer4c	4933431D05Rik|SPEER-4C	spermatogenesis associated glutamate (E)-rich protein 4C	protein-coding
diff_RLAGL_Vector_cond1_5594	chr2	84425206	84425465	+	5.64587	NA	promoter-TSS (NM_018782)	promoter-TSS (NM_018782)	-69	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding
diff_RLAGL_Vector_cond1_9053	chr7	72497284	72497540	+	5.64585	NA	Intergenic	Intergenic	-190817	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding
diff_RLAGL_Vector_cond1_8246	chr6	31126461	31126924	+	5.64576	NA	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-63599	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA
diff_RLAGL_Vector_cond1_3514	chr15	32304118	32304490	+	5.64421	NA	intron (NM_009154, intron 1 of 22)	intron (NM_009154, intron 1 of 22)	59491	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding
diff_RLAGL_Vector_cond1_5521	chr2	65116519	65116958	+	5.64417	NA	intron (NM_177025, intron 6 of 13)	intron (NM_177025, intron 6 of 13)	-93972	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding
diff_RLAGL_Vector_cond1_1151	chr10	79717059	79717318	+	5.64382	NA	exon (NM_008226, exon 1 of 8)	exon (NM_008226, exon 1 of 8)	554	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding
diff_RLAGL_Vector_cond1_1265	chr10	95719593	95719883	+	5.64377	NA	Intergenic	RLTR9E|LTR|ERVK	-155571	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding
diff_RLAGL_Vector_cond1_2802	chr13	72209888	72210404	+	5.64364	NA	Intergenic	Intergenic	-246423	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7171	chr4	103114246	103114659	+	5.64302	NA	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	62	NM_001286222	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	mesoderm induction early response 1 homolog (Xenopus laevis	protein-coding
diff_RLAGL_Vector_cond1_1590	chr11	32205065	32205519	+	5.64272	NA	promoter-TSS (NM_030093)	promoter-TSS (NM_030093)	-123	NM_030093	78372	Mm.29952	NM_030093	ENSMUSG00000040767	Snrnp25	3300001G02Rik|AL033324|C16ORF33	small nuclear ribonucleoprotein 25 (U11/U12)	protein-coding
diff_RLAGL_Vector_cond1_7072	chr4	77423778	77424107	+	5.64263	NA	intron (NM_011211, intron 4 of 39)	intron (NM_011211, intron 4 of 39)	787953	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
diff_RLAGL_Vector_cond1_9668	chr8	83189784	83190069	+	5.64188	NA	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	24574	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding
diff_RLAGL_Vector_cond1_1713	chr11	68033617	68033898	+	5.64098	NA	intron (NM_018768, intron 6 of 7)	MER68|LTR|ERVL	67274	NM_018768	55943	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding
diff_RLAGL_Vector_cond1_3781	chr15	94463361	94463570	+	5.64072	NA	Intergenic	Intergenic	-59115	NM_177431	223838	Mm.214132	NM_177431	ENSMUSG00000022449	Adamts20	Adamst20|bt	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	protein-coding
diff_RLAGL_Vector_cond1_1376	chr10	119453788	119454028	+	5.64058	NA	promoter-TSS (NM_133442)	promoter-TSS (NM_133442)	-126	NM_001277293	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_6647	chr3	138510609	138510819	+	5.63993	NA	Intergenic	Intergenic	-15477	NM_007917	13684	Mm.3941	NM_007917		Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding
diff_RLAGL_Vector_cond1_5415	chr2	38339135	38339528	+	5.63984	NA	promoter-TSS (NM_001290646)	promoter-TSS (NM_001290646)	50	NM_001290646	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding
diff_RLAGL_Vector_cond1_8079	chr5	142133966	142134502	+	5.63868	NA	intron (NM_177879, intron 32 of 44)	intron (NM_177879, intron 32 of 44)	-267263	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding
diff_RLAGL_Vector_cond1_10060	chr9	46431134	46431526	+	5.63833	NA	Intergenic	Intergenic	-111344	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding
diff_RLAGL_Vector_cond1_7814	chr5	86064982	86065649	+	5.63816	NA	intron (NM_007683, intron 1 of 18)	CpG	268	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
diff_RLAGL_Vector_cond1_8339	chr6	55950811	55951049	+	5.63786	NA	intron (NM_001081665, intron 9 of 13)	intron (NM_001081665, intron 9 of 13)	-66585	NM_011153	19051	Mm.42096	NM_011153	ENSMUSG00000002930	Ppp1r17	Gsbs|Ppp1r2	protein phosphatase 1, regulatory subunit 17	protein-coding
diff_RLAGL_Vector_cond1_6616	chr3	131603008	131603221	+	5.63777	NA	intron (NM_001289479, intron 9 of 13)	intron (NM_001289479, intron 9 of 13)	37082	NM_001289477	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
diff_RLAGL_Vector_cond1_2137	chr12	27085970	27086253	+	5.63691	NA	Intergenic	Intergenic	28884	NR_045052	100504347	Mm.130500	NR_045052		Gm20187	-	predicted gene, 20187	ncRNA
diff_RLAGL_Vector_cond1_1337	chr10	111559194	111559435	+	5.63689	NA	Intergenic	URR1A|DNA|hAT-Charlie	34959	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA
diff_RLAGL_Vector_cond1_10123	chr9	63761159	63761529	+	5.63533	NA	Intergenic	L1MB3|LINE|L1	-3350	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding
diff_RLAGL_Vector_cond1_6500	chr3	101939164	101939442	+	5.63395	NA	Intergenic	Intergenic	-14850	NM_001039371	242126	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding
diff_RLAGL_Vector_cond1_9274	chr7	133382178	133382658	+	5.63343	NA	Intergenic	Intergenic	219697	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding
diff_RLAGL_Vector_cond1_7212	chr4	111898647	111898975	+	5.63285	NA	intron (NM_145551, intron 1 of 14)	intron (NM_145551, intron 1 of 14)	3985	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding
diff_RLAGL_Vector_cond1_4459	chr17	47955510	47955710	+	5.63275	NA	Intergenic	Intergenic	-30978	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding
diff_RLAGL_Vector_cond1_7507	chr5	3343820	3344104	+	5.63268	NA	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	69	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding
diff_RLAGL_Vector_cond1_122	chr1	33907955	33908160	+	5.63232	NA	promoter-TSS (NM_177235)	promoter-TSS (NM_177235)	-168	NM_001276764	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding
diff_RLAGL_Vector_cond1_393	chr1	103551235	103551489	+	5.63228	NA	Intergenic	Intergenic	-1217457	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
diff_RLAGL_Vector_cond1_5132	chr19	29101120	29101358	+	5.63208	NA	promoter-TSS (NM_021525)	promoter-TSS (NM_021525)	-136	NM_021525	59028	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding
diff_RLAGL_Vector_cond1_9029	chr7	67168832	67169170	+	5.63183	NA	Intergenic	L2c|LINE|L2	53457	NR_131044	76628	Mm.384589	NR_131043		1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA
diff_RLAGL_Vector_cond1_1311	chr10	107312639	107312895	+	5.63144	NA	intron (NM_001284329, intron 1 of 5)	intron (NM_001284329, intron 1 of 5)	40373	NM_001284329	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_3463	chr15	10981362	10982060	+	5.63020	NA	promoter-TSS (NM_008537)	promoter-TSS (NM_008537)	-45	NM_008537	17117	Mm.2787	NM_008537	ENSMUSG00000022244	Amacr	Macr1	alpha-methylacyl-CoA racemase	protein-coding
diff_RLAGL_Vector_cond1_6721	chr3	149370638	149370985	+	5.62942	NA	Intergenic	Intergenic	96074	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
diff_RLAGL_Vector_cond1_2751	chr13	64105915	64106129	+	5.62914	NA	intron (NM_001001321, intron 8 of 11)	intron (NM_001001321, intron 8 of 11)	-16821	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding
diff_RLAGL_Vector_cond1_8133	chr6	3468686	3468935	+	5.62865	NA	intron (NM_178899, intron 4 of 9)	intron (NM_178899, intron 4 of 9)	25688	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding
diff_RLAGL_Vector_cond1_1037	chr10	52174440	52174652	+	5.62852	NA	intron (NM_011282, intron 4 of 43)	intron (NM_011282, intron 4 of 43)	20698	NM_011282	19886	Mm.236163	NM_011282	ENSMUSG00000019893	Ros1	Ros-1|c-ros	Ros1 proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_8240	chr6	30173873	30174085	+	5.62843	NA	non-coding (NR_126541, exon 1 of 2)	non-coding (NR_126541, exon 1 of 2)	146	NR_126540	101447999		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA
diff_RLAGL_Vector_cond1_6120	chr2	179976822	179977093	+	5.62794	NA	promoter-TSS (NM_001081092)	promoter-TSS (NM_001081092)	104	NR_033782	66730	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA
diff_RLAGL_Vector_cond1_3703	chr15	76243302	76243555	+	5.62594	NA	promoter-TSS (NM_001163576)	promoter-TSS (NM_001163576)	12	NM_001163576	671535	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding
diff_RLAGL_Vector_cond1_7811	chr5	82462428	82462664	+	5.62580	NA	Intergenic	Intergenic	336519	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
diff_RLAGL_Vector_cond1_8153	chr6	6863482	6863891	+	5.62576	NA	TTS (NR_002839)	TTS (NR_002839)	352	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding
diff_RLAGL_Vector_cond1_10594	chrX	159615871	159616180	+	5.62564	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-11247	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_6948	chr4	45012347	45012586	+	5.62551	NA	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-54	NM_001163284	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_1313	chr10	107363083	107363621	+	5.62530	NA	intron (NM_001039354, intron 2 of 5)	intron (NM_001039354, intron 2 of 5)	90958	NM_001284329	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_2474	chr12	116077579	116078173	+	5.62510	NA	exon (NM_009511, exon 1 of 13)	exon (NM_009511, exon 1 of 13)	150	NM_009511	22355	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding
diff_RLAGL_Vector_cond1_7723	chr5	51406462	51406835	+	5.62446	NA	Intergenic	Intergenic	147273	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding
diff_RLAGL_Vector_cond1_4723	chr18	6764830	6765203	+	5.62431	NA	promoter-TSS (NM_181070)	promoter-TSS (NM_181070)	-151	NM_181070	19330	Mm.132802	NM_181070		Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_4979	chr18	77565031	77565446	+	5.62415	NA	promoter-TSS (NM_001164504)	promoter-TSS (NM_001164504)	-102	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding
diff_RLAGL_Vector_cond1_2973	chr13	118715042	118715352	+	5.62407	NA	5' UTR (NM_008002, exon 1 of 3)	5' UTR (NM_008002, exon 1 of 3)	498	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding
diff_RLAGL_Vector_cond1_9001	chr7	59243311	59243536	+	5.62344	NA	5' UTR (NM_011668, exon 3 of 13)	5' UTR (NM_011668, exon 3 of 13)	14671	NM_001033962	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding
diff_RLAGL_Vector_cond1_6400	chr3	75861776	75861979	+	5.62322	NA	Intergenic	B3|SINE|B2	95072	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding
diff_RLAGL_Vector_cond1_8456	chr6	88758660	88759021	+	5.62296	NA	intron (NM_001166251, intron 2 of 7)	intron (NM_001166251, intron 2 of 7)	34136	NM_001166250	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding
diff_RLAGL_Vector_cond1_3405	chr15	3247967	3248201	+	5.62253	NA	Intergenic	Intergenic	-22683	NM_001042613	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Sepp1	AU018766|D15Ucla1|Se-P|selp	selenoprotein P, plasma, 1	protein-coding
diff_RLAGL_Vector_cond1_8262	chr6	35539712	35540037	+	5.62218	NA	promoter-TSS (NM_008098)	promoter-TSS (NM_008098)	14	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding
diff_RLAGL_Vector_cond1_7014	chr4	62503160	62503368	+	5.62215	NA	Intergenic	Intergenic	-1064	NM_024257	72748	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_7074	chr4	77524124	77524392	+	5.62208	NA	intron (NM_011211, intron 4 of 39)	RLTR51B_Mm|LTR|ERVK?	687637	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
diff_RLAGL_Vector_cond1_355	chr1	91436403	91436832	+	5.62155	NA	intron (NM_011066, intron 9 of 22)	G-rich|Low_complexity|Low_complexity	22711	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding
diff_RLAGL_Vector_cond1_4755	chr18	15402554	15402845	+	5.62155	NA	5' UTR (NM_001308647, exon 1 of 5)	5' UTR (NM_001308647, exon 1 of 5)	317	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding
diff_RLAGL_Vector_cond1_8695	chr6	136828001	136828444	+	5.62088	NA	promoter-TSS (NM_178776)	promoter-TSS (NM_178776)	-6	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding
diff_RLAGL_Vector_cond1_6329	chr3	58583091	58583402	+	5.62083	NA	intron (NM_001040396, intron 1 of 5)	intron (NM_001040396, intron 1 of 5)	6588	NM_001040396	69227	Mm.270950	NM_001040396	ENSMUSG00000075700	Selt	2810407C02Rik|5730408P04Rik	selenoprotein T	protein-coding
diff_RLAGL_Vector_cond1_3322	chr14	103938254	103938529	+	5.62045	NA	Intergenic	Intergenic	88751	NR_045953	73877	Mm.399172	NR_045953		4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA
diff_RLAGL_Vector_cond1_5727	chr2	117210806	117211048	+	5.61940	NA	Intergenic	Lx8|LINE|L1	25800	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA
diff_RLAGL_Vector_cond1_9004	chr7	60125375	60125584	+	5.61774	NA	intron (NM_001082962, intron 2 of 10)	intron (NM_001082962, intron 2 of 10)	14740	NM_001082962	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding
diff_RLAGL_Vector_cond1_189	chr1	55173872	55174533	+	5.61772	NA	intron (NM_028713, intron 8 of 8)	intron (NM_028713, intron 8 of 8)	42957	NM_001310585	19070	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding
diff_RLAGL_Vector_cond1_1750	chr11	75461142	75461428	+	5.61766	NA	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-254	NR_030711	100042498	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA
diff_RLAGL_Vector_cond1_6089	chr2	174075849	174076638	+	5.61677	NA	promoter-TSS (NM_001102423)	promoter-TSS (NM_001102423)	-808	NM_001102424	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding
diff_RLAGL_Vector_cond1_4374	chr17	32702775	32703156	+	5.61661	NA	3' UTR (NM_134127, exon 13 of 13)	3' UTR (NM_134127, exon 13 of 13)	17306	NM_134127	106648	Mm.26539	NM_134127	ENSMUSG00000073424	Cyp4f15	AI787289|Cyp4f-15	cytochrome P450, family 4, subfamily f, polypeptide 15	protein-coding
diff_RLAGL_Vector_cond1_9714	chr8	93810001	93810799	+	5.61660	NA	promoter-TSS (NM_010308)	promoter-TSS (NM_010308)	-438	NM_001113384	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding
diff_RLAGL_Vector_cond1_945	chr10	27223690	27224105	+	5.61585	NA	intron (NM_008481, intron 18 of 63)	intron (NM_008481, intron 18 of 63)	-165969	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
diff_RLAGL_Vector_cond1_8310	chr6	49319026	49319382	+	5.61570	NA	promoter-TSS (NM_175098)	promoter-TSS (NM_175098)	-70	NM_001311112	57895	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding
diff_RLAGL_Vector_cond1_8827	chr7	13024111	13024373	+	5.61564	NA	promoter-TSS (NM_011588)	promoter-TSS (NM_011588)	90	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding
diff_RLAGL_Vector_cond1_9362	chr8	8225517	8225899	+	5.61560	NA	Intergenic	Intergenic	435065	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
diff_RLAGL_Vector_cond1_3241	chr14	79985226	79985561	+	5.61428	NA	Intergenic	Intergenic	-14909	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
diff_RLAGL_Vector_cond1_10058	chr9	46042442	46042681	+	5.61410	NA	intron (NM_027498, intron 1 of 24)	L1MD|LINE|L1	29741	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding
diff_RLAGL_Vector_cond1_7106	chr4	87230275	87230564	+	5.61409	NA	5' UTR (NM_172426, exon 1 of 11)	5' UTR (NM_172426, exon 1 of 11)	121	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
diff_RLAGL_Vector_cond1_7054	chr4	73791056	73791261	+	5.61348	NA	promoter-TSS (NM_001017427)	promoter-TSS (NM_001017427)	-86	NR_046041	667768	Mm.244966	NR_046041	ENSMUSG00000085034	Gm11240	OTTMUSG00000000286	predicted gene 11240	ncRNA
diff_RLAGL_Vector_cond1_5175	chr19	45783543	45783750	+	5.61319	NA	promoter-TSS (NM_023799)	promoter-TSS (NM_023799)	-355	NM_023799	76055	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	2810009A20Rik|4833427O07Rik|5830447M11Rik|AA408215|Hy5|Ncoat|OGA|mKIAA0679	meningioma expressed antigen 5 (hyaluronidase)	protein-coding
diff_RLAGL_Vector_cond1_10025	chr9	37544463	37544762	+	5.61275	NA	TTS (NM_020518)	TTS (NM_020518)	5357	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_1908	chr11	103966288	103967021	+	5.61246	NA	promoter-TSS (NM_007477)	promoter-TSS (NM_007477)	-71	NM_001304574	11841	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding
diff_RLAGL_Vector_cond1_8864	chr7	24394609	24394939	+	5.61178	NA	Intergenic	Intergenic	-4854	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_328	chr1	86526186	86526646	+	5.61142	NA	promoter-TSS (NM_008972)	promoter-TSS (NM_008972)	-320	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding
diff_RLAGL_Vector_cond1_5629	chr2	92375123	92375566	+	5.61083	NA	5' UTR (NM_145122, exon 1 of 11)	5' UTR (NM_145122, exon 1 of 11)	105	NM_145122	18633	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding
diff_RLAGL_Vector_cond1_1476	chr11	7545641	7545911	+	5.61056	NA	Intergenic	Intergenic	-331853	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_6054	chr2	170451017	170451306	+	5.61039	NA	Intergenic	Intergenic	-23316	NM_029815	76960	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding
diff_RLAGL_Vector_cond1_1194	chr10	83099004	83099287	+	5.60986	NA	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	113648	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding
diff_RLAGL_Vector_cond1_9796	chr8	116732456	116733442	+	5.60965	NA	promoter-TSS (NM_029441)	promoter-TSS (NM_029441)	42	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding
diff_RLAGL_Vector_cond1_713	chr1	177557848	177558208	+	5.60963	NA	Intergenic	Intergenic	84915	NR_037994	75589	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA
diff_RLAGL_Vector_cond1_3835	chr15	102458999	102459268	+	5.60934	NA	promoter-TSS (NM_025385)	promoter-TSS (NM_025385)	-37	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding
diff_RLAGL_Vector_cond1_471	chr1	129917362	129917621	+	5.60928	NA	intron (NM_172485, intron 13 of 27)	intron (NM_172485, intron 13 of 27)	505508	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding
diff_RLAGL_Vector_cond1_1646	chr11	51832568	51832793	+	5.60898	NA	intron (NM_199299, intron 4 of 11)	intron (NM_199299, intron 4 of 11)	24801	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding
diff_RLAGL_Vector_cond1_2538	chr13	8885473	8885786	+	5.60896	NA	promoter-TSS (NM_145360)	promoter-TSS (NM_145360)	23	NM_145360	319554	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik	isopentenyl-diphosphate delta isomerase	protein-coding
diff_RLAGL_Vector_cond1_4895	chr18	57593785	57593988	+	5.60818	NA	intron (NM_029290, intron 4 of 6)	intron (NM_029290, intron 4 of 6)	-41489	NR_015494	75084	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA
diff_RLAGL_Vector_cond1_5945	chr2	152816408	152816670	+	5.60624	NA	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	14178	NM_001289739	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding
diff_RLAGL_Vector_cond1_4264	chr17	13308388	13309079	+	5.60614	NA	Intergenic	Intergenic	-45839	NM_001167578	100041352	Mm.490251	NM_001167578	ENSMUSG00000052469	Tcp10c	D17Leh66C|D17Leh66ca|Gm9880|T66C-a|Tcp-10c	t-complex protein 10c	protein-coding
diff_RLAGL_Vector_cond1_3144	chr14	55590863	55591151	+	5.60584	NA	promoter-TSS (NM_001029855)	promoter-TSS (NM_001029855)	14	NM_011190	19188	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding
diff_RLAGL_Vector_cond1_5462	chr2	51753775	51754004	+	5.60504	NA	Intergenic	Intergenic	-21880	NR_040639	433426	Mm.244381	NR_040639	ENSMUSG00000085014	Gm13490	OTTMUSG00000012405	predicted gene 13490	ncRNA
diff_RLAGL_Vector_cond1_1734	chr11	70970748	70970947	+	5.60477	NA	promoter-TSS (NM_001083331)	promoter-TSS (NM_001083331)	647	NM_001252415	69723	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding
diff_RLAGL_Vector_cond1_717	chr1	178187287	178187763	+	5.60434	NA	5' UTR (NM_024282, exon 1 of 5)	5' UTR (NM_024282, exon 1 of 5)	108	NM_024282	78825	Mm.440132	NM_024282		Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding
diff_RLAGL_Vector_cond1_1203	chr10	84483632	84483937	+	5.60407	NA	Intergenic	Intergenic	-4509	NR_108059	75804		NR_108059	ENSMUSG00000020033	4930463O16Rik	-	RIKEN cDNA 4930463O16 gene	ncRNA
diff_RLAGL_Vector_cond1_1234	chr10	88860896	88861109	+	5.60382	NA	Intergenic	Intergenic	-24990	NM_145423	216225	Mm.77381	NM_145423	ENSMUSG00000020062	Slc5a8	Ait|SMCT	solute carrier family 5 (iodide transporter), member 8	protein-coding
diff_RLAGL_Vector_cond1_5676	chr2	106002971	106003436	+	5.60364	NA	non-coding (NR_033993, exon 1 of 4)	non-coding (NR_033993, exon 1 of 4)	346	NM_026992	99349	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ (Hsp40) homolog, subfamily C, member 24	protein-coding
diff_RLAGL_Vector_cond1_5096	chr19	15946684	15946905	+	5.60294	NA	Intergenic	RMER1B|Other|Other	-21735	NM_177420	107272	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_4062	chr16	59522030	59522474	+	5.60286	NA	intron (NM_174848, intron 13 of 18)	intron (NM_174848, intron 13 of 18)	33500	NM_174848	224273	Mm.246424	NM_174848		Crybg3	5031404N19|AU022790	beta-gamma crystallin domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_5527	chr2	66124223	66124459	+	5.60239	NA	intron (NM_015736, intron 1 of 10)	CpG	452	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
diff_RLAGL_Vector_cond1_6628	chr3	133555388	133555795	+	5.60203	NA	Intergenic	B4A|SINE|B4	-11201	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding
diff_RLAGL_Vector_cond1_3571	chr15	47759395	47759680	+	5.60124	NA	intron (NM_001081391, intron 32 of 70)	Lx8|LINE|L1	1032452	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding
diff_RLAGL_Vector_cond1_1976	chr11	117154186	117154422	+	5.60123	NA	intron (NM_028777, intron 13 of 16)	intron (NM_028777, intron 13 of 16)	39132	NR_029459	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding
diff_RLAGL_Vector_cond1_7254	chr4	120071877	120072216	+	5.60119	NA	intron (NM_010657, intron 3 of 8)	intron (NM_010657, intron 3 of 8)	-89378	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	VIC	endothelin 2	protein-coding
diff_RLAGL_Vector_cond1_1690	chr11	61494193	61494653	+	5.60004	NA	promoter-TSS (NM_011841)	promoter-TSS (NM_011841)	-157	NM_001291035	23939	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7	mitogen-activated protein kinase 7	protein-coding
diff_RLAGL_Vector_cond1_3936	chr16	33325913	33326305	+	5.59956	NA	Intergenic	Intergenic	54627	NR_045709	100502742	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA
diff_RLAGL_Vector_cond1_1331	chr10	111047955	111048361	+	5.59925	NA	Intergenic	MER110|LTR|ERV1	-38092	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding
diff_RLAGL_Vector_cond1_4590	chr17	73950089	73950491	+	5.59878	NA	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-94	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding
diff_RLAGL_Vector_cond1_2234	chr12	52097418	52097668	+	5.59844	NA	promoter-TSS (NM_029760)	promoter-TSS (NM_029760)	-203	NM_029760	76826	Mm.244781	NM_029760		Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding
diff_RLAGL_Vector_cond1_9323	chr7	143188696	143188900	+	5.59823	NA	intron (NM_008434, intron 6 of 15)	intron (NM_008434, intron 6 of 15)	81544	NM_008434	16535	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding
diff_RLAGL_Vector_cond1_8622	chr6	125528654	125528887	+	5.59753	NA	Intergenic	Intergenic	-24178	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor homolog	protein-coding
diff_RLAGL_Vector_cond1_3982	chr16	44026107	44026426	+	5.59655	NA	intron (NM_001172107, intron 1 of 12)	RMER20B|LTR|ERVK	1679	NM_001172107	207798	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding
diff_RLAGL_Vector_cond1_3420	chr15	4718299	4718522	+	5.59655	NA	Intergenic	MERVL_2A-int|LTR|ERVL	-8800	NM_016704	12274	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding
diff_RLAGL_Vector_cond1_6114	chr2	178685274	178685479	+	5.59639	NA	Intergenic	Intergenic	254861	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding
diff_RLAGL_Vector_cond1_5481	chr2	57252885	57253221	+	5.59626	NA	intron (NM_010274, intron 1 of 16)	intron (NM_010274, intron 1 of 16)	14671	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_5386	chr2	31662895	31663204	+	5.59597	NA	Intergenic	RMER20C_Mm|LTR|ERVK	-7688	NM_144886	227715	Mm.150972	NM_144886	ENSMUSG00000039356	Exosc2	Rrp4	exosome component 2	protein-coding
diff_RLAGL_Vector_cond1_9354	chr8	6438880	6439079	+	5.59518	NA	Intergenic	Lx8|LINE|L1	-1333747	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
diff_RLAGL_Vector_cond1_10052	chr9	44490650	44490948	+	5.59516	NA	Intergenic	Intergenic	-8337	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding
diff_RLAGL_Vector_cond1_1524	chr11	18747629	18747899	+	5.59511	NA	Intergenic	Intergenic	271205	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_4475	chr17	50545309	50545575	+	5.59439	NA	intron (NM_013880, intron 1 of 5)	Lx7|LINE|L1	35895	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding
diff_RLAGL_Vector_cond1_8922	chr7	38236818	38237068	+	5.59369	NA	Intergenic	RLTRETN_Mm|LTR|ERVK	-8949	NM_024413	72287	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding
diff_RLAGL_Vector_cond1_3892	chr16	20942006	20942274	+	5.59294	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-207629	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding
diff_RLAGL_Vector_cond1_1799	chr11	86484337	86484664	+	5.59220	NA	promoter-TSS (NM_029788)	promoter-TSS (NM_029788)	-157	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding
diff_RLAGL_Vector_cond1_3714	chr15	78899695	78899899	+	5.59207	NA	promoter-TSS (NM_001316684)	promoter-TSS (NM_001316684)	29	NM_001316686	20401	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9669	chr8	83215128	83215475	+	5.59100	NA	intron (NM_001111304, intron 2 of 20)	intron (NM_001111304, intron 2 of 20)	49949	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding
diff_RLAGL_Vector_cond1_10288	chr9	108002497	108002906	+	5.58975	NA	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	53	NM_013785	27399	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding
diff_RLAGL_Vector_cond1_2516	chr13	4206181	4206753	+	5.58930	NA	TTS (NM_013778)	TTS (NM_013778)	15280	NM_013778	27384	Mm.27447	NM_013778	ENSMUSG00000021213	Akr1c13	mKIAA4014	aldo-keto reductase family 1, member C13	protein-coding
diff_RLAGL_Vector_cond1_1841	chr11	95210762	95211046	+	5.58925	NA	Intergenic	Intergenic	-50625	NM_053093	93670	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding
diff_RLAGL_Vector_cond1_9505	chr8	44934825	44935102	+	5.58879	NA	Intergenic	CpG	-15245	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9023	chr7	65880660	65880941	+	5.58846	NA	intron (NM_001291184, intron 1 of 20)	L1ME2z|LINE|L1	18664	NM_001291184	18553	Mm.294007	NM_011048	ENSMUSG00000030513	Pcsk6	C86343|Pace4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
diff_RLAGL_Vector_cond1_79	chr1	21079413	21079771	+	5.58826	NA	promoter-TSS (NM_177409)	promoter-TSS (NM_177409)	-367	NM_177409	170829	Mm.185680	NM_177409		Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding
diff_RLAGL_Vector_cond1_1975	chr11	117138447	117138687	+	5.58806	NA	intron (NM_028777, intron 2 of 16)	intron (NM_028777, intron 2 of 16)	23395	NR_029459	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding
diff_RLAGL_Vector_cond1_8651	chr6	128941958	128942338	+	5.58733	NA	intron (NM_027562, intron 1 of 6)	(GA)n|Simple_repeat|Simple_repeat	7767	NM_027562	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding
diff_RLAGL_Vector_cond1_3362	chr14	118473768	118474165	+	5.58519	NA	Intergenic	CpG	108088	NR_045624	73306	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA
diff_RLAGL_Vector_cond1_8119	chr5	150196299	150196535	+	5.58456	NA	Intergenic	Intergenic	-63513	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	furry homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3975	chr16	43081407	43081620	+	5.58300	NA	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	125933	NR_002445	170658	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo
diff_RLAGL_Vector_cond1_6382	chr3	69222607	69222816	+	5.58184	NA	exon (NM_027843, exon 1 of 1)	exon (NM_027843, exon 1 of 1)	292	NM_027843	71619	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding
diff_RLAGL_Vector_cond1_5336	chr2	21259134	21259362	+	5.58179	NA	Intergenic	Intergenic	53524	NM_001001297	208967	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding
diff_RLAGL_Vector_cond1_3230	chr14	78848626	78849345	+	5.58166	NA	promoter-TSS (NM_027906)	promoter-TSS (NM_027906)	-193	NM_027906	219189	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding
diff_RLAGL_Vector_cond1_7348	chr4	134726086	134726327	+	5.58139	NA	Intergenic	Intergenic	-21916	NM_207237	230815	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding
diff_RLAGL_Vector_cond1_5637	chr2	93187361	93187632	+	5.58065	NA	promoter-TSS (NM_001025246)	promoter-TSS (NM_001025246)	-88	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding
diff_RLAGL_Vector_cond1_1723	chr11	69671291	69671502	+	5.57996	NA	intron (NM_144958, intron 1 of 10)	CpG	1027	NM_001159375	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding
diff_RLAGL_Vector_cond1_3745	chr15	85669903	85670325	+	5.57974	NA	Intergenic	Intergenic	-33659	NR_110483	102800312	Mm.33117	NR_110483		Lincppara	Mirlet7bhg|linc-Ppara	long intergenic noncoding RNA near Ppara	ncRNA
diff_RLAGL_Vector_cond1_874	chr10	9718173	9718392	+	5.57798	NA	Intergenic	Intergenic	33560	NR_038036	620417	Mm.378085	NR_038036		Gm6150	-	predicted gene 6150	ncRNA
diff_RLAGL_Vector_cond1_217	chr1	64737826	64738060	+	5.57791	NA	promoter-TSS (NM_022721)	promoter-TSS (NM_022721)	-193	NM_001042659	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled homolog 5 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2882	chr13	97533814	97534081	+	5.57675	NA	Intergenic	(TTTTC)n|Simple_repeat|Simple_repeat	-26053	NR_046157	328314	Mm.138047	NR_046157		Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA
diff_RLAGL_Vector_cond1_3277	chr14	99046229	99046665	+	5.57620	NA	promoter-TSS (NM_175245)	promoter-TSS (NM_175245)	70	NM_175265	77744	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding
diff_RLAGL_Vector_cond1_2482	chr12	117524387	117524625	+	5.57524	NA	intron (NM_175930, intron 2 of 27)	intron (NM_175930, intron 2 of 27)	8027	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
diff_RLAGL_Vector_cond1_2202	chr12	40979148	40979390	+	5.57510	NA	Intergenic	Intergenic	-44821	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_2670	chr13	51100760	51101152	+	5.57482	NA	promoter-TSS (NM_001283029)	promoter-TSS (NM_001283029)	76	NM_001283028	20729	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding
diff_RLAGL_Vector_cond1_8385	chr6	67013947	67014214	+	5.57456	NA	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-22519	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA
diff_RLAGL_Vector_cond1_8030	chr5	135264035	135264377	+	5.57359	NA	Intergenic	Intergenic	-13159	NM_010246	14371	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled homolog 9 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4255	chr17	12205770	12206061	+	5.57353	NA	intron (NM_026644, intron 3 of 8)	intron (NM_026644, intron 3 of 8)	86631	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding
diff_RLAGL_Vector_cond1_9453	chr8	33731673	33731947	+	5.57304	NA	promoter-TSS (NM_001167922)	promoter-TSS (NM_001167922)	-104	NM_001167921	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding
diff_RLAGL_Vector_cond1_9333	chr8	3493074	3493353	+	5.57057	NA	promoter-TSS (NM_080461)	promoter-TSS (NM_080461)	75	NM_080461	140482	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding
diff_RLAGL_Vector_cond1_6172	chr3	14620076	14620458	+	5.57047	NA	Intergenic	Intergenic	-9011	NM_001099674	69126	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding
diff_RLAGL_Vector_cond1_10593	chrX	159532369	159532739	+	5.57008	NA	promoter-TSS (NM_001033472)	promoter-TSS (NM_001033472)	-114	NM_001033472	382252	Mm.296254	NM_001033472	ENSMUSG00000044150	A830080D01Rik	2310067E24Rik|Gm1146	RIKEN cDNA A830080D01 gene	protein-coding
diff_RLAGL_Vector_cond1_3908	chr16	25395986	25396279	+	5.57006	NA	intron (NM_175165, intron 4 of 5)	intron (NM_175165, intron 4 of 5)	109315	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding
diff_RLAGL_Vector_cond1_9458	chr8	35293274	35293610	+	5.56970	NA	Intergenic	L2a|LINE|L2	-82299	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding
diff_RLAGL_Vector_cond1_6543	chr3	115641451	115641723	+	5.56879	NA	Intergenic	Lx8|LINE|L1	73468	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding
diff_RLAGL_Vector_cond1_9502	chr8	44377826	44378056	+	5.56852	NA	Intergenic	Intergenic	-572267	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7408	chr4	142838212	142838449	+	5.56851	NA	Intergenic	Intergenic	297832	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA
diff_RLAGL_Vector_cond1_9513	chr8	46446038	46446594	+	5.56851	NA	Intergenic	Intergenic	-24721	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding
diff_RLAGL_Vector_cond1_5153	chr19	38395681	38395881	+	5.56775	NA	promoter-TSS (NM_175507)	promoter-TSS (NM_175507)	-199	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding
diff_RLAGL_Vector_cond1_7230	chr4	115088653	115088910	+	5.56733	NA	promoter-TSS (NM_001164558)	promoter-TSS (NM_001164558)	73	NM_001164558	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_7288	chr4	126202275	126202477	+	5.56575	NA	intron (NM_146153, intron 1 of 10)	CpG	334	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding
diff_RLAGL_Vector_cond1_311	chr1	82815738	82815966	+	5.56559	NA	Intergenic	Intergenic	-23608	NM_010472	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding
diff_RLAGL_Vector_cond1_5559	chr2	76070437	76070642	+	5.56556	NA	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-88572	NM_030188	78802	Mm.282339	NM_030188		Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding
diff_RLAGL_Vector_cond1_9951	chr9	21091915	21092382	+	5.56550	NA	promoter-TSS (NM_027911)	promoter-TSS (NM_027911)	-140	NR_038081	100568458	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA
diff_RLAGL_Vector_cond1_6320	chr3	57424992	57425303	+	5.56524	NA	promoter-TSS (NM_145539)	promoter-TSS (NM_145539)	-263	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding
diff_RLAGL_Vector_cond1_4599	chr17	75391858	75392197	+	5.56455	NA	3' UTR (NM_019919, exon 34 of 34)	3' UTR (NM_019919, exon 34 of 34)	-43878	NM_001166493	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding
diff_RLAGL_Vector_cond1_4675	chr17	88195724	88196204	+	5.56422	NA	Intergenic	ERVL-B4-int|LTR|ERVL	70452	NM_001190356	225058	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding
diff_RLAGL_Vector_cond1_133	chr1	37041184	37041403	+	5.56373	NA	Intergenic	Intergenic	-101766	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding
diff_RLAGL_Vector_cond1_4828	chr18	38080838	38081053	+	5.56290	NA	Intergenic	Intergenic	-81976	NM_001205336	106952	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
diff_RLAGL_Vector_cond1_258	chr1	72226348	72226710	+	5.56271	NA	Intergenic	B1_Mus1|SINE|Alu	-14222	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding
diff_RLAGL_Vector_cond1_1108	chr10	70060855	70061109	+	5.56240	NA	Intergenic	Intergenic	-36139	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_7950	chr5	116123403	116123623	+	5.56219	NA	Intergenic	Intergenic	-40267	NM_001101546	545798	Mm.483995	NM_001101546		Tmem233	DSPB2|Gm13843|OTTMUSG00000014722	transmembrane protein 233	protein-coding
diff_RLAGL_Vector_cond1_3686	chr15	73687632	73687831	+	5.56199	NA	Intergenic	Intergenic	19774	NM_173365	239530	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding
diff_RLAGL_Vector_cond1_2498	chr12	118848538	118848781	+	5.56039	NA	exon (NM_177082, exon 3 of 3)	exon (NM_177082, exon 3 of 3)	2330	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding
diff_RLAGL_Vector_cond1_6957	chr4	47353039	47353359	+	5.55912	NA	promoter-TSS (NM_009370)	promoter-TSS (NM_009370)	-23	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding
diff_RLAGL_Vector_cond1_2970	chr13	118387159	118387415	+	5.55862	NA	promoter-TSS (NM_021556)	promoter-TSS (NM_021556)	-35	NM_021556	59054	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding
diff_RLAGL_Vector_cond1_5421	chr2	39373070	39373374	+	5.55709	NA	Intergenic	Intergenic	-146884	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding
diff_RLAGL_Vector_cond1_5168	chr19	43524586	43524840	+	5.55663	NA	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-108	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding
diff_RLAGL_Vector_cond1_5207	chr19	53421164	53421642	+	5.55650	NA	Intergenic	Intergenic	-30830	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4253	chr17	11973519	11973775	+	5.55607	NA	intron (NM_016694, intron 9 of 11)	intron (NM_016694, intron 9 of 11)	-90458	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA
diff_RLAGL_Vector_cond1_2418	chr12	105748004	105748324	+	5.55571	NA	intron (NM_030187, intron 12 of 17)	URR1A|DNA|hAT-Charlie	-36538	NM_011112	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding
diff_RLAGL_Vector_cond1_1082	chr10	60790983	60791230	+	5.55495	NA	intron (NM_029770, intron 1 of 16)	intron (NM_029770, intron 1 of 16)	-38324	NM_023596	71279	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding
diff_RLAGL_Vector_cond1_7819	chr5	87000703	87000947	+	5.55308	NA	promoter-TSS (NM_172881)	promoter-TSS (NM_172881)	-35	NM_172881	243085	Mm.312095	NM_172881	ENSMUSG00000035811	Ugt2b35	C730031G17	UDP glucuronosyltransferase 2 family, polypeptide B35	protein-coding
diff_RLAGL_Vector_cond1_9142	chr7	99141095	99141585	+	5.55225	NA	promoter-TSS (NM_178635)	promoter-TSS (NM_178635)	-196	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding
diff_RLAGL_Vector_cond1_9016	chr7	64392482	64392850	+	5.55209	NA	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	-105	NM_028626	73724	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding
diff_RLAGL_Vector_cond1_1707	chr11	64978714	64979377	+	5.55164	NA	promoter-TSS (NM_023479)	promoter-TSS (NM_023479)	10	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC homolog 2 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_5049	chr19	4615071	4615484	+	5.55118	NA	5' UTR (NM_153388, exon 1 of 3)	5' UTR (NM_153388, exon 1 of 3)	390	NM_153388	225875	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_8616	chr6	124857098	124857439	+	5.55114	NA	exon (NM_013534, exon 1 of 15)	exon (NM_013534, exon 1 of 15)	419	NM_013534	14789	Mm.9002	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding
diff_RLAGL_Vector_cond1_9617	chr8	71857508	71857716	+	5.55072	NA	Intergenic	Intergenic	-24456	NM_145624	236193	Mm.290790	NM_145624		Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding
diff_RLAGL_Vector_cond1_5747	chr2	121449043	121449351	+	5.55055	NA	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	-1	NM_011354	378702	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding
diff_RLAGL_Vector_cond1_10242	chr9	97307949	97308328	+	5.55038	NA	Intergenic	Intergenic	61820	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
diff_RLAGL_Vector_cond1_4889	chr18	55037230	55037468	+	5.55013	NA	Intergenic	Intergenic	-47169	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
diff_RLAGL_Vector_cond1_3646	chr15	64922307	64922574	+	5.55004	NA	promoter-TSS (NM_009623)	promoter-TSS (NM_009623)	-144	NM_009623	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding
diff_RLAGL_Vector_cond1_3107	chr14	46260378	46260638	+	5.55002	NA	Intergenic	Intergenic	-119016	NR_037981	100041724	Mm.383311	NM_001099324	ENSMUSG00000079261	Gm15217	OTTMUSG00000019524	predicted gene 15217	ncRNA
diff_RLAGL_Vector_cond1_3634	chr15	62079320	62079711	+	5.54920	NA	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	40258	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA
diff_RLAGL_Vector_cond1_8124	chr5	151003559	151003801	+	5.54872	NA	Intergenic	Intergenic	51073	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding
diff_RLAGL_Vector_cond1_10396	chrX	9244714	9244943	+	5.54727	NA	intron (NM_173414, intron 1 of 4)	intron (NM_173414, intron 1 of 4)	-27956	NM_023500	22439	Mm.56468	NM_023500	ENSMUSG00000015342	Xk	1810038K19Rik|XRG1|Xkh	Kell blood group precursor (McLeod phenotype) homolog	protein-coding
diff_RLAGL_Vector_cond1_3597	chr15	54294939	54295291	+	5.54618	NA	Intergenic	Intergenic	-16631	NM_008764	18383	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding
diff_RLAGL_Vector_cond1_1762	chr11	77493089	77493301	+	5.54617	NA	promoter-TSS (NM_001004144)	promoter-TSS (NM_001004144)	-217	NM_001004144	216963	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding
diff_RLAGL_Vector_cond1_304	chr1	82194993	82195289	+	5.54588	NA	Intergenic	Intergenic	63225	NR_105762	102466629		NR_105762	ENSMUSG00000098797	Mir6344	Gm27840|mmu-mir-6344	microRNA 6344	ncRNA
diff_RLAGL_Vector_cond1_1563	chr11	26593620	26594067	+	5.54485	NA	promoter-TSS (NM_027260)	promoter-TSS (NM_027260)	77	NM_027260	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding
diff_RLAGL_Vector_cond1_3040	chr14	21987935	21988189	+	5.54392	NA	5' UTR (NM_145459, exon 2 of 3)	5' UTR (NM_145459, exon 2 of 3)	1539	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding
diff_RLAGL_Vector_cond1_7905	chr5	109558166	109558874	+	5.54387	NA	intron (NM_001310694, intron 1 of 7)	intron (NM_001310694, intron 1 of 7)	473	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding
diff_RLAGL_Vector_cond1_3929	chr16	31509133	31509335	+	5.54351	NA	Intergenic	Intergenic	80481	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding
diff_RLAGL_Vector_cond1_5768	chr2	125723952	125724254	+	5.54349	NA	promoter-TSS (NM_199022)	promoter-TSS (NM_199022)	45	NM_199022	271849	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding
diff_RLAGL_Vector_cond1_6398	chr3	75475183	75475414	+	5.54227	NA	Intergenic	Intergenic	81554	NM_019745	56426	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding
diff_RLAGL_Vector_cond1_7725	chr5	52339120	52339523	+	5.54187	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-24483	NM_011435	20657	Mm.2407	NM_011435		Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding
diff_RLAGL_Vector_cond1_4888	chr18	54948158	54948443	+	5.54178	NA	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	41880	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
diff_RLAGL_Vector_cond1_10605	chrX	162759964	162760206	+	5.54175	NA	promoter-TSS (NM_009031)	promoter-TSS (NM_009031)	-287	NM_009031	245688	Mm.270186	NM_009031	ENSMUSG00000031353	Rbbp7	AA409861|AI173248|AU019541|BB114024|mRbAp46	retinoblastoma binding protein 7	protein-coding
diff_RLAGL_Vector_cond1_10401	chrX	13025647	13025869	+	5.54167	NA	Intergenic	Intergenic	-16257	NR_038158	70489	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA
diff_RLAGL_Vector_cond1_4647	chr17	84137689	84137987	+	5.54153	NA	Intergenic	Intergenic	50109	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding
diff_RLAGL_Vector_cond1_1721	chr11	69632602	69632966	+	5.54145	NA	promoter-TSS (NM_011814)	promoter-TSS (NM_011814)	-187	NM_011814	23879	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding
diff_RLAGL_Vector_cond1_7790	chr5	74261069	74261270	+	5.54091	NA	intron (NM_001286437, intron 5 of 7)	intron (NM_001286437, intron 5 of 7)	65843	NM_026878	68939	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding
diff_RLAGL_Vector_cond1_82	chr1	21240255	21240611	+	5.54024	NA	promoter-TSS (NM_010356)	promoter-TSS (NM_010356)	-152	NM_001077353	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding
diff_RLAGL_Vector_cond1_6711	chr3	148428967	148429642	+	5.53991	NA	Intergenic	Intergenic	525331	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_8609	chr6	122571364	122571780	+	5.53969	NA	Intergenic	MIR|SINE|MIR	17763	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding
diff_RLAGL_Vector_cond1_6608	chr3	130549121	130549386	+	5.53874	NA	intron (NM_001244952, intron 20 of 35)	intron (NM_001244952, intron 20 of 35)	-68195	NM_001163587	71760	Mm.29125	NM_027907		Etnppl	1300019H02Rik|AI195447|Agxt2l1	ethanolamine phosphate phospholyase	protein-coding
diff_RLAGL_Vector_cond1_7251	chr4	118543632	118544043	+	5.53738	NA	promoter-TSS (NM_172383)	promoter-TSS (NM_172383)	-111	NM_172383	230678	Mm.23639	NM_172383	ENSMUSG00000050854	Tmem125	6330530A05Rik|AV223516	transmembrane protein 125	protein-coding
diff_RLAGL_Vector_cond1_6344	chr3	62084133	62084423	+	5.53719	NA	Intergenic	Intergenic	-254499	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding
diff_RLAGL_Vector_cond1_4489	chr17	54310927	54311234	+	5.53717	NA	Intergenic	Intergenic	-12046	NM_022025	63993	Mm.155241	NM_022025	ENSMUSG00000023945	Slc5a7	CHT1	solute carrier family 5 (choline transporter), member 7	protein-coding
diff_RLAGL_Vector_cond1_3319	chr14	103650654	103651026	+	5.53717	NA	exon (NM_198014, exon 1 of 7)	exon (NM_198014, exon 1 of 7)	597	NM_198014	105439	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding
diff_RLAGL_Vector_cond1_2648	chr13	41343203	41343420	+	5.53693	NA	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	15690	NM_017464	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding
diff_RLAGL_Vector_cond1_9369	chr8	9976370	9976650	+	5.53597	NA	promoter-TSS (NM_176953)	promoter-TSS (NM_176953)	-187	NM_176953	319583	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding
diff_RLAGL_Vector_cond1_7840	chr5	95864793	95865095	+	5.53570	NA	Intergenic	Intergenic	72305	NM_001167793	100041354	Mm.422721	NM_001122678	ENSMUSG00000079423	Gm3286	-	predicted gene 3286	protein-coding
diff_RLAGL_Vector_cond1_4817	chr18	35930405	35930896	+	5.53541	NA	Intergenic	CpG	-34180	NM_028707	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_2773	chr13	67483755	67483996	+	5.53452	NA	intron (NM_001076791, intron 1 of 3)	intron (NM_001076791, intron 1 of 3)	378	NM_001076791	408067	Mm.315879	NM_001076791	ENSMUSG00000059839	Zfp874b	9630025I21Rik|Rslcan16	zinc finger protein 874b	protein-coding
diff_RLAGL_Vector_cond1_4815	chr18	35829638	35829906	+	5.53435	NA	promoter-TSS (NM_133687)	promoter-TSS (NM_133687)	-46	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding
diff_RLAGL_Vector_cond1_2561	chr13	13784188	13784402	+	5.53355	NA	promoter-TSS (NM_010317)	promoter-TSS (NM_010317)	-12	NM_010317	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding
diff_RLAGL_Vector_cond1_2177	chr12	36042198	36042878	+	5.53318	NA	promoter-TSS (NM_025359)	promoter-TSS (NM_025359)	-60	NM_025359	66109	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding
diff_RLAGL_Vector_cond1_2247	chr12	54696631	54696903	+	5.53292	NA	promoter-TSS (NM_025456)	promoter-TSS (NM_025456)	-902	NM_025456	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding
diff_RLAGL_Vector_cond1_3296	chr14	101469591	101469891	+	5.52990	NA	intron (NM_001081278, intron 10 of 18)	intron (NM_001081278, intron 10 of 18)	139450	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding
diff_RLAGL_Vector_cond1_10316	chr9	115053794	115054007	+	5.52969	NA	Intergenic	Intergenic	-13379	NM_148958	74486	Mm.458474	NM_148958	ENSMUSG00000040875	Osbpl10	4933433D06Rik|C820004B04Rik|OPR-10|ORP-10	oxysterol binding protein-like 10	protein-coding
diff_RLAGL_Vector_cond1_8173	chr6	12787320	12787530	+	5.52961	NA	Intergenic	MLTR18D_MM|LTR|ERVK	-38172	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding
diff_RLAGL_Vector_cond1_10515	chrX	108834464	108834706	+	5.52956	NA	promoter-TSS (NM_001081477)	promoter-TSS (NM_001081477)	107	NR_015493	69964	Mm.160066	NR_015493	ENSMUSG00000086629	2810403D21Rik	1810022M18Rik|4632410B05Rik|AU017716	RIKEN cDNA 2810403D21 gene	ncRNA
diff_RLAGL_Vector_cond1_6526	chr3	107986383	107986767	+	5.52874	NA	promoter-TSS (NM_008183)	promoter-TSS (NM_008183)	-139	NM_008183	14863	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding
diff_RLAGL_Vector_cond1_4198	chr16	92493909	92494261	+	5.52860	NA	intron (NM_029740, intron 2 of 2)	intron (NM_029740, intron 2 of 2)	-4062	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding
diff_RLAGL_Vector_cond1_2389	chr12	101028864	101029130	+	5.52567	NA	promoter-TSS (NM_026681)	promoter-TSS (NM_026681)	-14	NM_026681	68339	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding
diff_RLAGL_Vector_cond1_3789	chr15	95752397	95752645	+	5.52499	NA	promoter-TSS (NR_131148)	promoter-TSS (NR_131148)	-930	NR_131148	629300	Mm.247258	NR_131148		Gm6961	EG629300	predicted gene 6961	ncRNA
diff_RLAGL_Vector_cond1_4922	chr18	65430479	65430837	+	5.52443	NA	promoter-TSS (NM_172833)	promoter-TSS (NM_172833)	-339	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik	MALT1 paracaspase	protein-coding
diff_RLAGL_Vector_cond1_2361	chr12	90738895	90739105	+	5.52360	NA	promoter-TSS (NM_010050)	promoter-TSS (NM_010050)	-562	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding
diff_RLAGL_Vector_cond1_10122	chr9	63667097	63667441	+	5.52287	NA	intron (NM_016769, intron 3 of 8)	intron (NM_016769, intron 3 of 8)	64614	NM_025857	66939	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding
diff_RLAGL_Vector_cond1_9296	chr7	138538254	138538500	+	5.52252	NA	Intergenic	Intergenic	-15865	NR_131022	75187	Mm.410810	NR_131022		4930543N07Rik	-	RIKEN cDNA 4930543N07 gene	ncRNA
diff_RLAGL_Vector_cond1_5742	chr2	119744609	119744821	+	5.52142	NA	intron (NM_146125, intron 1 of 6)	intron (NM_146125, intron 1 of 6)	2378	NM_146125	228550	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding
diff_RLAGL_Vector_cond1_559	chr1	147930731	147930957	+	5.52117	NA	Intergenic	RLTR22_Mus|LTR|ERVK	1433157	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_9179	chr7	107686014	107686279	+	5.52077	NA	intron (NM_001163557, intron 5 of 25)	(CGGGG)n|Simple_repeat|Simple_repeat	71886	NM_177216	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding
diff_RLAGL_Vector_cond1_8202	chr6	18372572	18373261	+	5.52050	NA	intron (NM_080285, intron 22 of 22)	intron (NM_080285, intron 22 of 22)	141909	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_2123	chr12	24252178	24252710	+	5.51975	NA	Intergenic	CpG	-155175	NM_001256489	66808	Mm.379124	NM_001256489		9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding
diff_RLAGL_Vector_cond1_7667	chr5	41708076	41708285	+	5.51872	NA	promoter-TSS (NR_132325)	promoter-TSS (NR_132325)	-1	NM_001310590	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_6504	chr3	103101992	103102215	+	5.51840	NA	Intergenic	Intergenic	-25453	NM_177857	329727	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding
diff_RLAGL_Vector_cond1_4348	chr17	27839909	27840143	+	5.51831	NA	promoter-TSS (NM_011432)	promoter-TSS (NM_011432)	-61	NM_011432	20630	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding
diff_RLAGL_Vector_cond1_10007	chr9	35412440	35412723	+	5.51823	NA	Intergenic	Intergenic	-39495	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding
diff_RLAGL_Vector_cond1_10289	chr9	108049039	108049299	+	5.51802	NA	promoter-TSS (NM_177910)	promoter-TSS (NM_177910)	-121	NM_177910	331026	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding
diff_RLAGL_Vector_cond1_5894	chr2	146511983	146512350	+	5.51796	NA	promoter-TSS (NM_001033348)	promoter-TSS (NM_001033348)	-162	NM_001033348	241694	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding
diff_RLAGL_Vector_cond1_2323	chr12	79191761	79192032	+	5.51737	NA	promoter-TSS (NM_021557)	promoter-TSS (NM_021557)	-77	NM_021557	17252	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c	retinol dehydrogenase 11	protein-coding
diff_RLAGL_Vector_cond1_61	chr1	16619158	16619526	+	5.51640	NA	promoter-TSS (NM_001271017)	promoter-TSS (NM_001271017)	-4	NR_073122	66799	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding
diff_RLAGL_Vector_cond1_169	chr1	46003609	46004025	+	5.51463	NA	Intergenic	Intergenic	26620	NR_037691	212225	Mm.78540	NM_172504	ENSMUSG00000044457	Stk-ps2	4930509O22|EG212225|Gm4776	serine/threonine kinase 2	pseudo
diff_RLAGL_Vector_cond1_1135	chr10	77024235	77024455	+	5.51272	NA	Intergenic	ORR1G|LTR|ERVL-MaLR	-8394	NM_001199271	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding
diff_RLAGL_Vector_cond1_149	chr1	42491253	42491482	+	5.51224	NA	Intergenic	Intergenic	203458	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
diff_RLAGL_Vector_cond1_3876	chr16	16052787	16053048	+	5.51165	NA	intron (NM_146068, intron 6 of 19)	intron (NM_146068, intron 6 of 19)	93934	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding
diff_RLAGL_Vector_cond1_1315	chr10	107493353	107493593	+	5.51164	NA	intron (NM_008657, intron 2 of 2)	intron (NM_008657, intron 2 of 2)	1256	NM_008657	17878	Mm.11	NM_008657	ENSMUSG00000035923	Myf6	MRF4|bHLHc4|herculin	myogenic factor 6	protein-coding
diff_RLAGL_Vector_cond1_229	chr1	66792957	66793208	+	5.51146	NA	intron (NM_001122738, intron 2 of 14)	L1MA7|LINE|L1	24513	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding
diff_RLAGL_Vector_cond1_6653	chr3	141838986	141839200	+	5.51094	NA	3' UTR (NM_007560, exon 11 of 11)	3' UTR (NM_007560, exon 11 of 11)	92495	NM_001277218	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding
diff_RLAGL_Vector_cond1_198	chr1	58445413	58445678	+	5.51075	NA	promoter-TSS (NM_027351)	promoter-TSS (NM_027351)	-59	NM_001285826	70225	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding
diff_RLAGL_Vector_cond1_4438	chr17	45872431	45872654	+	5.51010	NA	Intergenic	Intergenic	-138698	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding
diff_RLAGL_Vector_cond1_2971	chr13	118441399	118441675	+	5.50960	NA	Intergenic	Intergenic	-54285	NM_021556	59054	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding
diff_RLAGL_Vector_cond1_10589	chrX	157491700	157491971	+	5.50945	NA	intron (NM_009214, intron 1 of 10)	CpG	211	NM_009214	20603	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding
diff_RLAGL_Vector_cond1_10241	chr9	97018678	97019080	+	5.50888	NA	promoter-TSS (NM_145134)	promoter-TSS (NM_145134)	-524	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding
diff_RLAGL_Vector_cond1_2263	chr12	58306613	58306831	+	5.50857	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-37464	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
diff_RLAGL_Vector_cond1_4481	chr17	51832483	51832819	+	5.50684	NA	promoter-TSS (NM_009122)	promoter-TSS (NM_009122)	-4	NM_009122	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_3116	chr14	48446040	48446334	+	5.50590	NA	promoter-TSS (NR_132324)	promoter-TSS (NR_132324)	64	NM_001310584	218989	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding
diff_RLAGL_Vector_cond1_4854	chr18	43724931	43725137	+	5.50540	NA	Intergenic	Intergenic	12203	NM_009258	20730	Mm.272	NM_009258	ENSMUSG00000024503	Spink1	Spink3|p12	serine peptidase inhibitor, Kazal type 1	protein-coding
diff_RLAGL_Vector_cond1_7139	chr4	96565806	96566055	+	5.50402	NA	Intergenic	Intergenic	-12279	NM_010008	13110	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding
diff_RLAGL_Vector_cond1_8394	chr6	71012786	71013007	+	5.50340	NA	Intergenic	CpG	56290	NM_001101464	232077	Mm.297656	NM_001101464	ENSMUSG00000055874	Foxi3	-	forkhead box I3	protein-coding
diff_RLAGL_Vector_cond1_3750	chr15	87545256	87545478	+	5.50331	NA	intron (NM_001252310, intron 1 of 3)	intron (NM_001252310, intron 1 of 3)	1068	NM_001252310	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding
diff_RLAGL_Vector_cond1_4476	chr17	50682691	50683014	+	5.50256	NA	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-15829	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding
diff_RLAGL_Vector_cond1_5537	chr2	68421171	68421445	+	5.50185	NA	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	50673	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding
diff_RLAGL_Vector_cond1_5365	chr2	26910561	26910779	+	5.50173	NA	promoter-TSS (NM_013721)	promoter-TSS (NM_013721)	-28	NM_001033908	20933	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding
diff_RLAGL_Vector_cond1_6036	chr2	168589893	168590095	+	5.50068	NA	intron (NM_001291172, intron 1 of 6)	intron (NM_001291172, intron 1 of 6)	371	NM_001136073	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding
diff_RLAGL_Vector_cond1_7112	chr4	88641266	88642045	+	5.50001	NA	Intergenic	Intergenic	2804	NM_177347	230396	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding
diff_RLAGL_Vector_cond1_1088	chr10	62651107	62651358	+	5.49958	NA	promoter-TSS (NM_053183)	promoter-TSS (NM_053183)	-34	NM_053183	94213	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding
diff_RLAGL_Vector_cond1_5064	chr19	6334691	6334957	+	5.49815	NA	promoter-TSS (NM_001168488)	promoter-TSS (NM_001168488)	-155	NM_001168488	17283	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding
diff_RLAGL_Vector_cond1_8034	chr5	135632579	135632784	+	5.49737	NA	promoter-TSS (NM_146002)	promoter-TSS (NM_146002)	27	NM_146002	215160	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_6024	chr2	166790901	166791100	+	5.49692	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-2767	NM_023815	76367	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding
diff_RLAGL_Vector_cond1_6421	chr3	83055159	83055683	+	5.49570	NA	promoter-TSS (NM_016784)	promoter-TSS (NM_016784)	-117	NM_016784	53317	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	protein-coding
diff_RLAGL_Vector_cond1_9775	chr8	111536349	111536603	+	5.49557	NA	promoter-TSS (NM_001168622)	promoter-TSS (NM_001168622)	-164	NM_001168621	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding
diff_RLAGL_Vector_cond1_6921	chr4	34499174	34499395	+	5.49515	NA	Intergenic	Intergenic	-51331	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding
diff_RLAGL_Vector_cond1_9176	chr7	106733876	106734197	+	5.49444	NA	Intergenic	RLTR22_Mur|LTR|ERVK	7920	NM_146599	258592	Mm.377582	NM_146599	ENSMUSG00000051591	Olfr697	MOR283-5	olfactory receptor 697	protein-coding
diff_RLAGL_Vector_cond1_6308	chr3	55227223	55227624	+	5.49419	NA	Intergenic	Intergenic	-15103	NM_001111053	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding
diff_RLAGL_Vector_cond1_432	chr1	118458323	118458597	+	5.49362	NA	TTS (NR_027901)	TTS (NR_027901)	805	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA
diff_RLAGL_Vector_cond1_8965	chr7	46639689	46640002	+	5.49280	NA	promoter-TSS (NM_013789)	promoter-TSS (NM_013789)	-38	NM_013789	27414	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
diff_RLAGL_Vector_cond1_1875	chr11	100146020	100146378	+	5.49252	NA	promoter-TSS (NM_008471)	promoter-TSS (NM_008471)	-273	NM_008471	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding
diff_RLAGL_Vector_cond1_9302	chr7	139398714	139398973	+	5.49213	NA	intron (NM_001127363, intron 1 of 15)	intron (NM_001127363, intron 1 of 15)	9734	NM_183144	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding
diff_RLAGL_Vector_cond1_7653	chr5	38038890	38039300	+	5.49183	NA	promoter-TSS (NM_026959)	promoter-TSS (NM_026959)	-135	NM_026959	71116	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding
diff_RLAGL_Vector_cond1_672	chr1	172461612	172461896	+	5.49121	NA	Intergenic	MER77B|LTR|ERVL	-13606	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding
diff_RLAGL_Vector_cond1_7620	chr5	32785315	32785845	+	5.49020	NA	promoter-TSS (NM_177298)	promoter-TSS (NM_177298)	46	NM_177298	320951	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding
diff_RLAGL_Vector_cond1_7538	chr5	13399005	13399560	+	5.48975	NA	promoter-TSS (NM_009152)	promoter-TSS (NM_009152)	-27	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding
diff_RLAGL_Vector_cond1_971	chr10	32223882	32224186	+	5.48772	NA	intron (NM_001013411, intron 3 of 6)	RLTR10D2|LTR|ERVK	-614309	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
diff_RLAGL_Vector_cond1_3998	chr16	46848053	46848360	+	5.48730	NA	Intergenic	Intergenic	-351239	NM_021497	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
diff_RLAGL_Vector_cond1_7340	chr4	134081940	134082216	+	5.48518	NA	exon (NM_001162970, exon 12 of 20)	exon (NM_001162970, exon 12 of 20)	12995	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding
diff_RLAGL_Vector_cond1_8733	chr6	142162089	142162313	+	5.48508	NA	intron (NM_023718, intron 1 of 14)	RLTR22_Mus|LTR|ERVK	23948	NM_023718	28254	Mm.38953	NM_023718	ENSMUSG00000079262	Slco1a6	4930422F19Rik|AI790453|Oatp-5|Oatp5|Slc21a13	solute carrier organic anion transporter family, member 1a6	protein-coding
diff_RLAGL_Vector_cond1_1699	chr11	62624248	62624540	+	5.48486	NA	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	19864	NR_028541	100217444		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA
diff_RLAGL_Vector_cond1_1917	chr11	108215519	108215733	+	5.48414	NA	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	128262	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding
diff_RLAGL_Vector_cond1_3779	chr15	94404056	94404477	+	5.48378	NA	promoter-TSS (NM_001164786)	promoter-TSS (NM_001164786)	84	NM_001164786	223838	Mm.214132	NM_177431	ENSMUSG00000022449	Adamts20	Adamst20|bt	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	protein-coding
diff_RLAGL_Vector_cond1_2250	chr12	55398746	55398947	+	5.48330	NA	promoter-TSS (NM_011968)	promoter-TSS (NM_011968)	21	NM_011968	26443	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding
diff_RLAGL_Vector_cond1_7714	chr5	50629576	50629818	+	5.48284	NA	Intergenic	Intergenic	376935	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
diff_RLAGL_Vector_cond1_7763	chr5	67401402	67401622	+	5.48235	NA	intron (NM_001164806, intron 3 of 4)	intron (NM_001164806, intron 3 of 4)	26287	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_2013	chr11	120518596	120518903	+	5.48019	NA	Intergenic	Lx8|LINE|L1	-11978	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding
diff_RLAGL_Vector_cond1_10145	chr9	69458370	69458604	+	5.47838	NA	intron (NM_007585, intron 1 of 12)	intron (NM_007585, intron 1 of 12)	1543	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA
diff_RLAGL_Vector_cond1_9823	chr8	120416335	120417251	+	5.47745	NA	Intergenic	Intergenic	-72073	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1	protein-coding
diff_RLAGL_Vector_cond1_9270	chr7	132930976	132931215	+	5.47680	NA	Intergenic	CpG	-18527	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4405	chr17	35725672	35725901	+	5.47677	NA	Intergenic	Intergenic	-21647	NM_172962	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding
diff_RLAGL_Vector_cond1_10423	chrX	43740104	43740458	+	5.47666	NA	Intergenic	Lx6|LINE|L1	149292	NM_001195271	637093	Mm.368463	NM_001195271	ENSMUSG00000078320	Gm362	-	predicted gene 362	protein-coding
diff_RLAGL_Vector_cond1_2898	chr13	101832501	101832704	+	5.47608	NA	Intergenic	Intergenic	-64385	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding
diff_RLAGL_Vector_cond1_174	chr1	50927051	50927474	+	5.47435	NA	promoter-TSS (NM_019790)	promoter-TSS (NM_019790)	-261	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding
diff_RLAGL_Vector_cond1_6160	chr3	9609241	9609507	+	5.47395	NA	exon (NM_133218, exon 1 of 9)	exon (NM_133218, exon 1 of 9)	711	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding
diff_RLAGL_Vector_cond1_1667	chr11	56069699	56069939	+	5.47295	NA	Intergenic	Intergenic	-28832	NM_153079	216749	Mm.213205	NM_153079	ENSMUSG00000037393	Nmur2	Nmu2r	neuromedin U receptor 2	protein-coding
diff_RLAGL_Vector_cond1_4362	chr17	30576334	30576604	+	5.47284	NA	promoter-TSS (NM_027060)	promoter-TSS (NM_027060)	-182	NM_027060	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding
diff_RLAGL_Vector_cond1_9548	chr8	56287433	56287650	+	5.47248	NA	Intergenic	Intergenic	-7011	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding
diff_RLAGL_Vector_cond1_320	chr1	86176082	86176324	+	5.47222	NA	intron (NM_001310702, intron 8 of 24)	MTE2a|LTR|ERVL-MaLR	21423	NM_027456	78795	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding
diff_RLAGL_Vector_cond1_307	chr1	82334520	82334773	+	5.47142	NA	intron (NM_029777, intron 1 of 6)	intron (NM_029777, intron 1 of 6)	-4403	NM_001122685	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3586	chr15	52712078	52713021	+	5.46895	NA	exon (NM_027212, exon 1 of 4)	exon (NM_027212, exon 1 of 4)	104	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
diff_RLAGL_Vector_cond1_8555	chr6	113141563	113141927	+	5.46882	NA	intron (NM_028385, intron 17 of 21)	intron (NM_028385, intron 17 of 21)	53639	NM_177763	269788	Mm.37943	NM_177763	ENSMUSG00000042873	Lhfpl4	1190004M23Rik|AI604880|B230384L07|mKIAA4027	lipoma HMGIC fusion partner-like protein 4	protein-coding
diff_RLAGL_Vector_cond1_6269	chr3	41521791	41521997	+	5.46796	NA	intron (NR_130791, intron 3 of 5)	intron (NR_130791, intron 3 of 5)	6580	NR_130791	78648	Mm.366093	NR_130791		2400006E01Rik	lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA
diff_RLAGL_Vector_cond1_3459	chr15	10485954	10486266	+	5.46768	NA	promoter-TSS (NM_001289447)	promoter-TSS (NM_001289447)	72	NM_001289447	19355	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding
diff_RLAGL_Vector_cond1_2806	chr13	72628945	72629305	+	5.46765	NA	promoter-TSS (NR_030701)	promoter-TSS (NR_030701)	147	NM_010574	16372	Mm.28888	NM_010574	ENSMUSG00000001504	Irx2	IRX6	Iroquois related homeobox 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3546	chr15	41916850	41917304	+	5.46732	NA	Intergenic	Intergenic	-47357	NM_175456	223513	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding
diff_RLAGL_Vector_cond1_8782	chr6	148935909	148936216	+	5.46662	NA	intron (NM_019643, intron 1 of 5)	intron (NM_019643, intron 1 of 5)	10370	NM_019643	56306	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Tera	family with sequence similarity 60, member A	protein-coding
diff_RLAGL_Vector_cond1_4049	chr16	57226539	57226835	+	5.46390	NA	intron (NM_026254, intron 1 of 17)	L2a|LINE|L2	4779	NM_026254	67581	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding
diff_RLAGL_Vector_cond1_10319	chr9	115365084	115365394	+	5.46185	NA	Intergenic	Intergenic	-16580	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA
diff_RLAGL_Vector_cond1_8583	chr6	117841023	117841307	+	5.46139	NA	promoter-TSS (NM_177684)	promoter-TSS (NM_177684)	-77	NM_177684	232337	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding
diff_RLAGL_Vector_cond1_3829	chr15	101996033	101996240	+	5.46136	NA	TTS (NM_031170)	TTS (NM_031170)	8206	NM_031170	16691	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding
diff_RLAGL_Vector_cond1_5840	chr2	138256841	138257137	+	5.46114	NA	intron (NM_001025431, intron 1 of 4)	CpG	405	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4075	chr16	63669271	63669556	+	5.46096	NA	intron (NM_010140, intron 3 of 16)	RLTR13C2|LTR|ERVK	194744	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
diff_RLAGL_Vector_cond1_8218	chr6	23249611	23249838	+	5.46065	NA	Intergenic	CpG	-1460	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding
diff_RLAGL_Vector_cond1_8803	chr7	6283639	6284055	+	5.46032	NA	Intergenic	Intergenic	-2733	NM_001024928	384763	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding
diff_RLAGL_Vector_cond1_8176	chr6	13069569	13069965	+	5.46011	NA	promoter-TSS (NM_027992)	promoter-TSS (NM_027992)	8	NM_027992	71900	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding
diff_RLAGL_Vector_cond1_211	chr1	63113797	63114260	+	5.45984	NA	promoter-TSS (NR_045915)	promoter-TSS (NR_045915)	239	NM_001114609	227195	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584|OTTMUSG00000002594	INO80 complex subunit D	protein-coding
diff_RLAGL_Vector_cond1_2052	chr12	7919789	7920141	+	5.45965	NA	Intergenic	Intergenic	-57712	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding
diff_RLAGL_Vector_cond1_6941	chr4	43040245	43040525	+	5.45959	NA	promoter-TSS (NM_001253354)	promoter-TSS (NM_001253354)	-84	NM_001253353	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding
diff_RLAGL_Vector_cond1_8637	chr6	127680952	127681235	+	5.45935	NA	Intergenic	Intergenic	88066	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding
diff_RLAGL_Vector_cond1_8253	chr6	33248855	33249180	+	5.45842	NA	promoter-TSS (NM_009148)	promoter-TSS (NM_009148)	-133	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding
diff_RLAGL_Vector_cond1_10371	chr9	122351544	122351826	+	5.45842	NA	promoter-TSS (NM_026179)	promoter-TSS (NM_026179)	69	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_4540	chr17	64935664	64936092	+	5.45672	NA	Intergenic	RLTR49|LTR|ERVK	168767	NR_105051	101202683	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA
diff_RLAGL_Vector_cond1_929	chr10	24869897	24870159	+	5.45369	NA	promoter-TSS (NM_027347)	promoter-TSS (NM_027347)	42	NM_027347	70208	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding
diff_RLAGL_Vector_cond1_6953	chr4	46523104	46523646	+	5.45331	NA	intron (NM_029077, intron 3 of 5)	intron (NM_029077, intron 3 of 5)	12766	NM_029077	74735	Mm.240252	NM_029077		Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding
diff_RLAGL_Vector_cond1_5367	chr2	26964049	26964379	+	5.45296	NA	exon (NM_207234, exon 1 of 8)	exon (NM_207234, exon 1 of 8)	172	NM_207234	227656	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Xpmc2h	REX4, RNA exonuclease 4 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_4190	chr16	90412488	90412838	+	5.45219	NA	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	26266	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding
diff_RLAGL_Vector_cond1_8991	chr7	55793975	55794252	+	5.45162	NA	promoter-TSS (NM_146190)	promoter-TSS (NM_146190)	-35	NM_146190	233276	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding
diff_RLAGL_Vector_cond1_7010	chr4	61858133	61858365	+	5.45154	NA	Intergenic	Intergenic	-23069	NM_008649	17844	Mm.445286	NM_008649	ENSMUSG00000058523	Mup5	Mup18	major urinary protein 5	protein-coding
diff_RLAGL_Vector_cond1_634	chr1	164307479	164307868	+	5.45127	NA	promoter-TSS (NM_025505)	promoter-TSS (NM_025505)	1	NM_138314	171567	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding
diff_RLAGL_Vector_cond1_1103	chr10	69305657	69305931	+	5.45063	NA	Intergenic	Intergenic	47118	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding
diff_RLAGL_Vector_cond1_3215	chr14	74915566	74916210	+	5.45024	NA	intron (NM_001252132, intron 1 of 18)	intron (NM_001252132, intron 1 of 18)	31989	NM_001033439	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2297	chr12	71830911	71831405	+	5.44972	NA	promoter-TSS (NM_172464)	promoter-TSS (NM_172464)	90	NM_026102	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding
diff_RLAGL_Vector_cond1_2609	chr13	28989121	28989321	+	5.44965	NA	Intergenic	Intergenic	-25193	NR_045077	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
diff_RLAGL_Vector_cond1_8786	chr6	149409362	149409680	+	5.44879	NA	exon (NM_009753, exon 1 of 9)	exon (NM_009753, exon 1 of 9)	537	NM_001112796	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik	bicaudal D homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3737	chr15	84809559	84809793	+	5.44830	NA	intron (NM_001081166, intron 2 of 12)	intron (NM_001081166, intron 2 of 12)	46453	NM_001081166	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding
diff_RLAGL_Vector_cond1_2415	chr12	104882134	104882342	+	5.44801	NA	Intergenic	MIRc|SINE|MIR	-17162	NR_104439	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding
diff_RLAGL_Vector_cond1_112	chr1	31019313	31019776	+	5.44776	NA	Intergenic	Intergenic	-69789	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding
diff_RLAGL_Vector_cond1_1418	chr10	126330689	126330901	+	5.44747	NA	Intergenic	Intergenic	364576	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
diff_RLAGL_Vector_cond1_4861	chr18	44643933	44644139	+	5.44694	NA	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-17629	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA
diff_RLAGL_Vector_cond1_8344	chr6	56832075	56832289	+	5.44660	NA	5' UTR (NM_012056, exon 1 of 10)	5' UTR (NM_012056, exon 1 of 10)	123	NM_012056	27055	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding
diff_RLAGL_Vector_cond1_902	chr10	17569840	17570044	+	5.44620	NA	Intergenic	Intergenic	-153286	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding
diff_RLAGL_Vector_cond1_3096	chr14	37134974	37135551	+	5.44557	NA	promoter-TSS (NM_078478)	promoter-TSS (NM_078478)	60	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
diff_RLAGL_Vector_cond1_2768	chr13	67359932	67360257	+	5.44478	NA	intron (NM_001038651, intron 1 of 3)	intron (NM_001038651, intron 1 of 3)	478	NM_001038651	629016	Mm.440800	NM_001038651	ENSMUSG00000098905	Zfp953	E130120F12Rik	zinc finger protein 953	protein-coding
diff_RLAGL_Vector_cond1_8986	chr7	52056028	52056316	+	5.44477	NA	Intergenic	(TTA)n|Simple_repeat|Simple_repeat	-40456	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding
diff_RLAGL_Vector_cond1_635	chr1	164389676	164390076	+	5.44431	NA	intron (NM_001293313, intron 12 of 13)	ORR1C2|LTR|ERVL-MaLR	68479	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding
diff_RLAGL_Vector_cond1_1459	chr11	4849470	4849771	+	5.44384	NA	promoter-TSS (NM_010898)	promoter-TSS (NM_010898)	-76	NM_001252251	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromatosis 2	protein-coding
diff_RLAGL_Vector_cond1_2557	chr13	13393340	13393825	+	5.44381	NA	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	42	NM_031999	83924	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding
diff_RLAGL_Vector_cond1_7965	chr5	120588802	120589103	+	5.44365	NA	promoter-TSS (NM_029408)	promoter-TSS (NM_029408)	-71	NM_029408	75732	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding
diff_RLAGL_Vector_cond1_6282	chr3	50523980	50524343	+	5.44301	NA	Intergenic	Intergenic	-80548	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
diff_RLAGL_Vector_cond1_1086	chr10	61715341	61715602	+	5.44267	NA	intron (NM_001039194, intron 1 of 8)	CpG	208	NM_001039194	71361	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding
diff_RLAGL_Vector_cond1_1243	chr10	89872960	89873213	+	5.44265	NA	promoter-TSS (NM_001128086)	promoter-TSS (NM_001128086)	-423	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_8813	chr7	7297922	7298262	+	5.44231	NA	promoter-TSS (NR_049193)	promoter-TSS (NR_049193)	744	NM_001302387	12727	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2	chloride channel, voltage-sensitive 4	protein-coding
diff_RLAGL_Vector_cond1_4774	chr18	20713414	20713691	+	5.44224	NA	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32852	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding
diff_RLAGL_Vector_cond1_7636	chr5	35673092	35673307	+	5.44191	NA	intron (NM_030127, intron 1 of 8)	intron (NM_030127, intron 1 of 8)	6581	NM_030127	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding
diff_RLAGL_Vector_cond1_9514	chr8	46458563	46458890	+	5.44084	NA	Intergenic	Intergenic	-12311	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding
diff_RLAGL_Vector_cond1_3470	chr15	12230445	12230852	+	5.43664	NA	intron (NM_172958, intron 2 of 15)	intron (NM_172958, intron 2 of 15)	25554	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding
diff_RLAGL_Vector_cond1_7796	chr5	74793438	74793905	+	5.43648	NA	Intergenic	Intergenic	-90768	NM_001159577	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding
diff_RLAGL_Vector_cond1_7930	chr5	113310635	113310862	+	5.43436	NA	promoter-TSS (NM_001162965)	promoter-TSS (NM_001162965)	38	NM_001254731	52850	Mm.200203	NM_172718	ENSMUSG00000042216	Sgsm1	2410098H20Rik|AA408781|D5Bwg1524e|E130107M15|NuIP|Rutbc2	small G protein signaling modulator 1	protein-coding
diff_RLAGL_Vector_cond1_5154	chr19	38645308	38645522	+	5.43339	NA	intron (NM_019588, intron 2 of 31)	MLTR18D_MM|LTR|ERVK	121218	NM_019588	74055	Mm.34031	NM_019588	ENSMUSG00000024998	Plce1	4933403A21Rik|PLCepsilon|Plce|mKIAA1516	phospholipase C, epsilon 1	protein-coding
diff_RLAGL_Vector_cond1_2268	chr12	59066673	59067025	+	5.43243	NA	promoter-TSS (NM_008891)	promoter-TSS (NM_008891)	-70	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding
diff_RLAGL_Vector_cond1_3623	chr15	60824159	60824584	+	5.43238	NA	non-coding (NR_030696, exon 1 of 3)	non-coding (NR_030696, exon 1 of 3)	709	NM_001162926	399603	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding
diff_RLAGL_Vector_cond1_10068	chr9	48740026	48740352	+	5.43202	NA	intron (NM_001033324, intron 3 of 6)	intron (NM_001033324, intron 3 of 6)	95756	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding
diff_RLAGL_Vector_cond1_8884	chr7	28267950	28268523	+	5.43004	NA	exon (NM_198425, exon 1 of 1)	exon (NM_198425, exon 1 of 1)	355	NM_198425	386655	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding
diff_RLAGL_Vector_cond1_10498	chrX	96734062	96734483	+	5.42988	NA	Intergenic	Intergenic	20804	NM_029536	76206	Mm.256065	NM_029536	ENSMUSG00000031210	Gpr165	6530406P05Rik	G protein-coupled receptor 165	protein-coding
diff_RLAGL_Vector_cond1_744	chr1	181842209	181842538	+	5.42897	NA	promoter-TSS (NM_133815)	promoter-TSS (NM_133815)	28	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding
diff_RLAGL_Vector_cond1_7546	chr5	16045503	16045743	+	5.42889	NA	intron (NM_009784, intron 3 of 37)	intron (NM_009784, intron 3 of 37)	110932	NM_009784	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
diff_RLAGL_Vector_cond1_7833	chr5	90891171	90891472	+	5.42760	NA	promoter-TSS (NM_008176)	promoter-TSS (NM_008176)	76	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding
diff_RLAGL_Vector_cond1_10055	chr9	44721316	44721581	+	5.42691	NA	intron (NM_153537, intron 4 of 21)	intron (NM_153537, intron 4 of 21)	13750	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology-like domain, family B, member 1	protein-coding
diff_RLAGL_Vector_cond1_7394	chr4	141286915	141287402	+	5.42594	NA	Intergenic	Intergenic	-14063	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding
diff_RLAGL_Vector_cond1_1558	chr11	24804555	24804998	+	5.42555	NA	Intergenic	Intergenic	-74054	NR_033491	100038617	Mm.387376	NR_033491	ENSMUSG00000073103	Gm10466	ENSMUSG00000073103	predicted gene 10466	ncRNA
diff_RLAGL_Vector_cond1_7269	chr4	123282511	123282746	+	5.42494	NA	promoter-TSS (NM_130881)	promoter-TSS (NM_130881)	-283	NM_130881	230721	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding
diff_RLAGL_Vector_cond1_1540	chr11	21371120	21371465	+	5.42477	NA	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-25	NM_001290634	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding
diff_RLAGL_Vector_cond1_4713	chr18	4352830	4353166	+	5.42442	NA	promoter-TSS (NM_007746)	promoter-TSS (NM_007746)	-45	NM_007746	26410	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding
diff_RLAGL_Vector_cond1_4806	chr18	33491804	33492014	+	5.42383	NA	Intergenic	L1MA4|LINE|L1	27746	NR_045415	433171	Mm.353332	NR_045415		Gm10549	ENSMUSG00000073610	predicted gene 10549	ncRNA
diff_RLAGL_Vector_cond1_5864	chr2	142529888	142530208	+	5.42335	NA	Intergenic	Intergenic	371416	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
diff_RLAGL_Vector_cond1_2891	chr13	98594850	98595131	+	5.42320	NA	Intergenic	Intergenic	42420	NM_026685	68344	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding
diff_RLAGL_Vector_cond1_8084	chr5	143732433	143732653	+	5.42087	NA	promoter-TSS (NM_029749)	promoter-TSS (NM_029749)	-263	NM_029749	76800	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding
diff_RLAGL_Vector_cond1_7809	chr5	81610288	81610520	+	5.42078	NA	intron (NM_198702, intron 10 of 27)	intron (NM_198702, intron 10 of 27)	588811	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
diff_RLAGL_Vector_cond1_2748	chr13	63567973	63568187	+	5.42058	NA	Intergenic	CpG	-2560	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched homolog 1	protein-coding
diff_RLAGL_Vector_cond1_6517	chr3	106001424	106001657	+	5.42034	NA	promoter-TSS (NM_029604)	promoter-TSS (NM_029604)	-43	NM_029604	100503311	Mm.386825	NM_029604	ENSMUSG00000010136	Pifo	1700027A23Rik	primary cilia formation	protein-coding
diff_RLAGL_Vector_cond1_7749	chr5	64423066	64423377	+	5.42016	NA	Intergenic	Intergenic	44721	NR_040681	69999	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA
diff_RLAGL_Vector_cond1_481	chr1	131527373	131527814	+	5.42008	NA	promoter-TSS (NM_175382)	promoter-TSS (NM_175382)	-232	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding
diff_RLAGL_Vector_cond1_1930	chr11	110379952	110380230	+	5.41987	NA	Intergenic	Intergenic	-19031	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
diff_RLAGL_Vector_cond1_6333	chr3	59893270	59893570	+	5.41961	NA	Intergenic	RMER15|LTR|ERVL	-31794	NM_177661	229333	Mm.75765	NM_177661	ENSMUSG00000036951	C130079G13Rik	-	RIKEN cDNA C130079G13 gene	protein-coding
diff_RLAGL_Vector_cond1_6790	chr4	4057493	4057890	+	5.41950	NA	intron (NM_001080710, intron 6 of 6)	intron (NM_001080710, intron 6 of 6)	19823	NM_001080710	242286	Mm.298546	NM_001080710		Sdr16c6	4833413O15Rik|Gm423	short chain dehydrogenase/reductase family 16C, member 6	protein-coding
diff_RLAGL_Vector_cond1_7182	chr4	106049777	106050191	+	5.41896	NA	Intergenic	Intergenic	-266229	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding
diff_RLAGL_Vector_cond1_6904	chr4	29420298	29420692	+	5.41819	NA	Intergenic	Intergenic	607350	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
diff_RLAGL_Vector_cond1_7268	chr4	123155456	123155707	+	5.41749	NA	Intergenic	Intergenic	-15640	NM_019489	56031	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding
diff_RLAGL_Vector_cond1_9269	chr7	132756455	132756691	+	5.41731	NA	intron (NM_175268, intron 4 of 4)	intron (NM_175268, intron 4 of 4)	30362	NM_175268	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding
diff_RLAGL_Vector_cond1_2667	chr13	48625588	48625825	+	5.41709	NA	promoter-TSS (NM_001301781)	promoter-TSS (NM_001301781)	-34	NM_207232	218232	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_6250	chr3	36533365	36533659	+	5.41598	NA	Intergenic	Intergenic	-12067	NR_040411	100503068	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	OTTMUSG00000002111	predicted gene 11549	ncRNA
diff_RLAGL_Vector_cond1_3177	chr14	63606777	63606980	+	5.41568	NA	exon (NM_173393, exon 1 of 3)	exon (NM_173393, exon 1 of 3)	348	NM_173393	219149	Mm.450437	NM_173393	ENSMUSG00000035067	Xkr6	BC024502|Xrg6	X Kell blood group precursor related family member 6 homolog	protein-coding
diff_RLAGL_Vector_cond1_2643	chr13	37909087	37909528	+	5.41537	NA	intron (NR_033615, intron 6 of 9)	intron (NR_033615, intron 6 of 9)	20436	NM_001177869	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_4621	chr17	78835311	78835699	+	5.41528	NA	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	-11	NM_181649	53951	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding
diff_RLAGL_Vector_cond1_5697	chr2	110305583	110305927	+	5.41505	NA	promoter-TSS (NM_130452)	promoter-TSS (NM_130452)	-30	NM_130452	170442	Mm.27335	NM_130452		Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding
diff_RLAGL_Vector_cond1_8711	chr6	139150853	139151057	+	5.41503	NA	Intergenic	Intergenic	171621	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA
diff_RLAGL_Vector_cond1_9807	chr8	117771268	117771530	+	5.41491	NA	Intergenic	Lx8|LINE|L1	30530	NM_026758	68533	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding
diff_RLAGL_Vector_cond1_8688	chr6	135385842	135386066	+	5.41463	NA	Intergenic	Intergenic	18461	NM_001288627	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding
diff_RLAGL_Vector_cond1_3802	chr15	98609840	98610041	+	5.41460	NA	Intergenic	CpG	-2307	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding
diff_RLAGL_Vector_cond1_4940	chr18	69344124	69344606	+	5.41459	NA	promoter-TSS (NM_013685)	promoter-TSS (NM_013685)	-127	NM_013685	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
diff_RLAGL_Vector_cond1_2439	chr12	109022534	109022778	+	5.41360	NA	intron (NM_177602, intron 4 of 6)	intron (NM_177602, intron 4 of 6)	45561	NM_001163175	380785	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding
diff_RLAGL_Vector_cond1_5876	chr2	143853624	143853864	+	5.41301	NA	intron (NM_001291061, intron 2 of 7)	intron (NM_001291061, intron 2 of 7)	9429	NM_001291061	12075	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding
diff_RLAGL_Vector_cond1_2919	chr13	108599283	108599504	+	5.41300	NA	Intergenic	MIRb|SINE|MIR	-54784	NM_011056	238871	Mm.434429	NM_011056		Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding
diff_RLAGL_Vector_cond1_1214	chr10	86310614	86310956	+	5.41223	NA	intron (NM_011595, intron 1 of 4)	intron (NM_011595, intron 1 of 4)	10373	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding
diff_RLAGL_Vector_cond1_1793	chr11	84256008	84256273	+	5.41042	NA	intron (NM_133360, intron 14 of 53)	MLTR11A|LTR|ERVK	60702	NM_133360	107476	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding
diff_RLAGL_Vector_cond1_6338	chr3	60858592	60858966	+	5.41023	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-144006	NM_001282016	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding
diff_RLAGL_Vector_cond1_8883	chr7	28070960	28071337	+	5.41005	NA	promoter-TSS (NM_001122603)	promoter-TSS (NM_001122603)	-88	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding
diff_RLAGL_Vector_cond1_1893	chr11	102408527	102408727	+	5.40968	NA	Intergenic	Intergenic	-1110	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding
diff_RLAGL_Vector_cond1_5240	chr2	3284447	3284742	+	5.40950	NA	intron (NM_008708, intron 1 of 13)	CpG	382	NM_001290369	18108	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_1143	chr10	78287763	78288075	+	5.40920	NA	exon (NM_053014, exon 3 of 10)	exon (NM_053014, exon 3 of 10)	-43277	NM_001081055	216131	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1	trafficking protein particle complex 10	protein-coding
diff_RLAGL_Vector_cond1_5278	chr2	11778091	11778824	+	5.40877	NA	promoter-TSS (NM_015792)	promoter-TSS (NM_015792)	704	NM_177268	320816	Mm.260201	NM_177268		Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding
diff_RLAGL_Vector_cond1_313	chr1	83111031	83111338	+	5.40764	NA	Intergenic	Intergenic	-5582	NM_001159738	20297	Mm.116739	NM_016960	ENSMUSG00000026166	Ccl20	CKb4|LARC|MIP-3A|MIP-3[a]|MIP3A|ST38|Scya20|exodus-1	chemokine (C-C motif) ligand 20	protein-coding
diff_RLAGL_Vector_cond1_4024	chr16	52129415	52129876	+	5.40644	NA	intron (NM_001033238, intron 4 of 17)	intron (NM_001033238, intron 4 of 17)	98096	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
diff_RLAGL_Vector_cond1_10059	chr9	46121533	46121804	+	5.40626	NA	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	-106962	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding
diff_RLAGL_Vector_cond1_10073	chr9	50536117	50536316	+	5.40610	NA	intron (NM_133217, intron 9 of 11)	intron (NM_133217, intron 9 of 11)	-7575	NM_011220	19286	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding
diff_RLAGL_Vector_cond1_5601	chr2	84938475	84938717	+	5.40605	NA	intron (NM_021398, intron 3 of 12)	intron (NM_021398, intron 3 of 12)	1950	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding
diff_RLAGL_Vector_cond1_128	chr1	35702552	35702861	+	5.40567	NA	Intergenic	MTC|LTR|ERVL-MaLR	-365694	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_5718	chr2	114580744	114581180	+	5.40558	NA	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	73966	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
diff_RLAGL_Vector_cond1_8980	chr7	49318414	49318777	+	5.40487	NA	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	72406	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
diff_RLAGL_Vector_cond1_2629	chr13	33141485	33141760	+	5.40361	NA	Intergenic	MMVL30-int|LTR|ERV1	16729	NM_011453	20707	Mm.219429	NM_011453	ENSMUSG00000021404	Serpinb9c	3830421J05Rik|Nk9|Spi11	serine (or cysteine) peptidase inhibitor, clade B, member 9c	protein-coding
diff_RLAGL_Vector_cond1_8598	chr6	120995656	120995898	+	5.40287	NA	intron (NM_001270475, intron 19 of 31)	intron (NM_001270475, intron 19 of 31)	-78957	NM_007544	12122	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding
diff_RLAGL_Vector_cond1_7159	chr4	101122043	101122244	+	5.40273	NA	intron (NM_183024, intron 5 of 11)	ORR1A4|LTR|ERVL-MaLR	53105	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding
diff_RLAGL_Vector_cond1_6473	chr3	96600923	96601329	+	5.40255	NA	promoter-TSS (NM_001163170)	promoter-TSS (NM_001163170)	-7	NM_001163170	280411	Mm.482147	NM_001163170		Lix1l	D130027M04Rik	Lix1-like	protein-coding
diff_RLAGL_Vector_cond1_7735	chr5	53444039	53444334	+	5.40150	NA	Intergenic	Intergenic	-111593	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
diff_RLAGL_Vector_cond1_9290	chr7	137564644	137564884	+	5.40056	NA	Intergenic	Intergenic	127090	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo
diff_RLAGL_Vector_cond1_1547	chr11	23067559	23067895	+	5.40039	NA	Intergenic	CpG	54340	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding
diff_RLAGL_Vector_cond1_10161	chr9	75955106	75955336	+	5.39882	NA	Intergenic	Lx8|LINE|L1	-59756	NM_173731	208982	Mm.82306	NM_173731	ENSMUSG00000007908	Hmgcll1	BC037381	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	protein-coding
diff_RLAGL_Vector_cond1_6735	chr3	152477793	152478008	+	5.39874	NA	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	81216	NM_001287139	108946	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_704	chr1	176353991	176354276	+	5.39732	NA	Intergenic	Intergenic	-78821	NM_176916	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding
diff_RLAGL_Vector_cond1_574	chr1	152624633	152624833	+	5.39721	NA	intron (NM_016846, intron 1 of 17)	intron (NM_016846, intron 1 of 17)	378	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding
diff_RLAGL_Vector_cond1_10201	chr9	88241658	88241879	+	5.39708	NA	Intergenic	Intergenic	-85841	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding
diff_RLAGL_Vector_cond1_7089	chr4	83417281	83417822	+	5.39666	NA	promoter-TSS (NM_029949)	promoter-TSS (NM_029949)	-193	NM_029949	77634	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding
diff_RLAGL_Vector_cond1_7356	chr4	135987114	135987391	+	5.39662	NA	promoter-TSS (NM_025411)	promoter-TSS (NM_025411)	-8	NM_025411	66193	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1878	chr11	100396979	100397358	+	5.39623	NA	promoter-TSS (NR_132425)	promoter-TSS (NR_132425)	622	NM_010593	16480	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding
diff_RLAGL_Vector_cond1_2895	chr13	99516620	99516857	+	5.39577	NA	promoter-TSS (NM_008634)	promoter-TSS (NM_008634)	-136	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding
diff_RLAGL_Vector_cond1_2022	chr11	121229277	121229541	+	5.39474	NA	promoter-TSS (NM_001254735)	promoter-TSS (NM_001254735)	-100	NM_001252550	217370	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding
diff_RLAGL_Vector_cond1_8969	chr7	48132293	48132531	+	5.39469	NA	Intergenic	IAPEY4_LTR|LTR|ERVK	36573	NM_207538	404239	Mm.377927	NM_207538	ENSMUSG00000070551	Mrgprb5	Mgrg11|MrgB5	MAS-related GPR, member B5	protein-coding
diff_RLAGL_Vector_cond1_10168	chr9	78022409	78022611	+	5.39428	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-29448	NM_008103	14531	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8908	chr7	34655147	34655804	+	5.39416	NA	Intergenic	CpG	-2634	NM_146188	233107	Mm.486198	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding
diff_RLAGL_Vector_cond1_2577	chr13	19395713	19396210	+	5.39374	NA	promoter-TSS (NM_024270)	promoter-TSS (NM_024270)	-148	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding
diff_RLAGL_Vector_cond1_665	chr1	170174852	170175283	+	5.39325	NA	promoter-TSS (NM_133806)	promoter-TSS (NM_133806)	-103	NM_001305046	107652	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding
diff_RLAGL_Vector_cond1_1302	chr10	105760186	105760428	+	5.39296	NA	Intergenic	Intergenic	81073	NM_207522	216292	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding
diff_RLAGL_Vector_cond1_4258	chr17	12779437	12779690	+	5.39264	NA	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-9857	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding
diff_RLAGL_Vector_cond1_9770	chr8	109565593	109565822	+	5.39237	NA	promoter-TSS (NM_178380)	promoter-TSS (NM_178380)	-106	NM_178380	64340	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|Prp16|mKIAA0224	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding
diff_RLAGL_Vector_cond1_1328	chr10	110920400	110920617	+	5.39196	NA	intron (NM_007792, intron 1 of 5)	intron (NM_007792, intron 1 of 5)	332	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding
diff_RLAGL_Vector_cond1_7916	chr5	110780393	110780821	+	5.39194	NA	promoter-TSS (NM_019700)	promoter-TSS (NM_019700)	8	NM_001025562	56361	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding
diff_RLAGL_Vector_cond1_6718	chr3	149305099	149305403	+	5.39138	NA	Intergenic	Intergenic	30514	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
diff_RLAGL_Vector_cond1_6072	chr2	172728226	172728662	+	5.39069	NA	Intergenic	CpG	177453	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding
diff_RLAGL_Vector_cond1_7668	chr5	41844216	41844602	+	5.39066	NA	promoter-TSS (NM_001081422)	promoter-TSS (NM_001081422)	-94	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding
diff_RLAGL_Vector_cond1_9243	chr7	128150978	128151236	+	5.39000	NA	TTS (NM_021334)	TTS (NM_021334)	21539	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding
diff_RLAGL_Vector_cond1_10369	chr9	122293870	122294139	+	5.38979	NA	intron (NM_133979, intron 1 of 12)	CpG	419	NM_133979	102566	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding
diff_RLAGL_Vector_cond1_8514	chr6	100287707	100288079	+	5.38882	NA	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	-535	NM_019743	56353	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
diff_RLAGL_Vector_cond1_1256	chr10	93310881	93311080	+	5.38848	NA	5' UTR (NM_001282967, exon 1 of 4)	5' UTR (NM_001282967, exon 1 of 4)	179	NM_001282967	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_7266	chr4	123104752	123104994	+	5.38740	NA	promoter-TSS (NM_007559)	promoter-TSS (NM_007559)	-288	NM_007559	12164	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding
diff_RLAGL_Vector_cond1_7696	chr5	46902003	46902253	+	5.38701	NA	Intergenic	B3A|SINE|B2	-969719	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA
diff_RLAGL_Vector_cond1_1012	chr10	40302212	40302437	+	5.38683	NA	promoter-TSS (NM_007444)	promoter-TSS (NM_007444)	-136	NM_009665	11702	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding
diff_RLAGL_Vector_cond1_10196	chr9	85410750	85410962	+	5.38601	NA	Intergenic	Intergenic	-83706	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	D930050G01Rik	family with sequence similarity 46, member A	protein-coding
diff_RLAGL_Vector_cond1_9246	chr7	128535741	128535952	+	5.38591	NA	intron (NM_013863, intron 1 of 3)	intron (NM_013863, intron 1 of 3)	12263	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding
diff_RLAGL_Vector_cond1_1948	chr11	113750787	113751096	+	5.38583	NA	5' UTR (NM_020006, exon 1 of 2)	5' UTR (NM_020006, exon 1 of 2)	219	NM_020006	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding
diff_RLAGL_Vector_cond1_1373	chr10	118981548	118981781	+	5.38526	NA	Intergenic	Intergenic	-54521	NR_110482	216377	Mm.208936	NR_110482		Gm38403	C230029M16	predicted gene, 38403	ncRNA
diff_RLAGL_Vector_cond1_7487	chr4	154877876	154878148	+	5.38521	NA	intron (NM_013783, intron 2 of 23)	ORR1E|LTR|ERVL-MaLR	8427	NM_013783	27390	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding
diff_RLAGL_Vector_cond1_9607	chr8	70539511	70539749	+	5.38504	NA	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-45	NM_007924	13716	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding
diff_RLAGL_Vector_cond1_850	chr10	5805630	5806193	+	5.38379	NA	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-446	NM_025995	67141	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding
diff_RLAGL_Vector_cond1_2505	chr12	119390514	119390722	+	5.38267	NA	Intergenic	Intergenic	-52792	NM_001163136	238455	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding
diff_RLAGL_Vector_cond1_8714	chr6	139368594	139368843	+	5.38216	NA	Intergenic	Intergenic	-46142	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA
diff_RLAGL_Vector_cond1_2095	chr12	15162547	15162911	+	5.38141	NA	Intergenic	L1_Mus2|LINE|L1	-112340	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
diff_RLAGL_Vector_cond1_3923	chr16	29788280	29788560	+	5.38038	NA	Intergenic	Intergenic	190704	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA
diff_RLAGL_Vector_cond1_2028	chr11	121712973	121713487	+	5.37971	NA	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	10803	NM_144797	210029	Mm.153566	NM_144797		Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding
diff_RLAGL_Vector_cond1_733	chr1	180365248	180365458	+	5.37923	NA	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-34804	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
diff_RLAGL_Vector_cond1_1123	chr10	72654680	72654916	+	5.37886	NA	promoter-TSS (NM_025635)	promoter-TSS (NM_025635)	-48	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding
diff_RLAGL_Vector_cond1_4330	chr17	24896321	24896606	+	5.37862	NA	promoter-TSS (NM_019730)	promoter-TSS (NM_019730)	-37	NM_019730	79059	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding
diff_RLAGL_Vector_cond1_7307	chr4	129542620	129543007	+	5.37746	NA	promoter-TSS (NM_008228)	promoter-TSS (NM_008228)	-167	NM_008228	433759	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding
diff_RLAGL_Vector_cond1_3428	chr15	6386563	6386913	+	5.37737	NA	promoter-TSS (NM_023118)	promoter-TSS (NM_023118)	-10	NM_001037905	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
diff_RLAGL_Vector_cond1_310	chr1	82761863	82762075	+	5.37649	NA	intron (NM_025453, intron 2 of 3)	intron (NM_025453, intron 2 of 3)	6487	NM_025453	66261	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding
diff_RLAGL_Vector_cond1_8729	chr6	141590659	141591156	+	5.37646	NA	Intergenic	RLTR13D2|LTR|ERVK	-38611	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding
diff_RLAGL_Vector_cond1_6899	chr4	29133623	29134158	+	5.37588	NA	Intergenic	Intergenic	320745	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
diff_RLAGL_Vector_cond1_9374	chr8	10962042	10962282	+	5.37505	NA	Intergenic	L3|LINE|CR1	-33705	NR_030715	665306	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA
diff_RLAGL_Vector_cond1_3558	chr15	44457407	44457865	+	5.37372	NA	promoter-TSS (NM_138674)	promoter-TSS (NM_138674)	83	NM_138674	192190	Mm.211494	NM_138674	ENSMUSG00000038725	Pkhd1l1	AB055648|PKHDL1	polycystic kidney and hepatic disease 1-like 1	protein-coding
diff_RLAGL_Vector_cond1_6689	chr3	146328020	146328241	+	5.37346	NA	Intergenic	Intergenic	50814	NR_033542	100038607	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	ENSMUSG00000074175	predicted gene 10636	ncRNA
diff_RLAGL_Vector_cond1_9975	chr9	26733722	26734080	+	5.37329	NA	promoter-TSS (NM_001310766)	promoter-TSS (NM_001310766)	93	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding
diff_RLAGL_Vector_cond1_6585	chr3	126860481	126860795	+	5.37145	NA	Intergenic	RLTR22_Mur|LTR|ERVK	82748	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	AI835472|AW491075|Ank-2	ankyrin 2, brain	protein-coding
diff_RLAGL_Vector_cond1_827	chr1	194610390	194610826	+	5.37057	NA	Intergenic	Intergenic	-9221	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding
diff_RLAGL_Vector_cond1_788	chr1	189830946	189831298	+	5.36899	NA	intron (NM_008976, intron 5 of 18)	intron (NM_008976, intron 5 of 18)	91166	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_1788	chr11	83271650	83271895	+	5.36889	NA	Intergenic	Intergenic	14954	NM_001166028	237890	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding
diff_RLAGL_Vector_cond1_9623	chr8	72832218	72832856	+	5.36884	NA	intron (NM_010687, intron 12 of 14)	intron (NM_010687, intron 12 of 14)	70657	NM_007975	14065	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding
diff_RLAGL_Vector_cond1_5490	chr2	59160551	59160955	+	5.36880	NA	promoter-TSS (NM_175464)	promoter-TSS (NM_175464)	-97	NM_026361	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding
diff_RLAGL_Vector_cond1_6297	chr3	53253000	53253242	+	5.36814	NA	intron (NM_175386, intron 3 of 3)	intron (NM_175386, intron 3 of 3)	210137	NM_172501	212114	Mm.85744	NM_172501		Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding
diff_RLAGL_Vector_cond1_6002	chr2	162660993	162661338	+	5.36813	NA	promoter-TSS (NM_021464)	promoter-TSS (NM_021464)	2	NR_033569	77288	Mm.376571	NR_033569		9430021M05Rik	-	RIKEN cDNA 9430021M05 gene	ncRNA
diff_RLAGL_Vector_cond1_4681	chr17	90017579	90017984	+	5.36714	NA	Intergenic	RLTR22_Mur|LTR|ERVK	638540	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA
diff_RLAGL_Vector_cond1_9771	chr8	109905396	109905632	+	5.36579	NA	intron (NM_001122594, intron 4 of 18)	intron (NM_001122594, intron 4 of 18)	36911	NM_001122594	244650	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding
diff_RLAGL_Vector_cond1_1462	chr11	5244127	5244428	+	5.36562	NA	intron (NM_032396, intron 1 of 8)	intron (NM_032396, intron 1 of 8)	-10321	NR_037240	100526548		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA
diff_RLAGL_Vector_cond1_8461	chr6	89595342	89595704	+	5.36380	NA	exon (NM_001167736, exon 1 of 7)	exon (NM_001167736, exon 1 of 7)	129	NM_025351	66098	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_6734	chr3	152395776	152396153	+	5.36379	NA	promoter-TSS (NM_001080755)	promoter-TSS (NM_001080755)	-39	NM_001080755	108946	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_3615	chr15	58599030	58599247	+	5.36362	NA	Intergenic	Intergenic	183670	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	D15Ertd621e	AV220772|BC033609|Fam91a1|SKIN|mKIAA0493	DNA segment, Chr 15, ERATO Doi 621, expressed	protein-coding
diff_RLAGL_Vector_cond1_6013	chr2	164442900	164443101	+	5.36275	NA	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	188	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding
diff_RLAGL_Vector_cond1_8943	chr7	43443904	43444222	+	5.36240	NA	promoter-TSS (NR_075104)	promoter-TSS (NR_075104)	-9	NR_075104	110826	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_6256	chr3	37419326	37419900	+	5.36235	NA	promoter-TSS (NM_001163511)	promoter-TSS (NM_001163511)	-17	NM_153561	229228	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding
diff_RLAGL_Vector_cond1_4428	chr17	44100713	44100981	+	5.36199	NA	intron (NM_199016, intron 3 of 3)	intron (NM_199016, intron 3 of 3)	4961	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding
diff_RLAGL_Vector_cond1_5705	chr2	112378996	112379288	+	5.36198	NA	promoter-TSS (NM_024254)	promoter-TSS (NM_024254)	-69	NM_024254	72425	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding
diff_RLAGL_Vector_cond1_6194	chr3	19965381	19965584	+	5.36184	NA	intron (NM_007752, intron 2 of 18)	intron (NM_007752, intron 2 of 18)	8428	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding
diff_RLAGL_Vector_cond1_9363	chr8	8568378	8568741	+	5.36151	NA	Intergenic	Intergenic	92214	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
diff_RLAGL_Vector_cond1_6378	chr3	68895573	68895863	+	5.36115	NA	intron (NM_026641, intron 19 of 19)	intron (NM_026641, intron 19 of 19)	26132	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding
diff_RLAGL_Vector_cond1_8298	chr6	43851241	43851630	+	5.36074	NA	Intergenic	RMER17A2|LTR|ERVK	-185157	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
diff_RLAGL_Vector_cond1_10492	chrX	95444548	95445393	+	5.36023	NA	promoter-TSS (NM_175179)	promoter-TSS (NM_175179)	-130	NM_175179	72345	Mm.182867	NM_175179	ENSMUSG00000050332	Amer1	2810002O09Rik|AW492303|Fam123b|Wtx	APC membrane recruitment 1	protein-coding
diff_RLAGL_Vector_cond1_1797	chr11	85353054	85353320	+	5.35878	NA	promoter-TSS (NM_138681)	promoter-TSS (NM_138681)	23	NM_001166643	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding
diff_RLAGL_Vector_cond1_6728	chr3	152054339	152054552	+	5.35833	NA	Intergenic	Intergenic	111455	NM_016867	54120	Mm.97	NM_016867		Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding
diff_RLAGL_Vector_cond1_466	chr1	128102732	128103185	+	5.35750	NA	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	89	NM_001285945	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4408	chr17	36942727	36942999	+	5.35567	NA	promoter-TSS (NM_001099632)	promoter-TSS (NM_001099632)	-188	NM_001099632	386454	Mm.105324	NM_001099632	ENSMUSG00000036492	Rnf39	BC038661|Gm1786|Gm1787|Gm320|LIRF	ring finger protein 39	protein-coding
diff_RLAGL_Vector_cond1_2170	chr12	35016878	35017194	+	5.35465	NA	Intergenic	Intergenic	-30153	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding
diff_RLAGL_Vector_cond1_9081	chr7	78568998	78569212	+	5.35447	NA	intron (NM_182809, intron 1 of 13)	intron (NM_182809, intron 1 of 13)	8733	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
diff_RLAGL_Vector_cond1_9834	chr8	121897832	121898235	+	5.35420	NA	intron (NM_011404, intron 1 of 9)	intron (NM_011404, intron 1 of 9)	9653	NM_011404	20539	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding
diff_RLAGL_Vector_cond1_5467	chr2	52963566	52963803	+	5.35403	NA	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	105816	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding
diff_RLAGL_Vector_cond1_6666	chr3	143478154	143478504	+	5.35377	NA	Intergenic	Intergenic	233814	NR_040405	621809	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA
diff_RLAGL_Vector_cond1_7443	chr4	148686355	148686618	+	5.35307	NA	Intergenic	Intergenic	43169	NM_001085505	230909	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding
diff_RLAGL_Vector_cond1_4660	chr17	87025350	87025872	+	5.35302	NA	promoter-TSS (NM_019936)	promoter-TSS (NM_019936)	50	NM_019936	56724	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding
diff_RLAGL_Vector_cond1_10525	chrX	112437618	112437854	+	5.35259	NA	Intergenic	Intergenic	-30957	NM_028655	73809	Mm.50508	NM_028655	ENSMUSG00000025527	Satl1	4930404K22Rik	spermidine/spermine N1-acetyl transferase-like 1	protein-coding
diff_RLAGL_Vector_cond1_10110	chr9	60747586	60747862	+	5.35187	NA	Intergenic	Intergenic	34603	NM_026235	67557	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding
diff_RLAGL_Vector_cond1_871	chr10	9296138	9296342	+	5.35014	NA	Intergenic	Intergenic	378968	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_8320	chr6	51720606	51721116	+	5.34847	NA	Intergenic	Intergenic	176338	NM_028035	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding
diff_RLAGL_Vector_cond1_2425	chr12	107695710	107696225	+	5.34830	NA	Intergenic	Intergenic	39521	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA
diff_RLAGL_Vector_cond1_319	chr1	85981852	85982155	+	5.34829	NA	Intergenic	Intergenic	-20948	NM_001033290	227326	Mm.244158	NM_001033290		Gpr55	Gm218|Lpir1	G protein-coupled receptor 55	protein-coding
diff_RLAGL_Vector_cond1_4539	chr17	64617863	64618248	+	5.34823	NA	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	16406	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_10322	chr9	116187359	116187883	+	5.34771	NA	Intergenic	Intergenic	-12258	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding
diff_RLAGL_Vector_cond1_4980	chr18	77732624	77732871	+	5.34579	NA	Intergenic	Intergenic	18563	NR_027978	67640	Mm.482903	NM_026289		4930465K10Rik	-	RIKEN cDNA 4930465K10 gene	ncRNA
diff_RLAGL_Vector_cond1_4565	chr17	69383223	69383439	+	5.34548	NA	promoter-TSS (NM_009547)	promoter-TSS (NM_009547)	-647	NM_009547	22666	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding
diff_RLAGL_Vector_cond1_7983	chr5	129008327	129008598	+	5.34545	NA	5' UTR (NM_001286033, exon 1 of 10)	5' UTR (NM_001286033, exon 1 of 10)	110	NM_001286033	13852	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding
diff_RLAGL_Vector_cond1_3971	chr16	42276511	42276782	+	5.34533	NA	intron (NM_008083, intron 2 of 2)	intron (NM_008083, intron 2 of 2)	26823	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA
diff_RLAGL_Vector_cond1_2688	chr13	55022674	55022880	+	5.34447	NA	Intergenic	Intergenic	-1392	NM_001033245	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding
diff_RLAGL_Vector_cond1_3028	chr14	19170230	19170625	+	5.34432	NA	Intergenic	Intergenic	-276800	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding
diff_RLAGL_Vector_cond1_2276	chr12	65037680	65037905	+	5.34272	NA	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	1458	NM_177806	328110	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	PRP39 pre-mRNA processing factor 39 homolog (yeast)	protein-coding
diff_RLAGL_Vector_cond1_2027	chr11	121679666	121679947	+	5.34256	NA	Intergenic	MTD|LTR|ERVL-MaLR	-6655	NM_178664	210004	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding
diff_RLAGL_Vector_cond1_5740	chr2	119329138	119329426	+	5.34097	NA	intron (NM_019454, intron 6 of 10)	intron (NM_019454, intron 6 of 10)	-3085	NR_030683	100043609	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4|OTTMUSG00000015946	predicted gene 14207	ncRNA
diff_RLAGL_Vector_cond1_5509	chr2	62411616	62412042	+	5.34080	NA	5' UTR (NM_001159543, exon 1 of 25)	5' UTR (NM_001159543, exon 1 of 25)	402	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding
diff_RLAGL_Vector_cond1_5265	chr2	9754166	9754435	+	5.34072	NA	Intergenic	Intergenic	124300	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_2126	chr12	24734845	24735094	+	5.34063	NA	Intergenic	Intergenic	26715	NM_009104	20135	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding
diff_RLAGL_Vector_cond1_6235	chr3	32365683	32365937	+	5.33893	NA	promoter-TSS (NM_009517)	promoter-TSS (NM_009517)	-145	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding
diff_RLAGL_Vector_cond1_508	chr1	135719553	135719786	+	5.33877	NA	Intergenic	Intergenic	-9528	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding
diff_RLAGL_Vector_cond1_496	chr1	133882374	133882920	+	5.33825	NA	Intergenic	Intergenic	24526	NM_001160422	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding
diff_RLAGL_Vector_cond1_1211	chr10	85827100	85827352	+	5.33731	NA	Intergenic	Intergenic	-44605	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_3140	chr14	55161296	55161607	+	5.33685	NA	Intergenic	Intergenic	-44516	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding
diff_RLAGL_Vector_cond1_7942	chr5	115158090	115158578	+	5.33680	NA	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-158	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding
diff_RLAGL_Vector_cond1_9777	chr8	111731167	111731562	+	5.33669	NA	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	772	NM_001198839	12927	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding
diff_RLAGL_Vector_cond1_5653	chr2	102185943	102186719	+	5.33584	NA	5' UTR (NM_001290784, exon 1 of 6)	5' UTR (NM_001290784, exon 1 of 6)	129	NM_001290784	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_5861	chr2	141289281	141289731	+	5.33516	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-618030	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_1251	chr10	91042293	91042517	+	5.33475	NA	intron (NM_001282947, intron 14 of 26)	RLTR17D_Mm|LTR|ERVK	40338	NM_001282947	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding
diff_RLAGL_Vector_cond1_6214	chr3	22076168	22076481	+	5.33422	NA	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	-328	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_4514	chr17	56935380	56935861	+	5.33385	NA	promoter-TSS (NM_022328)	promoter-TSS (NM_022328)	-232	NM_022328	64144	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	protein-coding
diff_RLAGL_Vector_cond1_3284	chr14	99912032	99912250	+	5.33371	NA	intron (NM_010636, intron 5 of 6)	intron (NM_010636, intron 5 of 6)	237655	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
diff_RLAGL_Vector_cond1_7400	chr4	141578802	141579080	+	5.33338	NA	intron (NM_133754, intron 8 of 8)	intron (NM_133754, intron 8 of 8)	20983	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding
diff_RLAGL_Vector_cond1_9581	chr8	64205399	64205786	+	5.33311	NA	5' UTR (NM_009390, exon 1 of 21)	5' UTR (NM_009390, exon 1 of 21)	401	NM_009390	21892	Mm.418367	NM_009390	ENSMUSG00000053626	Tll1	Tll|Tll-1	tolloid-like	protein-coding
diff_RLAGL_Vector_cond1_1464	chr11	6123612	6123877	+	5.33296	NA	intron (NM_173748, intron 4 of 5)	intron (NM_173748, intron 4 of 5)	49587	NR_029471	100042173	Mm.441799	NR_029471		Rps15a-ps6	Gm11968|OTTMUSG00000005107	ribosomal protein S15A, pseudogene 6	pseudo
diff_RLAGL_Vector_cond1_4172	chr16	88539960	88540349	+	5.33294	NA	Intergenic	L1_Mus3|LINE|L1	23029	NM_018778	54420	Mm.25836	NM_018778	ENSMUSG00000050520	Cldn8	AI648025	claudin 8	protein-coding
diff_RLAGL_Vector_cond1_483	chr1	131867097	131867300	+	5.33266	NA	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-79	NM_144875	226422	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_4920	chr18	65071246	65071495	+	5.33238	NA	intron (NM_031881, intron 1 of 29)	intron (NM_031881, intron 1 of 29)	47843	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding
diff_RLAGL_Vector_cond1_8929	chr7	39588521	39588756	+	5.33174	NA	Intergenic	CpG	70872	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding
diff_RLAGL_Vector_cond1_1911	chr11	104469317	104469518	+	5.33158	NA	Intergenic	CpG	-27126	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding
diff_RLAGL_Vector_cond1_8812	chr7	7209693	7210131	+	5.33073	NA	promoter-TSS (NM_145577)	promoter-TSS (NM_145577)	86	NM_145577	232855	Mm.360403	NM_145577	ENSMUSG00000066838	Zfp772	-	zinc finger protein 772	protein-coding
diff_RLAGL_Vector_cond1_5950	chr2	153425395	153425848	+	5.33030	NA	intron (NM_001134300, intron 5 of 10)	intron (NM_001134300, intron 5 of 10)	18858	NM_001001986	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding
diff_RLAGL_Vector_cond1_6371	chr3	67867386	67867853	+	5.33000	NA	Intergenic	Intergenic	-24601	NM_001113419	100505386	Mm.331064	NM_001113419	ENSMUSG00000102422	Gm21949	Iqcj-schip1|Schip-1-iqcj|Schip1	predicted gene, 21949	protein-coding
diff_RLAGL_Vector_cond1_7483	chr4	154418418	154418796	+	5.32884	NA	intron (NM_001291029, intron 3 of 15)	intron (NM_001291029, intron 3 of 15)	-118712	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding
diff_RLAGL_Vector_cond1_6687	chr3	146150772	146151014	+	5.32746	NA	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	719	NM_001005846	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding
diff_RLAGL_Vector_cond1_3839	chr15	103163235	103163506	+	5.32694	NA	promoter-TSS (NM_027885)	promoter-TSS (NM_027885)	-86	NM_027885	71726	Mm.254820	NM_027885		Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding
diff_RLAGL_Vector_cond1_7885	chr5	104276191	104276404	+	5.32694	NA	Intergenic	MTD|LTR|ERVL-MaLR	-22990	NM_008318	15891	Mm.4987	NM_008318	ENSMUSG00000029306	Ibsp	BSP|BSP II|BSPII|Bsp2	integrin binding sialoprotein	protein-coding
diff_RLAGL_Vector_cond1_4482	chr17	53463250	53463501	+	5.32647	NA	promoter-TSS (NM_172497)	promoter-TSS (NM_172497)	-54	NM_172497	211482	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding
diff_RLAGL_Vector_cond1_10472	chrX	78583780	78584059	+	5.32494	NA	promoter-TSS (NM_027322)	promoter-TSS (NM_027322)	-22	NM_001289683	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding
diff_RLAGL_Vector_cond1_8395	chr6	71440449	71441011	+	5.32467	NA	promoter-TSS (NM_024288)	promoter-TSS (NM_024288)	-93	NM_024288	68477	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_151	chr1	42495976	42496409	+	5.32430	NA	Intergenic	Intergenic	198633	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
diff_RLAGL_Vector_cond1_478	chr1	131193832	131194050	+	5.32392	NA	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	6244	NM_001311094	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding
diff_RLAGL_Vector_cond1_10395	chrX	8252601	8252876	+	5.32083	NA	promoter-TSS (NM_001290430)	promoter-TSS (NM_001290430)	-332	NM_133991	54632	Mm.327529	NM_133991	ENSMUSG00000031171	Ftsj1	AI931847|Ftsj|Ftsjl|Sfc12	FtsJ homolog 1 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_6092	chr2	174472937	174473189	+	5.32033	NA	promoter-TSS (NM_025531)	promoter-TSS (NM_025531)	-122	NM_025531	66390	Mm.182294	NM_025531	ENSMUSG00000016257	Slmo2	2310042G06Rik|AA407013	slowmo homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2204	chr12	41081796	41082165	+	5.31967	NA	intron (NM_053122, intron 3 of 6)	intron (NM_053122, intron 3 of 6)	57890	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_474	chr1	129979074	129979311	+	5.31871	NA	intron (NM_172485, intron 15 of 27)	ORR1A0-int|LTR|ERVL-MaLR	443807	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding
diff_RLAGL_Vector_cond1_3647	chr15	64936316	64936620	+	5.31823	NA	Intergenic	Intergenic	-14172	NM_009623	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding
diff_RLAGL_Vector_cond1_5474	chr2	54778806	54779163	+	5.31775	NA	intron (NM_173030, intron 4 of 12)	intron (NM_173030, intron 4 of 12)	342597	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding
diff_RLAGL_Vector_cond1_9203	chr7	116222760	116223131	+	5.31770	NA	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	14831	NM_001305186	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding
diff_RLAGL_Vector_cond1_9999	chr9	32971984	32972301	+	5.31761	NA	Intergenic	Intergenic	-43176	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA
diff_RLAGL_Vector_cond1_7738	chr5	53961252	53961513	+	5.31748	NA	Intergenic	Intergenic	-37141	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding
diff_RLAGL_Vector_cond1_7042	chr4	71356138	71356876	+	5.31595	NA	Intergenic	Intergenic	-821579	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
diff_RLAGL_Vector_cond1_3534	chr15	38391540	38391812	+	5.31574	NA	Intergenic	Intergenic	-90965	NM_013692	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding
diff_RLAGL_Vector_cond1_5834	chr2	137419824	137420115	+	5.31376	NA	Intergenic	Intergenic	-303449	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding
diff_RLAGL_Vector_cond1_265	chr1	73683572	73683855	+	5.31267	NA	intron (NR_045311, intron 6 of 8)	intron (NR_045311, intron 6 of 8)	171862	NR_105769	102465179		NR_105769	ENSMUSG00000098504	Mir6351	Gm27936|mmu-mir-6351	microRNA 6351	ncRNA
diff_RLAGL_Vector_cond1_4819	chr18	36344063	36344482	+	5.31213	NA	Intergenic	MIR|SINE|MIR	-4352	NM_001081365	66060	Mm.272527	NM_001081365		Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding
diff_RLAGL_Vector_cond1_4689	chr17	90937311	90937555	+	5.31159	NA	intron (NM_020252, intron 4 of 22)	ORR1A3|LTR|ERVL-MaLR	76264	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA
diff_RLAGL_Vector_cond1_10097	chr9	57601139	57601384	+	5.31155	NA	3' UTR (NM_146223, exon 3 of 3)	3' UTR (NM_146223, exon 3 of 3)	5020	NM_146223	235415	Mm.35242	NM_146223	ENSMUSG00000039714	Cplx3	BC016632|CpxIII|ERGIC-53L|ERGL|Lamn1l|Lman1l	complexin 3	protein-coding
diff_RLAGL_Vector_cond1_587	chr1	154150330	154150634	+	5.31060	NA	Intergenic	Intergenic	-50705	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding
diff_RLAGL_Vector_cond1_1822	chr11	90249086	90249450	+	5.30989	NA	promoter-TSS (NM_026178)	promoter-TSS (NM_026178)	-208	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding
diff_RLAGL_Vector_cond1_9858	chr8	126740041	126740270	+	5.30977	NA	Intergenic	Intergenic	-146719	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_4480	chr17	51813207	51813607	+	5.30906	NA	intron (NM_001163632, intron 1 of 10)	CpG	-1353	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_8607	chr6	122469023	122469505	+	5.30895	NA	intron (NM_027664, intron 2 of 5)	MTE2a|LTR|ERVL-MaLR	17041	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding
diff_RLAGL_Vector_cond1_5976	chr2	158080860	158081147	+	5.30860	NA	intron (NR_040609, intron 3 of 3)	L1MB5|LINE|L1	10794	NR_040609	72340	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA
diff_RLAGL_Vector_cond1_5943	chr2	152588588	152588876	+	5.30842	NA	Intergenic	Intergenic	7753	NM_001037752	433490	Mm.23779	NM_001037752	ENSMUSG00000062124	Defb45	Defb27|OTTMUSG00000015859	defensin beta 45	protein-coding
diff_RLAGL_Vector_cond1_6981	chr4	52438614	52439376	+	5.30818	NA	promoter-TSS (NR_045175)	promoter-TSS (NR_045175)	-31	NR_045175	72648	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_6245	chr3	35932965	35933178	+	5.30735	NA	promoter-TSS (NM_001205361)	promoter-TSS (NM_001205361)	-105	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_6077	chr2	173159358	173160016	+	5.30682	NA	TTS (NM_011044)	TTS (NM_011044)	6614	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding
diff_RLAGL_Vector_cond1_2262	chr12	58211266	58211480	+	5.30611	NA	promoter-TSS (NM_009216)	promoter-TSS (NM_009216)	-431	NM_009216	20605	Mm.278336	NM_009216		Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding
diff_RLAGL_Vector_cond1_8287	chr6	42372975	42373496	+	5.30573	NA	promoter-TSS (NM_023580)	promoter-TSS (NM_023580)	33	NM_023580	13835	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding
diff_RLAGL_Vector_cond1_6771	chr3	158062130	158062509	+	5.30559	NA	intron (NM_001289524, intron 12 of 14)	intron (NM_001289524, intron 12 of 14)	25637	NM_001289525	67144	Mm.358704	NM_024194		Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding
diff_RLAGL_Vector_cond1_927	chr10	24629071	24629384	+	5.30456	NA	Intergenic	Intergenic	33785	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding
diff_RLAGL_Vector_cond1_4001	chr16	48672719	48673121	+	5.30420	NA	Intergenic	Intergenic	99036	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding
diff_RLAGL_Vector_cond1_5661	chr2	103144024	103144876	+	5.30331	NA	Intergenic	Intergenic	70775	NM_019735	56369	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_62	chr1	16656499	16657579	+	5.30293	NA	promoter-TSS (NR_037998)	promoter-TSS (NR_037998)	80	NM_001310470	67923	Mm.289248	NM_026456	ENSMUSG00000079658	Tceb1	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146	transcription elongation factor B (SIII), polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_8662	chr6	132961700	132961947	+	5.30257	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-3979	NM_207030	387356	Mm.377917	NM_207030	ENSMUSG00000057699	Tas2r131	T2R31|Tas2r31|mGR31|mt2r61	taste receptor, type 2, member 131	protein-coding
diff_RLAGL_Vector_cond1_8123	chr5	150952601	150953096	+	5.30167	NA	exon (NM_013823, exon 1 of 5)	exon (NM_013823, exon 1 of 5)	241	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding
diff_RLAGL_Vector_cond1_4587	chr17	73258693	73259069	+	5.30133	NA	Intergenic	Intergenic	140415	NM_001033444	381122	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding
diff_RLAGL_Vector_cond1_1454	chr11	3398430	3398687	+	5.30069	NA	intron (NM_010718, intron 1 of 15)	intron (NM_010718, intron 1 of 15)	10680	NM_010718	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding
diff_RLAGL_Vector_cond1_3629	chr15	61618758	61618968	+	5.30059	NA	Intergenic	MIR|SINE|MIR	155588	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA
diff_RLAGL_Vector_cond1_6911	chr4	33247680	33247946	+	5.29970	NA	intron (NM_001033225, intron 1 of 1)	CpG	974	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding
diff_RLAGL_Vector_cond1_3138	chr14	55055417	55055672	+	5.29941	NA	Intergenic	Intergenic	17082	NR_073535	100151693	Mm.378403	NR_073535	ENSMUSG00000072492	Gm10364	EG545052|ENSMUSG00000072492	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
diff_RLAGL_Vector_cond1_6370	chr3	67760380	67760687	+	5.29763	NA	Intergenic	Intergenic	-131687	NM_001113419	100505386	Mm.331064	NM_001113419	ENSMUSG00000102422	Gm21949	Iqcj-schip1|Schip-1-iqcj|Schip1	predicted gene, 21949	protein-coding
diff_RLAGL_Vector_cond1_4530	chr17	63406097	63406487	+	5.29761	NA	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	-93319	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA
diff_RLAGL_Vector_cond1_7096	chr4	84406254	84406662	+	5.29691	NA	intron (NM_172870, intron 3 of 5)	intron (NM_172870, intron 3 of 5)	268628	NM_172870	242509	Mm.190774	NM_172870		Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding
diff_RLAGL_Vector_cond1_3565	chr15	46532898	46533228	+	5.29656	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-36884	NR_040451	74726	Mm.78172	NR_040451		4930523O13Rik	4921524H24Rik	RIKEN cDNA 4930523O13 gene	ncRNA
diff_RLAGL_Vector_cond1_5131	chr19	28963754	28963991	+	5.29650	NA	promoter-TSS (NM_028922)	promoter-TSS (NM_028922)	-48	NM_028922	74411	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding
diff_RLAGL_Vector_cond1_9987	chr9	30820926	30821170	+	5.29604	NA	Intergenic	Intergenic	101404	NM_001024139	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding
diff_RLAGL_Vector_cond1_345	chr1	89015579	89015802	+	5.29507	NA	promoter-TSS (NR_040471)	promoter-TSS (NR_040471)	-423	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA
diff_RLAGL_Vector_cond1_4019	chr16	51911131	51911626	+	5.29400	NA	Intergenic	Intergenic	-120171	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding
diff_RLAGL_Vector_cond1_7284	chr4	125637029	125637247	+	5.29392	NA	intron (NM_001081097, intron 3 of 15)	intron (NM_001081097, intron 3 of 15)	132389	NR_109835	735288		NR_109835	ENSMUSG00000094403	Mir692-2	Mir692-2a|Mir692-3|Mirn692-2|Mirn692-2a|mir-692-2|mmu-mir-692-2	microRNA 692-2	ncRNA
diff_RLAGL_Vector_cond1_7557	chr5	17601764	17602050	+	5.29379	NA	intron (NM_013657, intron 2 of 17)	intron (NM_013657, intron 2 of 17)	27091	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding
diff_RLAGL_Vector_cond1_2117	chr12	21209264	21209485	+	5.29330	NA	intron (NM_001135192, intron 7 of 28)	intron (NM_001135192, intron 7 of 28)	76863	NM_008403	16413	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9710	chr8	91801031	91801501	+	5.29319	NA	5' UTR (NM_001253822, exon 1 of 4)	5' UTR (NM_001253822, exon 1 of 4)	388	NM_008393	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding
diff_RLAGL_Vector_cond1_6781	chr3	159840027	159840279	+	5.29199	NA	intron (NM_026582, intron 1 of 11)	intron (NM_026582, intron 1 of 11)	458	NM_026582	68151	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|Gpr177	wntless homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3880	chr16	17132231	17132476	+	5.29147	NA	promoter-TSS (NM_022324)	promoter-TSS (NM_022324)	30	NM_022324	64136	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding
diff_RLAGL_Vector_cond1_10454	chrX	68678485	68678748	+	5.29123	NA	promoter-TSS (NR_033481)	promoter-TSS (NR_033481)	75	NM_008031	14265	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding
diff_RLAGL_Vector_cond1_5635	chr2	93144702	93145010	+	5.29015	NA	Intergenic	Intergenic	-42728	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding
diff_RLAGL_Vector_cond1_4904	chr18	60748426	60748645	+	5.28969	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-26061	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding
diff_RLAGL_Vector_cond1_2003	chr11	119238406	119238632	+	5.28862	NA	intron (NM_175430, intron 6 of 18)	intron (NM_175430, intron 6 of 18)	9947	NM_175430	207607	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding
diff_RLAGL_Vector_cond1_6416	chr3	82550031	82550275	+	5.28780	NA	Intergenic	Intergenic	-2068	NM_008731	18167	Mm.1433	NM_008731	ENSMUSG00000028004	Npy2r	NPY2-R	neuropeptide Y receptor Y2	protein-coding
diff_RLAGL_Vector_cond1_1377	chr10	119454138	119454518	+	5.28739	NA	5' UTR (NM_133442, exon 1 of 22)	5' UTR (NM_133442, exon 1 of 22)	294	NM_001277292	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_9161	chr7	104199886	104200315	+	5.28499	NA	Intergenic	Intergenic	-9895	NM_147055	259057	Mm.223438	NM_147055	ENSMUSG00000044899	Olfr649	MOR31-7	olfactory receptor 649	protein-coding
diff_RLAGL_Vector_cond1_4244	chr17	8283545	8283818	+	5.28464	NA	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-132	NM_018819	55951	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding
diff_RLAGL_Vector_cond1_520	chr1	137898437	137898796	+	5.28445	NA	Intergenic	Intergenic	-67839	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA
diff_RLAGL_Vector_cond1_2331	chr12	83848745	83848993	+	5.28445	NA	intron (NR_073563, intron 3 of 10)	intron (NR_073563, intron 3 of 10)	-6511	NM_001136075	18222	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	numb gene homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_10136	chr9	66855970	66856211	+	5.28330	NA	intron (NM_173413, intron 3 of 7)	intron (NM_173413, intron 3 of 7)	-21384	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	anterior pharynx defective 1c homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_9856	chr8	126596087	126596422	+	5.28283	NA	Intergenic	Intergenic	-2818	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_224	chr1	65407390	65407775	+	5.28281	NA	Intergenic	Intergenic	96325	NM_139270	213527	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding
diff_RLAGL_Vector_cond1_3195	chr14	68392532	68392817	+	5.28278	NA	Intergenic	Intergenic	141015	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding
diff_RLAGL_Vector_cond1_5070	chr19	7310682	7311080	+	5.28265	NA	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-15434	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding
diff_RLAGL_Vector_cond1_6176	chr3	15157943	15158225	+	5.28247	NA	Intergenic	Intergenic	174218	NM_001076679	751864	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding
diff_RLAGL_Vector_cond1_1415	chr10	125961545	125961802	+	5.28101	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4546	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
diff_RLAGL_Vector_cond1_2878	chr13	93499425	93499679	+	5.28081	NA	5' UTR (NM_021310, exon 1 of 11)	5' UTR (NM_021310, exon 1 of 11)	256	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding
diff_RLAGL_Vector_cond1_8295	chr6	43665847	43666407	+	5.28052	NA	intron (NM_001311111, intron 1 of 7)	GC_rich|Low_complexity|Low_complexity	151	NM_013861	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
diff_RLAGL_Vector_cond1_1970	chr11	116592438	116592790	+	5.28009	NA	Intergenic	Intergenic	-1073	NM_009591	11298	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding
diff_RLAGL_Vector_cond1_4976	chr18	77065019	77065307	+	5.27995	NA	promoter-TSS (NM_001164168)	promoter-TSS (NM_001164168)	-45	NM_001164169	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding
diff_RLAGL_Vector_cond1_6635	chr3	135691119	135691558	+	5.27981	NA	5' UTR (NM_008689, exon 1 of 25)	5' UTR (NM_008689, exon 1 of 25)	209	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding
diff_RLAGL_Vector_cond1_9917	chr9	13749069	13749480	+	5.27923	NA	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	93	NR_024025	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding
diff_RLAGL_Vector_cond1_179	chr1	51996852	51997077	+	5.27855	NA	intron (NM_001308266, intron 2 of 24)	intron (NM_001308266, intron 2 of 24)	9816	NM_001308266	20849	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding
diff_RLAGL_Vector_cond1_5160	chr19	41206814	41207204	+	5.27821	NA	promoter-TSS (NM_011904)	promoter-TSS (NM_011904)	-235	NM_011904	24087	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding
diff_RLAGL_Vector_cond1_9517	chr8	47334132	47334392	+	5.27816	NA	intron (NM_175162, intron 1 of 4)	MER57C2|LTR|ERV1	18086	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding
diff_RLAGL_Vector_cond1_3261	chr14	86837754	86838011	+	5.27801	NA	intron (NM_019670, intron 22 of 27)	MER21C|LTR|ERVL	303232	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
diff_RLAGL_Vector_cond1_4676	chr17	88201315	88201545	+	5.27722	NA	Intergenic	Intergenic	75918	NM_001190356	225058	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding
diff_RLAGL_Vector_cond1_2811	chr13	73603822	73604033	+	5.27642	NA	promoter-TSS (NM_146047)	promoter-TSS (NM_146047)	-75	NM_146047	218335	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding
diff_RLAGL_Vector_cond1_1150	chr10	79417387	79417639	+	5.27429	NA	Intergenic	IAPLTR3-int|LTR|ERVK	-51445	NM_001104537	625029	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding
diff_RLAGL_Vector_cond1_6657	chr3	142318175	142318387	+	5.27429	NA	intron (NM_019808, intron 3 of 12)	intron (NM_019808, intron 3 of 12)	73569	NM_001190857	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding
diff_RLAGL_Vector_cond1_8152	chr6	6862725	6862942	+	5.27353	NA	promoter-TSS (NM_010057)	promoter-TSS (NM_010057)	-501	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding
diff_RLAGL_Vector_cond1_8409	chr6	78447109	78447498	+	5.27336	NA	Intergenic	RLTR22_Mur|LTR|ERVK	21320	NM_009042	19692	Mm.142731	NM_009042	ENSMUSG00000059654	Reg1	-	regenerating islet-derived 1	protein-coding
diff_RLAGL_Vector_cond1_3201	chr14	70288943	70289523	+	5.27303	NA	5' UTR (NM_008915, exon 1 of 14)	5' UTR (NM_008915, exon 1 of 14)	264	NM_001304992	19057	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding
diff_RLAGL_Vector_cond1_8678	chr6	134640813	134641136	+	5.27216	NA	promoter-TSS (NM_026371)	promoter-TSS (NM_026371)	34	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding
diff_RLAGL_Vector_cond1_626	chr1	162946795	162947321	+	5.26987	NA	Intergenic	Intergenic	-9833	NM_001178038	226565	Mm.270516	NM_001178038	ENSMUSG00000095576	Fmo6	-	flavin containing monooxygenase 6	protein-coding
diff_RLAGL_Vector_cond1_9671	chr8	83458299	83458527	+	5.26925	NA	promoter-TSS (NM_001039137)	promoter-TSS (NM_001039137)	-17	NM_001039137	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding
diff_RLAGL_Vector_cond1_7236	chr4	117019329	117019587	+	5.26868	NA	promoter-TSS (NM_001111277)	promoter-TSS (NM_001111277)	50	NM_001111277	108067	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding
diff_RLAGL_Vector_cond1_8784	chr6	149193601	149193862	+	5.26819	NA	Intergenic	RLTR30B_MM|LTR|ERV1	-5019	NM_001113424	232566	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding
diff_RLAGL_Vector_cond1_10351	chr9	120127592	120127933	+	5.26757	NA	promoter-TSS (NM_011029)	promoter-TSS (NM_011029)	-4	NM_011029	16785	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding
diff_RLAGL_Vector_cond1_600	chr1	157525895	157526245	+	5.26734	NA	promoter-TSS (NM_001159986)	promoter-TSS (NM_001159986)	-100	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_45	chr1	10254491	10254721	+	5.26664	NA	Intergenic	Intergenic	-21936	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding
diff_RLAGL_Vector_cond1_2832	chr13	80913378	80913846	+	5.26594	NA	Intergenic	Intergenic	-26791	NR_103550	71416	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA
diff_RLAGL_Vector_cond1_5628	chr2	92008421	92008739	+	5.26571	NA	intron (NM_011957, intron 1 of 11)	intron (NM_011957, intron 1 of 11)	15590	NM_011957	26427	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding
diff_RLAGL_Vector_cond1_5560	chr2	76338890	76339186	+	5.26489	NA	promoter-TSS (NM_001081033)	promoter-TSS (NM_001081033)	-385	NM_001081033	241489	Mm.246613	NM_001081033		Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding
diff_RLAGL_Vector_cond1_2467	chr12	113746305	113746519	+	5.26474	NA	Intergenic	RMER17A2|LTR|ERVK	202504	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding
diff_RLAGL_Vector_cond1_5583	chr2	80581094	80581295	+	5.26324	NA	promoter-TSS (NM_016965)	promoter-TSS (NM_016965)	-12	NM_001290745	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_2101	chr12	16800946	16801156	+	5.26324	NA	promoter-TSS (NM_015764)	promoter-TSS (NM_015764)	-165	NM_015764	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding
diff_RLAGL_Vector_cond1_2866	chr13	90144502	90144782	+	5.26294	NA	Intergenic	Intergenic	54975	NM_025335	66074	Mm.241387	NM_025335		Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding
diff_RLAGL_Vector_cond1_521	chr1	137900203	137900461	+	5.26289	NA	Intergenic	Intergenic	-66123	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA
diff_RLAGL_Vector_cond1_8544	chr6	108999443	108999649	+	5.26255	NA	Intergenic	Intergenic	170905	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding
diff_RLAGL_Vector_cond1_3005	chr14	12821826	12822060	+	5.26148	NA	intron (NM_012061, intron 1 of 28)	CpG	1136	NM_012061	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding
diff_RLAGL_Vector_cond1_567	chr1	150914810	150915197	+	5.26142	NA	intron (NM_001024720, intron 1 of 106)	intron (NM_001024720, intron 1 of 106)	78432	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|Gm201	hemicentin 1	protein-coding
diff_RLAGL_Vector_cond1_6929	chr4	36950301	36950672	+	5.26134	NA	intron (NM_001165999, intron 1 of 7)	CpG	1258	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_7355	chr4	135752634	135753212	+	5.26114	NA	3' UTR (NM_178257, exon 7 of 7)	3' UTR (NM_178257, exon 7 of 7)	-6792	NM_001085509	242702	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding
diff_RLAGL_Vector_cond1_10373	chr9	122805579	122805923	+	5.26113	NA	intron (NM_001013405, intron 1 of 10)	CpG	204	NM_001013405	382117	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_8311	chr6	49349925	49350142	+	5.26103	NA	Intergenic	MLT1E1|LTR|ERVL-MaLR	-17706	NM_001172216	231946	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding
diff_RLAGL_Vector_cond1_3048	chr14	24358371	24358773	+	5.26058	NA	Intergenic	Intergenic	65208	NM_001033214	105418	Mm.2077	NM_001033214	ENSMUSG00000038925	E330034G19Rik	AA415275|ZPAC	RIKEN cDNA E330034G19 gene	protein-coding
diff_RLAGL_Vector_cond1_4671	chr17	87745911	87746289	+	5.26043	NA	exon (NM_199251, exon 2 of 2)	exon (NM_199251, exon 2 of 2)	51894	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding
diff_RLAGL_Vector_cond1_6677	chr3	145575997	145576282	+	5.25960	NA	promoter-TSS (NM_001081094)	promoter-TSS (NM_001081094)	-69	NM_001081094	229937	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding
diff_RLAGL_Vector_cond1_10275	chr9	105537468	105537930	+	5.25948	NA	Intergenic	Intergenic	-16442	NM_001253831	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding
diff_RLAGL_Vector_cond1_5420	chr2	39226207	39226601	+	5.25909	NA	promoter-TSS (NM_024209)	promoter-TSS (NM_024209)	-66	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding
diff_RLAGL_Vector_cond1_8364	chr6	61524064	61524307	+	5.25896	NA	intron (NM_001164316, intron 5 of 10)	ID_B1|SINE|B4	-343375	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
diff_RLAGL_Vector_cond1_1198	chr10	83984792	83985339	+	5.25886	NA	Intergenic	Intergenic	262200	NM_001145198	69784	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding
diff_RLAGL_Vector_cond1_7463	chr4	150962392	150962601	+	5.25876	NA	Intergenic	RMER19B|LTR|ERVK	34497	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding
diff_RLAGL_Vector_cond1_2358	chr12	90298120	90298322	+	5.25777	NA	intron (NM_001252074, intron 6 of 6)	intron (NM_001252074, intron 6 of 6)	440217	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding
diff_RLAGL_Vector_cond1_9079	chr7	75914017	75914266	+	5.25665	NA	Intergenic	Intergenic	65803	NM_029652	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding
diff_RLAGL_Vector_cond1_6360	chr3	65528070	65528289	+	5.25610	NA	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-268	NM_178892	99929	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding
diff_RLAGL_Vector_cond1_1711	chr11	66168021	66168328	+	5.25557	NA	exon (NM_001099633, exon 1 of 69)	exon (NM_001099633, exon 1 of 69)	377	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding
diff_RLAGL_Vector_cond1_2503	chr12	119225436	119225735	+	5.25478	NA	intron (NM_177290, intron 1 of 13)	intron (NM_177290, intron 1 of 13)	12691	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding
diff_RLAGL_Vector_cond1_6052	chr2	170281606	170281927	+	5.25475	NA	Intergenic	Intergenic	-74595	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA
diff_RLAGL_Vector_cond1_4213	chr16	95187294	95187586	+	5.25465	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-70118	NM_001271687	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding
diff_RLAGL_Vector_cond1_8448	chr6	87615255	87615620	+	5.25434	NA	Intergenic	Intergenic	-24736	NM_021381	58182	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pkr1	prokineticin receptor 1	protein-coding
diff_RLAGL_Vector_cond1_331	chr1	87574826	87575085	+	5.25229	NA	intron (NM_001160164, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	928	NM_001160164	23956	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding
diff_RLAGL_Vector_cond1_1876	chr11	100158299	100158507	+	5.25097	NA	Intergenic	Intergenic	-12477	NM_008471	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding
diff_RLAGL_Vector_cond1_6897	chr4	28815469	28815695	+	5.25093	NA	intron (NM_010141, intron 1 of 16)	CpG	2437	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
diff_RLAGL_Vector_cond1_5546	chr2	71598926	71599127	+	5.25060	NA	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-52272	NM_010054	13392	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_2513	chr13	3787975	3788187	+	5.25029	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	16237	NM_027416	70405	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding
diff_RLAGL_Vector_cond1_5358	chr2	26234350	26234572	+	5.25019	NA	intron (NM_001302956, intron 1 of 11)	intron (NM_001302956, intron 1 of 11)	2938	NM_153559	227638	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding
diff_RLAGL_Vector_cond1_6730	chr3	152204625	152204856	+	5.25018	NA	intron (NM_027287, intron 1 of 3)	intron (NM_027287, intron 1 of 3)	5343	NM_027287	67035	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ (Hsp40) homolog, subfamily B, member 4	protein-coding
diff_RLAGL_Vector_cond1_7802	chr5	77460011	77460237	+	5.24994	NA	Intergenic	Intergenic	-5364	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
diff_RLAGL_Vector_cond1_1659	chr11	53875019	53875247	+	5.24907	NA	intron (NM_011396, intron 3 of 9)	intron (NM_011396, intron 3 of 9)	-15877	NR_033332	622459	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115|OTTMUSG00000005650	predicted gene 12216	ncRNA
diff_RLAGL_Vector_cond1_1852	chr11	96943699	96944180	+	5.24781	NA	promoter-TSS (NM_134021)	promoter-TSS (NM_134021)	80	NM_134021	103711	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding
diff_RLAGL_Vector_cond1_5932	chr2	151009071	151009435	+	5.24777	NA	5' UTR (NM_207204, exon 1 of 24)	5' UTR (NM_207204, exon 1 of 24)	145	NM_207204	78177	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding
diff_RLAGL_Vector_cond1_4345	chr17	26939304	26939796	+	5.24698	NA	promoter-TSS (NR_104458)	promoter-TSS (NR_104458)	-12	NM_026948	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_3744	chr15	85653571	85654018	+	5.24622	NA	Intergenic	Intergenic	-49979	NR_110483	102800312	Mm.33117	NR_110483		Lincppara	Mirlet7bhg|linc-Ppara	long intergenic noncoding RNA near Ppara	ncRNA
diff_RLAGL_Vector_cond1_2227	chr12	50943778	50944129	+	5.24574	NA	Intergenic	Intergenic	-61203	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
diff_RLAGL_Vector_cond1_516	chr1	136931159	136931432	+	5.24565	NA	intron (NM_001159769, intron 6 of 8)	intron (NM_001159769, intron 6 of 8)	22335	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding
diff_RLAGL_Vector_cond1_8372	chr6	64754629	64755067	+	5.24559	NA	Intergenic	Intergenic	25702	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9455	chr8	34622740	34623024	+	5.24487	NA	intron (NR_040706, intron 1 of 4)	intron (NR_040706, intron 1 of 4)	17434	NR_040706	330734	Mm.149998	NR_040706		B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA
diff_RLAGL_Vector_cond1_1098	chr10	68361043	68361345	+	5.24470	NA	Intergenic	Intergenic	-40052	NR_045357	75148	Mm.23505	NR_045357		4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA
diff_RLAGL_Vector_cond1_1319	chr10	107799961	107800187	+	5.24424	NA	intron (NM_001177567, intron 34 of 57)	intron (NM_001177567, intron 34 of 57)	-80047	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding
diff_RLAGL_Vector_cond1_8290	chr6	42692885	42693144	+	5.24353	NA	promoter-TSS (NM_029930)	promoter-TSS (NM_029930)	45	NM_029930	77574	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding
diff_RLAGL_Vector_cond1_1362	chr10	117292830	117293094	+	5.24284	NA	promoter-TSS (NM_013590)	promoter-TSS (NM_013590)	-94	NM_013590	17110	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lzp-s	lysozyme 1	protein-coding
diff_RLAGL_Vector_cond1_3432	chr15	6874502	6874757	+	5.24248	NA	promoter-TSS (NM_011019)	promoter-TSS (NM_011019)	-316	NM_001310469	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding
diff_RLAGL_Vector_cond1_9073	chr7	75415613	75415850	+	5.24237	NA	Intergenic	Intergenic	-39803	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding
diff_RLAGL_Vector_cond1_9026	chr7	66377313	66377550	+	5.24194	NA	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	4293	NR_106024	102465640		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA
diff_RLAGL_Vector_cond1_6971	chr4	49599639	49599843	+	5.24179	NA	Intergenic	Intergenic	-1871	NM_025944	67063	Mm.490285	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding
diff_RLAGL_Vector_cond1_6476	chr3	98267198	98267417	+	5.24096	NA	Intergenic	Intergenic	-13124	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding
diff_RLAGL_Vector_cond1_3660	chr15	67083006	67083300	+	5.24095	NA	Intergenic	Intergenic	93729	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_7941	chr5	114588012	114588249	+	5.23999	NA	intron (NM_001004180, intron 1 of 2)	intron (NM_001004180, intron 1 of 2)	19879	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding
diff_RLAGL_Vector_cond1_3930	chr16	32079064	32079283	+	5.23913	NA	5' UTR (NM_177326, exon 1 of 15)	5' UTR (NM_177326, exon 1 of 15)	169	NM_177326	224105	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding
diff_RLAGL_Vector_cond1_3673	chr15	68972368	68972609	+	5.23875	NA	intron (NM_010158, intron 1 of 8)	intron (NM_010158, intron 1 of 8)	44068	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding
diff_RLAGL_Vector_cond1_9959	chr9	21927444	21927674	+	5.23865	NA	promoter-TSS (NM_001164614)	promoter-TSS (NM_001164614)	-24	NR_045606	235043	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding
diff_RLAGL_Vector_cond1_8638	chr6	127945865	127946083	+	5.23845	NA	intron (NM_026743, intron 7 of 7)	intron (NM_026743, intron 7 of 7)	58352	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding
diff_RLAGL_Vector_cond1_231	chr1	66896215	66896442	+	5.23589	NA	Intergenic	Intergenic	-33019	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding
diff_RLAGL_Vector_cond1_5793	chr2	132781625	132782083	+	5.23566	NA	intron (NM_007694, intron 1 of 4)	intron (NM_007694, intron 1 of 4)	576	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding
diff_RLAGL_Vector_cond1_5085	chr19	11092288	11092496	+	5.23554	NA	Intergenic	CpG	-11289	NM_022430	64381	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding
diff_RLAGL_Vector_cond1_10597	chrX	160502154	160502713	+	5.23483	NA	promoter-TSS (NM_001177878)	promoter-TSS (NM_001177878)	-1	NM_172783	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding
diff_RLAGL_Vector_cond1_1033	chr10	50894622	50894856	+	5.23476	NA	promoter-TSS (NM_011376)	promoter-TSS (NM_011376)	-912	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9443	chr8	28938932	28939198	+	5.23469	NA	intron (NM_153135, intron 1 of 17)	intron (NM_153135, intron 1 of 17)	280571	NM_153135	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 homolog D (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_9994	chr9	31869069	31869295	+	5.23460	NA	intron (NM_013800, intron 1 of 3)	intron (NM_013800, intron 1 of 3)	44103	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_670	chr1	171502853	171503130	+	5.23407	NA	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	-487	NM_019484	56009	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding
diff_RLAGL_Vector_cond1_6882	chr4	24496106	24496412	+	5.23302	NA	promoter-TSS (NM_199467)	promoter-TSS (NM_199467)	-203	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
diff_RLAGL_Vector_cond1_1145	chr10	78326223	78326436	+	5.23261	NA	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	13878	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA
diff_RLAGL_Vector_cond1_1776	chr11	79294111	79294329	+	5.23216	NA	Intergenic	MTC|LTR|ERVL-MaLR	-39525	NM_019653	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding
diff_RLAGL_Vector_cond1_2947	chr13	115125754	115125975	+	5.23160	NA	Intergenic	Intergenic	-23900	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding
diff_RLAGL_Vector_cond1_8906	chr7	34234114	34234406	+	5.23156	NA	Intergenic	CpG	-3924	NM_008155	14751	Mm.589	NM_008155		Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding
diff_RLAGL_Vector_cond1_6179	chr3	16183015	16183415	+	5.23011	NA	promoter-TSS (NM_001145919)	promoter-TSS (NM_001145919)	32	NR_027375	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding
diff_RLAGL_Vector_cond1_6110	chr2	178414212	178414448	+	5.22970	NA	promoter-TSS (NM_001081289)	promoter-TSS (NM_001081289)	133	NM_001085501	228966	Mm.472736	NM_001085501	ENSMUSG00000049999	Ppp1r3d	2610024M03Rik|Gm359	protein phosphatase 1, regulatory subunit 3D	protein-coding
diff_RLAGL_Vector_cond1_6335	chr3	60565919	60566299	+	5.22948	NA	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	64930	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_10478	chrX	85776621	85777063	+	5.22922	NA	promoter-TSS (NM_008194)	promoter-TSS (NM_008194)	-23	NM_212444	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding
diff_RLAGL_Vector_cond1_9660	chr8	80880604	80880808	+	5.22764	NA	promoter-TSS (NM_021356)	promoter-TSS (NM_021356)	-187	NM_001301298	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_2739	chr13	62858687	62858908	+	5.22367	NA	promoter-TSS (NM_007994)	promoter-TSS (NM_007994)	-427	NM_007994	14120	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding
diff_RLAGL_Vector_cond1_9862	chr8	127134412	127134697	+	5.22358	NA	intron (NM_001309391, intron 1 of 24)	intron (NM_001309391, intron 1 of 24)	70498	NM_001309392	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding
diff_RLAGL_Vector_cond1_6317	chr3	56045983	56046345	+	5.22346	NA	intron (NM_030595, intron 10 of 57)	Lx8b|LINE|L1	137537	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding
diff_RLAGL_Vector_cond1_7311	chr4	129819654	129820013	+	5.22282	NA	promoter-TSS (NM_008974)	promoter-TSS (NM_008974)	-646	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding
diff_RLAGL_Vector_cond1_5080	chr19	10323340	10323588	+	5.22242	NA	Intergenic	MER20B|DNA|hAT-Charlie	-18587	NM_198114	269060	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding
diff_RLAGL_Vector_cond1_7730	chr5	52717087	52717303	+	5.22128	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-24379	NM_025951	67073	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding
diff_RLAGL_Vector_cond1_2203	chr12	41022964	41023184	+	5.22113	NA	Intergenic	Intergenic	-1016	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8720	chr6	140570141	140570557	+	5.22109	NA	exon (NM_144920, exon 20 of 31)	exon (NM_144920, exon 20 of 31)	-52314	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_3599	chr15	54534099	54534609	+	5.22032	NA	Intergenic	Intergenic	-37012	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding
diff_RLAGL_Vector_cond1_4112	chr16	75592625	75592987	+	5.21925	NA	promoter-TSS (NM_198302)	promoter-TSS (NM_198302)	-85	NM_198302	224344	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding
diff_RLAGL_Vector_cond1_3728	chr15	82338593	82339070	+	5.21908	NA	promoter-TSS (NM_008669)	promoter-TSS (NM_008669)	-5	NM_008669	17939	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding
diff_RLAGL_Vector_cond1_593	chr1	155973119	155973424	+	5.21846	NA	promoter-TSS (NM_001039184)	promoter-TSS (NM_001039184)	-16	NM_001039184	74081	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding
diff_RLAGL_Vector_cond1_4271	chr17	13743805	13744017	+	5.21814	NA	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-16630	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Mllt4	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|S-afadin	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	protein-coding
diff_RLAGL_Vector_cond1_5103	chr19	17776132	17776464	+	5.21807	NA	intron (NM_001190483, intron 2 of 37)	intron (NM_001190483, intron 2 of 37)	61334	NM_001163144	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding
diff_RLAGL_Vector_cond1_1192	chr10	82629443	82629930	+	5.21781	NA	promoter-TSS (NM_172552)	promoter-TSS (NM_172552)	-152	NM_011561	21665	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding
diff_RLAGL_Vector_cond1_9021	chr7	65802801	65803152	+	5.21750	NA	Intergenic	Intergenic	-1076	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA
diff_RLAGL_Vector_cond1_465	chr1	127868588	127868998	+	5.21738	NA	promoter-TSS (NM_178690)	promoter-TSS (NM_178690)	20	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding
diff_RLAGL_Vector_cond1_3579	chr15	51751703	51751956	+	5.21719	NA	Intergenic	RMER1B|Other|Other	113632	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
diff_RLAGL_Vector_cond1_6772	chr3	158176984	158177267	+	5.21718	NA	intron (NM_001081358, intron 17 of 27)	intron (NM_001081358, intron 17 of 27)	140443	NM_001289525	67144	Mm.358704	NM_024194		Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding
diff_RLAGL_Vector_cond1_4617	chr17	78415399	78415617	+	5.21682	NA	intron (NM_001285949, intron 1 of 7)	intron (NM_001285949, intron 1 of 7)	2644	NM_199448	225020	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding
diff_RLAGL_Vector_cond1_119	chr1	33719715	33720287	+	5.21617	NA	promoter-TSS (NM_001159729)	promoter-TSS (NM_001159729)	105	NM_008999	19335	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_6609	chr3	130832956	130833260	+	5.21556	NA	Intergenic	Intergenic	-102710	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding
diff_RLAGL_Vector_cond1_10037	chr9	41745900	41746285	+	5.21471	NA	Intergenic	Intergenic	164166	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA
diff_RLAGL_Vector_cond1_10444	chrX	60404383	60404586	+	5.21419	NA	promoter-TSS (NM_001037863)	promoter-TSS (NM_001037863)	-503	NM_001037863	320940	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding
diff_RLAGL_Vector_cond1_9136	chr7	96951367	96951622	+	5.21362	NA	promoter-TSS (NM_153591)	promoter-TSS (NM_153591)	-33	NM_153591	244141	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding
diff_RLAGL_Vector_cond1_10152	chr9	71543501	71543700	+	5.21345	NA	intron (NM_001033208, intron 10 of 12)	intron (NM_001033208, intron 10 of 12)	48760	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding
diff_RLAGL_Vector_cond1_936	chr10	26320613	26320995	+	5.21087	NA	intron (NM_172787, intron 12 of 21)	intron (NM_172787, intron 12 of 21)	54381	NM_172787	237339	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	l(3)mbt-like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6129	chr2	181496943	181497313	+	5.21085	NA	promoter-TSS (NM_025482)	promoter-TSS (NM_025482)	-14	NM_001291203	66314	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding
diff_RLAGL_Vector_cond1_6431	chr3	85880630	85881036	+	5.21048	NA	intron (NM_177130, intron 1 of 1)	intron (NM_177130, intron 1 of 1)	6685	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_10377	chr9	123260170	123260498	+	5.20979	NA	exon (NM_001002267, exon 1 of 1)	exon (NM_001002267, exon 1 of 1)	455	NM_001002267	72309	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding
diff_RLAGL_Vector_cond1_676	chr1	172563117	172563442	+	5.20866	NA	non-coding (NR_027644, exon 6 of 6)	non-coding (NR_027644, exon 6 of 6)	3373	NR_027644	240916	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding
diff_RLAGL_Vector_cond1_3489	chr15	25663088	25663415	+	5.20858	NA	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	40701	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799	myosin X	protein-coding
diff_RLAGL_Vector_cond1_9563	chr8	57959673	57959899	+	5.20670	NA	intron (NM_175032, intron 5 of 11)	intron (NM_175032, intron 5 of 11)	-306731	NM_144731	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding
diff_RLAGL_Vector_cond1_2105	chr12	17256989	17257227	+	5.20664	NA	Intergenic	Intergenic	-9487	NM_027959	71853	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding
diff_RLAGL_Vector_cond1_3746	chr15	85859389	85859824	+	5.20621	NA	promoter-TSS (NM_001168672)	promoter-TSS (NM_001168672)	-101	NM_001168672	29870	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding
diff_RLAGL_Vector_cond1_7615	chr5	32192125	32192342	+	5.20611	NA	Intergenic	Intergenic	-40475	NM_030072	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding
diff_RLAGL_Vector_cond1_7256	chr4	120191837	120192337	+	5.20533	NA	Intergenic	Intergenic	30663	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	VIC	endothelin 2	protein-coding
diff_RLAGL_Vector_cond1_9314	chr7	141221782	141222171	+	5.20421	NA	promoter-TSS (NR_029793)	promoter-TSS (NR_029793)	-483	NR_029793	387206		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA
diff_RLAGL_Vector_cond1_6026	chr2	166996347	166996572	+	5.20375	NA	promoter-TSS (NM_001109905)	promoter-TSS (NM_001109905)	-160	NM_001291160	20853	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen (RNA binding protein) homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2133	chr12	26071637	26071865	+	5.20268	NA	Intergenic	Intergenic	138754	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA
diff_RLAGL_Vector_cond1_3081	chr14	34281757	34282069	+	5.20235	NA	intron (NM_029389, intron 2 of 10)	MLT1F1|LTR|ERVL-MaLR	28590	NM_029389	75698	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding
diff_RLAGL_Vector_cond1_8091	chr5	145464285	145464492	+	5.20202	NA	intron (NM_007820, intron 3 of 12)	intron (NM_007820, intron 3 of 12)	5335	NM_007820	13114	Mm.378905	NM_007820	ENSMUSG00000038656	Cyp3a16	-	cytochrome P450, family 3, subfamily a, polypeptide 16	protein-coding
diff_RLAGL_Vector_cond1_9614	chr8	71602596	71603220	+	5.20096	NA	exon (NM_001166213, exon 8 of 15)	exon (NM_001166213, exon 8 of 15)	5262	NM_001166213	100037278	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding
diff_RLAGL_Vector_cond1_1206	chr10	85127881	85128222	+	5.20092	NA	promoter-TSS (NM_028832)	promoter-TSS (NM_028832)	-24	NM_028832	74238	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding
diff_RLAGL_Vector_cond1_8068	chr5	139732573	139732950	+	5.20079	NA	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	3572	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding
diff_RLAGL_Vector_cond1_10108	chr9	60286259	60286579	+	5.20015	NA	intron (NM_001040426, intron 6 of 17)	intron (NM_001040426, intron 6 of 17)	-145199	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_6314	chr3	55832512	55832762	+	5.19997	NA	intron (NM_030595, intron 38 of 57)	intron (NM_030595, intron 38 of 57)	-14468	NR_033592	71182	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo
diff_RLAGL_Vector_cond1_9352	chr8	6011237	6011469	+	5.19890	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-906121	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
diff_RLAGL_Vector_cond1_4552	chr17	66609922	66610410	+	5.19867	NA	Intergenic	Intergenic	-15544	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding
diff_RLAGL_Vector_cond1_1859	chr11	97531714	97531987	+	5.19819	NA	exon (NM_018873, exon 12 of 20)	exon (NM_018873, exon 12 of 20)	-31510	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding
diff_RLAGL_Vector_cond1_855	chr10	7055224	7055469	+	5.19787	NA	Intergenic	Intergenic	-32161	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding
diff_RLAGL_Vector_cond1_4620	chr17	78736269	78736963	+	5.19743	NA	promoter-TSS (NM_011500)	promoter-TSS (NM_011500)	-56	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding
diff_RLAGL_Vector_cond1_833	chr1	195130960	195131170	+	5.19739	NA	intron (NM_013499, intron 1 of 9)	intron (NM_013499, intron 1 of 9)	505	NM_013499	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding
diff_RLAGL_Vector_cond1_1176	chr10	81069836	81070189	+	5.19736	NA	promoter-TSS (NM_022653)	promoter-TSS (NM_022653)	-71	NM_022653	50492	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding
diff_RLAGL_Vector_cond1_10383	chr9	124282151	124282367	+	5.19677	NA	Intergenic	Intergenic	30435	NM_001243117	630836	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding
diff_RLAGL_Vector_cond1_899	chr10	16474055	16474379	+	5.19671	NA	Intergenic	RMER19B|LTR|ERVK	621565	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA
diff_RLAGL_Vector_cond1_6020	chr2	165884662	165884893	+	5.19615	NA	promoter-TSS (NM_001252587)	promoter-TSS (NM_001252587)	61	NM_027230	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding
diff_RLAGL_Vector_cond1_8042	chr5	136135913	136136176	+	5.19539	NA	promoter-TSS (NM_027891)	promoter-TSS (NM_027891)	30	NM_027891	71735	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8643	chr6	128285797	128286071	+	5.19442	NA	intron (NM_011567, intron 1 of 11)	intron (NM_011567, intron 1 of 11)	14879	NM_011567	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding
diff_RLAGL_Vector_cond1_8102	chr5	147894722	147894947	+	5.19411	NA	promoter-TSS (NM_027872)	promoter-TSS (NM_027872)	-32	NM_027872	71706	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding
diff_RLAGL_Vector_cond1_3141	chr14	55279401	55279660	+	5.19409	NA	Intergenic	Intergenic	57523	NM_027790	71412	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding
diff_RLAGL_Vector_cond1_10101	chr9	59486563	59487047	+	5.19390	NA	promoter-TSS (NM_019927)	promoter-TSS (NM_019927)	-431	NM_019927	23806	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_136	chr1	37864719	37865017	+	5.19271	NA	intron (NM_001290720, intron 1 of 17)	CpG	214	NM_207228	211484	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding
diff_RLAGL_Vector_cond1_7821	chr5	87457758	87458007	+	5.19216	NA	Intergenic	Intergenic	24376	NM_001024148	552899	Mm.26794	NM_001024148	ENSMUSG00000029268	Ugt2a2	-	UDP glucuronosyltransferase 2 family, polypeptide A2	protein-coding
diff_RLAGL_Vector_cond1_7422	chr4	144947948	144948211	+	5.19114	NA	Intergenic	Intergenic	54942	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding
diff_RLAGL_Vector_cond1_5824	chr2	136891943	136892210	+	5.18730	NA	promoter-TSS (NM_021527)	promoter-TSS (NM_021527)	-187	NM_028834	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_2753	chr13	64349566	64349774	+	5.18676	NA	Intergenic	Intergenic	20850	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding
diff_RLAGL_Vector_cond1_3098	chr14	40830153	40830382	+	5.18669	NA	intron (NM_177816, intron 6 of 7)	intron (NM_177816, intron 6 of 7)	62698	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding
diff_RLAGL_Vector_cond1_5149	chr19	37233961	37234259	+	5.18666	NA	Intergenic	CpG	26565	NM_001164336	69104	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding
diff_RLAGL_Vector_cond1_352	chr1	91207635	91207886	+	5.18663	NA	TTS (NM_001168392)	TTS (NM_001168392)	27938	NM_016894	51801	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding
diff_RLAGL_Vector_cond1_251	chr1	71421900	71422131	+	5.18631	NA	Intergenic	Intergenic	-7105	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
diff_RLAGL_Vector_cond1_4860	chr18	44623837	44624123	+	5.18613	NA	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-37685	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA
diff_RLAGL_Vector_cond1_5311	chr2	18064421	18064871	+	5.18604	NA	promoter-TSS (NM_001252561)	promoter-TSS (NM_001252561)	61	NR_045539	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	protein-coding
diff_RLAGL_Vector_cond1_8361	chr6	60828553	60829043	+	5.18517	NA	5' UTR (NM_001042451, exon 1 of 6)	5' UTR (NM_001042451, exon 1 of 6)	206	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding
diff_RLAGL_Vector_cond1_1346	chr10	114995739	114995999	+	5.18494	NA	Intergenic	Lx7|LINE|L1	189153	NM_173391	216343	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding
diff_RLAGL_Vector_cond1_8437	chr6	86004354	86004586	+	5.18477	NA	Intergenic	RodERV21-int|LTR|ERV1	-12721	NM_012013	26910	Mm.8024	NM_012013	ENSMUSG00000030001	Figla	bHLHc8	folliculogenesis specific basic helix-loop-helix	protein-coding
diff_RLAGL_Vector_cond1_9835	chr8	121898637	121898845	+	5.18475	NA	intron (NM_011404, intron 1 of 9)	intron (NM_011404, intron 1 of 9)	8945	NM_011404	20539	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding
diff_RLAGL_Vector_cond1_9845	chr8	122989078	122989373	+	5.18455	NA	intron (NR_037865, intron 1 of 13)	intron (NR_037865, intron 1 of 13)	53059	NM_001081379	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding
diff_RLAGL_Vector_cond1_293	chr1	78312888	78313363	+	5.18443	NA	intron (NM_001004173, intron 1 of 4)	intron (NM_001004173, intron 1 of 4)	2779	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding
diff_RLAGL_Vector_cond1_5315	chr2	19276106	19276440	+	5.18417	NA	intron (NM_001271563, intron 10 of 18)	intron (NM_001271563, intron 10 of 18)	-68044	NR_126563	108871	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA
diff_RLAGL_Vector_cond1_5094	chr19	14740999	14741198	+	5.18405	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-142915	NM_001302950	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4, homolog of Drosophila E(spl)	protein-coding
diff_RLAGL_Vector_cond1_970	chr10	31609706	31610029	+	5.18348	NA	promoter-TSS (NM_001146349)	promoter-TSS (NM_001146349)	-142	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
diff_RLAGL_Vector_cond1_6034	chr2	168078464	168078827	+	5.18329	NA	Intergenic	Intergenic	-2359	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding
diff_RLAGL_Vector_cond1_7964	chr5	120505458	120505724	+	5.18307	NA	Intergenic	Intergenic	-1968	NM_023625	71772	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_4846	chr18	42274958	42275335	+	5.18295	NA	promoter-TSS (NM_172626)	promoter-TSS (NM_172626)	51	NR_033452	100042757	Mm.100172	NR_033452		Gm4013	-	predicted gene 4013	ncRNA
diff_RLAGL_Vector_cond1_292	chr1	78309327	78309673	+	5.18277	NA	promoter-TSS (NM_001004173)	promoter-TSS (NM_001004173)	-846	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding
diff_RLAGL_Vector_cond1_9993	chr9	31279985	31280493	+	5.18273	NA	Intergenic	Intergenic	8838	NM_001101597	638580	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding
diff_RLAGL_Vector_cond1_7976	chr5	124004717	124005109	+	5.18239	NA	3' UTR (NM_177876, exon 4 of 4)	3' UTR (NM_177876, exon 4 of 4)	8061	NR_105999	102465625		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA
diff_RLAGL_Vector_cond1_4157	chr16	86816759	86817011	+	5.18064	NA	Intergenic	Intergenic	-537300	NM_026366	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
diff_RLAGL_Vector_cond1_2903	chr13	104228663	104229000	+	5.18046	NA	promoter-TSS (NM_172807)	promoter-TSS (NM_172807)	13	NM_172807	238831	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding
diff_RLAGL_Vector_cond1_6969	chr4	49536100	49536384	+	5.18011	NA	3' UTR (NM_144903, exon 9 of 9)	3' UTR (NM_144903, exon 9 of 9)	13304	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding
diff_RLAGL_Vector_cond1_7955	chr5	118245030	118245327	+	5.17945	NA	promoter-TSS (NM_172998)	promoter-TSS (NM_172998)	-49	NM_001081236	76792	Mm.103428	NM_001081236		2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding
diff_RLAGL_Vector_cond1_2367	chr12	91538600	91538842	+	5.17939	NA	3' UTR (NM_011648, exon 10 of 10)	3' UTR (NM_011648, exon 10 of 10)	50928	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding
diff_RLAGL_Vector_cond1_3697	chr15	75929771	75930143	+	5.17786	NA	promoter-TSS (NM_031201)	promoter-TSS (NM_031201)	-227	NM_031201	22122	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding
diff_RLAGL_Vector_cond1_7496	chr4	155601886	155602186	+	5.17777	NA	intron (NM_177186, intron 1 of 8)	CpG	620	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding
diff_RLAGL_Vector_cond1_5312	chr2	18195721	18195999	+	5.17775	NA	intron (NR_045538, intron 14 of 22)	intron (NR_045538, intron 14 of 22)	131275	NR_045539	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	protein-coding
diff_RLAGL_Vector_cond1_10273	chr9	105395124	105395636	+	5.17772	NA	promoter-TSS (NM_025651)	promoter-TSS (NM_025651)	-12	NM_025651	66595	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8553	chr6	113053103	113053373	+	5.17643	NA	intron (NM_008188, intron 3 of 9)	intron (NM_008188, intron 3 of 9)	6911	NM_008188	14911	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_6497	chr3	101708960	101709293	+	5.17633	NA	Intergenic	Intergenic	-104419	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
diff_RLAGL_Vector_cond1_7329	chr4	133479676	133480248	+	5.17626	NA	promoter-TSS (NM_175307)	promoter-TSS (NM_175307)	-171	NM_175307	100342	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding
diff_RLAGL_Vector_cond1_5563	chr2	76647969	76648416	+	5.17589	NA	promoter-TSS (NM_011871)	promoter-TSS (NM_011871)	-198	NM_011871	23992	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding
diff_RLAGL_Vector_cond1_9211	chr7	120835450	120835694	+	5.17429	NA	Intergenic	Intergenic	-7259	NM_007908	13631	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding
diff_RLAGL_Vector_cond1_5455	chr2	50049016	50049291	+	5.17425	NA	Intergenic	Intergenic	-17276	NM_177139	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_6799	chr4	5531587	5531838	+	5.17403	NA	Intergenic	Intergenic	-100616	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA
diff_RLAGL_Vector_cond1_4448	chr17	46704987	46705252	+	5.17326	NA	promoter-TSS (NM_009358)	promoter-TSS (NM_009358)	-117	NM_009358	21770	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding
diff_RLAGL_Vector_cond1_276	chr1	74961691	74962022	+	5.17218	NA	Intergenic	Intergenic	-10184	NM_001313683	16147	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding
diff_RLAGL_Vector_cond1_9184	chr7	109139505	109139721	+	5.17210	NA	intron (NM_001302205, intron 3 of 3)	intron (NM_001302205, intron 3 of 3)	30899	NM_001302206	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding
diff_RLAGL_Vector_cond1_486	chr1	132126014	132126301	+	5.17099	NA	intron (NM_008795, intron 1 of 15)	intron (NM_008795, intron 1 of 15)	13528	NM_008795	18557	Mm.28130	NM_008795		Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding
diff_RLAGL_Vector_cond1_5489	chr2	58842484	58842801	+	5.17064	NA	intron (NM_001001178, intron 11 of 13)	MLTR11A|LTR|ERVK	87458	NM_001289659	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
diff_RLAGL_Vector_cond1_7960	chr5	119069967	119070198	+	5.17022	NA	Intergenic	Intergenic	-38154	NR_040693	73477	Mm.410863	NR_040693	ENSMUSG00000100573	1700081H04Rik	-	RIKEN cDNA 1700081H04 gene	ncRNA
diff_RLAGL_Vector_cond1_1366	chr10	117846121	117846411	+	5.17021	NA	promoter-TSS (NM_024457)	promoter-TSS (NM_024457)	-292	NM_024457	215449	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding
diff_RLAGL_Vector_cond1_7576	chr5	22746180	22746414	+	5.16968	NA	exon (NM_029990, exon 1 of 3)	exon (NM_029990, exon 1 of 3)	104	NM_029990	269629	Mm.371712	NM_029990	ENSMUSG00000106379	Lhfpl3	A930031L14Rik	lipoma HMGIC fusion partner-like 3	protein-coding
diff_RLAGL_Vector_cond1_961	chr10	30802771	30803107	+	5.16960	NA	5' UTR (NM_172495, exon 1 of 16)	5' UTR (NM_172495, exon 1 of 16)	168	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding
diff_RLAGL_Vector_cond1_9776	chr8	111705164	111705374	+	5.16941	NA	Intergenic	Intergenic	-14259	NM_025583	66473	Mm.34374	NM_025583	ENSMUSG00000031957	Ctrb1	2200008D09Rik|AI504462|Ctrb|Prt-2	chymotrypsinogen B1	protein-coding
diff_RLAGL_Vector_cond1_2689	chr13	55362759	55363012	+	5.16842	NA	promoter-TSS (NM_025828)	promoter-TSS (NM_025828)	-102	NM_025828	66890	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding
diff_RLAGL_Vector_cond1_5392	chr2	32451375	32451714	+	5.16772	NA	promoter-TSS (NM_146118)	promoter-TSS (NM_146118)	-74	NM_146118	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding
diff_RLAGL_Vector_cond1_3161	chr14	60656060	60656282	+	5.16765	NA	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	21466	NM_001033272	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding
diff_RLAGL_Vector_cond1_3941	chr16	33963510	33963742	+	5.16721	NA	intron (NM_009471, intron 2 of 5)	intron (NM_009471, intron 2 of 5)	3377	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding
diff_RLAGL_Vector_cond1_8515	chr6	100562968	100563205	+	5.16707	NA	Intergenic	CpG	35686	NR_040525	73395	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA
diff_RLAGL_Vector_cond1_92	chr1	23762857	23763207	+	5.16454	NA	exon (NM_172124, exon 1 of 4)	exon (NM_172124, exon 1 of 4)	1106	NM_172124	280645	Mm.471661	NM_172124		B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding
diff_RLAGL_Vector_cond1_7799	chr5	76309206	76309459	+	5.16135	NA	intron (NR_035422, intron 1 of 2)	intron (NR_035422, intron 1 of 2)	-4540	NM_001289826	12753	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding
diff_RLAGL_Vector_cond1_2463	chr12	112828971	112829232	+	5.16055	NA	5' UTR (NM_028023, exon 1 of 2)	5' UTR (NM_028023, exon 1 of 2)	288	NM_028023	71963	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding
diff_RLAGL_Vector_cond1_7401	chr4	141601209	141601437	+	5.16001	NA	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	-1399	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding
diff_RLAGL_Vector_cond1_614	chr1	161196019	161196239	+	5.15955	NA	Intergenic	Intergenic	-36815	NM_001195189	100502590	Mm.449990	NM_001195189		4930469G21Rik	-	RIKEN cDNA 4930469G21 gene	protein-coding
diff_RLAGL_Vector_cond1_837	chr10	3740272	3740547	+	5.15952	NA	promoter-TSS (NM_001159942)	promoter-TSS (NM_001159942)	32	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
diff_RLAGL_Vector_cond1_7586	chr5	24423519	24423763	+	5.15850	NA	promoter-TSS (NM_007668)	promoter-TSS (NM_007668)	-111	NM_007668	12568	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding
diff_RLAGL_Vector_cond1_7489	chr4	155086259	155086575	+	5.15816	NA	promoter-TSS (NM_001081100)	promoter-TSS (NM_001081100)	-120	NM_026395	67830	Mm.241604	NM_026395	ENSMUSG00000029048	Rer1	1110060F11Rik|5830454N22Rik|AU043380	RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10318	chr9	115356838	115357363	+	5.15767	NA	Intergenic	Intergenic	20939	NR_040730	73856	Mm.399156	NR_040730		4930428G15Rik	-	RIKEN cDNA 4930428G15 gene	ncRNA
diff_RLAGL_Vector_cond1_4902	chr18	58659275	58659760	+	5.15764	NA	promoter-TSS (NM_025478)	promoter-TSS (NM_025478)	35	NM_025478	66307	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7473	chr4	152296961	152297376	+	5.15761	NA	promoter-TSS (NM_133788)	promoter-TSS (NM_133788)	-46	NR_037908	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|OTTMUSG00000010406|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding
diff_RLAGL_Vector_cond1_7605	chr5	30588050	30588299	+	5.15750	NA	promoter-TSS (NM_010608)	promoter-TSS (NM_010608)	4	NM_010608	16527	Mm.439936	NM_010608	ENSMUSG00000049265	Kcnk3	TASK|Task-1|cTBAK-1	potassium channel, subfamily K, member 3	protein-coding
diff_RLAGL_Vector_cond1_1988	chr11	118290148	118290462	+	5.15693	NA	promoter-TSS (NM_001033528)	promoter-TSS (NM_001033528)	-61	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding
diff_RLAGL_Vector_cond1_7086	chr4	82848890	82849178	+	5.15684	NA	intron (NM_026647, intron 2 of 8)	intron (NM_026647, intron 2 of 8)	10627	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding
diff_RLAGL_Vector_cond1_3130	chr14	51149095	51149505	+	5.15677	NA	Intergenic	Intergenic	-2533	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding
diff_RLAGL_Vector_cond1_5703	chr2	112239069	112239394	+	5.15668	NA	promoter-TSS (NM_207206)	promoter-TSS (NM_207206)	-610	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding
diff_RLAGL_Vector_cond1_10132	chr9	66266664	66266875	+	5.15659	NA	intron (NM_010019, intron 9 of 11)	intron (NM_010019, intron 9 of 11)	-83681	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1	protein-coding
diff_RLAGL_Vector_cond1_2488	chr12	118186644	118187055	+	5.15593	NA	intron (NM_010060, intron 6 of 81)	intron (NM_010060, intron 6 of 81)	12194	NM_010060	13411	Mm.390540	NM_010060	ENSMUSG00000018581	Dnah11	Dnahc11|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd	dynein, axonemal, heavy chain 11	protein-coding
diff_RLAGL_Vector_cond1_3742	chr15	85336714	85336959	+	5.15526	NA	intron (NM_016843, intron 1 of 11)	CpG	455	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding
diff_RLAGL_Vector_cond1_4029	chr16	52489400	52489663	+	5.15510	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-36534	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_3679	chr15	72859323	72859596	+	5.15500	NA	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-49135	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA
diff_RLAGL_Vector_cond1_9528	chr8	48555100	48555961	+	5.15462	NA	intron (NM_011857, intron 2 of 28)	CpG	119160	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_5114	chr19	21652910	21653274	+	5.15421	NA	promoter-TSS (NM_146096)	promoter-TSS (NM_146096)	-217	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding
diff_RLAGL_Vector_cond1_5982	chr2	158624920	158625204	+	5.15338	NA	5' UTR (NM_175419, exon 1 of 9)	5' UTR (NM_175419, exon 1 of 9)	149	NM_175419	109275	Mm.27747	NM_175419	ENSMUSG00000037761	Actr5	AA545173|B430109J19Rik	ARP5 actin-related protein 5	protein-coding
diff_RLAGL_Vector_cond1_1879	chr11	100712376	100712583	+	5.15307	NA	promoter-TSS (NM_020004)	promoter-TSS (NM_020004)	-12	NM_001038010	14534	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding
diff_RLAGL_Vector_cond1_550	chr1	146357089	146357391	+	5.15290	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-138426	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding
diff_RLAGL_Vector_cond1_5694	chr2	110156358	110156693	+	5.15273	NA	Intergenic	RMER6C|LTR|ERVK	-106046	NR_040508	75517	Mm.363927	NR_040508	ENSMUSG00000086186	Ccdc34os	1700024P03Rik	coiled-coil domain containing 34, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_4891	chr18	55770051	55770264	+	5.15173	NA	Intergenic	Intergenic	-661975	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_2398	chr12	102704865	102705191	+	5.15131	NA	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	-159	NM_172584	217837	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding
diff_RLAGL_Vector_cond1_5598	chr2	84715385	84715793	+	5.15035	NA	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-425	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_4651	chr17	84957681	84957988	+	5.15034	NA	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	-124	NR_027930	68531	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA
diff_RLAGL_Vector_cond1_4547	chr17	66007569	66007793	+	5.14996	NA	intron (NM_001025572, intron 8 of 12)	intron (NM_001025572, intron 8 of 12)	-56494	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7048	chr4	72214495	72214786	+	5.14968	NA	Intergenic	Lx8b|LINE|L1	13396	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA
diff_RLAGL_Vector_cond1_789	chr1	189922207	189922490	+	5.14911	NA	promoter-TSS (NM_026796)	promoter-TSS (NM_026796)	-60	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_3996	chr16	46117643	46118088	+	5.14884	NA	exon (NM_032465, exon 2 of 15)	exon (NM_032465, exon 2 of 15)	2383	NM_032465	84544	Mm.29204	NM_032465	ENSMUSG00000022657	Cd96	1700109I12Rik|Tactile	CD96 antigen	protein-coding
diff_RLAGL_Vector_cond1_2024	chr11	121421171	121421411	+	5.14873	NA	promoter-TSS (NM_181420)	promoter-TSS (NM_181420)	-82	NM_181420	238024	Mm.117394	NM_181420	ENSMUSG00000039253	Fn3krp	FN3K-RP	fructosamine 3 kinase related protein	protein-coding
diff_RLAGL_Vector_cond1_7385	chr4	140701311	140701524	+	5.14857	NA	promoter-TSS (NM_173867)	promoter-TSS (NM_173867)	-56	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding
diff_RLAGL_Vector_cond1_806	chr1	191575423	191575872	+	5.14834	NA	promoter-TSS (NM_001306204)	promoter-TSS (NM_001306204)	11	NM_001306204	77065	Mm.338175	NM_178632		Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding
diff_RLAGL_Vector_cond1_6923	chr4	35052164	35052378	+	5.14734	NA	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-99784	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding
diff_RLAGL_Vector_cond1_4789	chr18	24054753	24055117	+	5.14712	NA	Intergenic	Intergenic	-34164	NM_021559	59057	Mm.417427	NM_021559		Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf191|Znf24|Znp191	zinc finger protein 24	protein-coding
diff_RLAGL_Vector_cond1_4301	chr17	21450173	21450455	+	5.14628	NA	promoter-TSS (NM_009558)	promoter-TSS (NM_009558)	-60	NM_001308323	22709	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding
diff_RLAGL_Vector_cond1_2490	chr12	118288933	118289229	+	5.14541	NA	intron (NM_009239, intron 3 of 5)	intron (NM_009239, intron 3 of 5)	12359	NM_009239	20688	Mm.34699	NM_009239		Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding
diff_RLAGL_Vector_cond1_8401	chr6	72097270	72097640	+	5.14412	NA	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-153	NM_001035228	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding
diff_RLAGL_Vector_cond1_3223	chr14	76217989	76218219	+	5.14409	NA	Intergenic	Intergenic	107213	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_9494	chr8	41483355	41483642	+	5.14383	NA	Intergenic	Intergenic	-66380	NM_013522	14300	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding
diff_RLAGL_Vector_cond1_8626	chr6	126940489	126940759	+	5.14338	NA	intron (NM_138594, intron 1 of 13)	Lx8|LINE|L1	658	NM_138594	28040	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding
diff_RLAGL_Vector_cond1_1084	chr10	61147623	61147976	+	5.14330	NA	promoter-TSS (NM_001316673)	promoter-TSS (NM_001316673)	-115	NM_009163	20397	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding
diff_RLAGL_Vector_cond1_5067	chr19	6942294	6942601	+	5.14307	NA	promoter-TSS (NM_001285453)	promoter-TSS (NM_001285453)	3	NM_001177361	107173	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding
diff_RLAGL_Vector_cond1_8645	chr6	128437988	128438244	+	5.14307	NA	promoter-TSS (NR_028593)	promoter-TSS (NR_028593)	515	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_7889	chr5	105415477	105415703	+	5.14254	NA	promoter-TSS (NM_001033550)	promoter-TSS (NM_001033550)	-185	NM_001033550	433926	Mm.439781	NM_001033550		Lrrc8b	R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding
diff_RLAGL_Vector_cond1_9037	chr7	68320373	68320617	+	5.14161	NA	intron (NM_001013811, intron 3 of 8)	intron (NM_001013811, intron 3 of 8)	-43901	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA
diff_RLAGL_Vector_cond1_4855	chr18	43732157	43732492	+	5.13987	NA	intron (NM_009258, intron 3 of 3)	intron (NM_009258, intron 3 of 3)	4913	NM_009258	20730	Mm.272	NM_009258	ENSMUSG00000024503	Spink1	Spink3|p12	serine peptidase inhibitor, Kazal type 1	protein-coding
diff_RLAGL_Vector_cond1_6149	chr3	8766670	8767456	+	5.13779	NA	Intergenic	CpG	-100025	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding
diff_RLAGL_Vector_cond1_1588	chr11	31870670	31871025	+	5.13703	NA	promoter-TSS (NM_026252)	promoter-TSS (NM_026252)	-93	NM_001290678	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_4436	chr17	45506778	45507084	+	5.13661	NA	promoter-TSS (NM_198608)	promoter-TSS (NM_198608)	90	NM_198608	224805	Mm.329063	NM_198608	ENSMUSG00000023938	Aars2	Aarsl|AlaRS|Gm89	alanyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
diff_RLAGL_Vector_cond1_9520	chr8	47675024	47675768	+	5.13589	NA	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-237	NM_023503	69260	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding
diff_RLAGL_Vector_cond1_2526	chr13	5527221	5527538	+	5.13458	NA	Intergenic	RMER6D|LTR|ERVK	330713	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
diff_RLAGL_Vector_cond1_5668	chr2	104743360	104743574	+	5.13394	NA	promoter-TSS (NM_144804)	promoter-TSS (NM_144804)	-666	NM_144804	211896	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_7184	chr4	106560680	106561134	+	5.13294	NA	promoter-TSS (NM_053272)	promoter-TSS (NM_053272)	-131	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding
diff_RLAGL_Vector_cond1_8702	chr6	137597669	137597926	+	5.13288	NA	intron (NM_007945, intron 1 of 21)	intron (NM_007945, intron 1 of 21)	-26788	NM_001271595	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding
diff_RLAGL_Vector_cond1_3326	chr14	104522195	104522504	+	5.13228	NA	intron (NM_026047, intron 1 of 5)	CpG	317	NM_026047	72486	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding
diff_RLAGL_Vector_cond1_4949	chr18	70531417	70531628	+	5.13182	NA	Intergenic	MTD|LTR|ERVL-MaLR	-1201	NM_001136090	26447	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding
diff_RLAGL_Vector_cond1_4667	chr17	87567240	87567549	+	5.13103	NA	Intergenic	Intergenic	-68585	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_10147	chr9	70678830	70679092	+	5.12927	NA	promoter-TSS (NM_007399)	promoter-TSS (NM_007399)	-40	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding
diff_RLAGL_Vector_cond1_7474	chr4	152360918	152361161	+	5.12918	NA	exon (NM_001081376, exon 9 of 42)	exon (NM_001081376, exon 9 of 42)	22388	NM_029216	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding
diff_RLAGL_Vector_cond1_4477	chr17	50685028	50685416	+	5.12890	NA	intron (NM_013880, intron 5 of 5)	L2b|LINE|L2	-13459	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding
diff_RLAGL_Vector_cond1_2517	chr13	4233260	4233838	+	5.12842	NA	promoter-TSS (NM_001013785)	promoter-TSS (NM_001013785)	-191	NM_001013785	432720	Mm.22832	NM_001013785	ENSMUSG00000071551	Akr1c19	1810010N06Rik	aldo-keto reductase family 1, member C19	protein-coding
diff_RLAGL_Vector_cond1_4054	chr16	57754673	57754900	+	5.12780	NA	promoter-TSS (NM_007739)	promoter-TSS (NM_007739)	-49	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_9382	chr8	13451789	13452142	+	5.12550	NA	intron (NM_001143671, intron 4 of 8)	intron (NM_001143671, intron 4 of 8)	16506	NM_001143671	272465	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding
diff_RLAGL_Vector_cond1_8704	chr6	137734810	137735193	+	5.12522	NA	promoter-TSS (NM_011499)	promoter-TSS (NM_011499)	-81	NM_011499	20901	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding
diff_RLAGL_Vector_cond1_11	chr1	5619202	5619681	+	5.12497	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	30948	NM_011011	18387	Mm.7977	NM_011011	ENSMUSG00000025905	Oprk1	K-OR-1|KOR|KOR-1|MSL-1|Oprk2|R21	opioid receptor, kappa 1	protein-coding
diff_RLAGL_Vector_cond1_10500	chrX	96976030	96976259	+	5.12380	NA	Intergenic	MTD|LTR|ERVL-MaLR	-96452	NM_001033361	245526	Mm.336164	NM_001033361	ENSMUSG00000031212	Pgr15l	-	G protein-coupled receptor 15-like	protein-coding
diff_RLAGL_Vector_cond1_8053	chr5	137778679	137778892	+	5.12316	NA	promoter-TSS (NM_027242)	promoter-TSS (NM_027242)	-133	NM_027242	69871	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding
diff_RLAGL_Vector_cond1_8159	chr6	8209018	8209412	+	5.12211	NA	promoter-TSS (NM_145374)	promoter-TSS (NM_145374)	-12	NM_145374	252875	Mm.257151	NM_145374	ENSMUSG00000042447	Mios	C81488	missing oocyte, meiosis regulator, homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1923	chr11	108920276	108920592	+	5.12187	NA	promoter-TSS (NM_015732)	promoter-TSS (NM_015732)	85	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin2	protein-coding
diff_RLAGL_Vector_cond1_7766	chr5	67864546	67864854	+	5.12145	NA	Intergenic	Intergenic	-17269	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding
diff_RLAGL_Vector_cond1_3624	chr15	60824787	60825124	+	5.12132	NA	5' UTR (NM_001162926, exon 1 of 2)	5' UTR (NM_001162926, exon 1 of 2)	125	NM_001162926	399603	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding
diff_RLAGL_Vector_cond1_5577	chr2	79603430	79603725	+	5.12070	NA	Intergenic	Intergenic	-31848	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding
diff_RLAGL_Vector_cond1_9904	chr9	8042755	8043031	+	5.11934	NA	promoter-TSS (NM_199017)	promoter-TSS (NM_199017)	-70	NM_199017	234912	Mm.172430	NM_199017	ENSMUSG00000053070	9230110C19Rik	-	RIKEN cDNA 9230110C19 gene	protein-coding
diff_RLAGL_Vector_cond1_4446	chr17	46650353	46650619	+	5.11929	NA	TTS (NM_001316742)	TTS (NM_001316742)	148	NM_025611	66515	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding
diff_RLAGL_Vector_cond1_10542	chrX	133646167	133646405	+	5.11844	NA	intron (NM_001105245, intron 3 of 5)	MamRep434|DNA|TcMar-Tigger	42707	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding
diff_RLAGL_Vector_cond1_4835	chr18	39236741	39237004	+	5.11835	NA	intron (NM_175164, intron 14 of 22)	intron (NM_175164, intron 14 of 22)	243727	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding
diff_RLAGL_Vector_cond1_4778	chr18	20782538	20782760	+	5.11827	NA	Intergenic	Intergenic	-36245	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding
diff_RLAGL_Vector_cond1_7459	chr4	150748190	150748523	+	5.11790	NA	Intergenic	Intergenic	-96182	NM_173774	242773	Mm.29280	NM_173774		Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding
diff_RLAGL_Vector_cond1_2810	chr13	73290198	73290648	+	5.11780	NA	Intergenic	Intergenic	29926	NM_018885	50916	Mm.103784	NM_018885	ENSMUSG00000021604	Irx4	-	Iroquois related homeobox 4 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9544	chr8	54529498	54529768	+	5.11742	NA	intron (NM_029701, intron 1 of 4)	CpG	365	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8491	chr6	94699985	94700340	+	5.11642	NA	promoter-TSS (NM_008377)	promoter-TSS (NM_008377)	-17	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding
diff_RLAGL_Vector_cond1_5792	chr2	132247540	132247815	+	5.11605	NA	5' UTR (NM_027478, exon 1 of 4)	5' UTR (NM_027478, exon 1 of 4)	111	NM_001141971	70612	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding
diff_RLAGL_Vector_cond1_5039	chr18	88971491	88972150	+	5.11584	NA	promoter-TSS (NR_105777)	promoter-TSS (NR_105777)	30	NM_175542	246102	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding
diff_RLAGL_Vector_cond1_4254	chr17	12132834	12133260	+	5.11555	NA	intron (NM_026644, intron 1 of 8)	ORR1B1|LTR|ERVL-MaLR	13763	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding
diff_RLAGL_Vector_cond1_3045	chr14	23437630	23437833	+	5.11539	NA	intron (NM_001253367, intron 17 of 28)	MIR|SINE|MIR	-343160	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA
diff_RLAGL_Vector_cond1_7618	chr5	32441235	32441541	+	5.11505	NA	Intergenic	Intergenic	-17582	NM_172707	19046	Mm.241931	NM_172707		Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding
diff_RLAGL_Vector_cond1_3790	chr15	95790649	95790896	+	5.11382	NA	promoter-TSS (NM_175344)	promoter-TSS (NM_175344)	-71	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding
diff_RLAGL_Vector_cond1_4548	chr17	66076762	66077125	+	5.11350	NA	5' UTR (NM_001025572, exon 1 of 13)	5' UTR (NM_001025572, exon 1 of 13)	103	NM_001025572	106585	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding
diff_RLAGL_Vector_cond1_9174	chr7	105736541	105736800	+	5.11311	NA	promoter-TSS (NM_010562)	promoter-TSS (NM_010562)	-55	NM_010562	16202	Mm.274846	NM_010562	ENSMUSG00000030890	Ilk	AA511515|ESTM24	integrin linked kinase	protein-coding
diff_RLAGL_Vector_cond1_1803	chr11	86961908	86962199	+	5.11286	NA	intron (NM_001005341, intron 2 of 4)	L2b|LINE|L2	31709	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_10608	chrX	163908933	163909183	+	5.11282	NA	promoter-TSS (NM_026887)	promoter-TSS (NM_026887)	41	NM_001290378	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding
diff_RLAGL_Vector_cond1_7924	chr5	112851550	112851814	+	5.11263	NA	intron (NM_028901, intron 12 of 43)	intron (NM_028901, intron 12 of 43)	44680	NM_028901	74376	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding
diff_RLAGL_Vector_cond1_6967	chr4	49179537	49179747	+	5.11201	NA	intron (NM_178756, intron 1 of 7)	intron (NM_178756, intron 1 of 7)	120180	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding
diff_RLAGL_Vector_cond1_3933	chr16	32645415	32645839	+	5.11196	NA	intron (NM_016788, intron 1 of 15)	intron (NM_016788, intron 1 of 15)	984	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding
diff_RLAGL_Vector_cond1_7608	chr5	31290955	31291327	+	5.11188	NA	promoter-TSS (NM_026298)	promoter-TSS (NM_026298)	-27	NM_026298	67661	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding
diff_RLAGL_Vector_cond1_8993	chr7	56010802	56011031	+	5.11177	NA	intron (NM_153578, intron 1 of 4)	B2_Mm2|SINE|B2	8657	NM_153578	233280	Mm.389901	NM_153578		Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding
diff_RLAGL_Vector_cond1_2889	chr13	98534228	98534479	+	5.11121	NA	Intergenic	Intergenic	-99288	NR_045498	70090	Mm.410857	NR_045498	ENSMUSG00000099446	2310005E17Rik	-	RIKEN cDNA 2310005E17 gene	ncRNA
diff_RLAGL_Vector_cond1_8830	chr7	13288693	13288904	+	5.11085	NA	intron (NM_001199310, intron 6 of 28)	intron (NM_001199310, intron 6 of 28)	9533	NM_001083188	16881	Mm.288179	NM_010715	ENSMUSG00000056394	Lig1	AL033288|LigI	ligase I, DNA, ATP-dependent	protein-coding
diff_RLAGL_Vector_cond1_4981	chr18	77869994	77870273	+	5.11013	NA	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-68334	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_4971	chr18	75695282	75695491	+	5.10982	NA	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	2310	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding
diff_RLAGL_Vector_cond1_4624	chr17	79054326	79054566	+	5.10980	NA	intron (NM_001316729, intron 1 of 5)	intron (NM_001316729, intron 1 of 5)	2540	NM_001316729	70536	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding
diff_RLAGL_Vector_cond1_7194	chr4	108780789	108781005	+	5.10971	NA	3' UTR (NM_001254730, exon 4 of 4)	3' UTR (NM_001254730, exon 4 of 4)	52687	NM_027453	70533	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding
diff_RLAGL_Vector_cond1_5353	chr2	25286922	25287205	+	5.10949	NA	Intergenic	Intergenic	-1082	NM_030055	78217	Mm.160057	NM_030055	ENSMUSG00000026963	Tmem210	4930571C24Rik	transmembrane protein 210	protein-coding
diff_RLAGL_Vector_cond1_1201	chr10	84376012	84376307	+	5.10834	NA	intron (NM_001004363, intron 6 of 6)	B4|SINE|B4	64312	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding
diff_RLAGL_Vector_cond1_9924	chr9	14380849	14381123	+	5.10809	NA	5' UTR (NM_028013, exon 1 of 2)	5' UTR (NM_028013, exon 1 of 2)	256	NM_028013	71946	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_6233	chr3	30977128	30977336	+	5.10782	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-7817	NM_153421	241915	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic-like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_271	chr1	74386952	74387265	+	5.10758	NA	Intergenic	Intergenic	-4501	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding
diff_RLAGL_Vector_cond1_1628	chr11	44470542	44470840	+	5.10753	NA	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-143	NM_024475	79560	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding
diff_RLAGL_Vector_cond1_2165	chr12	33147507	33147712	+	5.10636	NA	promoter-TSS (NM_028139)	promoter-TSS (NM_028139)	-23	NR_015602	320046	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA
diff_RLAGL_Vector_cond1_9609	chr8	70792353	70792602	+	5.10627	NA	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-44	NM_199308	546071	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding
diff_RLAGL_Vector_cond1_5651	chr2	101796609	101797085	+	5.10626	NA	intron (NM_001110849, intron 2 of 9)	CpG	860	NM_175181	72446	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding
diff_RLAGL_Vector_cond1_241	chr1	69106047	69106274	+	5.10612	NA	intron (NM_010154, intron 1 of 26)	intron (NM_010154, intron 1 of 26)	1899	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
diff_RLAGL_Vector_cond1_80	chr1	21166279	21166806	+	5.10475	NA	Intergenic	Intergenic	-52033	NM_001290679	75712	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding
diff_RLAGL_Vector_cond1_127	chr1	34851682	34851939	+	5.10368	NA	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	1851	NM_175421	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding
diff_RLAGL_Vector_cond1_5102	chr19	17691758	17692015	+	5.10329	NA	intron (NM_001190483, intron 5 of 37)	intron (NM_001190483, intron 5 of 37)	145746	NM_001163144	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding
diff_RLAGL_Vector_cond1_8881	chr7	27689336	27689684	+	5.10322	NA	intron (NM_001112731, intron 1 of 5)	intron (NM_001112731, intron 1 of 5)	170	NM_001112731	112415	Mm.145362	NM_198417	ENSMUSG00000057093	C030039L03Rik	-	RIKEN cDNA C030039L03 gene	protein-coding
diff_RLAGL_Vector_cond1_8915	chr7	36697955	36698257	+	5.10293	NA	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-12	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding
diff_RLAGL_Vector_cond1_10198	chr9	87021744	87021988	+	5.10241	NA	promoter-TSS (NM_024195)	promoter-TSS (NM_024195)	-163	NM_024195	266690	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding
diff_RLAGL_Vector_cond1_1687	chr11	60927333	60927622	+	5.10061	NA	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	4390	NR_027800	24082	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_2647	chr13	40731477	40731768	+	5.10022	NA	intron (NM_001301674, intron 2 of 7)	CpG	-1165	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding
diff_RLAGL_Vector_cond1_6490	chr3	100359077	100359287	+	5.09907	NA	Intergenic	Intergenic	-67223	NR_040543	73806	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA
diff_RLAGL_Vector_cond1_2461	chr12	112707067	112707321	+	5.09855	NA	Intergenic	Intergenic	-14980	NM_001024602	217882	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding
diff_RLAGL_Vector_cond1_3129	chr14	51089169	51089661	+	5.09840	NA	Intergenic	Intergenic	-1662	NM_001161731	11727	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding
diff_RLAGL_Vector_cond1_1318	chr10	107687463	107687693	+	5.09804	NA	intron (NM_001081432, intron 10 of 44)	intron (NM_001081432, intron 10 of 44)	32449	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding
diff_RLAGL_Vector_cond1_4163	chr16	87700114	87700388	+	5.09761	NA	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	1297	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1	protein-coding
diff_RLAGL_Vector_cond1_7789	chr5	74260417	74260719	+	5.09720	NA	intron (NM_001286437, intron 5 of 7)	intron (NM_001286437, intron 5 of 7)	65242	NM_026878	68939	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding
diff_RLAGL_Vector_cond1_430	chr1	118321572	118321878	+	5.09671	NA	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-118	NM_026472	67949	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding
diff_RLAGL_Vector_cond1_3278	chr14	99099385	99100001	+	5.09669	NA	promoter-TSS (NM_028315)	promoter-TSS (NM_028315)	77	NM_028315	72662	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 mitotic control homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8019	chr5	134007046	134007490	+	5.09656	NA	Intergenic	Intergenic	-92480	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_1851	chr11	96937663	96937909	+	5.09574	NA	TTS (NM_134021)	TTS (NM_134021)	6233	NM_134021	103711	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding
diff_RLAGL_Vector_cond1_1573	chr11	30204399	30204715	+	5.09482	NA	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	-6300	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding
diff_RLAGL_Vector_cond1_9955	chr9	21509704	21510353	+	5.09444	NA	exon (NM_010744, exon 1 of 4)	exon (NM_010744, exon 1 of 4)	158	NM_010744	17083	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane emp24 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7426	chr4	145463859	145464352	+	5.09408	NA	promoter-TSS (NR_002888)	promoter-TSS (NR_002888)	-105	NR_002888	545700	Mm.389595	NR_002888	ENSMUSG00000052912	Smarca5-ps	9230115A19Rik|OTTMUSG00000011029	SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene	pseudo
diff_RLAGL_Vector_cond1_6525	chr3	107931758	107932045	+	5.09406	NA	promoter-TSS (NM_026672)	promoter-TSS (NM_026672)	-156	NM_026672	68312	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding
diff_RLAGL_Vector_cond1_6915	chr4	33892269	33892676	+	5.09351	NA	Intergenic	L5|LINE|RTE-X	-32160	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding
diff_RLAGL_Vector_cond1_8071	chr5	140208666	140208920	+	5.09348	NA	intron (NM_010752, intron 10 of 17)	intron (NM_010752, intron 10 of 17)	112759	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding
diff_RLAGL_Vector_cond1_6590	chr3	127552822	127553364	+	5.09121	NA	promoter-TSS (NM_197997)	promoter-TSS (NM_197997)	256	NM_138593	28036	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding
diff_RLAGL_Vector_cond1_8367	chr6	62264066	62264308	+	5.09052	NA	intron (NM_001164316, intron 10 of 10)	intron (NM_001164316, intron 10 of 10)	-992670	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
diff_RLAGL_Vector_cond1_3804	chr15	98918022	98918444	+	5.08983	NA	promoter-TSS (NM_029098)	promoter-TSS (NM_029098)	-135	NM_029098	74775	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding
diff_RLAGL_Vector_cond1_2424	chr12	107394545	107394819	+	5.08959	NA	Intergenic	Intergenic	340806	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA
diff_RLAGL_Vector_cond1_8712	chr6	139168424	139168846	+	5.08905	NA	Intergenic	Intergenic	153941	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA
diff_RLAGL_Vector_cond1_10503	chrX	99154436	99154715	+	5.08863	NA	Intergenic	MIR|SINE|MIR	18514	NM_010110	13641	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding
diff_RLAGL_Vector_cond1_3009	chr14	14345637	14345946	+	5.08823	NA	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-704	NM_008369	16188	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding
diff_RLAGL_Vector_cond1_9148	chr7	100706133	100706564	+	5.08818	NA	promoter-TSS (NM_178764)	promoter-TSS (NM_178764)	-354	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding
diff_RLAGL_Vector_cond1_212	chr1	63995898	63996135	+	5.08790	NA	Intergenic	Intergenic	-11533	NR_035484	100316708		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA
diff_RLAGL_Vector_cond1_7265	chr4	122995476	122996040	+	5.08754	NA	promoter-TSS (NM_008506)	promoter-TSS (NM_008506)	-173	NM_001303121	16918	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc myelocytomatosis viral oncogene homolog, lung carcinoma derived (avian)	protein-coding
diff_RLAGL_Vector_cond1_3469	chr15	12111184	12111652	+	5.08751	NA	Intergenic	Intergenic	-6433	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding
diff_RLAGL_Vector_cond1_9275	chr7	133637859	133638162	+	5.08722	NA	intron (NM_178115, intron 1 of 24)	CpG	335	NM_178115	214764	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding
diff_RLAGL_Vector_cond1_5549	chr2	71800575	71800807	+	5.08590	NA	intron (NM_001277970, intron 1 of 24)	B2_Mm2|SINE|B2	13752	NM_008397	16403	Mm.225096	NM_008397		Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding
diff_RLAGL_Vector_cond1_6624	chr3	133094350	133094669	+	5.08483	NA	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	2556	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22	integrator complex subunit 12	protein-coding
diff_RLAGL_Vector_cond1_9604	chr8	70439548	70439946	+	5.08455	NA	promoter-TSS (NM_001004062)	promoter-TSS (NM_001004062)	-174	NM_001004062	382056	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding
diff_RLAGL_Vector_cond1_1452	chr11	3332257	3332505	+	5.08449	NA	intron (NM_178149, intron 3 of 5)	CpG-1656	1650	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_6482	chr3	98895352	98895552	+	5.08400	NA	Intergenic	Intergenic	-2222	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding
diff_RLAGL_Vector_cond1_8675	chr6	134103599	134103817	+	5.08371	NA	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	68008	NM_001303102	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding
diff_RLAGL_Vector_cond1_10462	chrX	75844363	75844756	+	5.08356	NA	intron (NM_001166453, intron 1 of 15)	intron (NM_001166453, intron 1 of 15)	-1538	NM_001166454	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding
diff_RLAGL_Vector_cond1_502	chr1	134956025	134956228	+	5.08354	NA	promoter-TSS (NM_001081307)	promoter-TSS (NM_001081307)	-186	NM_001081307	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding
diff_RLAGL_Vector_cond1_9072	chr7	75414379	75414608	+	5.08318	NA	Intergenic	Intergenic	-41041	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding
diff_RLAGL_Vector_cond1_7966	chr5	120844776	120845014	+	5.08316	NA	Intergenic	Intergenic	-2472	NM_145153	243262	Mm.105369	NM_145153	ENSMUSG00000053765	Oas1f	-	2'-5' oligoadenylate synthetase 1F	protein-coding
diff_RLAGL_Vector_cond1_6254	chr3	36942154	36942418	+	5.08200	NA	exon (NM_172679, exon 26 of 86)	exon (NM_172679, exon 26 of 86)	79180	NM_172679	229227	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding
diff_RLAGL_Vector_cond1_9718	chr8	94186520	94186774	+	5.08163	NA	Intergenic	Intergenic	7558	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding
diff_RLAGL_Vector_cond1_8867	chr7	24610691	24611065	+	5.07941	NA	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-450	NM_001102613	232970	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|ENSMUSG00000061511|Gm10102	pleckstrin homology-like domain, family B, member 3	protein-coding
diff_RLAGL_Vector_cond1_5776	chr2	128127455	128127700	+	5.07940	NA	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	2	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding
diff_RLAGL_Vector_cond1_2368	chr12	91552166	91552447	+	5.07871	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	37343	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding
diff_RLAGL_Vector_cond1_3953	chr16	37539591	37540163	+	5.07843	NA	promoter-TSS (NM_028812)	promoter-TSS (NM_028812)	-17	NM_001042499	67657	Mm.28158	NM_026297	ENSMUSG00000022827	Rabl3	4930553C05Rik|AA958834	RAB, member RAS oncogene family-like 3	protein-coding
diff_RLAGL_Vector_cond1_3461	chr15	10690286	10690498	+	5.07788	NA	exon (NM_030690, exon 2 of 18)	exon (NM_030690, exon 2 of 18)	23148	NM_030690	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding
diff_RLAGL_Vector_cond1_9504	chr8	44456274	44456546	+	5.07754	NA	Intergenic	MER5B|DNA|hAT-Charlie	-493798	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2957	chr13	116788552	116788828	+	5.07630	NA	Intergenic	L1MA6|LINE|L1	236826	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding
diff_RLAGL_Vector_cond1_3479	chr15	17007140	17007341	+	5.07613	NA	Intergenic	Intergenic	229139	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
diff_RLAGL_Vector_cond1_4276	chr17	15527090	15527461	+	5.07550	NA	promoter-TSS (NM_008799)	promoter-TSS (NM_008799)	26	NM_008799	18567	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding
diff_RLAGL_Vector_cond1_2509	chr13	3537606	3538007	+	5.07508	NA	promoter-TSS (NM_008112)	promoter-TSS (NM_008112)	-269	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding
diff_RLAGL_Vector_cond1_7278	chr4	124772124	124772386	+	5.07497	NA	intron (NR_126474, intron 7 of 24)	L2a|LINE|L2	28474	NR_030480	735263		NR_030480	ENSMUSG00000076119	Mir698	Mirn698|mir-698|mmu-mir-698	microRNA 698	ncRNA
diff_RLAGL_Vector_cond1_2640	chr13	37427030	37427254	+	5.07438	NA	Intergenic	Intergenic	81797	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1	lymphocyte antigen 86	protein-coding
diff_RLAGL_Vector_cond1_9625	chr8	73353607	73354041	+	5.07408	NA	Intergenic	CpG	-1268	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large	BPFD#36|Gyltl1a|Mbp-1|Mbp1|enr|fg|froggy|mKIAA0609|myd	like-glycosyltransferase	protein-coding
diff_RLAGL_Vector_cond1_4274	chr17	15174689	15174898	+	5.07351	NA	Intergenic	Intergenic	65990	NR_046164	328747	Mm.256835	NR_046164	ENSMUSG00000097624	Gm5091	C330048F19	predicted gene 5091	ncRNA
diff_RLAGL_Vector_cond1_3605	chr15	56696070	56696318	+	5.07304	NA	Intergenic	Intergenic	-1648	NM_008216	15117	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding
diff_RLAGL_Vector_cond1_7429	chr4	147520382	147520632	+	5.07299	NA	Intergenic	Intergenic	-32770	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Gm13154	OTTMUSG00000010673	predicted gene 13154	protein-coding
diff_RLAGL_Vector_cond1_484	chr1	132007897	132008295	+	5.07282	NA	intron (NM_007923, intron 1 of 4)	CpG	491	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_1844	chr11	95666600	95667146	+	5.07142	NA	promoter-TSS (NM_008831)	promoter-TSS (NM_008831)	-84	NM_008831	18673	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding
diff_RLAGL_Vector_cond1_437	chr1	118627773	118628112	+	5.07064	NA	promoter-TSS (NM_023755)	promoter-TSS (NM_023755)	-3	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding
diff_RLAGL_Vector_cond1_4804	chr18	33378397	33378596	+	5.07064	NA	Intergenic	Intergenic	85138	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding
diff_RLAGL_Vector_cond1_4122	chr16	76864455	76864671	+	5.07054	NA	Intergenic	RMER1B|Other|Other	146318	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA
diff_RLAGL_Vector_cond1_4156	chr16	86644985	86645312	+	5.06951	NA	Intergenic	Intergenic	-709037	NM_026366	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
diff_RLAGL_Vector_cond1_7531	chr5	8798227	8798736	+	5.06929	NA	intron (NM_011075, intron 1 of 27)	CpG	334	NM_011075	18669	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding
diff_RLAGL_Vector_cond1_8340	chr6	56568701	56569260	+	5.06923	NA	Intergenic	CpG	135719	NM_025520	66373	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_9380	chr8	12873744	12874093	+	5.06906	NA	Intergenic	Intergenic	-41975	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding
diff_RLAGL_Vector_cond1_4878	chr18	50053407	50053614	+	5.06902	NA	5' UTR (NM_134131, exon 1 of 2)	5' UTR (NM_134131, exon 1 of 2)	228	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2	tumor necrosis factor, alpha-induced protein 8	protein-coding
diff_RLAGL_Vector_cond1_9408	chr8	20557449	20557781	+	5.06855	NA	Intergenic	Intergenic	-57312	NM_001270553	100861668	Mm.491087	NM_001270553		Gm21119	-	predicted gene, 21119	protein-coding
diff_RLAGL_Vector_cond1_9491	chr8	41217875	41218277	+	5.06834	NA	Intergenic	RLTR20B3A_MM|LTR|ERVK	-2920	NM_145594	234199	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding
diff_RLAGL_Vector_cond1_9219	chr7	123377762	123378296	+	5.06781	NA	promoter-TSS (NM_025304)	promoter-TSS (NM_025304)	47	NM_025304	30949	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_350	chr1	90603218	90603535	+	5.06698	NA	promoter-TSS (NM_133805)	promoter-TSS (NM_133805)	-49	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	protein-coding
diff_RLAGL_Vector_cond1_8855	chr7	19628375	19628746	+	5.06677	NA	intron (NM_009046, intron 1 of 10)	intron (NM_009046, intron 1 of 10)	878	NM_001290457	19698	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding
diff_RLAGL_Vector_cond1_7900	chr5	108760021	108760484	+	5.06641	NA	Intergenic	Intergenic	-3590	NR_040691	73295	Mm.416858	NR_040691	ENSMUSG00000101762	1700047L14Rik	-	RIKEN cDNA 1700047L14 gene	ncRNA
diff_RLAGL_Vector_cond1_3694	chr15	75748118	75748644	+	5.06621	NA	promoter-TSS (NM_194350)	promoter-TSS (NM_194350)	-459	NM_194350	378435	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding
diff_RLAGL_Vector_cond1_6584	chr3	126746504	126746781	+	5.06522	NA	intron (NM_001293665, intron 4 of 19)	intron (NM_001293665, intron 4 of 19)	149691	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
diff_RLAGL_Vector_cond1_10563	chrX	140956405	140956949	+	5.06497	NA	promoter-TSS (NM_001164177)	promoter-TSS (NM_001164177)	34	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding
diff_RLAGL_Vector_cond1_2384	chr12	99884328	99884635	+	5.06471	NA	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-34	NM_028354	104884	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding
diff_RLAGL_Vector_cond1_1128	chr10	75212194	75212636	+	5.06431	NA	promoter-TSS (NM_001145826)	promoter-TSS (NM_001145826)	25	NM_001145826	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding
diff_RLAGL_Vector_cond1_3494	chr15	25976016	25976323	+	5.06359	NA	Intergenic	Intergenic	-8197	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding
diff_RLAGL_Vector_cond1_7245	chr4	118123040	118123394	+	5.06344	NA	intron (NM_001285521, intron 1 of 10)	intron (NM_001285521, intron 1 of 10)	11729	NM_009176	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding
diff_RLAGL_Vector_cond1_4350	chr17	28232674	28232925	+	5.06296	NA	promoter-TSS (NM_011145)	promoter-TSS (NM_011145)	45	NM_011145	19015	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding
diff_RLAGL_Vector_cond1_10111	chr9	60794304	60794565	+	5.06118	NA	promoter-TSS (NM_028283)	promoter-TSS (NM_028283)	-114	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
diff_RLAGL_Vector_cond1_6255	chr3	37312411	37312622	+	5.06110	NA	promoter-TSS (NM_001255992)	promoter-TSS (NM_001255992)	-38	NM_001255992	241950	Mm.32171	NM_001008502	ENSMUSG00000051444	Bbs12	Gm1805|Gm407|Gm721	Bardet-Biedl syndrome 12 (human)	protein-coding
diff_RLAGL_Vector_cond1_7003	chr4	58722778	58723127	+	5.06090	NA	Intergenic	Intergenic	62768	NM_146920	258922	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding
diff_RLAGL_Vector_cond1_6284	chr3	50906034	50906290	+	5.06084	NA	Intergenic	Intergenic	-318285	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding
diff_RLAGL_Vector_cond1_1350	chr10	115311306	115311620	+	5.06040	NA	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	4128	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_4389	chr17	34576677	34576905	+	5.05962	NA	exon (NM_010929, exon 16 of 30)	exon (NM_010929, exon 16 of 30)	12496	NM_010929	18132	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding
diff_RLAGL_Vector_cond1_5696	chr2	110192324	110192645	+	5.05905	NA	Intergenic	AmnSINE1|SINE|Deu	113241	NM_130452	170442	Mm.27335	NM_130452		Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding
diff_RLAGL_Vector_cond1_5135	chr19	29475251	29475491	+	5.05836	NA	Intergenic	Intergenic	46616	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA
diff_RLAGL_Vector_cond1_2129	chr12	25216786	25217065	+	5.05804	NA	Intergenic	Intergenic	87751	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA
diff_RLAGL_Vector_cond1_8154	chr6	6955771	6956077	+	5.05774	NA	promoter-TSS (NM_001077713)	promoter-TSS (NM_001077713)	-94	NM_001077713	71238	Mm.389086	NM_001077713		Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding
diff_RLAGL_Vector_cond1_9960	chr9	22050530	22050734	+	5.05701	NA	intron (NM_010487, intron 1 of 6)	CpG	1391	NM_010487	15571	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	protein-coding
diff_RLAGL_Vector_cond1_1018	chr10	41810272	41810514	+	5.05660	NA	promoter-TSS (NM_026643)	promoter-TSS (NM_026643)	-181	NM_001162908	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding
diff_RLAGL_Vector_cond1_5063	chr19	6306130	6306408	+	5.05535	NA	promoter-TSS (NM_001033342)	promoter-TSS (NM_001033342)	-188	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding
diff_RLAGL_Vector_cond1_1674	chr11	59163225	59163669	+	5.05509	NA	exon (NM_001270791, exon 1 of 2)	exon (NM_001270791, exon 1 of 2)	298	NM_173785	216792	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10428	chrX	48513437	48513737	+	5.05489	NA	promoter-TSS (NM_012019)	promoter-TSS (NM_012019)	-24	NM_012019	26926	Mm.240434	NM_012019	ENSMUSG00000036932	Aifm1	AIF|AIFsh2|Hq|Pdcd8	apoptosis-inducing factor, mitochondrion-associated 1	protein-coding
diff_RLAGL_Vector_cond1_9428	chr8	25016713	25016957	+	5.05478	NA	promoter-TSS (NM_007404)	promoter-TSS (NM_007404)	87	NM_001270996	11502	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding
diff_RLAGL_Vector_cond1_94	chr1	24005578	24005801	+	5.05344	NA	promoter-TSS (NM_026503)	promoter-TSS (NM_026503)	-49	NM_026503	68002	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding
diff_RLAGL_Vector_cond1_2897	chr13	101753565	101753853	+	5.05294	NA	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	14508	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding
diff_RLAGL_Vector_cond1_6675	chr3	145195614	145195877	+	5.05056	NA	Intergenic	MIR|SINE|MIR	77145	NM_025714	52184	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding
diff_RLAGL_Vector_cond1_10038	chr9	41746636	41746902	+	5.04979	NA	Intergenic	Intergenic	164843	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA
diff_RLAGL_Vector_cond1_5452	chr2	49619261	49619569	+	5.04961	NA	5' UTR (NM_008449, exon 1 of 26)	5' UTR (NM_008449, exon 1 of 26)	101	NM_008449	16574	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding
diff_RLAGL_Vector_cond1_3845	chr16	4549219	4549601	+	5.04945	NA	exon (NM_031182, exon 5 of 7)	exon (NM_031182, exon 5 of 7)	10310	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding
diff_RLAGL_Vector_cond1_6354	chr3	63837865	63838073	+	5.04892	NA	intron (NM_183191, intron 1 of 22)	intron (NM_183191, intron 1 of 22)	13022	NM_001177732	269437	Mm.316391	NM_183191	ENSMUSG00000036834	Plch1	BC042549|PLC-eta-1|PLCeta1|Plcl3	phospholipase C, eta 1	protein-coding
diff_RLAGL_Vector_cond1_4439	chr17	45873122	45873469	+	5.04871	NA	Intergenic	Intergenic	-139451	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding
diff_RLAGL_Vector_cond1_10099	chr9	59036067	59036372	+	5.04810	NA	5' UTR (NM_001042752, exon 1 of 28)	5' UTR (NM_001042752, exon 1 of 28)	222	NM_001042752	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding
diff_RLAGL_Vector_cond1_10240	chr9	96437957	96438221	+	5.04750	NA	Intergenic	Intergenic	40586	NM_011279	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding
diff_RLAGL_Vector_cond1_4892	chr18	56925428	56925927	+	5.04713	NA	promoter-TSS (NM_177115)	promoter-TSS (NM_177115)	-129	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding
diff_RLAGL_Vector_cond1_9989	chr9	30855614	30855942	+	5.04663	NA	Intergenic	Intergenic	66674	NM_001024139	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding
diff_RLAGL_Vector_cond1_6287	chr3	51358625	51358956	+	5.04648	NA	Intergenic	CpG	-18146	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding
diff_RLAGL_Vector_cond1_5363	chr2	26525746	26525994	+	5.04502	NA	Intergenic	Intergenic	21943	NR_132655	102639736		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA
diff_RLAGL_Vector_cond1_1117	chr10	71291305	71291650	+	5.04483	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6215	NM_145420	216080	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding
diff_RLAGL_Vector_cond1_1138	chr10	77566757	77566967	+	5.04309	NA	Intergenic	Intergenic	-14905	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_5662	chr2	103285631	103285860	+	5.04266	NA	intron (NM_007914, intron 1 of 8)	intron (NM_007914, intron 1 of 8)	17451	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding
diff_RLAGL_Vector_cond1_8017	chr5	133576703	133576907	+	5.04252	NA	Intergenic	Intergenic	-522943	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_8142	chr6	5297311	5297528	+	5.04241	NA	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	954	NM_183308	330260	Mm.126984	NM_183308		Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding
diff_RLAGL_Vector_cond1_4941	chr18	69593213	69593670	+	5.04210	NA	intron (NM_001083967, intron 8 of 19)	intron (NM_001083967, intron 8 of 19)	247720	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
diff_RLAGL_Vector_cond1_1054	chr10	54075514	54075979	+	5.04180	NA	promoter-TSS (NM_008548)	promoter-TSS (NM_008548)	50	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding
diff_RLAGL_Vector_cond1_9137	chr7	97081498	97082060	+	5.04092	NA	promoter-TSS (NM_010248)	promoter-TSS (NM_010248)	28	NM_001162477	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_7045	chr4	72049735	72050072	+	5.04008	NA	Intergenic	Intergenic	150990	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
diff_RLAGL_Vector_cond1_3419	chr15	4167975	4168187	+	5.03931	NA	Intergenic	RMER15|LTR|ERVL	-140675	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA
diff_RLAGL_Vector_cond1_8972	chr7	48750245	48750623	+	5.03892	NA	Intergenic	Intergenic	-38569	NM_028031	243983	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding
diff_RLAGL_Vector_cond1_6830	chr4	12766674	12767111	+	5.03889	NA	Intergenic	MLTR11A|LTR|ERVK	-139945	NM_173746	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
diff_RLAGL_Vector_cond1_10195	chr9	84977562	84977880	+	5.03858	NA	Intergenic	Intergenic	203323	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA
diff_RLAGL_Vector_cond1_1262	chr10	95146465	95146878	+	5.03795	NA	promoter-TSS (NR_131146)	promoter-TSS (NR_131146)	-846	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA
diff_RLAGL_Vector_cond1_8694	chr6	136525672	136525990	+	5.03780	NA	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	6980	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_3580	chr15	51775390	51776039	+	5.03770	NA	Intergenic	Intergenic	89747	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
diff_RLAGL_Vector_cond1_4510	chr17	56764708	56764924	+	5.03766	NA	promoter-TSS (NM_144858)	promoter-TSS (NM_144858)	65	NM_144858	224907	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10618	chrX	169036624	169036854	+	5.03722	NA	non-coding (NR_109847, exon 1 of 15)	non-coding (NR_109847, exon 1 of 15)	128	NR_109847	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding
diff_RLAGL_Vector_cond1_2915	chr13	107942563	107943024	+	5.03705	NA	Intergenic	Intergenic	-52729	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding
diff_RLAGL_Vector_cond1_7978	chr5	124352222	124352546	+	5.03696	NA	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	2244	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_5383	chr2	31259019	31259379	+	5.03671	NA	intron (NM_019681, intron 1 of 7)	intron (NM_019681, intron 1 of 7)	13276	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding
diff_RLAGL_Vector_cond1_4871	chr18	47443848	47444190	+	5.03595	NA	Intergenic	L2a|LINE|L2	-8649	NR_033453	77668	Mm.98433	NR_033453		9130209A04Rik	-	RIKEN cDNA 9130209A04 gene	ncRNA
diff_RLAGL_Vector_cond1_5669	chr2	105016965	105017438	+	5.03579	NA	promoter-TSS (NM_145380)	promoter-TSS (NM_145380)	-174	NM_145380	98221	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding
diff_RLAGL_Vector_cond1_5078	chr19	10198873	10199084	+	5.03564	NA	TTS (NM_007999)	TTS (NM_007999)	4965	NM_007999	14156	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding
diff_RLAGL_Vector_cond1_9012	chr7	63925647	63925933	+	5.03524	NA	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	8933	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding
diff_RLAGL_Vector_cond1_5140	chr19	32104274	32104512	+	5.03425	NA	Intergenic	Intergenic	-1253	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding
diff_RLAGL_Vector_cond1_1504	chr11	11808767	11809172	+	5.03377	NA	promoter-TSS (NM_021891)	promoter-TSS (NM_021891)	-7	NM_001163359	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding
diff_RLAGL_Vector_cond1_4100	chr16	70224075	70224348	+	5.03335	NA	Intergenic	RMER17A|LTR|ERVK	-89738	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding
diff_RLAGL_Vector_cond1_562	chr1	149922369	149922574	+	5.03275	NA	promoter-TSS (NM_001305632)	promoter-TSS (NM_001305632)	-32	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
diff_RLAGL_Vector_cond1_3617	chr15	59647998	59648221	+	5.03247	NA	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-545	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5027	chr18	86557887	86558123	+	5.03129	NA	Intergenic	Intergenic	-153105	NM_001302356	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding
diff_RLAGL_Vector_cond1_5298	chr2	14932892	14933244	+	5.03109	NA	intron (NM_001309519, intron 2 of 12)	intron (NM_001309519, intron 2 of 12)	59412	NM_001309519	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding
diff_RLAGL_Vector_cond1_2359	chr12	90306275	90306519	+	5.03035	NA	intron (NM_001252074, intron 6 of 6)	intron (NM_001252074, intron 6 of 6)	432041	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding
diff_RLAGL_Vector_cond1_2519	chr13	4606821	4607024	+	5.02978	NA	intron (NM_018859, intron 2 of 9)	intron (NM_018859, intron 2 of 9)	2242	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding
diff_RLAGL_Vector_cond1_8974	chr7	48877902	48878240	+	5.02910	NA	exon (NM_001013368, exon 4 of 13)	exon (NM_001013368, exon 4 of 13)	2970	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding
diff_RLAGL_Vector_cond1_3242	chr14	80215995	80216249	+	5.02865	NA	Intergenic	Intergenic	215820	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
diff_RLAGL_Vector_cond1_9067	chr7	74554185	74554386	+	5.02864	NA	intron (NM_001038643, intron 1 of 10)	CpG	495	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding
diff_RLAGL_Vector_cond1_396	chr1	105092976	105093417	+	5.02852	NA	Intergenic	Intergenic	263514	NM_178779	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding
diff_RLAGL_Vector_cond1_6879	chr4	23621184	23621596	+	5.02815	NA	Intergenic	MLTR18D_MM|LTR|ERVK	-875072	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
diff_RLAGL_Vector_cond1_5897	chr2	147178582	147178809	+	5.02798	NA	intron (NM_001077632, intron 2 of 2)	intron (NM_001077632, intron 2 of 2)	-5388	NR_030769	100313531	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS|OTTMUSG00000015691	NK2 homeobox 2, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_4218	chr16	96946817	96947032	+	5.02664	NA	intron (NM_031174, intron 3 of 32)	intron (NM_031174, intron 3 of 32)	223811	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_4648	chr17	84188289	84188892	+	5.02620	NA	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-643	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding
diff_RLAGL_Vector_cond1_3409	chr15	3583083	3583621	+	5.02606	NA	promoter-TSS (NM_001048178)	promoter-TSS (NM_001048178)	0	NM_010284	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding
diff_RLAGL_Vector_cond1_5764	chr2	124928642	124928967	+	5.02598	NA	Intergenic	Intergenic	-139323	NM_175034	317750	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding
diff_RLAGL_Vector_cond1_4834	chr18	39169435	39169683	+	5.02476	NA	intron (NM_175164, intron 11 of 22)	intron (NM_175164, intron 11 of 22)	176414	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding
diff_RLAGL_Vector_cond1_7632	chr5	34573725	34573974	+	5.02466	NA	promoter-TSS (NR_106111)	promoter-TSS (NR_106111)	135	NM_001102444	11518	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding
diff_RLAGL_Vector_cond1_6231	chr3	30592493	30592873	+	5.02439	NA	Intergenic	ID_B1|SINE|B4	7187	NM_029690	76652	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding
diff_RLAGL_Vector_cond1_1881	chr11	100850251	100850604	+	5.02431	NA	5' UTR (NM_001113563, exon 1 of 19)	5' UTR (NM_001113563, exon 1 of 19)	158	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding
diff_RLAGL_Vector_cond1_7681	chr5	43997792	43997991	+	5.02387	NA	intron (NM_001163584, intron 22 of 23)	intron (NM_001163584, intron 22 of 23)	-16092	NM_001271616	14181	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_8277	chr6	40431319	40431535	+	5.02296	NA	intron (NM_175528, intron 1 of 7)	intron (NM_175528, intron 1 of 7)	4706	NM_175528	243780	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding
diff_RLAGL_Vector_cond1_1618	chr11	42941647	42941890	+	5.02245	NA	Intergenic	Intergenic	-208109	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding
diff_RLAGL_Vector_cond1_8301	chr6	46918904	46919315	+	5.02232	NA	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-325287	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_7282	chr4	125127310	125128102	+	5.02164	NA	intron (NM_153159, intron 1 of 5)	CpG	175	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|Mcpip1	zinc finger CCCH type containing 12A	protein-coding
diff_RLAGL_Vector_cond1_561	chr1	148443213	148443456	+	5.02093	NA	Intergenic	RLTR21|LTR|ERVK	1479105	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding
diff_RLAGL_Vector_cond1_10173	chr9	79718470	79718734	+	5.02029	NA	5' UTR (NM_001290308, exon 1 of 66)	5' UTR (NM_001290308, exon 1 of 66)	120	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_3692	chr15	75019654	75019882	+	5.02004	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-21737	NM_001271416	110454	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding
diff_RLAGL_Vector_cond1_9774	chr8	111521849	111522172	+	5.01885	NA	promoter-TSS (NM_001170743)	promoter-TSS (NM_001170743)	97	NM_001170743	319481	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding
diff_RLAGL_Vector_cond1_6824	chr4	11847895	11848154	+	5.01809	NA	Intergenic	Intergenic	89867	NM_019753	12557	Mm.33402	NM_019753	ENSMUSG00000028217	Cdh17	HPT-1|HPT-1/LI	cadherin 17	protein-coding
diff_RLAGL_Vector_cond1_8136	chr6	4514608	4514949	+	5.01723	NA	intron (NM_007743, intron 6 of 51)	intron (NM_007743, intron 6 of 51)	9081	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding
diff_RLAGL_Vector_cond1_10473	chrX	79516928	79517518	+	5.01705	NA	promoter-TSS (NM_001099307)	promoter-TSS (NM_001099307)	62	NM_001099307	636104	Mm.459420	NM_001099307	ENSMUSG00000073077	Gm7173	EG636104	predicted gene 7173	protein-coding
diff_RLAGL_Vector_cond1_7959	chr5	118948570	118948883	+	5.01697	NA	Intergenic	Intergenic	-3613	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA
diff_RLAGL_Vector_cond1_9473	chr8	36376845	36377136	+	5.01694	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-112201	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding
diff_RLAGL_Vector_cond1_9867	chr8	128424761	128425293	+	5.01600	NA	intron (NM_008737, intron 3 of 16)	intron (NM_008737, intron 3 of 16)	65786	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA
diff_RLAGL_Vector_cond1_3443	chr15	8469023	8469333	+	5.01559	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-24715	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8873	chr7	25790705	25790934	+	5.01489	NA	Intergenic	Intergenic	-2086	NM_001190975	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding
diff_RLAGL_Vector_cond1_7270	chr4	123343537	123343782	+	5.01464	NA	promoter-TSS (NM_001256019)	promoter-TSS (NM_001256019)	-407	NM_007558	12163	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding
diff_RLAGL_Vector_cond1_269	chr1	74284639	74284951	+	5.01380	NA	promoter-TSS (NM_001039509)	promoter-TSS (NM_001039509)	-57	NM_001190444	227290	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding
diff_RLAGL_Vector_cond1_8568	chr6	115315734	115315987	+	5.01362	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-45091	NM_001127330	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding
diff_RLAGL_Vector_cond1_7726	chr5	52360581	52361120	+	5.01340	NA	Intergenic	Intergenic	-2954	NM_011435	20657	Mm.2407	NM_011435		Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding
diff_RLAGL_Vector_cond1_4415	chr17	40806603	40806909	+	5.01334	NA	Intergenic	Intergenic	-4393	NM_011269	19743	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding
diff_RLAGL_Vector_cond1_3413	chr15	3995788	3996118	+	5.01333	NA	promoter-TSS (NM_145930)	promoter-TSS (NM_145930)	-86	NR_045740	328489	Mm.447020	NR_045740	ENSMUSG00000097662	A630020A06	-	uncharacterized A630020A06	ncRNA
diff_RLAGL_Vector_cond1_696	chr1	175672005	175672213	+	5.01290	NA	intron (NM_010098, intron 1 of 3)	intron (NM_010098, intron 1 of 3)	16244	NM_021350	12663	Mm.440490	NM_021350	ENSMUSG00000078185	Chml	AI450814|E030003F13Rik|REP-2|Rep2	choroideremia-like	protein-coding
diff_RLAGL_Vector_cond1_7005	chr4	59548737	59549107	+	5.01240	NA	intron (NM_144904, intron 1 of 14)	CpG	442	NM_144904	230257	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_7063	chr4	75847934	75848241	+	5.01227	NA	Intergenic	RLTR16|LTR|ERVK	-569801	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
diff_RLAGL_Vector_cond1_4388	chr17	34187385	34187708	+	5.01144	NA	promoter-TSS (NM_001161730)	promoter-TSS (NM_001161730)	-10	NM_001161730	21354	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding
diff_RLAGL_Vector_cond1_10193	chr9	84461499	84461944	+	5.01076	NA	Intergenic	Intergenic	-312677	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA
diff_RLAGL_Vector_cond1_5981	chr2	158534100	158534299	+	5.01054	NA	intron (NM_001145015, intron 5 of 14)	intron (NM_001145015, intron 5 of 14)	21403	NM_001145015	545481	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203|OTTMUSG00000015933	Rho GTPase activating protein 40	protein-coding
diff_RLAGL_Vector_cond1_7321	chr4	132974038	132974307	+	5.01025	NA	promoter-TSS (NM_010208)	promoter-TSS (NM_010208)	77	NM_010208	14191	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	protein-coding
diff_RLAGL_Vector_cond1_8069	chr5	139775467	139775884	+	5.00926	NA	promoter-TSS (NM_026748)	promoter-TSS (NM_026748)	3	NM_026748	68510	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding
diff_RLAGL_Vector_cond1_5498	chr2	60703497	60703835	+	5.00884	NA	intron (NM_001159564, intron 1 of 17)	intron (NM_001159564, intron 1 of 17)	18937	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding
diff_RLAGL_Vector_cond1_8192	chr6	17589597	17589822	+	5.00809	NA	Intergenic	Intergenic	-47389	NM_007604	12343	Mm.392504	NM_007604		Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding
diff_RLAGL_Vector_cond1_9901	chr9	7914529	7914785	+	5.00777	NA	Intergenic	Intergenic	-41487	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding
diff_RLAGL_Vector_cond1_6935	chr4	41275447	41275717	+	5.00764	NA	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	-447	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_2701	chr13	58359133	58359346	+	5.00760	NA	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	-4377	NM_175214	75050	Mm.446094	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding
diff_RLAGL_Vector_cond1_9025	chr7	66311155	66311443	+	5.00710	NA	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	70425	NR_106024	102465640		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA
diff_RLAGL_Vector_cond1_4744	chr18	10255369	10255649	+	5.00697	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-69670	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding
diff_RLAGL_Vector_cond1_6202	chr3	21149648	21150072	+	5.00656	NA	Intergenic	Intergenic	-782683	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
diff_RLAGL_Vector_cond1_4773	chr18	20557994	20558242	+	5.00619	NA	promoter-TSS (NM_007883)	promoter-TSS (NM_007883)	2	NM_007883	13511	Mm.345891	NM_007883	ENSMUSG00000044393	Dsg2	AA408168|D18Ertd293e	desmoglein 2	protein-coding
diff_RLAGL_Vector_cond1_9653	chr8	79638977	79639355	+	5.00604	NA	promoter-TSS (NM_001081164)	promoter-TSS (NM_001081164)	-510	NM_001256033	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_5604	chr2	85030012	85030245	+	5.00494	NA	intron (NM_145526, intron 1 of 11)	intron (NM_145526, intron 1 of 11)	5706	NM_145526	228139	Mm.440375	NM_145526		P2rx3	4930513E20Rik|P2X3	purinergic receptor P2X, ligand-gated ion channel, 3	protein-coding
diff_RLAGL_Vector_cond1_598	chr1	156938810	156939349	+	5.00341	NA	intron (NM_001159968, intron 1 of 18)	CpG	308	NM_001159966	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
diff_RLAGL_Vector_cond1_7097	chr4	84674964	84675381	+	5.00248	NA	promoter-TSS (NM_172870)	promoter-TSS (NM_172870)	-86	NM_172870	242509	Mm.190774	NM_172870		Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding
diff_RLAGL_Vector_cond1_1021	chr10	42502107	42502423	+	5.00225	NA	5' UTR (NM_017472, exon 1 of 4)	5' UTR (NM_017472, exon 1 of 4)	211	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding
diff_RLAGL_Vector_cond1_8625	chr6	126702249	126702542	+	5.00214	NA	Intergenic	Intergenic	38279	NM_013568	16494	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding
diff_RLAGL_Vector_cond1_7626	chr5	33142794	33143023	+	5.00051	NA	intron (NM_019810, intron 5 of 14)	intron (NM_019810, intron 5 of 14)	38689	NM_019810	20537	Mm.25237	NM_019810	ENSMUSG00000011034	Slc5a1	Sglt1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding
diff_RLAGL_Vector_cond1_5079	chr19	10261467	10261705	+	5.00020	NA	intron (NM_198114, intron 8 of 19)	intron (NM_198114, intron 8 of 19)	-20838	NM_001033481	225908	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding
diff_RLAGL_Vector_cond1_6699	chr3	146946108	146946331	+	5.00009	NA	intron (NM_001302957, intron 18 of 21)	intron (NM_001302957, intron 18 of 21)	93852	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding
diff_RLAGL_Vector_cond1_6188	chr3	19187989	19188244	+	4.99990	NA	promoter-TSS (NR_045575)	promoter-TSS (NR_045575)	-105	NR_045575	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding
diff_RLAGL_Vector_cond1_10493	chrX	95658397	95658601	+	4.99897	NA	promoter-TSS (NM_001003916)	promoter-TSS (NM_001003916)	10	NM_001289697	245522	Mm.336158	NM_001003916	ENSMUSG00000035062	Zc4h2	Gm372|mKIAA1166	zinc finger, C4H2 domain containing	protein-coding
diff_RLAGL_Vector_cond1_5751	chr2	122081786	122082075	+	4.99860	NA	intron (NM_145531, intron 19 of 39)	intron (NM_145531, intron 19 of 39)	36456	NM_145531	214585	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	spastic paraplegia 11	protein-coding
diff_RLAGL_Vector_cond1_5478	chr2	57114729	57115032	+	4.99781	NA	5' UTR (NM_013613, exon 1 of 8)	5' UTR (NM_013613, exon 1 of 8)	158	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding
diff_RLAGL_Vector_cond1_4449	chr17	46752100	46752494	+	4.99725	NA	promoter-TSS (NM_001305988)	promoter-TSS (NM_001305988)	-83	NM_028065	72029	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy 3 homolog (zebrafish)	protein-coding
diff_RLAGL_Vector_cond1_1919	chr11	108251296	108251569	+	4.99671	NA	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	92456	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding
diff_RLAGL_Vector_cond1_4393	chr17	34950326	34950532	+	4.99638	NA	TTS (NR_028527)	TTS (NR_028527)	579	NR_028527	100217427		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA
diff_RLAGL_Vector_cond1_1187	chr10	82083144	82083417	+	4.99596	NA	Intergenic	Intergenic	35153	NM_001024626	408062	Mm.391409	NM_001024626		Zfp873	-	zinc finger protein 873	protein-coding
diff_RLAGL_Vector_cond1_9643	chr8	78478561	78478820	+	4.99554	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	30238	NM_001252089	19656	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding
diff_RLAGL_Vector_cond1_9376	chr8	11040184	11040395	+	4.99472	NA	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-31859	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding
diff_RLAGL_Vector_cond1_4007	chr16	49855174	49855514	+	4.99418	NA	promoter-TSS (NM_010581)	promoter-TSS (NM_010581)	-310	NM_010581	16423	Mm.31752	NM_010581		Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding
diff_RLAGL_Vector_cond1_5083	chr19	10881642	10882083	+	4.99394	NA	promoter-TSS (NM_134142)	promoter-TSS (NM_134142)	-119	NM_134142	68539	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding
diff_RLAGL_Vector_cond1_4515	chr17	56997226	56997589	+	4.99380	NA	promoter-TSS (NM_027372)	promoter-TSS (NM_027372)	68	NM_025538	66400	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB, alkylation repair homolog 7 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_5838	chr2	138193669	138193945	+	4.99358	NA	Intergenic	Intergenic	-62777	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_1984	chr11	117810501	117810716	+	4.99350	NA	intron (NM_009304, intron 1 of 3)	intron (NM_009304, intron 1 of 3)	941	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding
diff_RLAGL_Vector_cond1_1538	chr11	21307175	21307631	+	4.99295	NA	intron (NM_001290628, intron 15 of 22)	intron (NM_001290628, intron 15 of 22)	37272	NR_035454	100316753		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA
diff_RLAGL_Vector_cond1_42	chr1	10039549	10039797	+	4.99185	NA	intron (NM_026493, intron 1 of 29)	intron (NM_026493, intron 1 of 29)	1455	NM_026493	211660	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_2428	chr12	108035243	108035565	+	4.99180	NA	Intergenic	Intergenic	-31990	NM_001286343	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding
diff_RLAGL_Vector_cond1_9649	chr8	79399130	79399672	+	4.99161	NA	promoter-TSS (NM_008539)	promoter-TSS (NM_008539)	67	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding
diff_RLAGL_Vector_cond1_4284	chr17	16951331	16951613	+	4.99081	NA	Intergenic	Intergenic	-112631	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding
diff_RLAGL_Vector_cond1_3013	chr14	14904889	14905222	+	4.99054	NA	intron (NM_001195229, intron 22 of 34)	intron (NM_001195229, intron 22 of 34)	84240	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding
diff_RLAGL_Vector_cond1_121	chr1	33907563	33907783	+	4.98957	NA	promoter-TSS (NM_177235)	promoter-TSS (NM_177235)	-52	NM_177235	320705	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_10218	chr9	92229901	92230154	+	4.98773	NA	Intergenic	Intergenic	-20167	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding
diff_RLAGL_Vector_cond1_3497	chr15	27259964	27260180	+	4.98763	NA	Intergenic	Intergenic	-206605	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding
diff_RLAGL_Vector_cond1_2870	chr13	91223663	91224349	+	4.98637	NA	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	-19	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding
diff_RLAGL_Vector_cond1_326	chr1	86503932	86504139	+	4.98616	NA	Intergenic	CpG	-22701	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding
diff_RLAGL_Vector_cond1_3424	chr15	5406410	5406662	+	4.98598	NA	Intergenic	MERVL_2A-int|LTR|ERVL	-89782	NR_045274	71432	Mm.291087	NR_045274		5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA
diff_RLAGL_Vector_cond1_4259	chr17	12799479	12799684	+	4.98528	NA	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-29875	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding
diff_RLAGL_Vector_cond1_5905	chr2	147974790	147975137	+	4.98382	NA	Intergenic	Intergenic	70501	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding
diff_RLAGL_Vector_cond1_4353	chr17	28350905	28351360	+	4.98374	NA	promoter-TSS (NM_001098226)	promoter-TSS (NM_001098226)	-327	NM_011566	21678	Mm.6655	NM_011566	ENSMUSG00000002249	Tead3	DTEF-1|ETFR-1|TEAD-3|TEF-5|Tcf13r2	TEA domain family member 3	protein-coding
diff_RLAGL_Vector_cond1_8452	chr6	88053176	88053429	+	4.98372	NA	Intergenic	5S|rRNA|rRNA	-8032	NM_001293652	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_5468	chr2	52979220	52979522	+	4.98359	NA	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	121503	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding
diff_RLAGL_Vector_cond1_8286	chr6	42264552	42264947	+	4.98305	NA	promoter-TSS (NM_007610)	promoter-TSS (NM_007610)	-236	NM_007610	12366	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding
diff_RLAGL_Vector_cond1_7304	chr4	129107654	129107880	+	4.98293	NA	intron (NM_133881, intron 1 of 4)	intron (NM_133881, intron 1 of 4)	2219	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding
diff_RLAGL_Vector_cond1_4304	chr17	21532178	21532587	+	4.98251	NA	intron (NR_131123, intron 2 of 2)	CpG	-3157	NM_144515	22710	Mm.296100	NM_144515		Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding
diff_RLAGL_Vector_cond1_6394	chr3	75225359	75225567	+	4.98181	NA	Intergenic	RMER15|LTR|ERVL	44615	NM_026460	67931	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding
diff_RLAGL_Vector_cond1_7441	chr4	148287940	148288304	+	4.98138	NA	promoter-TSS (NM_001083342)	promoter-TSS (NM_001083342)	-157	NM_001083342	242748	Mm.33873	NM_001083342		Ptchd2	G630052C06Rik|RNDEu-2	patched domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_2316	chr12	76533244	76533646	+	4.98124	NA	promoter-TSS (NM_153804)	promoter-TSS (NM_153804)	-115	NM_153804	263406	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding
diff_RLAGL_Vector_cond1_9802	chr8	117280483	117280815	+	4.98095	NA	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	23630	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding
diff_RLAGL_Vector_cond1_5378	chr2	30618932	30619206	+	4.98088	NA	Intergenic	Intergenic	24025	NM_030137	78617	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding
diff_RLAGL_Vector_cond1_6212	chr3	21935563	21936213	+	4.97955	NA	Intergenic	Intergenic	-140764	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_9619	chr8	72160817	72161450	+	4.97950	NA	promoter-TSS (NM_023126)	promoter-TSS (NM_023126)	-67	NM_023126	17274	Mm.162811	NM_023126		Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_5958	chr2	154603512	154604085	+	4.97950	NA	promoter-TSS (NM_021534)	promoter-TSS (NM_021534)	-125	NM_021534	59038	Mm.24673	NM_021534		Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding
diff_RLAGL_Vector_cond1_9019	chr7	65468342	65468573	+	4.97948	NA	Intergenic	ID_B1|SINE|B4	-97213	NM_001163574	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding
diff_RLAGL_Vector_cond1_6268	chr3	41408421	41408728	+	4.97837	NA	Intergenic	Intergenic	84625	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA
diff_RLAGL_Vector_cond1_1458	chr11	4805999	4806328	+	4.97815	NA	intron (NM_001252250, intron 6 of 16)	intron (NM_001252250, intron 6 of 16)	26972	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromatosis 2	protein-coding
diff_RLAGL_Vector_cond1_9842	chr8	122678520	122678840	+	4.97761	NA	promoter-TSS (NM_177289)	promoter-TSS (NM_177289)	-505	NM_177289	12398	Mm.194339	NM_009824		Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding
diff_RLAGL_Vector_cond1_9526	chr8	48109818	48110454	+	4.97746	NA	non-coding (NR_027759, exon 1 of 6)	non-coding (NR_027759, exon 1 of 6)	123	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding
diff_RLAGL_Vector_cond1_7701	chr5	47982835	47983222	+	4.97729	NA	promoter-TSS (NM_001291228)	promoter-TSS (NM_001291228)	-127	NM_178804	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9098	chr7	82648391	82648611	+	4.97644	NA	promoter-TSS (NM_001159672)	promoter-TSS (NM_001159672)	27	NM_177894	330577	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stablizer of axonemal microtubules 2	protein-coding
diff_RLAGL_Vector_cond1_381	chr1	97672921	97673185	+	4.97639	NA	Intergenic	Intergenic	-11035	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding
diff_RLAGL_Vector_cond1_445	chr1	119391321	119391530	+	4.97561	NA	Intergenic	Intergenic	30823	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding
diff_RLAGL_Vector_cond1_8023	chr5	134639268	134639593	+	4.97542	NA	promoter-TSS (NM_033561)	promoter-TSS (NM_033561)	-21	NM_001312867	22384	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding
diff_RLAGL_Vector_cond1_2989	chr14	7952862	7953081	+	4.97524	NA	Intergenic	Intergenic	41211	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding
diff_RLAGL_Vector_cond1_9761	chr8	108519333	108519541	+	4.97433	NA	Intergenic	Intergenic	65240	NR_077224	109215	Mm.65282	NR_077224		Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA
diff_RLAGL_Vector_cond1_4794	chr18	25714699	25715110	+	4.97428	NA	intron (NM_001146292, intron 1 of 12)	intron (NM_001146292, intron 1 of 12)	39079	NM_001146293	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
diff_RLAGL_Vector_cond1_1099	chr10	68435413	68435732	+	4.97426	NA	intron (NM_028491, intron 7 of 7)	intron (NM_028491, intron 7 of 7)	106303	NM_028491	73287	Mm.141830	NM_028491	ENSMUSG00000019945	1700040L02Rik	-	RIKEN cDNA 1700040L02 gene	protein-coding
diff_RLAGL_Vector_cond1_8513	chr6	100011671	100011946	+	4.97374	NA	Intergenic	Intergenic	275550	NM_019743	56353	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding
diff_RLAGL_Vector_cond1_1272	chr10	97220245	97220626	+	4.97306	NA	Intergenic	Intergenic	184667	NR_045358	75301	Mm.108650	NR_045358		4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA
diff_RLAGL_Vector_cond1_7416	chr4	144644359	144644568	+	4.97262	NA	Intergenic	RLTR21|LTR|ERVK	30756	NM_001081248	435815	Mm.439623	NM_001081248	ENSMUSG00000070609	Gm13177	OTTMUSG00000010747	predicted gene 13177	protein-coding
diff_RLAGL_Vector_cond1_7413	chr4	143412306	143412977	+	4.97198	NA	5' UTR (NM_172877, exon 1 of 5)	5' UTR (NM_172877, exon 1 of 5)	215	NM_172877	242736	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding
diff_RLAGL_Vector_cond1_9249	chr7	129664246	129664563	+	4.97198	NA	Intergenic	Intergenic	72541	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding
diff_RLAGL_Vector_cond1_7677	chr5	43519889	43520226	+	4.97081	NA	intron (NM_001135172, intron 1 of 2)	intron (NM_001135172, intron 1 of 2)	4488	NM_001135172	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding
diff_RLAGL_Vector_cond1_2458	chr12	112317299	112317522	+	4.97075	NA	Intergenic	L1M3e|LINE|L1	105788	NR_036459	100504733	Mm.255309	NM_176956		A730018C14Rik	-	RIKEN cDNA A730018C14 gene	ncRNA
diff_RLAGL_Vector_cond1_6549	chr3	116341050	116341546	+	4.97026	NA	intron (NM_001173553, intron 5 of 13)	intron (NM_001173553, intron 5 of 13)	82734	NM_001080818	229776	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding
diff_RLAGL_Vector_cond1_8921	chr7	38227716	38228098	+	4.97025	NA	promoter-TSS (NM_024413)	promoter-TSS (NM_024413)	87	NM_024413	72287	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding
diff_RLAGL_Vector_cond1_1890	chr11	102082398	102082643	+	4.97010	NA	intron (NM_016695, intron 2 of 12)	intron (NM_016695, intron 2 of 12)	5995	NM_016695	50997	Mm.36242	NM_016695	ENSMUSG00000017314	Mpp2	D11Bwg0652e|Dlg2|Dlgh2|Pals4	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding
diff_RLAGL_Vector_cond1_10491	chrX	95433121	95433328	+	4.96971	NA	intron (NM_175179, intron 1 of 1)	intron (NM_175179, intron 1 of 1)	11616	NM_175179	72345	Mm.182867	NM_175179	ENSMUSG00000050332	Amer1	2810002O09Rik|AW492303|Fam123b|Wtx	APC membrane recruitment 1	protein-coding
diff_RLAGL_Vector_cond1_9415	chr8	23311568	23311806	+	4.96950	NA	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-54607	NM_020585	57437	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding
diff_RLAGL_Vector_cond1_1335	chr10	111472976	111473389	+	4.96907	NA	promoter-TSS (NM_015781)	promoter-TSS (NM_015781)	-10	NM_015781	53605	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding
diff_RLAGL_Vector_cond1_10057	chr9	45203962	45204299	+	4.96875	NA	promoter-TSS (NM_145403)	promoter-TSS (NM_145403)	-55	NM_145403	214523	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding
diff_RLAGL_Vector_cond1_9125	chr7	90886979	90887183	+	4.96832	NA	Intergenic	Intergenic	-203705	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1087	chr10	61953951	61954227	+	4.96804	NA	intron (NM_001304757, intron 2 of 37)	intron (NM_001304757, intron 2 of 37)	25019	NM_007731	12817	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_5621	chr2	90745294	90745646	+	4.96755	NA	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	100	NM_018828	55935	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_6561	chr3	119783175	119783493	+	4.96691	NA	promoter-TSS (NM_019550)	promoter-TSS (NM_019550)	54	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_4203	chr16	93102283	93102490	+	4.96672	NA	Intergenic	Intergenic	250803	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA
diff_RLAGL_Vector_cond1_2611	chr13	29034853	29035175	+	4.96357	NA	intron (NR_045073, intron 5 of 5)	intron (NR_045073, intron 5 of 5)	18759	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
diff_RLAGL_Vector_cond1_5292	chr2	14055218	14055420	+	4.96342	NA	intron (NM_001012396, intron 1 of 5)	CpG	716	NM_013935	30963	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding
diff_RLAGL_Vector_cond1_597	chr1	156808410	156808640	+	4.96317	NA	non-coding (NR_027640, exon 20 of 20)	non-coding (NR_027640, exon 20 of 20)	-30498	NM_028333	72713	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding
diff_RLAGL_Vector_cond1_3922	chr16	29579290	29579565	+	4.96315	NA	promoter-TSS (NM_001199177)	promoter-TSS (NM_001199177)	93	NM_133752	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	optic atrophy 1	protein-coding
diff_RLAGL_Vector_cond1_10366	chr9	122104006	122104249	+	4.96310	NA	Intergenic	Intergenic	-13139	NM_001164572	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding
diff_RLAGL_Vector_cond1_10403	chrX	15753630	15754005	+	4.96241	NA	Intergenic	Intergenic	-642328	NR_033171	67395	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo
diff_RLAGL_Vector_cond1_4929	chr18	67312072	67312397	+	4.96228	NA	intron (NM_053261, intron 5 of 7)	intron (NM_053261, intron 5 of 7)	23011	NM_053261	114663	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding
diff_RLAGL_Vector_cond1_5970	chr2	156783474	156783729	+	4.96214	NA	Intergenic	RLTR49|LTR|ERVK	8137	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding
diff_RLAGL_Vector_cond1_6137	chr3	3627249	3627646	+	4.96204	NA	intron (NM_013920, intron 1 of 9)	intron (NM_013920, intron 1 of 9)	119417	NM_013920	30942	Mm.330897	NM_013920		Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding
diff_RLAGL_Vector_cond1_1932	chr11	111096515	111096879	+	4.96159	NA	Intergenic	Intergenic	30533	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
diff_RLAGL_Vector_cond1_7691	chr5	45651414	45651619	+	4.96073	NA	Intergenic	Intergenic	-12015	NM_021416	58227	Mm.266466	NM_021416	ENSMUSG00000015879	Fam184b	9630031F12Rik|AB041544	family with sequence similarity 184, member B	protein-coding
diff_RLAGL_Vector_cond1_2549	chr13	12544265	12544529	+	4.96056	NA	Intergenic	Intergenic	-21486	NM_026184	67475	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_7798	chr5	75377399	75377643	+	4.96034	NA	Intergenic	Intergenic	-197466	NM_001122733	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	kit oncogene	protein-coding
diff_RLAGL_Vector_cond1_8179	chr6	13736014	13736380	+	4.96021	NA	Intergenic	RMER12|LTR|ERVK	-58231	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	B630005N14Rik	AI666701	RIKEN cDNA B630005N14 gene	protein-coding
diff_RLAGL_Vector_cond1_9247	chr7	128979953	128980158	+	4.95979	NA	Intergenic	RMER17C|LTR|ERVK	235185	NM_001029982	207352	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_7414	chr4	144405612	144405841	+	4.95837	NA	intron (NM_029948, intron 1 of 3)	RMER17C-int|LTR|ERVK	2738	NM_029948	77632	Mm.31283	NM_029948	ENSMUSG00000028591	Pramef12	4930569K13Rik|AU023001|C86578	PRAME family member 12	protein-coding
diff_RLAGL_Vector_cond1_829	chr1	194660415	194660678	+	4.95798	NA	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	40717	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding
diff_RLAGL_Vector_cond1_10036	chr9	41228903	41229209	+	4.95795	NA	Intergenic	Intergenic	22901	NR_040392	78500	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA
diff_RLAGL_Vector_cond1_6438	chr3	88422093	88422414	+	4.95629	NA	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	2881	NM_001281795	229517	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding
diff_RLAGL_Vector_cond1_5602	chr2	84961415	84961685	+	4.95592	NA	Intergenic	Intergenic	-18911	NM_008920	19074	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding
diff_RLAGL_Vector_cond1_2592	chr13	23687329	23687571	+	4.95584	NA	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	3251	NM_023422	68024	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding
diff_RLAGL_Vector_cond1_8618	chr6	125089925	125090162	+	4.95575	NA	Intergenic	Intergenic	-6120	NM_145979	107932	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_1604	chr11	35970812	35971036	+	4.95568	NA	intron (NM_170779, intron 1 of 22)	intron (NM_170779, intron 1 of 22)	9165	NM_170779	211652	Mm.31267	NM_170779		Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8895	chr7	30353357	30353565	+	4.95549	NA	Intergenic	(CAGGG)n|Simple_repeat|Simple_repeat	9311	NM_175478	233067	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_3924	chr16	30045675	30046047	+	4.95313	NA	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-6382	NR_045878	71528	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA
diff_RLAGL_Vector_cond1_5356	chr2	25557751	25557990	+	4.95173	NA	promoter-TSS (NM_021519)	promoter-TSS (NM_021519)	-30	NM_021519	59022	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding
diff_RLAGL_Vector_cond1_10117	chr9	62777607	62777807	+	4.95158	NA	intron (NM_176922, intron 28 of 29)	intron (NM_176922, intron 28 of 29)	33941	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_5797	chr2	133480973	133481187	+	4.95078	NA	Intergenic	Intergenic	-71079	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding
diff_RLAGL_Vector_cond1_4936	chr18	68159970	68160399	+	4.95058	NA	intron (NM_172631, intron 3 of 5)	Tigger6a|DNA|TcMar-Tigger	100789	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA
diff_RLAGL_Vector_cond1_8682	chr6	134829950	134830251	+	4.95028	NA	promoter-TSS (NM_177687)	promoter-TSS (NM_177687)	-99	NM_177687	232430	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_6997	chr4	56865252	56865465	+	4.94999	NA	promoter-TSS (NM_018761)	promoter-TSS (NM_018761)	-147	NM_018761	54366	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding
diff_RLAGL_Vector_cond1_3117	chr14	49066321	49066545	+	4.94965	NA	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-62	NM_144535	74385	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding
diff_RLAGL_Vector_cond1_10202	chr9	88274814	88275200	+	4.94875	NA	Intergenic	Intergenic	-52602	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding
diff_RLAGL_Vector_cond1_1519	chr11	16809576	16809842	+	4.94638	NA	intron (NM_207655, intron 1 of 27)	intron (NM_207655, intron 1 of 27)	57506	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding
diff_RLAGL_Vector_cond1_10486	chrX	94366812	94367023	+	4.94634	NA	promoter-TSS (NM_001199337)	promoter-TSS (NM_001199337)	-193	NM_026673	68316	Mm.379156	NM_026673	ENSMUSG00000079508	Apoo	0610008C08Rik|1110019O03Rik	apolipoprotein O	protein-coding
diff_RLAGL_Vector_cond1_1357	chr10	116267438	116267715	+	4.94610	NA	intron (NM_001161837, intron 12 of 12)	intron (NM_001161837, intron 12 of 12)	-33798	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding
diff_RLAGL_Vector_cond1_8569	chr6	115360998	115361284	+	4.94492	NA	promoter-TSS (NM_001308352)	promoter-TSS (NM_001308352)	-3	NM_001308352	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding
diff_RLAGL_Vector_cond1_8419	chr6	81965475	81965727	+	4.94468	NA	intron (NM_026490, intron 1 of 4)	CpG	348	NM_026490	56284	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding
diff_RLAGL_Vector_cond1_9830	chr8	121107716	121107922	+	4.94455	NA	intron (NM_001166482, intron 1 of 8)	intron (NM_001166482, intron 1 of 8)	560	NM_001166482	234814	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding
diff_RLAGL_Vector_cond1_5133	chr19	29251439	29252019	+	4.94447	NA	promoter-TSS (NM_001048177)	promoter-TSS (NM_001048177)	-74	NM_001048177	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding
diff_RLAGL_Vector_cond1_3237	chr14	79587294	79587753	+	4.94427	NA	promoter-TSS (NM_026474)	promoter-TSS (NM_026474)	-168	NM_026474	67955	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_5928	chr2	150798192	150798432	+	4.94402	NA	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	11516	NM_153781	110078	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding
diff_RLAGL_Vector_cond1_8613	chr6	124492778	124493017	+	4.94387	NA	promoter-TSS (NM_181344)	promoter-TSS (NM_181344)	-216	NM_181344	232371	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding
diff_RLAGL_Vector_cond1_747	chr1	182489790	182490266	+	4.94386	NA	exon (NM_009794, exon 6 of 21)	exon (NM_009794, exon 6 of 21)	27455	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding
diff_RLAGL_Vector_cond1_351	chr1	91032637	91032940	+	4.94380	NA	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-20656	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_9620	chr8	72311039	72311379	+	4.94372	NA	Intergenic	Intergenic	-7853	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding
diff_RLAGL_Vector_cond1_6087	chr2	173978475	173978912	+	4.94231	NA	Intergenic	Intergenic	-98358	NM_001102424	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding
diff_RLAGL_Vector_cond1_8667	chr6	133357804	133358039	+	4.94187	NA	Intergenic	Intergenic	65705	NM_027784	232426	Mm.158689	NM_027784	ENSMUSG00000055594	5530400C23Rik	GRP	RIKEN cDNA 5530400C23 gene	protein-coding
diff_RLAGL_Vector_cond1_2295	chr12	71309556	71309947	+	4.94158	NA	promoter-TSS (NM_021532)	promoter-TSS (NM_021532)	-133	NM_021532	59036	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dapper homolog 1, antagonist of beta-catenin (xenopus)	protein-coding
diff_RLAGL_Vector_cond1_3977	chr16	43540170	43540383	+	4.94152	NA	intron (NM_019778, intron 3 of 8)	intron (NM_019778, intron 3 of 8)	-100379	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA
diff_RLAGL_Vector_cond1_4939	chr18	69225023	69225358	+	4.94144	NA	Intergenic	Intergenic	-119302	NM_013685	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
diff_RLAGL_Vector_cond1_6891	chr4	26273818	26274155	+	4.94120	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	72666	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding
diff_RLAGL_Vector_cond1_3827	chr15	101497294	101497540	+	4.94106	NA	Intergenic	Intergenic	-5905	NM_001201323	100126226	Mm.347934	NM_001201323	ENSMUSG00000067613	5430421N21Rik	Krt83	RIKEN cDNA 5430421N21 gene	protein-coding
diff_RLAGL_Vector_cond1_5714	chr2	113848396	113848745	+	4.94077	NA	promoter-TSS (NM_181416)	promoter-TSS (NM_181416)	91	NM_181416	228482	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding
diff_RLAGL_Vector_cond1_9583	chr8	64791543	64791764	+	4.94022	NA	intron (NM_178633, intron 4 of 14)	B1_Mur1|SINE|Alu	-58075	NM_025436	66234	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding
diff_RLAGL_Vector_cond1_5062	chr19	6264248	6264448	+	4.93897	NA	promoter-TSS (NR_029720)	promoter-TSS (NR_029720)	-295	NR_029830	723957		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA
diff_RLAGL_Vector_cond1_4783	chr18	22344815	22345085	+	4.93896	NA	promoter-TSS (NM_001167777)	promoter-TSS (NM_001167777)	-139	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_278	chr1	75142579	75142935	+	4.93737	NA	promoter-TSS (NM_001305232)	promoter-TSS (NM_001305232)	-29	NM_001305231	227298	Mm.273062	NM_170755	ENSMUSG00000049339	Fam134a	-	family with sequence similarity 134, member A	protein-coding
diff_RLAGL_Vector_cond1_4751	chr18	13972580	13972974	+	4.93633	NA	promoter-TSS (NM_145492)	promoter-TSS (NM_145492)	-44	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
diff_RLAGL_Vector_cond1_523	chr1	138044628	138044851	+	4.93526	NA	Intergenic	Intergenic	78100	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA
diff_RLAGL_Vector_cond1_8959	chr7	45434189	45434693	+	4.93494	NA	promoter-TSS (NM_030678)	promoter-TSS (NM_030678)	23	NM_011304	20174	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding
diff_RLAGL_Vector_cond1_2750	chr13	63951926	63952438	+	4.93474	NA	Intergenic	Intergenic	136848	NM_023507	76251	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding
diff_RLAGL_Vector_cond1_2020	chr11	121110156	121110367	+	4.93422	NA	Intergenic	Intergenic	8416	NM_027622	70956	Mm.158506	NM_027622	ENSMUSG00000039337	Tex19.2	4921530G04Rik|Tex19b	testis expressed gene 19.2	protein-coding
diff_RLAGL_Vector_cond1_5385	chr2	31654186	31654409	+	4.93418	NA	exon (NM_001123362, exon 5 of 5)	exon (NM_001123362, exon 5 of 5)	14260	NM_001123362	381359	Mm.379512	NM_001123362	ENSMUSG00000079466	Prdm12	Gm998	PR domain containing 12	protein-coding
diff_RLAGL_Vector_cond1_7338	chr4	134061484	134061684	+	4.93376	NA	Intergenic	MIRb|SINE|MIR	-6868	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding
diff_RLAGL_Vector_cond1_5069	chr19	7217728	7217938	+	4.93338	NA	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-217	NM_007750	12868	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding
diff_RLAGL_Vector_cond1_3700	chr15	76119035	76119518	+	4.93299	NA	TTS (NM_001142968)	TTS (NM_001142968)	919	NM_144848	223650	Mm.259929	NM_144848		Eppk1	6230424I18Rik|EPIPL|EPIPL1|EPPK	epiplakin 1	protein-coding
diff_RLAGL_Vector_cond1_7440	chr4	148159706	148160273	+	4.93293	NA	promoter-TSS (NM_001161851)	promoter-TSS (NM_001161851)	105	NM_001161852	230903	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding
diff_RLAGL_Vector_cond1_353	chr1	91366267	91366516	+	4.93275	NA	promoter-TSS (NM_173395)	promoter-TSS (NM_173395)	-39	NM_173395	227358	Mm.389157	NM_173395	ENSMUSG00000047443	Fam132b	4832406C22|myonectin	family with sequence similarity 132, member B	protein-coding
diff_RLAGL_Vector_cond1_4390	chr17	34603498	34603992	+	4.93265	NA	promoter-TSS (NM_019403)	promoter-TSS (NM_019403)	-184	NM_019403	54197	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding
diff_RLAGL_Vector_cond1_679	chr1	172697661	172698022	+	4.93263	NA	promoter-TSS (NM_007768)	promoter-TSS (NM_007768)	-215	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding
diff_RLAGL_Vector_cond1_10427	chrX	48284886	48285230	+	4.93259	NA	intron (NR_045916, intron 1 of 3)	intron (NR_045916, intron 1 of 3)	368	NR_045916	100500713	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA
diff_RLAGL_Vector_cond1_9407	chr8	20550438	20550899	+	4.93186	NA	Intergenic	CpG	-64259	NM_001270553	100861668	Mm.491087	NM_001270553		Gm21119	-	predicted gene, 21119	protein-coding
diff_RLAGL_Vector_cond1_3046	chr14	23830481	23830901	+	4.93181	NA	intron (NM_001253367, intron 1 of 28)	intron (NM_001253367, intron 1 of 28)	173514	NM_001253365	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding
diff_RLAGL_Vector_cond1_8833	chr7	14541495	14541903	+	4.93169	NA	intron (NR_045120, intron 12 of 12)	RLTR22_Mus|LTR|ERVK	20472	NM_001244031	627280	Mm.372763	NM_001039146	ENSMUSG00000097425	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding
diff_RLAGL_Vector_cond1_1441	chr10	128696338	128696720	+	4.93160	NA	promoter-TSS (NM_177411)	promoter-TSS (NM_177411)	-261	NM_177411	19344	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_9277	chr7	133805706	133805939	+	4.93158	NA	intron (NM_025850, intron 1 of 10)	intron (NM_025850, intron 1 of 10)	-23037	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding
diff_RLAGL_Vector_cond1_3708	chr15	77306872	77307240	+	4.93147	NA	promoter-TSS (NM_053104)	promoter-TSS (NM_053104)	-3	NM_053104	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding
diff_RLAGL_Vector_cond1_190	chr1	55236984	55237332	+	4.93114	NA	promoter-TSS (NM_175439)	promoter-TSS (NM_175439)	-19	NM_175439	212679	Mm.19223	NM_175439		Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding
diff_RLAGL_Vector_cond1_13	chr1	6441365	6441604	+	4.93060	NA	Intergenic	CpG	-45747	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
diff_RLAGL_Vector_cond1_7793	chr5	74702901	74703115	+	4.93057	NA	promoter-TSS (NM_001159577)	promoter-TSS (NM_001159577)	-105	NM_001159577	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding
diff_RLAGL_Vector_cond1_4457	chr17	47759848	47760092	+	4.93029	NA	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	22039	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding
diff_RLAGL_Vector_cond1_5429	chr2	45509722	45510008	+	4.93024	NA	Intergenic	Intergenic	-186740	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
diff_RLAGL_Vector_cond1_4661	chr17	87265811	87266156	+	4.92978	NA	promoter-TSS (NM_139295)	promoter-TSS (NM_139295)	-36	NM_176808	193813	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding
diff_RLAGL_Vector_cond1_4396	chr17	35047705	35047971	+	4.92969	NA	Intergenic	Intergenic	-1093	NM_001146215	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_1511	chr11	12872486	12872779	+	4.92962	NA	Intergenic	Intergenic	-407672	NM_172496	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
diff_RLAGL_Vector_cond1_2646	chr13	38960772	38961008	+	4.92864	NA	promoter-TSS (NM_001170430)	promoter-TSS (NM_001170430)	-15	NM_001170431	108652	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding
diff_RLAGL_Vector_cond1_2584	chr13	21919166	21919368	+	4.92846	NA	Intergenic	tRNA-Ser-TCY|tRNA|tRNA	-22218	NR_035500	100316716		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA
diff_RLAGL_Vector_cond1_2630	chr13	34212680	34213049	+	4.92830	NA	intron (NM_001033167, intron 4 of 10)	intron (NM_001033167, intron 4 of 10)	49900	NM_001101430	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding
diff_RLAGL_Vector_cond1_546	chr1	144116191	144116558	+	4.92707	NA	Intergenic	Intergenic	60998	NM_153171	246709	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding
diff_RLAGL_Vector_cond1_9480	chr8	39006211	39006424	+	4.92697	NA	intron (NM_030254, intron 1 of 7)	CpG	450	NM_030254	80286	Mm.272722	NM_030254		Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding
diff_RLAGL_Vector_cond1_9049	chr7	72103536	72103899	+	4.92644	NA	intron (NM_001024703, intron 19 of 22)	intron (NM_001024703, intron 19 of 22)	-141699	NR_126483	102640608	Mm.399138	NR_126483		Gm36633	-	predicted gene, 36633	ncRNA
diff_RLAGL_Vector_cond1_1562	chr11	26210337	26210688	+	4.92619	NA	promoter-TSS (NR_027973)	promoter-TSS (NR_027973)	64	NR_027973	70626	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA
diff_RLAGL_Vector_cond1_10278	chr9	106887125	106887354	+	4.92501	NA	promoter-TSS (NM_175402)	promoter-TSS (NM_175402)	-239	NM_175402	109095	Mm.431589	NM_175402		Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding
diff_RLAGL_Vector_cond1_3800	chr15	98424744	98425011	+	4.92470	NA	Intergenic	Intergenic	-12593	NM_146457	258449	Mm.324601	NM_146457	ENSMUSG00000063780	Olfr282	MOR160-2	olfactory receptor 282	protein-coding
diff_RLAGL_Vector_cond1_10098	chr9	58253101	58253439	+	4.92366	NA	non-coding (NR_028146, exon 1 of 8)	non-coding (NR_028146, exon 1 of 8)	106	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding
diff_RLAGL_Vector_cond1_3570	chr15	47694013	47694232	+	4.92336	NA	intron (NM_001081391, intron 45 of 70)	RLTR13B4|LTR|ERVK	1070817	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA
diff_RLAGL_Vector_cond1_915	chr10	19907970	19908386	+	4.92282	NA	promoter-TSS (NM_008822)	promoter-TSS (NM_008822)	-504	NM_001161825	18634	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding
diff_RLAGL_Vector_cond1_5647	chr2	101536929	101537168	+	4.92264	NA	Intergenic	RLTR44A|LTR|ERVK	-87700	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
diff_RLAGL_Vector_cond1_5382	chr2	31245756	31246032	+	4.92260	NA	promoter-TSS (NM_019681)	promoter-TSS (NM_019681)	-29	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding
diff_RLAGL_Vector_cond1_2678	chr13	53316490	53316696	+	4.92191	NA	Intergenic	Intergenic	-30484	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2|mRor2	receptor tyrosine kinase-like orphan receptor 2	protein-coding
diff_RLAGL_Vector_cond1_7390	chr4	141033630	141033870	+	4.92164	NA	intron (NM_172122, intron 19 of 36)	MIRb|SINE|MIR	19911	NM_172122	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding
diff_RLAGL_Vector_cond1_3532	chr15	36820113	36820360	+	4.92122	NA	Intergenic	Intergenic	-23307	NM_001253806	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_9628	chr8	74712749	74712965	+	4.92102	NA	Intergenic	Intergenic	-160317	NM_001294278	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding
diff_RLAGL_Vector_cond1_750	chr1	182785510	182785735	+	4.92097	NA	intron (NM_144796, intron 1 of 7)	intron (NM_144796, intron 1 of 7)	20716	NM_144796	96935	Mm.331052	NM_144796	ENSMUSG00000038576	Susd4	AI848994|E430021N18Rik|N28096	sushi domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_1070	chr10	58813729	58813951	+	4.92085	NA	exon (NM_172788, exon 1 of 10)	exon (NM_172788, exon 1 of 10)	481	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding
diff_RLAGL_Vector_cond1_1546	chr11	23029018	23029366	+	4.92076	NA	Intergenic	Intergenic	15805	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding
diff_RLAGL_Vector_cond1_364	chr1	92934201	92934913	+	4.92052	NA	non-coding (NR_015525, exon 2 of 2)	non-coding (NR_015525, exon 2 of 2)	149	NM_011796	23830	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding
diff_RLAGL_Vector_cond1_5975	chr2	157935946	157936148	+	4.92027	NA	intron (NM_198627, intron 2 of 3)	intron (NM_198627, intron 2 of 3)	21394	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding
diff_RLAGL_Vector_cond1_2884	chr13	97976867	97977121	+	4.91967	NA	intron (NM_012026, intron 16 of 35)	MTD|LTR|ERVL-MaLR	229171	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding
diff_RLAGL_Vector_cond1_3739	chr15	84923171	84923526	+	4.91945	NA	promoter-TSS (NM_016714)	promoter-TSS (NM_016714)	-80	NM_016714	18141	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding
diff_RLAGL_Vector_cond1_7233	chr4	116463961	116464282	+	4.91911	NA	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	60	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding
diff_RLAGL_Vector_cond1_3206	chr14	73107003	73107500	+	4.91908	NA	Intergenic	Intergenic	-35259	NM_134083	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding
diff_RLAGL_Vector_cond1_7120	chr4	89687983	89688203	+	4.91892	NA	promoter-TSS (NM_175647)	promoter-TSS (NM_175647)	-105	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding
diff_RLAGL_Vector_cond1_4759	chr18	16028522	16028854	+	4.91850	NA	Intergenic	Intergenic	-310642	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
diff_RLAGL_Vector_cond1_2163	chr12	32953853	32954093	+	4.91850	NA	promoter-TSS (NM_198710)	promoter-TSS (NM_198710)	28	NM_013635	19027	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding
diff_RLAGL_Vector_cond1_6767	chr3	157717623	157717861	+	4.91672	NA	Intergenic	Intergenic	150850	NM_011196	19218	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding
diff_RLAGL_Vector_cond1_8870	chr7	25268137	25268437	+	4.91535	NA	intron (NM_001302811, intron 1 of 20)	CpG	588	NM_001302811	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2416	chr12	105509751	105510039	+	4.91499	NA	Intergenic	RLTR11A2|LTR|ERVK	-3538	NR_102381	104932	Mm.274150	NR_102381		AU015791	-	expressed sequence AU015791	ncRNA
diff_RLAGL_Vector_cond1_5783	chr2	129911475	129911719	+	4.91472	NA	Intergenic	Intergenic	-100743	NM_009374	21818	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3	transglutaminase 3, E polypeptide	protein-coding
diff_RLAGL_Vector_cond1_4880	chr18	51117680	51117951	+	4.91441	NA	promoter-TSS (NM_001081224)	promoter-TSS (NM_001081224)	-83	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding
diff_RLAGL_Vector_cond1_4463	chr17	48409462	48409679	+	4.91434	NA	promoter-TSS (NM_001289490)	promoter-TSS (NM_001289490)	250	NM_010913	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding
diff_RLAGL_Vector_cond1_346	chr1	89069915	89070225	+	4.91356	NA	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-392	NM_133816	98402	Mm.170983	NM_133816		Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_5443	chr2	48456128	48456364	+	4.91189	NA	Intergenic	Intergenic	-357863	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
diff_RLAGL_Vector_cond1_10183	chr9	82975875	82976112	+	4.91182	NA	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-504	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding
diff_RLAGL_Vector_cond1_5971	chr2	157012614	157012882	+	4.91092	NA	3' UTR (NM_001164663, exon 15 of 15)	3' UTR (NM_001164663, exon 15 of 15)	-5673	NM_025853	66934	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_5254	chr2	6162417	6162687	+	4.90939	NA	Intergenic	MER45A|DNA|hAT-Tip100	29669	NR_033471	100038358	Mm.353975	NR_033470	ENSMUSG00000102887	Gm10857	AU015850|ENSMUSG00000075545	predicted gene 10857	ncRNA
diff_RLAGL_Vector_cond1_10487	chrX	94542171	94542415	+	4.90909	NA	promoter-TSS (NM_019791)	promoter-TSS (NM_019791)	-219	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding
diff_RLAGL_Vector_cond1_1568	chr11	29526192	29526479	+	4.90885	NA	promoter-TSS (NM_001282120)	promoter-TSS (NM_001282120)	-62	NM_001282120	76784	Mm.285429	NM_133767	ENSMUSG00000020459	Mtif2	2310038D14Rik|2410112O06Rik|IF-2(Mt)|IF-2mt|IF2(mt)	mitochondrial translational initiation factor 2	protein-coding
diff_RLAGL_Vector_cond1_8823	chr7	12961714	12962052	+	4.90850	NA	Intergenic	Intergenic	-3981	NM_178732	243834	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding
diff_RLAGL_Vector_cond1_592	chr1	155482164	155482468	+	4.90811	NA	Intergenic	Intergenic	44795	NR_132128	433367	Mm.359304	NR_132128		Gm5532	EG433367	predicted gene 5532	ncRNA
diff_RLAGL_Vector_cond1_9355	chr8	6572256	6572511	+	4.90800	NA	Intergenic	Intergenic	-1467151	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
diff_RLAGL_Vector_cond1_6992	chr4	55493339	55493560	+	4.90774	NA	Intergenic	Intergenic	39026	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding
diff_RLAGL_Vector_cond1_1869	chr11	98775206	98775522	+	4.90691	NA	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	13	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding
diff_RLAGL_Vector_cond1_1916	chr11	106999632	106999847	+	4.90670	NA	promoter-TSS (NM_010655)	promoter-TSS (NM_010655)	-214	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding
diff_RLAGL_Vector_cond1_9886	chr9	5296758	5297108	+	4.90653	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-1584	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding
diff_RLAGL_Vector_cond1_3234	chr14	79451812	79452066	+	4.90624	NA	5' UTR (NM_001034882, exon 1 of 1)	5' UTR (NM_001034882, exon 1 of 1)	104	NM_001034882	432879	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_5255	chr2	6213219	6213564	+	4.90503	NA	promoter-TSS (NM_024208)	promoter-TSS (NM_024208)	-397	NM_024208	67856	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_7484	chr4	154471320	154471650	+	4.90484	NA	intron (NM_001291029, intron 3 of 15)	intron (NM_001291029, intron 3 of 15)	164882	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA
diff_RLAGL_Vector_cond1_4148	chr16	84735150	84735400	+	4.90466	NA	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	27	NM_017404	27393	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding
diff_RLAGL_Vector_cond1_4437	chr17	45726436	45726662	+	4.90460	NA	Intergenic	Intergenic	7295	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding
diff_RLAGL_Vector_cond1_10091	chr9	56417990	56418300	+	4.90415	NA	promoter-TSS (NM_172924)	promoter-TSS (NM_172924)	-95	NM_172924	244895	Mm.490331	NM_172924		Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding
diff_RLAGL_Vector_cond1_1937	chr11	112595305	112595532	+	4.90392	NA	Intergenic	Intergenic	115938	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA
diff_RLAGL_Vector_cond1_8983	chr7	51861636	51862055	+	4.90375	NA	exon (NM_001115087, exon 1 of 1)	exon (NM_001115087, exon 1 of 1)	422	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding
diff_RLAGL_Vector_cond1_2245	chr12	54317156	54317383	+	4.90373	NA	Intergenic	Intergenic	74049	NR_033689	665239	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA
diff_RLAGL_Vector_cond1_5299	chr2	15049146	15049478	+	4.90369	NA	promoter-TSS (NM_028950)	promoter-TSS (NM_028950)	0	NM_028950	74455	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding
diff_RLAGL_Vector_cond1_6419	chr3	82902883	82903238	+	4.90365	NA	intron (NM_023624, intron 1 of 1)	intron (NM_023624, intron 1 of 1)	914	NM_023624	79235	Mm.33921	NM_023624	ENSMUSG00000028003	Lrat	1300010A18Rik|AI449251	lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	protein-coding
diff_RLAGL_Vector_cond1_7810	chr5	81837887	81838130	+	4.90340	NA	Intergenic	Intergenic	816415	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
diff_RLAGL_Vector_cond1_5043	chr18	90579390	90579778	+	4.90280	NA	Intergenic	Intergenic	69430	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_8022	chr5	134550828	134551162	+	4.90222	NA	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	1439	NM_009990	269713	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding
diff_RLAGL_Vector_cond1_6681	chr3	145758658	145758871	+	4.90198	NA	promoter-TSS (NM_026993)	promoter-TSS (NM_026993)	72	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding
diff_RLAGL_Vector_cond1_2008	chr11	120086807	120087094	+	4.90150	NA	promoter-TSS (NM_009734)	promoter-TSS (NM_009734)	-123	NM_009734	12009	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding
diff_RLAGL_Vector_cond1_8358	chr6	59483568	59483921	+	4.90127	NA	Intergenic	Intergenic	-57454	NM_183183	243385	Mm.138080	NM_183183		Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding
diff_RLAGL_Vector_cond1_1839	chr11	94928925	94929190	+	4.90126	NA	Intergenic	Intergenic	-7167	NM_007742	12842	Mm.277735	NM_007742		Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_4186	chr16	89861561	89861854	+	4.90066	NA	intron (NM_001145886, intron 8 of 27)	intron (NM_001145886, intron 8 of 27)	-43355	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding
diff_RLAGL_Vector_cond1_5397	chr2	32847001	32847478	+	4.89939	NA	promoter-TSS (NM_001113569)	promoter-TSS (NM_001113569)	-2	NM_001113569	20910	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9721	chr8	94899240	94899513	+	4.89902	NA	Intergenic	Intergenic	18722	NM_001033533	234582	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding
diff_RLAGL_Vector_cond1_8903	chr7	32297124	32297362	+	4.89890	NA	Intergenic	RLTR24|LTR|ERV1	30002	NM_001281508	668379	Mm.380094	NM_001281508	ENSMUSG00000097982	Scgb2b12	Abpbg12|EG668379|Gm9138	secretoglobin, family 2B, member 12	protein-coding
diff_RLAGL_Vector_cond1_1300	chr10	105575374	105575589	+	4.89863	NA	non-coding (NR_038032, exon 1 of 3)	non-coding (NR_038032, exon 1 of 3)	930	NR_038032	327812	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06|OTTMUSG00000025047	predicted gene 15663	ncRNA
diff_RLAGL_Vector_cond1_737	chr1	180568848	180569118	+	4.89768	NA	promoter-TSS (NM_007415)	promoter-TSS (NM_007415)	8	NM_007415	11545	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding
diff_RLAGL_Vector_cond1_7856	chr5	100908555	100909078	+	4.89715	NA	Intergenic	Intergenic	62587	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding
diff_RLAGL_Vector_cond1_147	chr1	40657094	40657328	+	4.89689	NA	Intergenic	Intergenic	-24501	NM_001033289	226999	Mm.256414	NM_001033289		Slc9a2	2210416H12Rik|4932415O19Rik|AV333884|NHE2	solute carrier family 9 (sodium/hydrogen exchanger), member 2	protein-coding
diff_RLAGL_Vector_cond1_2196	chr12	39950271	39950545	+	4.89612	NA	Intergenic	L1MD2|LINE|L1	86968	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding
diff_RLAGL_Vector_cond1_5887	chr2	145233104	145233470	+	4.89568	NA	Intergenic	Intergenic	-9324	NM_053195	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding
diff_RLAGL_Vector_cond1_6521	chr3	107230632	107230882	+	4.89519	NA	intron (NM_001256174, intron 1 of 2)	intron (NM_001256174, intron 1 of 2)	143	NM_001256174	319929	Mm.30453	NM_001256174		A630076J17Rik	-	RIKEN cDNA A630076J17 gene	protein-coding
diff_RLAGL_Vector_cond1_926	chr10	24490460	24490739	+	4.89501	NA	Intergenic	MTC|LTR|ERVL-MaLR	-104843	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding
diff_RLAGL_Vector_cond1_5690	chr2	109694263	109694464	+	4.89441	NA	promoter-TSS (NM_001316310)	promoter-TSS (NM_001316310)	-46	NM_001285417	12064	Mm.1442	NM_007540	ENSMUSG00000048482	Bdnf	-	brain derived neurotrophic factor	protein-coding
diff_RLAGL_Vector_cond1_940	chr10	26820380	26820653	+	4.89407	NA	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	48004	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
diff_RLAGL_Vector_cond1_1208	chr10	85174716	85174958	+	4.89347	NA	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	10217	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding
diff_RLAGL_Vector_cond1_5769	chr2	125782734	125783015	+	4.89203	NA	promoter-TSS (NM_177608)	promoter-TSS (NM_177608)	-4	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding
diff_RLAGL_Vector_cond1_7794	chr5	74704304	74704778	+	4.89194	NA	Intergenic	Intergenic	-1638	NM_001159577	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding
diff_RLAGL_Vector_cond1_2925	chr13	110211796	110212018	+	4.89185	NA	intron (NM_023852, intron 2 of 4)	intron (NM_023852, intron 2 of 4)	68299	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_4281	chr17	16481827	16482034	+	4.89147	NA	Intergenic	Intergenic	-582173	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding
diff_RLAGL_Vector_cond1_764	chr1	185431530	185431742	+	4.89143	NA	non-coding (NR_038006, exon 2 of 2)	non-coding (NR_038006, exon 2 of 2)	10183	NR_038006	319562	Mm.184335	NM_176943	ENSMUSG00000051295	9630028B13Rik	-	RIKEN cDNA 9630028B13 gene	ncRNA
diff_RLAGL_Vector_cond1_145	chr1	40085768	40086218	+	4.89112	NA	promoter-TSS (NR_037980)	promoter-TSS (NR_037980)	-142	NR_037980	100047133	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA
diff_RLAGL_Vector_cond1_3071	chr14	31336399	31336770	+	4.89085	NA	promoter-TSS (NM_009796)	promoter-TSS (NM_009796)	-140	NM_009796	12339	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding
diff_RLAGL_Vector_cond1_1110	chr10	70598457	70598707	+	4.89043	NA	intron (NM_178621, intron 1 of 4)	intron (NM_178621, intron 1 of 4)	709	NM_178621	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding
diff_RLAGL_Vector_cond1_4427	chr17	43801173	43801387	+	4.88915	NA	promoter-TSS (NM_207649)	promoter-TSS (NM_207649)	-571	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding
diff_RLAGL_Vector_cond1_9239	chr7	127471613	127471849	+	4.88906	NA	5' UTR (NM_145589, exon 1 of 11)	5' UTR (NM_145589, exon 1 of 11)	117	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding
diff_RLAGL_Vector_cond1_9454	chr8	34513538	34513821	+	4.88881	NA	Intergenic	RLTR18|LTR|ERVK	126637	NR_040706	330734	Mm.149998	NR_040706		B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA
diff_RLAGL_Vector_cond1_7953	chr5	117413509	117413813	+	4.88855	NA	promoter-TSS (NM_001312914)	promoter-TSS (NM_001312914)	-341	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding
diff_RLAGL_Vector_cond1_3229	chr14	78536732	78537163	+	4.88795	NA	promoter-TSS (NM_001164503)	promoter-TSS (NM_001164503)	-87	NM_001164503	219181	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding
diff_RLAGL_Vector_cond1_9439	chr8	26871929	26872210	+	4.88762	NA	Intergenic	Intergenic	-47646	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA
diff_RLAGL_Vector_cond1_3105	chr14	45529851	45530111	+	4.88752	NA	promoter-TSS (NM_146054)	promoter-TSS (NM_146054)	84	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7783	chr5	73353607	73353829	+	4.88727	NA	Intergenic	Intergenic	-14771	NM_001310636	433904	Mm.274892	NM_026950	ENSMUSG00000029153	Ociad2	1810027I20Rik	OCIA domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_10121	chr9	63602351	63602677	+	4.88724	NA	promoter-TSS (NM_030068)	promoter-TSS (NM_030068)	-21	NM_001311098	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding
diff_RLAGL_Vector_cond1_7381	chr4	139574366	139574657	+	4.88689	NA	promoter-TSS (NM_001205173)	promoter-TSS (NM_001205173)	-209	NM_001205173	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding
diff_RLAGL_Vector_cond1_9288	chr7	136894302	136894550	+	4.88668	NA	promoter-TSS (NM_008598)	promoter-TSS (NM_008598)	-185	NM_008598	17314	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding
diff_RLAGL_Vector_cond1_4970	chr18	75367030	75367573	+	4.88623	NA	promoter-TSS (NM_001042660)	promoter-TSS (NM_001042660)	-64	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding
diff_RLAGL_Vector_cond1_6600	chr3	129351624	129351844	+	4.88577	NA	Intergenic	Intergenic	-18985	NM_007934	13809	Mm.1193	NM_007934	ENSMUSG00000028024	Enpep	6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51	glutamyl aminopeptidase	protein-coding
diff_RLAGL_Vector_cond1_4347	chr17	27008263	27008493	+	4.88512	NA	Intergenic	MT2B1|LTR|ERVL	-9657	NM_001251881	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_9531	chr8	48688656	48688978	+	4.88506	NA	Intergenic	MIRb|SINE|MIR	-14127	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_8832	chr7	13314163	13314440	+	4.88490	NA	Intergenic	Intergenic	-11366	NM_001168504	232889	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding
diff_RLAGL_Vector_cond1_31	chr1	9014558	9014957	+	4.88401	NA	intron (NM_001290390, intron 2 of 20)	Lx6|LINE|L1	285120	NM_027671	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_1104	chr10	69845794	69846037	+	4.88322	NA	intron (NM_170690, intron 7 of 41)	intron (NM_170690, intron 7 of 41)	-79617	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
diff_RLAGL_Vector_cond1_9207	chr7	118929843	118930170	+	4.88235	NA	intron (NM_001081446, intron 7 of 8)	intron (NM_001081446, intron 7 of 8)	65205	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding
diff_RLAGL_Vector_cond1_7325	chr4	133257929	133258134	+	4.88220	NA	intron (NM_031393, intron 5 of 14)	intron (NM_031393, intron 5 of 14)	5056	NM_031393	269589	Mm.25660	NM_031393	ENSMUSG00000028860	Sytl1	9030417L18|PSGL-1|Slp1	synaptotagmin-like 1	protein-coding
diff_RLAGL_Vector_cond1_3817	chr15	100632310	100632545	+	4.88205	NA	intron (NR_104337, intron 2 of 3)	L2|LINE|L2	3132	NM_001285413	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding
diff_RLAGL_Vector_cond1_9568	chr8	61224073	61224356	+	4.88114	NA	promoter-TSS (NM_021506)	promoter-TSS (NM_021506)	43	NM_021506	59009	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding
diff_RLAGL_Vector_cond1_4295	chr17	18360104	18360306	+	4.88112	NA	Intergenic	RLTR22_Mur|LTR|ERVK	61924	NM_001104542	627132	Mm.469862	NM_001104542	ENSMUSG00000079698	Vmn2r93	EG627132	vomeronasal 2, receptor 93	protein-coding
diff_RLAGL_Vector_cond1_8629	chr6	127152370	127152765	+	4.88032	NA	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-1519	NM_009829	12444	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding
diff_RLAGL_Vector_cond1_469	chr1	129908519	129908731	+	4.87879	NA	intron (NM_172485, intron 12 of 27)	MTD|LTR|ERVL-MaLR	514374	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding
diff_RLAGL_Vector_cond1_1679	chr11	59994416	59994632	+	4.87850	NA	intron (NM_001290014, intron 2 of 4)	intron (NM_001290014, intron 2 of 4)	-29580	NM_009026	19416	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding
diff_RLAGL_Vector_cond1_2125	chr12	24651226	24651457	+	4.87826	NA	promoter-TSS (NM_178357)	promoter-TSS (NM_178357)	-30	NM_178357	194655	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding
diff_RLAGL_Vector_cond1_8028	chr5	135148897	135149504	+	4.87722	NA	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-511	NM_013763	27368	Mm.36746	NM_013763		Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding
diff_RLAGL_Vector_cond1_694	chr1	174503314	174503758	+	4.87699	NA	exon (NM_019445, exon 1 of 18)	exon (NM_019445, exon 1 of 18)	1711	NM_019445	54418	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding
diff_RLAGL_Vector_cond1_5046	chr19	3907232	3907604	+	4.87659	NA	promoter-TSS (NM_001136091)	promoter-TSS (NM_001136091)	-285	NM_001136091	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding
diff_RLAGL_Vector_cond1_5952	chr2	153492999	153493375	+	4.87541	NA	intron (NM_001134300, intron 1 of 10)	C-rich|Low_complexity|Low_complexity	36784	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding
diff_RLAGL_Vector_cond1_7109	chr4	87911563	87911806	+	4.87503	NA	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	-105361	NM_029931	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	protein-coding
diff_RLAGL_Vector_cond1_9341	chr8	4350615	4350930	+	4.87340	NA	intron (NM_009138, intron 2 of 5)	intron (NM_009138, intron 2 of 5)	1184	NM_009138	20300	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding
diff_RLAGL_Vector_cond1_621	chr1	162515164	162515461	+	4.87312	NA	Intergenic	MLT1A1-int|LTR|ERVL-MaLR	33033	NM_144877	71449	Mm.270569	NM_144877		Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding
diff_RLAGL_Vector_cond1_8510	chr6	98848846	98849095	+	4.87252	NA	Intergenic	Intergenic	179328	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
diff_RLAGL_Vector_cond1_6578	chr3	125983775	125983994	+	4.87215	NA	Intergenic	MT2A|LTR|ERVL	-45334	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding
diff_RLAGL_Vector_cond1_9210	chr7	119895733	119895995	+	4.87145	NA	promoter-TSS (NM_001163703)	promoter-TSS (NM_001163703)	3	NM_001285959	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding
diff_RLAGL_Vector_cond1_10247	chr9	98986125	98986366	+	4.87127	NA	promoter-TSS (NM_001122851)	promoter-TSS (NM_001122851)	-128	NM_001122851	23873	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding
diff_RLAGL_Vector_cond1_6184	chr3	17787261	17787538	+	4.87106	NA	Intergenic	Intergenic	-2522	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	2610100L16Rik	100040120|Gm2612	RIKEN cDNA 2610100L16 gene	ncRNA
diff_RLAGL_Vector_cond1_1680	chr11	60046164	60046473	+	4.87045	NA	intron (NM_001290012, intron 1 of 6)	CpG	171	NM_001290012	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding
diff_RLAGL_Vector_cond1_7028	chr4	63710484	63711172	+	4.86935	NA	Intergenic	Intergenic	34285	NM_177371	326623	Mm.208152	NM_177371		Tnfsf15	Tl1|Tl1a|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding
diff_RLAGL_Vector_cond1_9401	chr8	18953990	18954307	+	4.86897	NA	Intergenic	Intergenic	-3173	NM_001113350	319581	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X Kell blood group precursor-related family, member 5	protein-coding
diff_RLAGL_Vector_cond1_6148	chr3	8700459	8700719	+	4.86846	NA	Intergenic	ORR1A3|LTR|ERVL-MaLR	-33551	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding
diff_RLAGL_Vector_cond1_2590	chr13	23544206	23544501	+	4.86819	NA	promoter-TSS (NM_178197)	promoter-TSS (NM_178197)	301	NM_013548	260423	Mm.221389	NM_013548		Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding
diff_RLAGL_Vector_cond1_9507	chr8	45129306	45129861	+	4.86751	NA	Intergenic	MER2|DNA|TcMar-Tigger	35562	NR_040690	622523	Mm.390032	NR_040690		Gm6329	EG622523	predicted gene 6329	ncRNA
diff_RLAGL_Vector_cond1_2200	chr12	40908078	40908346	+	4.86697	NA	Intergenic	RLTR13B1|LTR|ERVK	-115878	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_731	chr1	180279777	180280058	+	4.86671	NA	Intergenic	Intergenic	-23617	NM_001128605	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding
diff_RLAGL_Vector_cond1_8256	chr6	34317302	34317725	+	4.86613	NA	promoter-TSS (NR_037965)	promoter-TSS (NR_037965)	-24	NM_009658	11677	Mm.451	NM_009658	ENSMUSG00000001642	Akr1b3	ALR2|AR|Ahr-1|Ahr1|Akr1b1|Aldor1|Aldr1	aldo-keto reductase family 1, member B3 (aldose reductase)	protein-coding
diff_RLAGL_Vector_cond1_1668	chr11	58307621	58307956	+	4.86597	NA	intron (NM_182996, intron 2 of 11)	intron (NM_182996, intron 2 of 11)	719	NM_182996	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding
diff_RLAGL_Vector_cond1_9022	chr7	65803558	65803856	+	4.86531	NA	promoter-TSS (NR_045301)	promoter-TSS (NR_045301)	-345	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA
diff_RLAGL_Vector_cond1_3074	chr14	32546654	32546927	+	4.86513	NA	exon (NM_001081221, exon 7 of 21)	exon (NM_001081221, exon 7 of 21)	33269	NM_001081221	319955	Mm.318310	NM_177043	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding
diff_RLAGL_Vector_cond1_7642	chr5	36464735	36464984	+	4.86513	NA	promoter-TSS (NR_126490)	promoter-TSS (NR_126490)	-5	NR_126489	76710	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA
diff_RLAGL_Vector_cond1_6809	chr4	8203398	8203695	+	4.86504	NA	intron (NM_007592, intron 3 of 8)	intron (NM_007592, intron 3 of 8)	35495	NM_007592	12319	Mm.119320	NM_007592		Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding
diff_RLAGL_Vector_cond1_7592	chr5	24842524	24842944	+	4.86461	NA	promoter-TSS (NM_053075)	promoter-TSS (NM_053075)	-373	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding
diff_RLAGL_Vector_cond1_1710	chr11	65806511	65806743	+	4.86457	NA	promoter-TSS (NM_001302375)	promoter-TSS (NM_001302375)	-548	NM_001302374	52712	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding
diff_RLAGL_Vector_cond1_2981	chr13	119835511	119835826	+	4.86441	NA	Intergenic	Intergenic	-5451	NM_001001449	380878	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding
diff_RLAGL_Vector_cond1_9689	chr8	87219141	87219345	+	4.86303	NA	Intergenic	Intergenic	-19393	NR_040697	100038706	Mm.334690	NR_040697	ENSMUSG00000099207	Gm10637	ENSMUSG00000074176	predicted gene 10637	ncRNA
diff_RLAGL_Vector_cond1_6944	chr4	44234273	44234480	+	4.86291	NA	Intergenic	Intergenic	-13109	NR_039565	100628618		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA
diff_RLAGL_Vector_cond1_10379	chr9	123529366	123529742	+	4.86278	NA	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-328	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10000	chr9	34488697	34488965	+	4.86252	NA	promoter-TSS (NM_026324)	promoter-TSS (NM_026324)	100	NM_001190912	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7892	chr5	106891823	106892084	+	4.86211	NA	intron (NM_177873, intron 19 of 39)	intron (NM_177873, intron 19 of 39)	33937	NM_177873	330149	Mm.121664	NM_177873	ENSMUSG00000043410	Hfm1	A330009G12Rik|Gm1046|Mer3|Sec63d1	HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_9271	chr7	133007278	133007566	+	4.86162	NA	intron (NM_009980, intron 3 of 10)	intron (NM_009980, intron 3 of 10)	7825	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_6663	chr3	142882349	142882605	+	4.86095	NA	promoter-TSS (NM_178654)	promoter-TSS (NM_178654)	-473	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding
diff_RLAGL_Vector_cond1_10197	chr9	85843617	85843828	+	4.86087	NA	5' UTR (NM_001164792, exon 2 of 2)	5' UTR (NM_001164792, exon 2 of 2)	870	NM_001164792	21983	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding
diff_RLAGL_Vector_cond1_2865	chr13	90089443	90089715	+	4.86056	NA	promoter-TSS (NM_028012)	promoter-TSS (NM_028012)	29	NM_028012	108138	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding
diff_RLAGL_Vector_cond1_5177	chr19	46075584	46075937	+	4.85946	NA	promoter-TSS (NM_001039353)	promoter-TSS (NM_001039353)	-87	NM_001039353	70769	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding
diff_RLAGL_Vector_cond1_9985	chr9	29643354	29643560	+	4.85938	NA	intron (NM_172290, intron 1 of 7)	intron (NM_172290, intron 1 of 7)	319672	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
diff_RLAGL_Vector_cond1_2974	chr13	119283530	119283760	+	4.85824	NA	Intergenic	Intergenic	125366	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding
diff_RLAGL_Vector_cond1_2543	chr13	10526466	10527033	+	4.85706	NA	Intergenic	Intergenic	-165946	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding
diff_RLAGL_Vector_cond1_3188	chr14	67234402	67234706	+	4.85640	NA	intron (NM_010095, intron 1 of 16)	CpG	1262	NM_010095	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding
diff_RLAGL_Vector_cond1_2890	chr13	98589004	98589501	+	4.85595	NA	Intergenic	CpG	48158	NM_026685	68344	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding
diff_RLAGL_Vector_cond1_8169	chr6	12020017	12020372	+	4.85593	NA	intron (NM_001168382, intron 16 of 17)	MTC|LTR|ERVL-MaLR	89386	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo
diff_RLAGL_Vector_cond1_68	chr1	18524507	18524854	+	4.85530	NA	Intergenic	L3|LINE|CR1	-259542	NM_001040027	654464	Mm.99530	NM_001040027		Gm15386	BD-17|BD-41|Defb17|Defb41|OTTMUSG00000020946|OTTMUSG00000020948|mBD-41	predicted gene 15386	protein-coding
diff_RLAGL_Vector_cond1_6307	chr3	55111920	55112128	+	4.85530	NA	promoter-TSS (NM_001144987)	promoter-TSS (NM_001144987)	-84	NM_144895	229285	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding
diff_RLAGL_Vector_cond1_4573	chr17	70894892	70895279	+	4.85418	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	-41553	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_7342	chr4	134223393	134223595	+	4.85404	NA	intron (NM_177866, intron 3 of 10)	intron (NM_177866, intron 3 of 10)	3889	NM_001130030	329954	Mm.79072	NM_177866	ENSMUSG00000048003	Catsper4	4933412L05	cation channel, sperm associated 4	protein-coding
diff_RLAGL_Vector_cond1_6406	chr3	78901408	78901809	+	4.85306	NA	Intergenic	Intergenic	243279	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
diff_RLAGL_Vector_cond1_1861	chr11	98395008	98395399	+	4.85241	NA	intron (NM_001033537, intron 3 of 7)	intron (NM_001033537, intron 3 of 7)	5287	NM_001033537	320655	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding
diff_RLAGL_Vector_cond1_7748	chr5	63968696	63969023	+	4.85233	NA	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	38	NM_145923	100532	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding
diff_RLAGL_Vector_cond1_8619	chr6	125165636	125165889	+	4.85231	NA	promoter-TSS (NM_008084)	promoter-TSS (NM_008084)	11	NM_008084	14433	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding
diff_RLAGL_Vector_cond1_1907	chr11	103810007	103810468	+	4.85170	NA	intron (NM_009521, intron 2 of 4)	CpG	36062	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
diff_RLAGL_Vector_cond1_6352	chr3	63814140	63814341	+	4.85116	NA	intron (NM_183191, intron 1 of 22)	intron (NM_183191, intron 1 of 22)	36751	NM_001177732	269437	Mm.316391	NM_183191	ENSMUSG00000036834	Plch1	BC042549|PLC-eta-1|PLCeta1|Plcl3	phospholipase C, eta 1	protein-coding
diff_RLAGL_Vector_cond1_3752	chr15	88751292	88751621	+	4.85115	NA	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-255	NM_181412	223773	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding
diff_RLAGL_Vector_cond1_363	chr1	92907149	92907546	+	4.85051	NA	exon (NM_175118, exon 1 of 2)	exon (NM_175118, exon 1 of 2)	358	NM_175118	67446	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding
diff_RLAGL_Vector_cond1_5731	chr2	118099087	118099405	+	4.84920	NA	intron (NR_126479, intron 2 of 9)	intron (NR_126479, intron 2 of 9)	11956	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA
diff_RLAGL_Vector_cond1_3600	chr15	55089902	55090104	+	4.84916	NA	intron (NM_183089, intron 1 of 8)	intron (NM_183089, intron 1 of 8)	475	NM_183089	72107	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	defective in sister chromatid cohesion 1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_5451	chr2	49451866	49452295	+	4.84824	NA	intron (NM_172663, intron 1 of 13)	CpG	594	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2969	chr13	118273017	118273323	+	4.84698	NA	Intergenic	Intergenic	114082	NM_021556	59054	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding
diff_RLAGL_Vector_cond1_4123	chr16	76878597	76878902	+	4.84681	NA	Intergenic	Intergenic	132132	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA
diff_RLAGL_Vector_cond1_6321	chr3	57575544	57576053	+	4.84631	NA	promoter-TSS (NM_133784)	promoter-TSS (NM_133784)	78	NM_133784	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding
diff_RLAGL_Vector_cond1_8476	chr6	91145064	91145311	+	4.84597	NA	Intergenic	Intergenic	-11628	NM_144919	232232	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding
diff_RLAGL_Vector_cond1_7339	chr4	134061883	134062376	+	4.84398	NA	Intergenic	Intergenic	-6323	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding
diff_RLAGL_Vector_cond1_3142	chr14	55540102	55540337	+	4.84330	NA	promoter-TSS (NM_028994)	promoter-TSS (NM_028994)	-47	NM_028994	74551	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding
diff_RLAGL_Vector_cond1_9662	chr8	81806910	81807135	+	4.84171	NA	intron (NM_001024617, intron 7 of 24)	intron (NM_001024617, intron 7 of 24)	464460	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding
diff_RLAGL_Vector_cond1_1136	chr10	77211171	77211370	+	4.84128	NA	Intergenic	Intergenic	-44740	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_724	chr1	179136806	179137114	+	4.84126	NA	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	381043	NM_027188	69726	Mm.222338	NM_027188		Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_1739	chr11	73018931	73019150	+	4.83961	NA	promoter-TSS (NM_018883)	promoter-TSS (NM_018883)	32	NM_018883	55984	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding
diff_RLAGL_Vector_cond1_7211	chr4	111886054	111886415	+	4.83958	NA	intron (NM_145551, intron 11 of 14)	intron (NM_145551, intron 11 of 14)	16562	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding
diff_RLAGL_Vector_cond1_6508	chr3	104227372	104227614	+	4.83847	NA	Intergenic	Intergenic	-7087	NM_133853	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4407	chr17	35879612	35879870	+	4.83831	NA	promoter-TSS (NM_026987)	promoter-TSS (NM_026987)	-37	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding
diff_RLAGL_Vector_cond1_10083	chr9	51230707	51231001	+	4.83830	NA	intron (NM_011136, intron 1 of 4)	intron (NM_011136, intron 1 of 4)	17164	NM_011136	18985	Mm.897	NM_011136	ENSMUSG00000032053	Pou2af1	BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB	POU domain, class 2, associating factor 1	protein-coding
diff_RLAGL_Vector_cond1_1389	chr10	121263703	121264027	+	4.83719	NA	TTS (NM_029057)	TTS (NM_029057)	47324	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding
diff_RLAGL_Vector_cond1_9282	chr7	135537630	135537892	+	4.83703	NA	promoter-TSS (NM_011212)	promoter-TSS (NM_011212)	-63	NM_001316678	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding
diff_RLAGL_Vector_cond1_914	chr10	19531513	19531834	+	4.83636	NA	Intergenic	L2c|LINE|L2	-60285	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding
diff_RLAGL_Vector_cond1_4583	chr17	72399386	72399629	+	4.83609	NA	intron (NM_007439, intron 1 of 28)	MIRb|SINE|MIR	204800	NM_007439	11682	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding
diff_RLAGL_Vector_cond1_3724	chr15	81190671	81191072	+	4.83594	NA	promoter-TSS (NM_001082536)	promoter-TSS (NM_001082536)	18	NR_015603	67638	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA
diff_RLAGL_Vector_cond1_897	chr10	14545224	14545480	+	4.83576	NA	promoter-TSS (NM_001002268)	promoter-TSS (NM_001002268)	-316	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding
diff_RLAGL_Vector_cond1_3200	chr14	70179451	70179764	+	4.83386	NA	TTS (NM_011366)	TTS (NM_011366)	-1935	NM_145978	213019	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding
diff_RLAGL_Vector_cond1_3272	chr14	98037300	98037500	+	4.83368	NA	intron (NM_007826, intron 1 of 11)	intron (NM_007826, intron 1 of 11)	132365	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_157	chr1	43534232	43534605	+	4.83267	NA	intron (NM_010879, intron 3 of 4)	ORR1F|LTR|ERVL-MaLR	88667	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding
diff_RLAGL_Vector_cond1_7625	chr5	33105060	33105300	+	4.83239	NA	intron (NM_019810, intron 1 of 14)	intron (NM_019810, intron 1 of 14)	961	NM_019810	20537	Mm.25237	NM_019810	ENSMUSG00000011034	Slc5a1	Sglt1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding
diff_RLAGL_Vector_cond1_10408	chrX	19237833	19238040	+	4.83195	NA	Intergenic	GC_rich|Low_complexity|Low_complexity	-90965	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA
diff_RLAGL_Vector_cond1_938	chr10	26494410	26494866	+	4.83103	NA	Intergenic	Intergenic	-119453	NM_172787	237339	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	l(3)mbt-like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4832	chr18	38510222	38510644	+	4.83074	NA	Intergenic	MLTR11A|LTR|ERVK	90835	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7146	chr4	97630030	97630337	+	4.83065	NA	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-45592	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA
diff_RLAGL_Vector_cond1_10516	chrX	109013366	109013665	+	4.83051	NA	promoter-TSS (NM_016710)	promoter-TSS (NM_016710)	-135	NM_016710	50887	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding
diff_RLAGL_Vector_cond1_5212	chr19	53903315	53903563	+	4.82977	NA	promoter-TSS (NM_001168492)	promoter-TSS (NM_001168492)	88	NM_001168492	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding
diff_RLAGL_Vector_cond1_658	chr1	168597868	168598304	+	4.82914	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	107443	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA
diff_RLAGL_Vector_cond1_1489	chr11	9014723	9014953	+	4.82911	NA	Intergenic	Intergenic	-3647	NR_130178	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	Hus1 homolog (S. pombe)	protein-coding
diff_RLAGL_Vector_cond1_6751	chr3	154880219	154880427	+	4.82906	NA	intron (NM_177066, intron 17 of 24)	intron (NM_177066, intron 17 of 24)	169190	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
diff_RLAGL_Vector_cond1_5022	chr18	86334925	86335199	+	4.82841	NA	Intergenic	LTR80B|LTR|ERVL	-59890	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
diff_RLAGL_Vector_cond1_8404	chr6	72401998	72402210	+	4.82794	NA	Intergenic	B3A|SINE|B2	-11437	NM_016794	22320	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding
diff_RLAGL_Vector_cond1_2481	chr12	117450128	117450504	+	4.82771	NA	Intergenic	Intergenic	-66163	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding
diff_RLAGL_Vector_cond1_960	chr10	30718836	30719260	+	4.82742	NA	intron (NM_172495, intron 3 of 15)	intron (NM_172495, intron 3 of 15)	-63181	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding
diff_RLAGL_Vector_cond1_9997	chr9	32223973	32224260	+	4.82731	NA	promoter-TSS (NM_177379)	promoter-TSS (NM_177379)	-133	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding
diff_RLAGL_Vector_cond1_7969	chr5	122354121	122354518	+	4.82671	NA	promoter-TSS (NM_144912)	promoter-TSS (NM_144912)	-94	NM_019780	56433	Mm.216528	NM_019780	ENSMUSG00000029462	Vps29	2010015D08Rik|AW049835|PEP11	vacuolar protein sorting 29 (S. pombe)	protein-coding
diff_RLAGL_Vector_cond1_5774	chr2	127541280	127541527	+	4.82664	NA	promoter-TSS (NM_178047)	promoter-TSS (NM_178047)	14	NM_138750	192212	Mm.34171	NM_138750	ENSMUSG00000027376	Prom2	AI507243|Prom-rp	prominin 2	protein-coding
diff_RLAGL_Vector_cond1_5757	chr2	124465624	124465900	+	4.82630	NA	intron (NM_001290997, intron 4 of 20)	intron (NM_001290997, intron 4 of 20)	-144534	NM_001291000	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
diff_RLAGL_Vector_cond1_2613	chr13	29202519	29202840	+	4.82612	NA	intron (NR_131896, intron 15 of 16)	intron (NR_131896, intron 15 of 16)	186424	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
diff_RLAGL_Vector_cond1_9690	chr8	87472371	87472890	+	4.82573	NA	promoter-TSS (NR_033430)	promoter-TSS (NR_033430)	-38	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding
diff_RLAGL_Vector_cond1_9326	chr7	143977919	143978253	+	4.82541	NA	intron (NR_037302, intron 5 of 5)	CpG	-31168	NR_037292	100526562		NR_037292	ENSMUSG00000093221	Mir3105	mmu-mir-3105	microRNA 3105	ncRNA
diff_RLAGL_Vector_cond1_8894	chr7	30090148	30090546	+	4.82535	NA	5' UTR (NM_152814, exon 1 of 4)	5' UTR (NM_152814, exon 1 of 4)	163	NM_152814	72556	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding
diff_RLAGL_Vector_cond1_8838	chr7	16285802	16286079	+	4.82498	NA	intron (NM_001136471, intron 1 of 13)	intron (NM_001136471, intron 1 of 13)	855	NM_001136471	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding
diff_RLAGL_Vector_cond1_10175	chr9	80192311	80192563	+	4.82452	NA	intron (NM_001039546, intron 1 of 32)	intron (NM_001039546, intron 1 of 32)	27403	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding
diff_RLAGL_Vector_cond1_34	chr1	9381076	9381345	+	4.82226	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-81333	NM_001290390	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_7910	chr5	110057753	110058294	+	4.82216	NA	Intergenic	Intergenic	-41946	NM_207279	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7116	chr4	88987231	88987442	+	4.82161	NA	Intergenic	RMER17C|LTR|ERVK	-45294	NR_132735	106557447	Mm.484668	NR_132734		LOC106557447	-	uncharacterized LOC106557447	ncRNA
diff_RLAGL_Vector_cond1_4509	chr17	56716647	56717010	+	4.82160	NA	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	93	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding
diff_RLAGL_Vector_cond1_10265	chr9	104262951	104263347	+	4.82110	NA	promoter-TSS (NM_001163026)	promoter-TSS (NM_001163026)	-219	NM_001163026	235567	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ (Hsp40) homolog, subfamily C, member 13	protein-coding
diff_RLAGL_Vector_cond1_77	chr1	21014640	21014876	+	4.82056	NA	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	63132	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding
diff_RLAGL_Vector_cond1_4206	chr16	93992410	93992670	+	4.82013	NA	intron (NM_019500, intron 1 of 2)	intron (NM_019500, intron 1 of 2)	16297	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding
diff_RLAGL_Vector_cond1_8749	chr6	144057000	144057206	+	4.81999	NA	intron (NM_001113559, intron 3 of 13)	intron (NM_001113559, intron 3 of 13)	152465	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
diff_RLAGL_Vector_cond1_6459	chr3	93444504	93444751	+	4.81950	NA	exon (NM_001163098, exon 2 of 2)	exon (NM_001163098, exon 2 of 2)	2297	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding
diff_RLAGL_Vector_cond1_2140	chr12	27458850	27459168	+	4.81930	NA	Intergenic	Intergenic	-116291	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding
diff_RLAGL_Vector_cond1_1196	chr10	83398667	83398896	+	4.81901	NA	Intergenic	RLTR9E|LTR|ERVK	38560	NM_026579	28109	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding
diff_RLAGL_Vector_cond1_10281	chr9	107296495	107296785	+	4.81850	NA	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-49	NM_009895	12700	Mm.4592	NM_009895		Cish	AI385595|CIS1|Cis|F17|F23	cytokine inducible SH2-containing protein	protein-coding
diff_RLAGL_Vector_cond1_7081	chr4	82283464	82283687	+	4.81788	NA	Intergenic	Intergenic	218195	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA
diff_RLAGL_Vector_cond1_359	chr1	91540389	91540721	+	4.81763	NA	promoter-TSS (NM_001039126)	promoter-TSS (NM_001039126)	-10	NM_001039126	65247	Mm.234152	NM_023046		Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding
diff_RLAGL_Vector_cond1_8466	chr6	90369236	90370354	+	4.81700	NA	exon (NM_030260, exon 1 of 6)	exon (NM_030260, exon 1 of 6)	301	NM_030260	80292	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding
diff_RLAGL_Vector_cond1_8326	chr6	54052720	54052931	+	4.81655	NA	intron (NM_001163640, intron 1 of 12)	ORR1B2|LTR|ERVL-MaLR	12893	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding
diff_RLAGL_Vector_cond1_2414	chr12	104830065	104830412	+	4.81601	NA	intron (NM_053155, intron 1 of 13)	intron (NM_053155, intron 1 of 13)	34838	NR_104438	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding
diff_RLAGL_Vector_cond1_4633	chr17	82729570	82729830	+	4.81590	NA	Intergenic	Intergenic	348525	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
diff_RLAGL_Vector_cond1_8800	chr7	6147679	6148019	+	4.81499	NA	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	8122	NM_001013012	67109	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding
diff_RLAGL_Vector_cond1_8043	chr5	136679012	136679238	+	4.81493	NA	Intergenic	Intergenic	-14021	NM_001303019	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding
diff_RLAGL_Vector_cond1_5959	chr2	154790596	154790803	+	4.81430	NA	promoter-TSS (NM_023130)	promoter-TSS (NM_023130)	-411	NM_001139513	19383	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding
diff_RLAGL_Vector_cond1_7698	chr5	47695958	47696251	+	4.81356	NA	Intergenic	Intergenic	-287051	NM_178804	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3365	chr14	118706075	118706366	+	4.81316	NA	promoter-TSS (NM_001033336)	promoter-TSS (NM_001033336)	-1	NM_001163676	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding
diff_RLAGL_Vector_cond1_8444	chr6	86765993	86766260	+	4.81312	NA	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	27458	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding
diff_RLAGL_Vector_cond1_622	chr1	162548341	162548677	+	4.81289	NA	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-164	NM_144877	71449	Mm.270569	NM_144877		Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding
diff_RLAGL_Vector_cond1_5126	chr19	27216785	27217037	+	4.81271	NA	promoter-TSS (NM_001161420)	promoter-TSS (NM_001161420)	-109	NM_001161420	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding
diff_RLAGL_Vector_cond1_1146	chr10	78464861	78465160	+	4.81240	NA	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-62	NM_172134	216134	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding
diff_RLAGL_Vector_cond1_4266	chr17	13465801	13466000	+	4.81205	NA	Intergenic	Intergenic	-55556	NR_030763	272667	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo
diff_RLAGL_Vector_cond1_9677	chr8	84237159	84237374	+	4.81174	NA	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-224	NM_172503	212168	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding
diff_RLAGL_Vector_cond1_4081	chr16	65629283	65629506	+	4.81087	NA	Intergenic	Intergenic	-66697	NM_026879	68942	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding
diff_RLAGL_Vector_cond1_2108	chr12	17544571	17544803	+	4.81050	NA	promoter-TSS (NM_013614)	promoter-TSS (NM_013614)	-186	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding
diff_RLAGL_Vector_cond1_2374	chr12	95753265	95754020	+	4.80969	NA	intron (NM_201518, intron 1 of 1)	MTE2b|LTR|ERVL-MaLR	61416	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
diff_RLAGL_Vector_cond1_1557	chr11	24618656	24618961	+	4.80946	NA	Intergenic	Intergenic	111914	NR_033491	100038617	Mm.387376	NR_033491	ENSMUSG00000073103	Gm10466	ENSMUSG00000073103	predicted gene 10466	ncRNA
diff_RLAGL_Vector_cond1_9644	chr8	78649003	78649212	+	4.80926	NA	intron (NR_104094, intron 4 of 9)	intron (NR_104094, intron 4 of 9)	139779	NM_029736	76775	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding
diff_RLAGL_Vector_cond1_8121	chr5	150625755	150626095	+	4.80876	NA	Intergenic	Intergenic	-31400	NM_133898	100637	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding
diff_RLAGL_Vector_cond1_47	chr1	10348925	10349196	+	4.80766	NA	intron (NM_177834, intron 8 of 10)	intron (NM_177834, intron 8 of 10)	-116390	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding
diff_RLAGL_Vector_cond1_1077	chr10	59879769	59880136	+	4.80755	NA	intron (NM_019965, intron 1 of 8)	CpG	361	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ (Hsp40) homolog, subfamily B, member 12	protein-coding
diff_RLAGL_Vector_cond1_1363	chr10	117576164	117576369	+	4.80728	NA	Intergenic	Intergenic	-53234	NM_027468	70574	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding
diff_RLAGL_Vector_cond1_1767	chr11	78177902	78178550	+	4.80725	NA	promoter-TSS (NM_026708)	promoter-TSS (NM_026708)	77	NM_001291237	68385	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1921	chr11	108528183	108528396	+	4.80722	NA	intron (NM_029606, intron 17 of 27)	intron (NM_029606, intron 17 of 27)	103023	NM_029606	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding
diff_RLAGL_Vector_cond1_1599	chr11	35750551	35750986	+	4.80585	NA	Intergenic	Intergenic	-18727	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding
diff_RLAGL_Vector_cond1_9898	chr9	7184394	7184799	+	4.80575	NA	promoter-TSS (NM_029775)	promoter-TSS (NM_029775)	30	NM_029775	76863	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_153	chr1	43098448	43098662	+	4.80556	NA	promoter-TSS (NM_133818)	promoter-TSS (NM_133818)	67	NM_001013025	73122	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_7920	chr5	111196005	111196227	+	4.80416	NA	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-134581	NM_001301643	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding
diff_RLAGL_Vector_cond1_150	chr1	42491749	42492106	+	4.80383	NA	Intergenic	CpG	202898	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
diff_RLAGL_Vector_cond1_9523	chr8	47743462	47743661	+	4.80378	NA	Intergenic	Intergenic	-29630	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding
diff_RLAGL_Vector_cond1_4370	chr17	32483237	32483576	+	4.80376	NA	exon (NM_177307, exon 8 of 14)	exon (NM_177307, exon 8 of 14)	-23056	NM_001101445	208285	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding
diff_RLAGL_Vector_cond1_2816	chr13	74139023	74139293	+	4.80259	NA	intron (NM_001081060, intron 1 of 15)	intron (NM_001081060, intron 1 of 15)	17643	NM_001081060	105243	Mm.261564	NM_001081060	ENSMUSG00000036123	Slc9a3	9030624O13Rik|AI930210|NHE-3|NHE3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	protein-coding
diff_RLAGL_Vector_cond1_5835	chr2	137764893	137765106	+	4.80257	NA	Intergenic	Intergenic	-491585	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_6325	chr3	58002974	58003369	+	4.80253	NA	Intergenic	Intergenic	-155414	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding
diff_RLAGL_Vector_cond1_1798	chr11	85775432	85775750	+	4.80230	NA	promoter-TSS (NR_046194)	promoter-TSS (NR_046194)	89	NR_046194	78420	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA
diff_RLAGL_Vector_cond1_5946	chr2	153015354	153015587	+	4.80174	NA	promoter-TSS (NM_178939)	promoter-TSS (NM_178939)	-87	NM_178939	68559	Mm.12746	NM_178939	ENSMUSG00000027472	Pdrg1	1110004D19Rik|AU020945|AV006589|Pdrg	p53 and DNA damage regulated 1	protein-coding
diff_RLAGL_Vector_cond1_7260	chr4	121215043	121215271	+	4.80088	NA	Intergenic	CpG	-26623	NM_001081013	109263	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding
diff_RLAGL_Vector_cond1_7570	chr5	20951659	20951860	+	4.80015	NA	promoter-TSS (NM_001080977)	promoter-TSS (NM_001080977)	63	NM_001080977	242860	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding
diff_RLAGL_Vector_cond1_10419	chrX	38635142	38635491	+	4.79969	NA	promoter-TSS (NM_021550)	promoter-TSS (NM_021550)	-173	NM_021550	59048	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding
diff_RLAGL_Vector_cond1_2817	chr13	74390603	74390932	+	4.79934	NA	Intergenic	Intergenic	-14201	NM_001081680	238722	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding
diff_RLAGL_Vector_cond1_8423	chr6	82756948	82757275	+	4.79904	NA	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	17343	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding
diff_RLAGL_Vector_cond1_3184	chr14	65592985	65593230	+	4.79853	NA	promoter-TSS (NR_045599)	promoter-TSS (NR_045599)	5	NR_045599	74195	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding
diff_RLAGL_Vector_cond1_1779	chr11	80784241	80784676	+	4.79795	NA	Intergenic	MTD|LTR|ERVL-MaLR	-4433	NM_177390	338367	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding
diff_RLAGL_Vector_cond1_5597	chr2	84714896	84715232	+	4.79746	NA	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	100	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_5825	chr2	136920145	136920368	+	4.79719	NA	intron (NM_028201, intron 2 of 5)	intron (NM_028201, intron 2 of 5)	20905	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_8138	chr6	4749055	4749473	+	4.79668	NA	intron (NM_130877, intron 1 of 1)	intron (NM_130877, intron 1 of 1)	1958	NM_001040611	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding
diff_RLAGL_Vector_cond1_4210	chr16	94724100	94724460	+	4.79541	NA	Intergenic	Intergenic	132410	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
diff_RLAGL_Vector_cond1_517	chr1	136991917	136992158	+	4.79475	NA	Intergenic	Intergenic	-31589	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding
diff_RLAGL_Vector_cond1_6424	chr3	84021984	84022219	+	4.79446	NA	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	18060	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding
diff_RLAGL_Vector_cond1_5781	chr2	129224144	129224447	+	4.79430	NA	intron (NR_045838, intron 1 of 4)	intron (NR_045838, intron 1 of 4)	5326	NR_045838	329513	Mm.473529	NM_177847	ENSMUSG00000056738	A730036I17Rik	-	RIKEN cDNA A730036I17 gene	ncRNA
diff_RLAGL_Vector_cond1_6464	chr3	94783721	94783936	+	4.79374	NA	intron (NM_001293727, intron 1 of 20)	intron (NM_001293727, intron 1 of 20)	2687	NM_001037711	70737	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding
diff_RLAGL_Vector_cond1_6579	chr3	125984166	125984394	+	4.79252	NA	Intergenic	MTEa-int|LTR|ERVL-MaLR	-45730	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding
diff_RLAGL_Vector_cond1_5183	chr19	46509373	46509613	+	4.79236	NA	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	7845	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding
diff_RLAGL_Vector_cond1_2205	chr12	41084265	41084646	+	4.79164	NA	intron (NM_053122, intron 3 of 6)	intron (NM_053122, intron 3 of 6)	60365	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1242	chr10	89768535	89769005	+	4.79136	NA	intron (NM_029166, intron 1 of 20)	intron (NM_029166, intron 1 of 20)	23779	NM_029166	75089	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding
diff_RLAGL_Vector_cond1_2523	chr13	4942537	4942790	+	4.79083	NA	Intergenic	IAPLTR2_Mm|LTR|ERVK	-333499	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding
diff_RLAGL_Vector_cond1_10341	chr9	119087945	119088674	+	4.78791	NA	promoter-TSS (NM_001293648)	promoter-TSS (NM_001293648)	-48	NM_001293648	18799	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding
diff_RLAGL_Vector_cond1_9371	chr8	10256628	10256833	+	4.78669	NA	intron (NM_001081397, intron 1 of 35)	ORR1D2|LTR|ERVL-MaLR	102807	NM_001081397	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding
diff_RLAGL_Vector_cond1_1896	chr11	102774644	102774890	+	4.78630	NA	intron (NM_009613, intron 17 of 26)	CpG-2684	13328	NM_009613	11488	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding
diff_RLAGL_Vector_cond1_599	chr1	157519467	157519838	+	4.78602	NA	intron (NM_033354, intron 2 of 27)	intron (NM_033354, intron 2 of 27)	-6518	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1444	chr10	128960919	128961165	+	4.78558	NA	promoter-TSS (NM_027853)	promoter-TSS (NM_027853)	-54	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding
diff_RLAGL_Vector_cond1_2452	chr12	111936704	111937213	+	4.78552	NA	Intergenic	Intergenic	7524	NR_029464	77675	Mm.98331	NR_029464		5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA
diff_RLAGL_Vector_cond1_8329	chr6	54429373	54429781	+	4.78547	NA	non-coding (NR_033635, exon 1 of 14)	non-coding (NR_033635, exon 1 of 14)	644	NR_033635	100042056	Mm.448157	NM_198118	ENSMUSG00000073067	9130019P16Rik	6430501H15Rik|OTTMUSG00000023151	RIKEN cDNA 9130019P16 gene	ncRNA
diff_RLAGL_Vector_cond1_9109	chr7	84145776	84146116	+	4.78406	NA	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	5947	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding
diff_RLAGL_Vector_cond1_2244	chr12	54312979	54313603	+	4.78393	NA	Intergenic	CpG	78027	NR_033689	665239	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA
diff_RLAGL_Vector_cond1_6685	chr3	145987716	145988098	+	4.78359	NA	promoter-TSS (NM_001166064)	promoter-TSS (NM_001166064)	37	NM_001166064	214804	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_4406	chr17	35861237	35861689	+	4.78321	NA	exon (NM_134122, exon 1 of 4)	exon (NM_134122, exon 1 of 4)	145	NM_134122	106582	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding
diff_RLAGL_Vector_cond1_5919	chr2	148902436	148902716	+	4.78318	NA	Intergenic	Intergenic	-27064	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding
diff_RLAGL_Vector_cond1_10205	chr9	88482295	88482613	+	4.78245	NA	promoter-TSS (NM_001284328)	promoter-TSS (NM_001284328)	-57	NM_001311113	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding
diff_RLAGL_Vector_cond1_1725	chr11	69816672	69816992	+	4.78199	NA	exon (NM_175368, exon 3 of 3)	exon (NM_175368, exon 3 of 3)	1608	NM_175368	108803	Mm.73263	NM_175368	ENSMUSG00000044084	4933402P03Rik	-	RIKEN cDNA 4933402P03 gene	protein-coding
diff_RLAGL_Vector_cond1_6441	chr3	88509493	88509903	+	4.78196	NA	Intergenic	MIRc|SINE|MIR	-6346	NM_001111102	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding
diff_RLAGL_Vector_cond1_3940	chr16	33786761	33787230	+	4.78195	NA	Intergenic	Intergenic	-7042	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding
diff_RLAGL_Vector_cond1_5794	chr2	132815993	132816305	+	4.78186	NA	promoter-TSS (NM_175113)	promoter-TSS (NM_175113)	8	NM_025676	66634	Mm.157070	NM_025676	ENSMUSG00000027353	Mcm8	5730432L01Rik	minichromosome maintenance deficient 8 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_6271	chr3	42899015	42899242	+	4.78161	NA	Intergenic	Intergenic	1156510	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
diff_RLAGL_Vector_cond1_144	chr1	39887975	39888301	+	4.78095	NA	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-12775	NM_001252202	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding
diff_RLAGL_Vector_cond1_1057	chr10	56106640	56106910	+	4.78092	NA	promoter-TSS (NM_001163833)	promoter-TSS (NM_001163833)	-142	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4719	chr18	5650716	5650994	+	4.78064	NA	intron (NM_011546, intron 1 of 7)	intron (NM_011546, intron 1 of 7)	-58418	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA
diff_RLAGL_Vector_cond1_5557	chr2	75703409	75703747	+	4.78062	NA	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	1085	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding
diff_RLAGL_Vector_cond1_6634	chr3	135422999	135423340	+	4.77983	NA	intron (NM_025902, intron 1 of 2)	CpG	264	NM_025902	67006	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding
diff_RLAGL_Vector_cond1_4776	chr18	20749048	20749363	+	4.77955	NA	Intergenic	Intergenic	-2801	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding
diff_RLAGL_Vector_cond1_4493	chr17	55476062	55476271	+	4.77950	NA	intron (NM_172829, intron 1 of 4)	Lx4A|LINE|L1	30449	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_756	chr1	184353907	184354164	+	4.77897	NA	Intergenic	Intergenic	203656	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA
diff_RLAGL_Vector_cond1_7758	chr5	66618667	66618877	+	4.77840	NA	promoter-TSS (NM_001201414)	promoter-TSS (NM_001201414)	45	NM_001310626	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
diff_RLAGL_Vector_cond1_2991	chr14	8146331	8146549	+	4.77656	NA	intron (NM_145458, intron 12 of 17)	intron (NM_145458, intron 12 of 17)	26552	NM_024221	68263	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding
diff_RLAGL_Vector_cond1_1065	chr10	57763149	57763391	+	4.77612	NA	Intergenic	Intergenic	-21653	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding
diff_RLAGL_Vector_cond1_7604	chr5	30232612	30232947	+	4.77550	NA	exon (NM_027652, exon 1 of 10)	exon (NM_027652, exon 1 of 10)	161	NM_027652	28042	Mm.168854	NM_027652	ENSMUSG00000075703	Ept1	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|SELI|mKIAA1724	ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	protein-coding
diff_RLAGL_Vector_cond1_2552	chr13	12858536	12858786	+	4.77550	NA	Intergenic	Lx|LINE|L1	-58582	NM_011118	18812	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding
diff_RLAGL_Vector_cond1_9324	chr7	143395421	143395621	+	4.77485	NA	intron (NM_008434, intron 15 of 15)	intron (NM_008434, intron 15 of 15)	-64871	NR_045842	71153	Mm.398340	NR_045842	ENSMUSG00000101360	4933417O13Rik	-	RIKEN cDNA 4933417O13 gene	ncRNA
diff_RLAGL_Vector_cond1_5231	chr19	60581119	60581492	+	4.77434	NA	promoter-TSS (NM_001172096)	promoter-TSS (NM_001172096)	-282	NM_001172096	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding
diff_RLAGL_Vector_cond1_8854	chr7	19181063	19181349	+	4.77421	NA	promoter-TSS (NM_001162996)	promoter-TSS (NM_001162996)	36	NM_028153	72205	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik	echinoderm microtubule associated protein like 2	protein-coding
diff_RLAGL_Vector_cond1_9436	chr8	26812960	26813340	+	4.77345	NA	Intergenic	Intergenic	11273	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA
diff_RLAGL_Vector_cond1_10298	chr9	108991599	108992035	+	4.77302	NA	promoter-TSS (NM_173019)	promoter-TSS (NM_173019)	-85	NM_173019	270198	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding
diff_RLAGL_Vector_cond1_3841	chr15	103502854	103503240	+	4.77133	NA	promoter-TSS (NM_008800)	promoter-TSS (NM_008800)	13	NM_008800	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding
diff_RLAGL_Vector_cond1_4900	chr18	57880806	57881064	+	4.77030	NA	intron (NM_009194, intron 1 of 26)	intron (NM_009194, intron 1 of 26)	2257	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding
diff_RLAGL_Vector_cond1_609	chr1	160212707	160213009	+	4.76996	NA	promoter-TSS (NM_009786)	promoter-TSS (NM_009786)	34	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding
diff_RLAGL_Vector_cond1_6787	chr4	3596103	3596321	+	4.76933	NA	intron (NM_054089, intron 8 of 12)	intron (NM_054089, intron 8 of 12)	21333	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_7115	chr4	88977761	88978073	+	4.76926	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-35875	NR_132735	106557447	Mm.484668	NR_132734		LOC106557447	-	uncharacterized LOC106557447	ncRNA
diff_RLAGL_Vector_cond1_9870	chr8	128654727	128655054	+	4.76883	NA	Intergenic	Intergenic	-30764	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding
diff_RLAGL_Vector_cond1_6281	chr3	50456548	50456874	+	4.76869	NA	Intergenic	Intergenic	-13098	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding
diff_RLAGL_Vector_cond1_5743	chr2	120154504	120154911	+	4.76838	NA	promoter-TSS (NM_133838)	promoter-TSS (NM_133838)	-132	NM_133838	98878	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_2119	chr12	21616252	21616596	+	4.76824	NA	Intergenic	RLTR9E|LTR|ERVK	-198988	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_3918	chr16	28210632	28210891	+	4.76824	NA	intron (NM_183064, intron 3 of 4)	intron (NM_183064, intron 3 of 4)	235314	NM_001276420	14167	Mm.7996	NM_010199		Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding
diff_RLAGL_Vector_cond1_10313	chr9	114639961	114640188	+	4.76664	NA	5' UTR (NM_153585, exon 1 of 20)	5' UTR (NM_153585, exon 1 of 20)	126	NM_153585	78893	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding
diff_RLAGL_Vector_cond1_218	chr1	64754525	64754958	+	4.76661	NA	Intergenic	Intergenic	-16991	NM_001042659	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled homolog 5 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_366	chr1	93342714	93343014	+	4.76659	NA	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-76	NM_080850	269224	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding
diff_RLAGL_Vector_cond1_1761	chr11	76846967	76847221	+	4.76640	NA	promoter-TSS (NM_007754)	promoter-TSS (NM_007754)	-86	NM_007754	12874	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding
diff_RLAGL_Vector_cond1_5985	chr2	160223400	160223607	+	4.76623	NA	Intergenic	RMER15|LTR|ERVL	103991	NM_001033411	329554	Mm.291144	NM_001033411		Gm826	-	predicted gene 826	protein-coding
diff_RLAGL_Vector_cond1_5409	chr2	36049222	36049580	+	4.76559	NA	promoter-TSS (NM_029309)	promoter-TSS (NM_029309)	-72	NM_029309	75495	Mm.276332	NM_029309	ENSMUSG00000026894	Morn5	1700010A17Rik	MORN repeat containing 5	protein-coding
diff_RLAGL_Vector_cond1_277	chr1	74962707	74963098	+	4.76452	NA	Intergenic	Intergenic	-11230	NM_001313683	16147	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding
diff_RLAGL_Vector_cond1_7512	chr5	3938901	3939106	+	4.76389	NA	intron (NM_194462, intron 1 of 47)	intron (NM_194462, intron 1 of 47)	10817	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding
diff_RLAGL_Vector_cond1_463	chr1	126747920	126748249	+	4.76288	NA	intron (NM_176957, intron 1 of 12)	intron (NM_176957, intron 1 of 12)	82548	NM_001081756	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding
diff_RLAGL_Vector_cond1_9539	chr8	54074359	54074560	+	4.76188	NA	Intergenic	Intergenic	-3073	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
diff_RLAGL_Vector_cond1_2528	chr13	5803545	5803882	+	4.76161	NA	Intergenic	Intergenic	54379	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
diff_RLAGL_Vector_cond1_1186	chr10	82047925	82048230	+	4.76141	NA	promoter-TSS (NM_001024626)	promoter-TSS (NM_001024626)	-50	NM_001024626	408062	Mm.391409	NM_001024626		Zfp873	-	zinc finger protein 873	protein-coding
diff_RLAGL_Vector_cond1_7853	chr5	99906213	99906660	+	4.76124	NA	Intergenic	CpG	72502	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding
diff_RLAGL_Vector_cond1_3488	chr15	25622003	25622654	+	4.76116	NA	promoter-TSS (NM_019472)	promoter-TSS (NM_019472)	-222	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799	myosin X	protein-coding
diff_RLAGL_Vector_cond1_6239	chr3	34019772	34020030	+	4.76071	NA	promoter-TSS (NM_001113188)	promoter-TSS (NM_001113188)	-178	NM_001113188	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding
diff_RLAGL_Vector_cond1_8453	chr6	88189586	88189960	+	4.76033	NA	Intergenic	CpG	-8891	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_3927	chr16	30883473	30883843	+	4.75982	NA	Intergenic	Intergenic	197774	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_318	chr1	85793269	85793573	+	4.75924	NA	promoter-TSS (NM_133781)	promoter-TSS (NM_133781)	-26	NM_133781	12283	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding
diff_RLAGL_Vector_cond1_8204	chr6	18848387	18848754	+	4.75846	NA	promoter-TSS (NM_133939)	promoter-TSS (NM_133939)	-65	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8787	chr6	149457215	149457570	+	4.75805	NA	intron (NM_001112796, intron 1 of 7)	MLTR18C_MM|LTR|ERVK	48408	NM_001112796	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik	bicaudal D homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4963	chr18	73785503	73785942	+	4.75795	NA	exon (NM_145494, exon 12 of 16)	exon (NM_145494, exon 12 of 16)	29670	NM_145494	107029	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_2958	chr13	116834401	116834740	+	4.75754	NA	Intergenic	Intergenic	190946	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding
diff_RLAGL_Vector_cond1_7782	chr5	73256547	73256846	+	4.75734	NA	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-78	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	furry homolog-like (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9186	chr7	109255514	109255742	+	4.75721	NA	Intergenic	Intergenic	-80421	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding
diff_RLAGL_Vector_cond1_2285	chr12	69184049	69184256	+	4.75599	NA	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	-6	NM_146035	217664	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_2537	chr13	8525997	8526650	+	4.75415	NA	intron (NM_001289530, intron 1 of 9)	intron (NM_001289530, intron 1 of 9)	323457	NR_110345	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
diff_RLAGL_Vector_cond1_3846	chr16	4679750	4679987	+	4.75413	NA	promoter-TSS (NM_030205)	promoter-TSS (NM_030205)	-148	NM_030205	78885	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding
diff_RLAGL_Vector_cond1_342	chr1	88658475	88658709	+	4.75376	NA	Intergenic	Intergenic	43599	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding
diff_RLAGL_Vector_cond1_5518	chr2	63274303	63274503	+	4.75305	NA	Intergenic	Intergenic	-90116	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
diff_RLAGL_Vector_cond1_7398	chr4	141444663	141444993	+	4.75288	NA	intron (NM_009541, intron 1 of 15)	CpG	155	NM_009541	22642	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding
diff_RLAGL_Vector_cond1_8489	chr6	94203973	94204184	+	4.75264	NA	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	33364	NR_130996	78178	Mm.452749	NR_130996		4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA
diff_RLAGL_Vector_cond1_1039	chr10	52277761	52278056	+	4.75244	NA	intron (NM_025705, intron 2 of 10)	B1_Mm|SINE|Alu	44289	NM_025705	66686	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_5620	chr2	90638282	90638550	+	4.75139	NA	Intergenic	Intergenic	-38799	NM_021512	59015	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding
diff_RLAGL_Vector_cond1_2231	chr12	51048567	51048789	+	4.75067	NA	intron (NR_126468, intron 3 of 4)	intron (NR_126468, intron 3 of 4)	43522	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA
diff_RLAGL_Vector_cond1_9096	chr7	82431670	82431892	+	4.75051	NA	intron (NM_001190374, intron 4 of 29)	intron (NM_001190374, intron 4 of 29)	96087	NM_001190374	269959	Mm.65306	NM_001190374	ENSMUSG00000070469	Adamtsl3	9230119C12Rik|C130057K09|mKIAA1233	ADAMTS-like 3	protein-coding
diff_RLAGL_Vector_cond1_8481	chr6	91729756	91729965	+	4.75022	NA	intron (NM_009320, intron 5 of 14)	intron (NM_009320, intron 5 of 14)	45793	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding
diff_RLAGL_Vector_cond1_8680	chr6	134700946	134701229	+	4.75015	NA	intron (NM_026371, intron 3 of 3)	intron (NM_026371, intron 3 of 3)	60147	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding
diff_RLAGL_Vector_cond1_1517	chr11	16752989	16753199	+	4.74973	NA	intron (NM_207655, intron 1 of 27)	intron (NM_207655, intron 1 of 27)	891	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding
diff_RLAGL_Vector_cond1_8608	chr6	122533036	122533272	+	4.74944	NA	Intergenic	Intergenic	19478	NM_015776	50530	Mm.41931	NM_015776	ENSMUSG00000030116	Mfap5	MAGP-2	microfibrillar associated protein 5	protein-coding
diff_RLAGL_Vector_cond1_6099	chr2	177464595	177464986	+	4.74931	NA	promoter-TSS (NM_001177568)	promoter-TSS (NM_001177568)	48	NM_001177568	628308	Mm.460436	NM_001177568		Gm14420	OTTMUSG00000016588	predicted gene 14420	protein-coding
diff_RLAGL_Vector_cond1_8029	chr5	135186768	135186979	+	4.74872	NA	promoter-TSS (NM_011714)	promoter-TSS (NM_011714)	-450	NM_011714	22385	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding
diff_RLAGL_Vector_cond1_7896	chr5	108132572	108132796	+	4.74841	NA	promoter-TSS (NM_028876)	promoter-TSS (NM_028876)	-93	NM_028876	73130	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik	transmembrane emp24 protein transport domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_997	chr10	38114209	38114522	+	4.74827	NA	Intergenic	RMER15|LTR|ERVL	-61409	NR_131035	75877	Mm.402094	NR_131035		4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA
diff_RLAGL_Vector_cond1_732	chr1	180339210	180339534	+	4.74782	NA	intron (NM_001081175, intron 2 of 7)	PB1D10|SINE|Alu	-8823	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
diff_RLAGL_Vector_cond1_1183	chr10	81496374	81496573	+	4.74606	NA	promoter-TSS (NM_134009)	promoter-TSS (NM_134009)	-110	NM_134009	103425	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin homolog (zebrafish)	protein-coding
diff_RLAGL_Vector_cond1_3078	chr14	33447383	33447602	+	4.74436	NA	promoter-TSS (NM_016700)	promoter-TSS (NM_016700)	-334	NM_001310453	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding
diff_RLAGL_Vector_cond1_8149	chr6	6217167	6217374	+	4.74403	NA	promoter-TSS (NM_015829)	promoter-TSS (NM_015829)	-97	NM_001177572	50799	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding
diff_RLAGL_Vector_cond1_2209	chr12	44268771	44269050	+	4.74399	NA	promoter-TSS (NM_026164)	promoter-TSS (NM_026164)	-244	NM_026164	67452	Mm.54126	NM_026164		Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding
diff_RLAGL_Vector_cond1_4045	chr16	57092846	57093074	+	4.74396	NA	Intergenic	Intergenic	-21614	NM_183281	69457	Mm.58105	NM_183281	ENSMUSG00000046748	Tmem45a2	2310005G13Rik	transmembrane protein 45A2	protein-coding
diff_RLAGL_Vector_cond1_5445	chr2	48544566	48544856	+	4.74272	NA	Intergenic	Intergenic	-269398	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
diff_RLAGL_Vector_cond1_1142	chr10	78169570	78169890	+	4.74212	NA	promoter-TSS (NM_138601)	promoter-TSS (NM_138601)	38	NM_138601	28295	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding
diff_RLAGL_Vector_cond1_6594	chr3	127851395	127851848	+	4.74135	NA	Intergenic	Intergenic	-14129	NM_145964	211556	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding
diff_RLAGL_Vector_cond1_60	chr1	16519269	16519471	+	4.74123	NA	promoter-TSS (NM_001111272)	promoter-TSS (NM_001111272)	-68	NM_025303	29819	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen (RNA binding protein) homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8446	chr6	87294852	87295170	+	4.74116	NA	intron (NM_054041, intron 3 of 17)	intron (NM_054041, intron 3 of 17)	40764	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding
diff_RLAGL_Vector_cond1_4485	chr17	53570410	53570720	+	4.73897	NA	intron (NM_020005, intron 1 of 17)	intron (NM_020005, intron 1 of 17)	3594	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding
diff_RLAGL_Vector_cond1_8036	chr5	135778272	135778580	+	4.73710	NA	promoter-TSS (NM_029659)	promoter-TSS (NM_029659)	-41	NM_001289557	76571	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding
diff_RLAGL_Vector_cond1_4748	chr18	10935767	10936066	+	4.73660	NA	Intergenic	Intergenic	-116594	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding
diff_RLAGL_Vector_cond1_1583	chr11	31386709	31386911	+	4.73422	NA	Intergenic	Intergenic	-16749	NM_011491	20856	Mm.32506	NM_011491		Stc2	AW125853|Stc2l|mustc2	stanniocalcin 2	protein-coding
diff_RLAGL_Vector_cond1_10368	chr9	122188785	122189070	+	4.73403	NA	intron (NM_133979, intron 12 of 12)	intron (NM_133979, intron 12 of 12)	71661	NM_133741	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding
diff_RLAGL_Vector_cond1_8931	chr7	40177714	40177922	+	4.73392	NA	Intergenic	Intergenic	-496919	NR_045504	71029	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA
diff_RLAGL_Vector_cond1_7593	chr5	24908695	24909059	+	4.73331	NA	promoter-TSS (NM_001170556)	promoter-TSS (NM_001170556)	-368	NM_001170556	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding
diff_RLAGL_Vector_cond1_2002	chr11	119134573	119134991	+	4.73314	NA	Intergenic	Intergenic	19355	NR_105899	102465563		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA
diff_RLAGL_Vector_cond1_8224	chr6	24527554	24527874	+	4.73293	NA	promoter-TSS (NM_026614)	promoter-TSS (NM_026614)	-27	NM_026614	68202	Mm.275780	NM_026614		Ndufa5	2900002J19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	protein-coding
diff_RLAGL_Vector_cond1_8822	chr7	12949983	12950184	+	4.73269	NA	Intergenic	Intergenic	-15781	NM_178732	243834	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding
diff_RLAGL_Vector_cond1_9237	chr7	127421693	127422182	+	4.73221	NA	promoter-TSS (NM_026999)	promoter-TSS (NM_026999)	97	NM_026999	69234	Mm.20301	NM_026999	ENSMUSG00000045251	Zfp688	2810407K09Rik|AI326029	zinc finger protein 688	protein-coding
diff_RLAGL_Vector_cond1_5798	chr2	133511142	133511342	+	4.73106	NA	Intergenic	Intergenic	-40917	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding
diff_RLAGL_Vector_cond1_3449	chr15	9132763	9132971	+	4.73062	NA	intron (NM_001285980, intron 2 of 9)	intron (NM_001285980, intron 2 of 9)	7587	NM_013787	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding
diff_RLAGL_Vector_cond1_7471	chr4	152199672	152200008	+	4.73029	NA	promoter-TSS (NM_001146058)	promoter-TSS (NM_001146058)	-4	NM_001146058	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding
diff_RLAGL_Vector_cond1_5052	chr19	4927894	4928254	+	4.72995	NA	intron (NM_133803, intron 1 of 17)	intron (NM_133803, intron 1 of 17)	213	NM_133803	75221	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324	dipeptidylpeptidase 3	protein-coding
diff_RLAGL_Vector_cond1_5218	chr19	55593301	55593651	+	4.72981	NA	intron (NM_001293686, intron 7 of 7)	intron (NM_001293686, intron 7 of 7)	108728	NR_045318	77594	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA
diff_RLAGL_Vector_cond1_6637	chr3	136669890	136670108	+	4.72814	NA	promoter-TSS (NM_008913)	promoter-TSS (NM_008913)	-67	NM_008913	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding
diff_RLAGL_Vector_cond1_6073	chr2	172901341	172901725	+	4.72803	NA	intron (NM_007557, intron 2 of 6)	intron (NM_007557, intron 2 of 6)	38788	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding
diff_RLAGL_Vector_cond1_5899	chr2	147688846	147689084	+	4.72799	NA	Intergenic	Intergenic	-21728	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA
diff_RLAGL_Vector_cond1_3348	chr14	111675613	111676207	+	4.72771	NA	intron (NM_198865, intron 1 of 1)	CpG	795	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding
diff_RLAGL_Vector_cond1_6749	chr3	154723318	154723540	+	4.72645	NA	intron (NM_175176, intron 3 of 6)	MT2A|LTR|ERVL	12296	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
diff_RLAGL_Vector_cond1_3095	chr14	37123448	37123777	+	4.72631	NA	intron (NM_001199122, intron 8 of 8)	RLTR17D_Mm|LTR|ERVK	11527	NM_001199122	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
diff_RLAGL_Vector_cond1_6427	chr3	84657268	84657584	+	4.72560	NA	Intergenic	Intergenic	-8766	NM_177260	320782	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding
diff_RLAGL_Vector_cond1_9490	chr8	40862162	40862537	+	4.72417	NA	promoter-TSS (NM_001044740)	promoter-TSS (NM_001044740)	-18	NM_007514	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding
diff_RLAGL_Vector_cond1_959	chr10	30712550	30712811	+	4.72394	NA	intron (NM_172495, intron 3 of 15)	intron (NM_172495, intron 3 of 15)	-56813	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding
diff_RLAGL_Vector_cond1_9452	chr8	33517155	33517494	+	4.72394	NA	Intergenic	CpG	33013	NR_033589	628431	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo
diff_RLAGL_Vector_cond1_9573	chr8	61737405	61737771	+	4.72371	NA	intron (NM_001081390, intron 2 of 19)	intron (NM_001081390, intron 2 of 19)	22510	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding
diff_RLAGL_Vector_cond1_74	chr1	20890412	20890734	+	4.72361	NA	promoter-TSS (NM_028829)	promoter-TSS (NM_028829)	-49	NM_028829	74229	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding
diff_RLAGL_Vector_cond1_6502	chr3	102715066	102715276	+	4.72360	NA	Intergenic	Intergenic	-19599	NM_027533	70747	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding
diff_RLAGL_Vector_cond1_2819	chr13	74564037	74564294	+	4.72296	NA	Intergenic	Intergenic	-70215	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding
diff_RLAGL_Vector_cond1_5454	chr2	49811353	49811637	+	4.72241	NA	intron (NM_027990, intron 1 of 9)	MIR3|SINE|MIR	23809	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding
diff_RLAGL_Vector_cond1_2214	chr12	45074164	45074591	+	4.72231	NA	5' UTR (NM_144552, exon 1 of 6)	5' UTR (NM_144552, exon 1 of 6)	106	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
diff_RLAGL_Vector_cond1_6717	chr3	149274066	149274271	+	4.72228	NA	promoter-TSS (NR_040591)	promoter-TSS (NR_040591)	-569	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
diff_RLAGL_Vector_cond1_4670	chr17	87635829	87636071	+	4.72160	NA	promoter-TSS (NM_008532)	promoter-TSS (NM_008532)	-29	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_7631	chr5	34513898	34514117	+	4.71797	NA	promoter-TSS (NM_139064)	promoter-TSS (NM_139064)	-28	NM_139064	231130	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_8478	chr6	91440561	91440843	+	4.71782	NA	promoter-TSS (NR_038153)	promoter-TSS (NR_038153)	152	NR_045980	75787	Mm.30842	NR_045980	ENSMUSG00000097693	4930471M09Rik	4930427C17Rik	RIKEN cDNA 4930471M09 gene	ncRNA
diff_RLAGL_Vector_cond1_7728	chr5	52470726	52471104	+	4.71735	NA	intron (NM_001256059, intron 1 of 11)	intron (NM_001256059, intron 1 of 11)	628	NM_001256059	100503884	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding
diff_RLAGL_Vector_cond1_4204	chr16	93615276	93615520	+	4.71656	NA	Intergenic	Intergenic	7561	NM_007620	12408	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding
diff_RLAGL_Vector_cond1_2976	chr13	119408917	119409121	+	4.71577	NA	promoter-TSS (NM_008710)	promoter-TSS (NM_008710)	-8	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding
diff_RLAGL_Vector_cond1_10211	chr9	89827067	89827495	+	4.71432	NA	intron (NR_040735, intron 1 of 5)	intron (NR_040735, intron 1 of 5)	762	NR_040735	74700	Mm.159306	NR_040735	ENSMUSG00000098627	4930524O08Rik	-	RIKEN cDNA 4930524O08 gene	ncRNA
diff_RLAGL_Vector_cond1_4784	chr18	22649598	22649835	+	4.71432	NA	Intergenic	Intergenic	304627	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2152	chr12	30943270	30943886	+	4.71409	NA	intron (NM_001289480, intron 7 of 8)	(TC)n|Simple_repeat|Simple_repeat	31909	NM_001289480	24057	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding
diff_RLAGL_Vector_cond1_8195	chr6	17709506	17709718	+	4.71382	NA	intron (NM_001289625, intron 1 of 15)	intron (NM_001289625, intron 1 of 15)	15618	NM_001289625	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
diff_RLAGL_Vector_cond1_2707	chr13	59585069	59585337	+	4.71350	NA	promoter-TSS (NR_045633)	promoter-TSS (NR_045633)	20	NR_045633	319469	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA
diff_RLAGL_Vector_cond1_5665	chr2	103336713	103336972	+	4.71286	NA	Intergenic	Intergenic	-33646	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding
diff_RLAGL_Vector_cond1_4220	chr16	97165487	97165774	+	4.71277	NA	intron (NM_031174, intron 1 of 32)	intron (NM_031174, intron 1 of 32)	5105	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_6131	chr2	181864127	181864534	+	4.71253	NA	promoter-TSS (NM_025901)	promoter-TSS (NM_025901)	-30	NM_025901	67005	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding
diff_RLAGL_Vector_cond1_2118	chr12	21227463	21227670	+	4.71205	NA	intron (NM_001135192, intron 13 of 28)	intron (NM_001135192, intron 13 of 28)	58671	NM_008403	16413	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_8371	chr6	64649770	64650005	+	4.71204	NA	intron (NM_008167, intron 14 of 15)	intron (NM_008167, intron 14 of 15)	-79259	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_3901	chr16	22857368	22857871	+	4.71133	NA	promoter-TSS (NM_026400)	promoter-TSS (NM_026400)	50	NM_001081368	70573	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7803	chr5	77460424	77460669	+	4.71108	NA	Intergenic	Intergenic	-4942	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
diff_RLAGL_Vector_cond1_7150	chr4	98857415	98857770	+	4.71106	NA	Intergenic	Intergenic	-40055	NM_172872	242553	Mm.440211	NM_172872	ENSMUSG00000035407	Kank4	AU021071|Ankrd38|BC060737|C130031J23	KN motif and ankyrin repeat domains 4	protein-coding
diff_RLAGL_Vector_cond1_5821	chr2	136678625	136678849	+	4.71050	NA	Intergenic	CpG	-34713	NM_011428	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding
diff_RLAGL_Vector_cond1_9437	chr8	26833305	26833579	+	4.70937	NA	Intergenic	Intergenic	-9019	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA
diff_RLAGL_Vector_cond1_2529	chr13	5917492	5917703	+	4.70921	NA	Intergenic	Intergenic	56108	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding
diff_RLAGL_Vector_cond1_1207	chr10	85161913	85162146	+	4.70871	NA	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	23025	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding
diff_RLAGL_Vector_cond1_10346	chr9	119445142	119445345	+	4.70836	NA	intron (NM_172456, intron 1 of 5)	intron (NM_172456, intron 1 of 5)	320	NM_001172136	208194	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding
diff_RLAGL_Vector_cond1_8251	chr6	32328168	32328388	+	4.70799	NA	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-182863	NR_040277	319849	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA
diff_RLAGL_Vector_cond1_3988	chr16	44716895	44717110	+	4.70623	NA	Intergenic	Intergenic	-7299	NM_145972	212547	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding
diff_RLAGL_Vector_cond1_1485	chr11	8572921	8573140	+	4.70570	NA	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	91505	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding
diff_RLAGL_Vector_cond1_1170	chr10	80678227	80678527	+	4.70555	NA	Intergenic	Intergenic	-2084	NM_021462	17347	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding
diff_RLAGL_Vector_cond1_8762	chr6	145256017	145256492	+	4.70488	NA	Intergenic	Intergenic	5702	NR_045598	100039495	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	OTTMUSG00000025463	predicted gene 15706	ncRNA
diff_RLAGL_Vector_cond1_5461	chr2	51682220	51682431	+	4.70388	NA	intron (NR_040639, intron 2 of 6)	intron (NR_040639, intron 2 of 6)	49684	NR_040639	433426	Mm.244381	NR_040639	ENSMUSG00000085014	Gm13490	OTTMUSG00000012405	predicted gene 13490	ncRNA
diff_RLAGL_Vector_cond1_2798	chr13	70839880	70840190	+	4.70267	NA	intron (NM_172053, intron 2 of 22)	intron (NM_172053, intron 2 of 22)	1775	NM_172053	271127	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding
diff_RLAGL_Vector_cond1_2504	chr12	119387976	119388222	+	4.70249	NA	Intergenic	Intergenic	-55311	NM_001163136	238455	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding
diff_RLAGL_Vector_cond1_3619	chr15	59728266	59728525	+	4.70239	NA	Intergenic	Intergenic	66564	NR_045076	100503021	Mm.402924	NR_045076		Gm19510	-	predicted gene, 19510	ncRNA
diff_RLAGL_Vector_cond1_1493	chr11	9666748	9667093	+	4.70217	NA	intron (NM_178259, intron 59 of 61)	intron (NM_178259, intron 59 of 61)	474978	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding
diff_RLAGL_Vector_cond1_6552	chr3	116807863	116808428	+	4.70208	NA	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	21	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding
diff_RLAGL_Vector_cond1_3798	chr15	96953648	96953891	+	4.70085	NA	Intergenic	Intergenic	102187	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding
diff_RLAGL_Vector_cond1_2449	chr12	111165882	111166202	+	4.70055	NA	promoter-TSS (NM_011632)	promoter-TSS (NM_011632)	-328	NM_001286122	22031	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding
diff_RLAGL_Vector_cond1_270	chr1	74332391	74332720	+	4.69913	NA	promoter-TSS (NM_019999)	promoter-TSS (NM_019999)	-55	NM_019999	56695	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding
diff_RLAGL_Vector_cond1_3370	chr14	119989624	119989951	+	4.69796	NA	Intergenic	Intergenic	52648	NM_001001490	239283	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding
diff_RLAGL_Vector_cond1_6560	chr3	119701162	119701582	+	4.69771	NA	Intergenic	Intergenic	82016	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_5403	chr2	34904938	34905507	+	4.69713	NA	intron (NM_028716, intron 6 of 14)	intron (NM_028716, intron 6 of 14)	8754	NM_028716	74016	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding
diff_RLAGL_Vector_cond1_7785	chr5	73782413	73782692	+	4.69709	NA	Intergenic	Intergenic	131172	NM_178387	73472	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding
diff_RLAGL_Vector_cond1_1696	chr11	62494835	62495037	+	4.69687	NA	intron (NM_001039536, intron 2 of 6)	intron (NM_001039536, intron 2 of 6)	36476	NM_001039536	327942	Mm.390358	NM_199026		Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding
diff_RLAGL_Vector_cond1_10304	chr9	111461294	111462052	+	4.69507	NA	intron (NM_172928, intron 1 of 4)	intron (NM_172928, intron 1 of 4)	22592	NM_172928	245038	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding
diff_RLAGL_Vector_cond1_4743	chr18	10052431	10052829	+	4.69502	NA	Intergenic	MMERGLN-int|LTR|ERV1	-22481	NM_021522	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding
diff_RLAGL_Vector_cond1_8642	chr6	128200500	128200839	+	4.69495	NA	Intergenic	CpG	-16866	NR_077223	330427	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA
diff_RLAGL_Vector_cond1_1107	chr10	70039883	70040084	+	4.69472	NA	Intergenic	MIRb|SINE|MIR	-57138	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_3822	chr15	101173596	101173837	+	4.69472	NA	promoter-TSS (NM_007395)	promoter-TSS (NM_007395)	-409	NM_007395	11479	Mm.308467	NM_007395		Acvr1b	6820432J04|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding
diff_RLAGL_Vector_cond1_1074	chr10	59578329	59578774	+	4.69468	NA	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	38141	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding
diff_RLAGL_Vector_cond1_10622	chrY	11858093	11858335	+	4.69456	NA	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-523775	NM_001199332	100041550	Mm.485768	NM_001199332	ENSMUSG00000095520	Gm20877	-	predicted gene, 20877	protein-coding
diff_RLAGL_Vector_cond1_487	chr1	132417265	132417566	+	4.69443	NA	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	-38	NM_172516	213452	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding
diff_RLAGL_Vector_cond1_5775	chr2	127722636	127722974	+	4.69434	NA	intron (NM_145532, intron 1 of 3)	intron (NM_145532, intron 1 of 3)	7092	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding
diff_RLAGL_Vector_cond1_6356	chr3	63929196	63929501	+	4.69338	NA	promoter-TSS (NM_177856)	promoter-TSS (NM_177856)	37	NM_177856	329659	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding
diff_RLAGL_Vector_cond1_321	chr1	86268951	86269263	+	4.69247	NA	intron (NM_001310702, intron 23 of 24)	intron (NM_001310702, intron 23 of 24)	-34114	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding
diff_RLAGL_Vector_cond1_8564	chr6	114916693	114916953	+	4.69073	NA	intron (NM_177683, intron 1 of 4)	intron (NM_177683, intron 1 of 4)	4929	NM_177683	232334	Mm.268357	NM_177683		Vgll4	BC048841|VGL-4	vestigial like 4 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8851	chr7	19084307	19084618	+	4.68982	NA	intron (NR_126095, intron 1 of 14)	intron (NR_126095, intron 1 of 14)	613	NM_032418	13400	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding
diff_RLAGL_Vector_cond1_6139	chr3	5219595	5219908	+	4.68950	NA	intron (NM_030708, intron 1 of 10)	CpG	1072	NR_045905	72608	Mm.384359	NR_045905		2700069I18Rik	-	RIKEN cDNA 2700069I18 gene	ncRNA
diff_RLAGL_Vector_cond1_7551	chr5	17271836	17272053	+	4.68933	NA	Intergenic	Intergenic	-204178	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding
diff_RLAGL_Vector_cond1_5093	chr19	14740145	14740615	+	4.68932	NA	Intergenic	MTD|LTR|ERVL-MaLR	-142197	NM_001302950	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4, homolog of Drosophila E(spl)	protein-coding
diff_RLAGL_Vector_cond1_7004	chr4	58912084	58912412	+	4.68811	NA	intron (NM_172381, intron 1 of 48)	CpG	477	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding
diff_RLAGL_Vector_cond1_5973	chr2	157367556	157367817	+	4.68802	NA	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	92	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding
diff_RLAGL_Vector_cond1_6404	chr3	77870301	77870501	+	4.68703	NA	Intergenic	RLTR25A|LTR|ERVK	1274486	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
diff_RLAGL_Vector_cond1_4777	chr18	20749535	20749756	+	4.68617	NA	Intergenic	Intergenic	-3241	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding
diff_RLAGL_Vector_cond1_6296	chr3	52630749	52631095	+	4.68558	NA	Intergenic	Intergenic	-108802	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA
diff_RLAGL_Vector_cond1_7328	chr4	133440491	133440697	+	4.68553	NA	Intergenic	Intergenic	-39539	NM_175307	100342	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding
diff_RLAGL_Vector_cond1_1886	chr11	101732706	101733133	+	4.68506	NA	promoter-TSS (NM_144831)	promoter-TSS (NM_144831)	-37	NM_144831	217207	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding
diff_RLAGL_Vector_cond1_2322	chr12	79029286	79029712	+	4.68494	NA	intron (NM_181073, intron 1 of 28)	CpG	336	NM_181073	211945	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding
diff_RLAGL_Vector_cond1_1657	chr11	53839635	53839874	+	4.68318	NA	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	19502	NR_033332	622459	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115|OTTMUSG00000005650	predicted gene 12216	ncRNA
diff_RLAGL_Vector_cond1_3818	chr15	100738468	100738683	+	4.68283	NA	Intergenic	Intergenic	-5838	NR_045782	619313	Mm.123436	NR_045781		I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA
diff_RLAGL_Vector_cond1_8238	chr6	29768187	29768388	+	4.68214	NA	promoter-TSS (NM_021414)	promoter-TSS (NM_021414)	-156	NM_021414	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding
diff_RLAGL_Vector_cond1_6887	chr4	26128136	26128350	+	4.68114	NA	Intergenic	Lx8|LINE|L1	218409	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding
diff_RLAGL_Vector_cond1_9054	chr7	72501379	72501603	+	4.68035	NA	Intergenic	Intergenic	-194896	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding
diff_RLAGL_Vector_cond1_2941	chr13	114419354	114419697	+	4.67890	NA	Intergenic	L1M5|LINE|L1	-31431	NM_010887	17993	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding
diff_RLAGL_Vector_cond1_8212	chr6	22326993	22327279	+	4.67889	NA	intron (NM_138587, intron 5 of 9)	intron (NM_138587, intron 5 of 9)	28945	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding
diff_RLAGL_Vector_cond1_6821	chr4	11102807	11103275	+	4.67750	NA	Intergenic	LTR33A_|LTR|ERVL	-26836	NM_001085493	76947	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding
diff_RLAGL_Vector_cond1_7354	chr4	135573303	135573627	+	4.67745	NA	5' UTR (NM_001013756, exon 1 of 16)	5' UTR (NM_001013756, exon 1 of 16)	155	NM_001013756	230824	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead-like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5812	chr2	135659209	135659475	+	4.67622	NA	Intergenic	CpG	-76122	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA
diff_RLAGL_Vector_cond1_10066	chr9	47531396	47531706	+	4.67614	NA	intron (NM_001025600, intron 1 of 8)	CpG	1199	NM_207675	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding
diff_RLAGL_Vector_cond1_10302	chr9	111386198	111386451	+	4.67506	NA	intron (NM_001164659, intron 16 of 21)	intron (NM_001164659, intron 16 of 21)	-52757	NM_172928	245038	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding
diff_RLAGL_Vector_cond1_3106	chr14	46016988	46017227	+	4.67489	NA	Intergenic	Intergenic	-66920	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo
diff_RLAGL_Vector_cond1_1259	chr10	94198976	94199203	+	4.67325	NA	promoter-TSS (NM_025551)	promoter-TSS (NM_025551)	80	NM_025551	66414	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding
diff_RLAGL_Vector_cond1_8266	chr6	37463917	37464138	+	4.67285	NA	Intergenic	Lx8|LINE|L1	-21879	NM_178661	208647	Mm.169929	NM_178661		Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding
diff_RLAGL_Vector_cond1_3474	chr15	12824452	12824789	+	4.67270	NA	promoter-TSS (NM_001130149)	promoter-TSS (NM_001130149)	37	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding
diff_RLAGL_Vector_cond1_9236	chr7	127070942	127071323	+	4.67216	NA	Intergenic	L2c|LINE|L2	-19155	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding
diff_RLAGL_Vector_cond1_10334	chr9	118150186	118150391	+	4.67123	NA	promoter-TSS (NM_026442)	promoter-TSS (NM_026442)	-92	NM_026442	67899	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding
diff_RLAGL_Vector_cond1_143	chr1	39867993	39868235	+	4.67103	NA	Intergenic	Intergenic	-20784	NR_040465	73426	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA
diff_RLAGL_Vector_cond1_10488	chrX	94865545	94865874	+	4.67061	NA	Intergenic	Intergenic	-67420	NR_003292	668171	Mm.426134	NR_003292		Zxda	4933406P09Rik|AW413531	zinc finger, X-linked, duplicated A	pseudo
diff_RLAGL_Vector_cond1_3328	chr14	105262983	105263190	+	4.66985	NA	intron (NM_001190989, intron 1 of 7)	LTR40a|LTR|ERVL	4413	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_2373	chr12	95730343	95730563	+	4.66983	NA	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	38227	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
diff_RLAGL_Vector_cond1_10249	chr9	99243610	99243812	+	4.66912	NA	intron (NM_023873, intron 1 of 17)	intron (NM_023873, intron 1 of 17)	243	NM_023873	68121	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding
diff_RLAGL_Vector_cond1_1414	chr10	125939064	125939305	+	4.66805	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-27035	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
diff_RLAGL_Vector_cond1_9033	chr7	67759573	67759818	+	4.66765	NA	promoter-TSS (NM_183312)	promoter-TSS (NM_183312)	47	NM_207663	233335	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding
diff_RLAGL_Vector_cond1_398	chr1	105549677	105550022	+	4.66747	NA	intron (NM_013784, intron 28 of 30)	intron (NM_013784, intron 28 of 30)	113827	NM_013784	27392	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding
diff_RLAGL_Vector_cond1_5354	chr2	25402631	25403422	+	4.66730	NA	promoter-TSS (NM_008721)	promoter-TSS (NM_008721)	-24	NM_008721	18146	Mm.1131	NM_008721	ENSMUSG00000015094	Npdc1	AI314472|NPDC-1	neural proliferation, differentiation and control 1	protein-coding
diff_RLAGL_Vector_cond1_7849	chr5	98446803	98447208	+	4.66724	NA	intron (NM_001024614, intron 2 of 5)	L1MC|LINE|L1	28659	NR_030484	735265		NR_030484	ENSMUSG00000105814	Mir703	Mirn703|mir-703|mmu-mir-703	microRNA 703	ncRNA
diff_RLAGL_Vector_cond1_5128	chr19	27316876	27317192	+	4.66653	NA	Intergenic	Intergenic	-5585	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding
diff_RLAGL_Vector_cond1_9334	chr8	3630934	3631254	+	4.66639	NA	promoter-TSS (NM_011503)	promoter-TSS (NM_011503)	-66	NM_011503	20911	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_3741	chr15	85336222	85336490	+	4.66523	NA	promoter-TSS (NM_016843)	promoter-TSS (NM_016843)	-25	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding
diff_RLAGL_Vector_cond1_7135	chr4	95772020	95772237	+	4.66517	NA	intron (NM_001113412, intron 8 of 15)	intron (NM_001113412, intron 8 of 15)	192707	NM_029347	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding
diff_RLAGL_Vector_cond1_8402	chr6	72362383	72362614	+	4.66434	NA	promoter-TSS (NM_025607)	promoter-TSS (NM_025607)	-117	NM_025607	66510	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding
diff_RLAGL_Vector_cond1_8261	chr6	35379818	35380214	+	4.66398	NA	Intergenic	Intergenic	49170	NR_040526	73409	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA
diff_RLAGL_Vector_cond1_8049	chr5	137569733	137569932	+	4.66373	NA	promoter-TSS (NM_015799)	promoter-TSS (NM_015799)	-8	NM_015799	50765	Mm.21757	NM_015799	ENSMUSG00000029716	Tfr2	Trfr2	transferrin receptor 2	protein-coding
diff_RLAGL_Vector_cond1_3124	chr14	50061766	50062334	+	4.66369	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	22629	NM_146316	258313	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding
diff_RLAGL_Vector_cond1_4997	chr18	80151641	80152019	+	4.66293	NA	promoter-TSS (NM_175028)	promoter-TSS (NM_175028)	-348	NM_175028	240442	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_6196	chr3	20154645	20154959	+	4.66289	NA	intron (NM_013755, intron 1 of 6)	CpG	314	NM_013755	27357	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|Gyg1	glycogenin	protein-coding
diff_RLAGL_Vector_cond1_8383	chr6	66910591	66910918	+	4.66252	NA	intron (NM_001177558, intron 1 of 4)	intron (NM_001177558, intron 1 of 4)	13863	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
diff_RLAGL_Vector_cond1_3295	chr14	100864940	100865193	+	4.66208	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	335003	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding
diff_RLAGL_Vector_cond1_10250	chr9	100452454	100452656	+	4.66201	NA	Intergenic	Intergenic	33918	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding
diff_RLAGL_Vector_cond1_1775	chr11	79273846	79274089	+	4.66135	NA	Intergenic	Intergenic	-19272	NM_019653	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding
diff_RLAGL_Vector_cond1_9225	chr7	125393520	125393988	+	4.66036	NA	Intergenic	CpG	24893	NM_001145759	75861	Mm.349600	NM_001145759	ENSMUSG00000090457	4930571K23Rik	AI428146	RIKEN cDNA 4930571K23 gene	protein-coding
diff_RLAGL_Vector_cond1_2631	chr13	34345181	34345458	+	4.66008	NA	promoter-TSS (NM_001033167)	promoter-TSS (NM_001033167)	-137	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding
diff_RLAGL_Vector_cond1_1398	chr10	122544218	122544586	+	4.65925	NA	Intergenic	Intergenic	25489	NR_040616	319272	Mm.411763	NR_040616		A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA
diff_RLAGL_Vector_cond1_500	chr1	134237501	134237727	+	4.65912	NA	Intergenic	Intergenic	-2157	NM_001282945	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding
diff_RLAGL_Vector_cond1_1660	chr11	54100882	54101322	+	4.65905	NA	intron (NM_001136076, intron 1 of 15)	CpG	178	NM_001136076	18452	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding
diff_RLAGL_Vector_cond1_7703	chr5	48483184	48483465	+	4.65765	NA	promoter-TSS (NM_001199243)	promoter-TSS (NM_001199243)	-668	NM_001199243	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
diff_RLAGL_Vector_cond1_8331	chr6	54759936	54760308	+	4.65644	NA	Intergenic	Intergenic	-56794	NM_199143	387524	Mm.286149	NM_199143		Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding
diff_RLAGL_Vector_cond1_972	chr10	32226454	32226694	+	4.65613	NA	intron (NM_001013411, intron 3 of 6)	Lx5b|LINE|L1	-616849	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
diff_RLAGL_Vector_cond1_3875	chr16	15985124	15985325	+	4.65611	NA	intron (NM_146068, intron 8 of 19)	intron (NM_146068, intron 8 of 19)	97938	NM_007679	12609	Mm.347407	NM_007679		Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding
diff_RLAGL_Vector_cond1_3500	chr15	27506514	27506725	+	4.65501	NA	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	39942	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding
diff_RLAGL_Vector_cond1_9682	chr8	84908742	84908941	+	4.65428	NA	exon (NM_010062, exon 1 of 6)	exon (NM_010062, exon 1 of 6)	217	NM_010062	13423	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding
diff_RLAGL_Vector_cond1_8015	chr5	133542078	133542581	+	4.65385	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-557419	NM_030719	80909	Mm.45218	NM_030719		Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_7884	chr5	104224710	104224966	+	4.65345	NA	Intergenic	RLTR22_Mur|LTR|ERVK	22221	NM_016779	13406	Mm.199008	NM_016779	ENSMUSG00000029307	Dmp1	AV020965|Dmp|PP	dentin matrix protein 1	protein-coding
diff_RLAGL_Vector_cond1_8710	chr6	138350852	138351233	+	4.65312	NA	Intergenic	Intergenic	-72063	NR_126073	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA
diff_RLAGL_Vector_cond1_889	chr10	12869078	12869284	+	4.65281	NA	Intergenic	CpG	-7446	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding
diff_RLAGL_Vector_cond1_8744	chr6	143561665	143561900	+	4.65279	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	89506	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA
diff_RLAGL_Vector_cond1_6039	chr2	168987399	168987699	+	4.65225	NA	Intergenic	MTD|LTR|ERVL-MaLR	9280	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA
diff_RLAGL_Vector_cond1_10131	chr9	66213405	66213675	+	4.65210	NA	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	55314	NM_010019	13143	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding
diff_RLAGL_Vector_cond1_931	chr10	25192765	25192988	+	4.65181	NA	intron (NM_018747, intron 7 of 7)	intron (NM_018747, intron 7 of 7)	106287	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding
diff_RLAGL_Vector_cond1_1653	chr11	53423098	53423450	+	4.65175	NA	promoter-TSS (NM_153069)	promoter-TSS (NM_153069)	-138	NM_153069	259301	Mm.24283	NM_153069	ENSMUSG00000036216	Leap2	leap-2	liver-expressed antimicrobial peptide 2	protein-coding
diff_RLAGL_Vector_cond1_2831	chr13	80886183	80886417	+	4.65143	NA	intron (NM_001042591, intron 1 of 7)	CpG	2878	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4652	chr17	85052403	85052651	+	4.65097	NA	intron (NM_009205, intron 7 of 9)	MTC|LTR|ERVL-MaLR	24180	NM_009205	20532	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding
diff_RLAGL_Vector_cond1_7154	chr4	100095670	100096189	+	4.65067	NA	5' UTR (NM_013845, exon 1 of 9)	5' UTR (NM_013845, exon 1 of 9)	138	NM_013845	26563	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding
diff_RLAGL_Vector_cond1_3018	chr14	16433296	16433615	+	4.65060	NA	intron (NM_001289760, intron 9 of 9)	intron (NM_001289760, intron 9 of 9)	68249	NM_009409	21974	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding
diff_RLAGL_Vector_cond1_5584	chr2	80638681	80638999	+	4.64970	NA	promoter-TSS (NM_027091)	promoter-TSS (NM_027091)	28	NM_027091	69482	Mm.29200	NM_027091		Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding
diff_RLAGL_Vector_cond1_2053	chr12	7977553	7977877	+	4.64882	NA	promoter-TSS (NM_009693)	promoter-TSS (NM_009693)	38	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding
diff_RLAGL_Vector_cond1_1294	chr10	105345845	105346258	+	4.64796	NA	intron (NM_177368, intron 4 of 11)	intron (NM_177368, intron 4 of 11)	228428	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
diff_RLAGL_Vector_cond1_1925	chr11	109298040	109298314	+	4.64760	NA	promoter-TSS (NM_011268)	promoter-TSS (NM_011268)	4	NM_011268	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding
diff_RLAGL_Vector_cond1_6905	chr4	29863428	29863632	+	4.64658	NA	Intergenic	ORR1C1|LTR|ERVL-MaLR	-801066	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
diff_RLAGL_Vector_cond1_3974	chr16	42907279	42907549	+	4.64641	NA	promoter-TSS (NM_001285805)	promoter-TSS (NM_001285805)	-231	NM_001285805	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding
diff_RLAGL_Vector_cond1_8912	chr7	35555236	35555484	+	4.64598	NA	exon (NM_033080, exon 1 of 3)	exon (NM_033080, exon 1 of 3)	568	NM_033080	110959	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding
diff_RLAGL_Vector_cond1_9908	chr9	9302815	9303122	+	4.64582	NA	Intergenic	Intergenic	-63955	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding
diff_RLAGL_Vector_cond1_30	chr1	8936095	8936327	+	4.64524	NA	intron (NM_001290390, intron 3 of 20)	RLTR9E|LTR|ERVK	363666	NM_027671	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_5381	chr2	30985257	30985567	+	4.64469	NA	intron (NM_028846, intron 1 of 24)	intron (NM_028846, intron 1 of 24)	3133	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding
diff_RLAGL_Vector_cond1_2659	chr13	44730424	44730663	+	4.64383	NA	promoter-TSS (NM_021878)	promoter-TSS (NM_021878)	-231	NM_001205044	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding
diff_RLAGL_Vector_cond1_681	chr1	172709853	172710184	+	4.64382	NA	Intergenic	Intergenic	11962	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding
diff_RLAGL_Vector_cond1_2813	chr13	73971238	73971474	+	4.64323	NA	intron (NM_027704, intron 2 of 9)	intron (NM_027704, intron 2 of 9)	7494	NM_027704	71164	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding
diff_RLAGL_Vector_cond1_3134	chr14	53662805	53663069	+	4.64283	NA	Intergenic	Intergenic	590992	NM_010015	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding
diff_RLAGL_Vector_cond1_6330	chr3	59063495	59063895	+	4.64230	NA	intron (NM_177855, intron 4 of 43)	MTB_Mm|LTR|ERVL-MaLR	38126	NM_173398	229323	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding
diff_RLAGL_Vector_cond1_2232	chr12	51196887	51197097	+	4.64209	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-151238	NM_001167964	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding
diff_RLAGL_Vector_cond1_719	chr1	178528772	178529073	+	4.64190	NA	promoter-TSS (NM_001161665)	promoter-TSS (NM_001161665)	-203	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding
diff_RLAGL_Vector_cond1_2286	chr12	69361472	69361679	+	4.64176	NA	Intergenic	CpG	-4399	NM_025441	66244	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding
diff_RLAGL_Vector_cond1_4948	chr18	70437516	70437747	+	4.64039	NA	Intergenic	Intergenic	-34823	NM_029019	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_3794	chr15	96286574	96286827	+	4.63908	NA	promoter-TSS (NM_175251)	promoter-TSS (NM_175251)	-822	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding
diff_RLAGL_Vector_cond1_1683	chr11	60699687	60700011	+	4.63797	NA	5' UTR (NM_001159405, exon 1 of 22)	5' UTR (NM_001159405, exon 1 of 22)	159	NM_008502	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1555	chr11	24472698	24472937	+	4.63794	NA	Intergenic	Intergenic	-9092	NR_045857	71316	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA
diff_RLAGL_Vector_cond1_6253	chr3	36862684	36863314	+	4.63662	NA	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-107	NM_172679	229227	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding
diff_RLAGL_Vector_cond1_2612	chr13	29163296	29163567	+	4.63634	NA	Intergenic	Intergenic	147176	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
diff_RLAGL_Vector_cond1_7879	chr5	103760568	103760828	+	4.63580	NA	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	6125	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding
diff_RLAGL_Vector_cond1_4496	chr17	55892001	55892347	+	4.63520	NA	promoter-TSS (NM_145490)	promoter-TSS (NM_145490)	81	NM_145490	224893	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding
diff_RLAGL_Vector_cond1_7697	chr5	47502833	47503086	+	4.63256	NA	Intergenic	Intergenic	-480196	NM_178804	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5957	chr2	154569880	154570105	+	4.63249	NA	promoter-TSS (NM_007891)	promoter-TSS (NM_007891)	-100	NM_007891	13555	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|mKIAA4009	E2F transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_2143	chr12	28589567	28589799	+	4.63209	NA	Intergenic	Intergenic	-7200	NM_053156	94041	Mm.84927	NM_053156	ENSMUSG00000020636	Allc	1700012B22Rik|Alc	allantoicase	protein-coding
diff_RLAGL_Vector_cond1_7674	chr5	43423133	43423336	+	4.63175	NA	Intergenic	Intergenic	-92335	NM_001135172	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding
diff_RLAGL_Vector_cond1_4445	chr17	46555907	46556365	+	4.63128	NA	promoter-TSS (NM_020493)	promoter-TSS (NM_020493)	26	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding
diff_RLAGL_Vector_cond1_1808	chr11	87426638	87427088	+	4.62929	NA	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-728	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding
diff_RLAGL_Vector_cond1_5618	chr2	90612211	90612571	+	4.62876	NA	Intergenic	Intergenic	-31744	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding
diff_RLAGL_Vector_cond1_7948	chr5	115731947	115732447	+	4.62850	NA	promoter-TSS (NM_001080808)	promoter-TSS (NM_001080808)	-638	NM_001080808	75665	Mm.233914	NM_001080808	ENSMUSG00000041609	Ccdc64	2210403N09Rik|BICDR-1	coiled-coil domain containing 64	protein-coding
diff_RLAGL_Vector_cond1_9557	chr8	57487737	57487976	+	4.62788	NA	promoter-TSS (NR_126555)	promoter-TSS (NR_126555)	4	NM_021788	60406	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding
diff_RLAGL_Vector_cond1_10085	chr9	52041702	52042044	+	4.62711	NA	intron (NR_023357, intron 1 of 2)	intron (NR_023357, intron 1 of 2)	-5277	NM_001104616	19684	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding
diff_RLAGL_Vector_cond1_6568	chr3	122047497	122047705	+	4.62707	NA	intron (NM_007378, intron 1 of 49)	intron (NM_007378, intron 1 of 49)	3141	NM_007378	11304	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding
diff_RLAGL_Vector_cond1_3547	chr15	41948731	41949078	+	4.62675	NA	Intergenic	Intergenic	-79184	NM_175456	223513	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding
diff_RLAGL_Vector_cond1_8422	chr6	82125202	82125407	+	4.62645	NA	Intergenic	Intergenic	83676	NM_145570	232146	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_1410	chr10	125764448	125764803	+	4.62563	NA	Intergenic	LTR41B|LTR|ERVL	-201594	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
diff_RLAGL_Vector_cond1_8210	chr6	22010378	22010591	+	4.62517	NA	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	24574	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8840	chr7	16874940	16875304	+	4.62485	NA	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	-195	NM_001081655	629378	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dapper homolog 3, antagonist of beta-catenin (xenopus)	protein-coding
diff_RLAGL_Vector_cond1_7290	chr4	126236881	126237086	+	4.62463	NA	exon (NM_001145970, exon 7 of 17)	exon (NM_001145970, exon 7 of 17)	19336	NM_001145970	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_5111	chr19	21051900	21052225	+	4.62439	NA	Intergenic	Intergenic	-52648	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA
diff_RLAGL_Vector_cond1_9157	chr7	102967351	102967563	+	4.62428	NA	Intergenic	RMER16A2|LTR|ERVK	2355	NM_001001805	258248	Mm.377392	NM_001001805	ENSMUSG00000073962	Olfr576	MOR8-5|Olfr576-ps1	olfactory receptor 576	protein-coding
diff_RLAGL_Vector_cond1_2874	chr13	92355010	92355267	+	4.62357	NA	promoter-TSS (NM_010829)	promoter-TSS (NM_010829)	-135	NM_010829	17686	Mm.343101	NM_010829	ENSMUSG00000014850	Msh3	D13Em1|Rep-3|Rep3	mutS homolog 3 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_4856	chr18	43983166	43983418	+	4.62273	NA	intron (NM_001081180, intron 7 of 31)	intron (NM_001081180, intron 7 of 31)	20051	NM_001081180	72432	Mm.35369	NM_001081180	ENSMUSG00000055561	Spink5	2310065D10Rik|AV238912|LEKT1|LETK1|VAKT1	serine peptidase inhibitor, Kazal type 5	protein-coding
diff_RLAGL_Vector_cond1_1185	chr10	81643339	81643931	+	4.62262	NA	exon (NM_027480, exon 17 of 20)	exon (NM_027480, exon 17 of 20)	-5434	NM_001142963	100233208	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	ENSMUSG00000074860	predicted gene 10778	protein-coding
diff_RLAGL_Vector_cond1_8950	chr7	44360273	44360674	+	4.62247	NA	intron (NM_027049, intron 5 of 5)	CpG	14557	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding
diff_RLAGL_Vector_cond1_4614	chr17	78150839	78151058	+	4.62246	NA	Intergenic	Intergenic	-49300	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
diff_RLAGL_Vector_cond1_9468	chr8	36094540	36094847	+	4.62222	NA	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	-135	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	D8Ertd82e	9830148H23|NACK|Sgk223|mFLJ00269	DNA segment, Chr 8, ERATO Doi 82, expressed	protein-coding
diff_RLAGL_Vector_cond1_1651	chr11	53308590	53308833	+	4.62067	NA	Intergenic	Intergenic	-8232	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding
diff_RLAGL_Vector_cond1_10095	chr9	57262268	57262841	+	4.62058	NA	promoter-TSS (NM_028820)	promoter-TSS (NM_028820)	45	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding
diff_RLAGL_Vector_cond1_752	chr1	183134597	183134798	+	4.61943	NA	intron (NM_026866, intron 4 of 9)	intron (NM_026866, intron 4 of 9)	12860	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_857	chr10	7159069	7159593	+	4.61939	NA	intron (NM_172546, intron 2 of 12)	intron (NM_172546, intron 2 of 12)	52906	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding
diff_RLAGL_Vector_cond1_3621	chr15	59787154	59787392	+	4.61885	NA	Intergenic	Intergenic	7686	NR_045076	100503021	Mm.402924	NR_045076		Gm19510	-	predicted gene, 19510	ncRNA
diff_RLAGL_Vector_cond1_2377	chr12	98674694	98675064	+	4.61883	NA	Intergenic	Intergenic	46737	NM_001289574	104871	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding
diff_RLAGL_Vector_cond1_4227	chr16	98082480	98082843	+	4.61828	NA	promoter-TSS (NR_015491)	promoter-TSS (NR_015491)	-222	NR_015491	320586	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA
diff_RLAGL_Vector_cond1_2290	chr12	70452947	70453531	+	4.61785	NA	promoter-TSS (NM_028339)	promoter-TSS (NM_028339)	85	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding
diff_RLAGL_Vector_cond1_5556	chr2	75491764	75492037	+	4.61752	NA	Intergenic	Intergenic	-47721	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA
diff_RLAGL_Vector_cond1_5854	chr2	140715876	140716099	+	4.61732	NA	intron (NM_001013802, intron 3 of 18)	Lx7|LINE|L1	-44511	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_9403	chr8	18996552	18996807	+	4.61702	NA	Intergenic	MTE-int|LTR|ERVL-MaLR	-5624	NM_181683	353320	Mm.270483	NM_181683	ENSMUSG00000053695	Defb37	BD-37	defensin beta 37	protein-coding
diff_RLAGL_Vector_cond1_9724	chr8	95254988	95255196	+	4.61694	NA	intron (NM_001195413, intron 25 of 32)	intron (NM_001195413, intron 25 of 32)	51493	NM_145601	333329	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding
diff_RLAGL_Vector_cond1_1095	chr10	67912559	67912775	+	4.61613	NA	promoter-TSS (NM_178679)	promoter-TSS (NM_178679)	-5	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding
diff_RLAGL_Vector_cond1_8170	chr6	12060520	12060726	+	4.61481	NA	intron (NM_001168382, intron 17 of 17)	Tigger5|DNA|TcMar-Tigger	48957	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo
diff_RLAGL_Vector_cond1_6503	chr3	102735261	102735481	+	4.61468	NA	promoter-TSS (NR_040588)	promoter-TSS (NR_040588)	46	NR_040588	78491	Mm.243766	NR_040588	ENSMUSG00000086745	Tspan2os	2410057H14Rik	tetraspanin 2, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_1528	chr11	19018850	19019144	+	4.61393	NA	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-28	NM_010789	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_3033	chr14	20181420	20181656	+	4.61298	NA	5' UTR (NM_021542, exon 1 of 5)	5' UTR (NM_021542, exon 1 of 5)	244	NM_021542	16529	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding
diff_RLAGL_Vector_cond1_9995	chr9	31998907	31999232	+	4.61292	NA	Intergenic	Intergenic	-85784	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_5979	chr2	158306240	158306709	+	4.61116	NA	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-19	NM_008489	16803	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding
diff_RLAGL_Vector_cond1_6366	chr3	67573131	67573342	+	4.61114	NA	Intergenic	Intergenic	-9532	NM_025813	66868	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1333	chr10	111164358	111164872	+	4.61109	NA	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-187	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding
diff_RLAGL_Vector_cond1_3123	chr14	49783305	49783546	+	4.61069	NA	promoter-TSS (NM_026142)	promoter-TSS (NM_026142)	-58	NM_026142	67419	Mm.318710	NM_026142	ENSMUSG00000036242	3632451O06Rik	AU067705	RIKEN cDNA 3632451O06 gene	protein-coding
diff_RLAGL_Vector_cond1_1637	chr11	50236798	50237213	+	4.60943	NA	intron (NR_132732, intron 4 of 4)	CpG	1527	NR_132733	17001	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding
diff_RLAGL_Vector_cond1_4111	chr16	74878693	74878949	+	4.60943	NA	Intergenic	Intergenic	-467909	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1732	chr11	70655285	70655526	+	4.60908	NA	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-755	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding
diff_RLAGL_Vector_cond1_5820	chr2	136667027	136667367	+	4.60870	NA	Intergenic	Intergenic	-46253	NM_011428	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding
diff_RLAGL_Vector_cond1_5379	chr2	30712086	30712335	+	4.60858	NA	Intergenic	CpG	-9000	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA
diff_RLAGL_Vector_cond1_5162	chr19	41933323	41933668	+	4.60829	NA	promoter-TSS (NM_025644)	promoter-TSS (NM_025644)	23	NM_023740	74168	Mm.20387	NM_023740	ENSMUSG00000025157	Zdhhc16	1500015N03Rik|Aph2	zinc finger, DHHC domain containing 16	protein-coding
diff_RLAGL_Vector_cond1_9320	chr7	142968785	142969035	+	4.60806	NA	intron (NM_008554, intron 1 of 2)	CpG-13755	354	NM_008554	17173	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute complex homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9190	chr7	112213237	112213440	+	4.60789	NA	Intergenic	Intergenic	-12498	NM_177282	320878	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_2720	chr13	60737969	60738191	+	4.60781	NA	intron (NM_029653, intron 18 of 25)	intron (NM_029653, intron 18 of 25)	48284	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding
diff_RLAGL_Vector_cond1_3614	chr15	58594934	58595210	+	4.60657	NA	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	179604	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	D15Ertd621e	AV220772|BC033609|Fam91a1|SKIN|mKIAA0493	DNA segment, Chr 15, ERATO Doi 621, expressed	protein-coding
diff_RLAGL_Vector_cond1_887	chr10	12726405	12726842	+	4.60609	NA	intron (NM_011682, intron 15 of 73)	intron (NM_011682, intron 15 of 73)	135112	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding
diff_RLAGL_Vector_cond1_2875	chr13	92425765	92425971	+	4.60582	NA	promoter-TSS (NM_175455)	promoter-TSS (NM_175455)	-101	NM_175455	218440	Mm.213623	NM_175455	ENSMUSG00000045034	Ankrd34b	6430502M16Rik|DP58	ankyrin repeat domain 34B	protein-coding
diff_RLAGL_Vector_cond1_10020	chr9	37384496	37384738	+	4.60504	NA	exon (NM_175189, exon 7 of 7)	exon (NM_175189, exon 7 of 7)	17011	NM_175189	72927	Mm.266133	NM_175189	ENSMUSG00000046240	Hepacam	2900042E01Rik|Glialcam|Hepn1	hepatocyte cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_2690	chr13	55445042	55445404	+	4.60488	NA	promoter-TSS (NM_001286066)	promoter-TSS (NM_001286066)	-108	NM_001038018	26385	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding
diff_RLAGL_Vector_cond1_2772	chr13	67451492	67451811	+	4.60414	NA	promoter-TSS (NM_177712)	promoter-TSS (NM_177712)	-27	NM_177712	238692	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding
diff_RLAGL_Vector_cond1_7769	chr5	69341251	69341490	+	4.60408	NA	5' UTR (NM_175519, exon 1 of 2)	5' UTR (NM_175519, exon 1 of 2)	339	NM_175519	243043	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding
diff_RLAGL_Vector_cond1_7294	chr4	126753382	126753613	+	4.60407	NA	promoter-TSS (NM_133886)	promoter-TSS (NM_133886)	-58	NM_001035525	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|Kiaa0319l	expressed sequence AU040320	protein-coding
diff_RLAGL_Vector_cond1_10220	chr9	92294194	92294443	+	4.60393	NA	intron (NM_008880, intron 6 of 7)	intron (NM_008880, intron 6 of 7)	-15059	NM_001033184	78459	Mm.179195	NM_001033184	ENSMUSG00000074139	1700057G04Rik	-	RIKEN cDNA 1700057G04 gene	protein-coding
diff_RLAGL_Vector_cond1_10234	chr9	94537717	94538842	+	4.60384	NA	promoter-TSS (NM_001033145)	promoter-TSS (NM_001033145)	-198	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
diff_RLAGL_Vector_cond1_8113	chr5	149678182	149678648	+	4.60333	NA	intron (NM_001081204, intron 1 of 14)	CpG	158	NM_001081204	381694	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding
diff_RLAGL_Vector_cond1_8126	chr5	151298474	151298683	+	4.60186	NA	Intergenic	Intergenic	-70097	NR_045700	625175	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA
diff_RLAGL_Vector_cond1_8954	chr7	44869048	44869403	+	4.60171	NA	intron (NM_133949, intron 1 of 11)	CpG	563	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding
diff_RLAGL_Vector_cond1_9503	chr8	44455795	44456005	+	4.60155	NA	Intergenic	URR1B|DNA|hAT-Charlie	-494308	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_10103	chr9	59617135	59617540	+	4.60155	NA	promoter-TSS (NM_001205239)	promoter-TSS (NM_001205239)	53	NR_038075	67287	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding
diff_RLAGL_Vector_cond1_1239	chr10	89443444	89443974	+	4.60146	NA	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	258	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding
diff_RLAGL_Vector_cond1_2026	chr11	121673006	121673424	+	4.60144	NA	promoter-TSS (NM_178664)	promoter-TSS (NM_178664)	-64	NM_178664	210004	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding
diff_RLAGL_Vector_cond1_8460	chr6	89422714	89423000	+	4.60125	NA	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-60244	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding
diff_RLAGL_Vector_cond1_9076	chr7	75781939	75782274	+	4.60116	NA	Intergenic	CpG	-66232	NM_182782	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding
diff_RLAGL_Vector_cond1_738	chr1	180641096	180641360	+	4.60092	NA	promoter-TSS (NR_120498)	promoter-TSS (NR_120498)	78	NM_001103182	72568	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_6006	chr2	163419498	163419811	+	4.60080	NA	promoter-TSS (NM_025699)	promoter-TSS (NM_025699)	-184	NM_025699	66680	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding
diff_RLAGL_Vector_cond1_3203	chr14	70554096	70554502	+	4.60015	NA	intron (NM_021877, intron 1 of 19)	CpG	243	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding
diff_RLAGL_Vector_cond1_8406	chr6	73248223	73248594	+	4.59952	NA	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	-97	NM_019879	56451	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding
diff_RLAGL_Vector_cond1_8040	chr5	136066764	136066992	+	4.59917	NA	Intergenic	Intergenic	9611	NM_027158	69665	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik	uroplakin 3B-like	protein-coding
diff_RLAGL_Vector_cond1_3610	chr15	57911942	57912212	+	4.59759	NA	promoter-TSS (NM_001081396)	promoter-TSS (NM_001081396)	-122	NM_001081396	210544	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding
diff_RLAGL_Vector_cond1_4550	chr17	66262948	66263170	+	4.59703	NA	Intergenic	MER89|LTR|ERV1	139539	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding
diff_RLAGL_Vector_cond1_3633	chr15	61985369	61985577	+	4.59643	NA	5' UTR (NM_001177353, exon 1 of 3)	5' UTR (NM_001177353, exon 1 of 3)	132	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding
diff_RLAGL_Vector_cond1_3833	chr15	102246900	102247396	+	4.59638	NA	promoter-TSS (NM_001042727)	promoter-TSS (NM_001042727)	-648	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding
diff_RLAGL_Vector_cond1_2652	chr13	42276685	42276929	+	4.59608	NA	Intergenic	Intergenic	-24463	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|preproET	endothelin 1	protein-coding
diff_RLAGL_Vector_cond1_9797	chr8	116793060	116793493	+	4.59588	NA	intron (NR_046193, intron 3 of 3)	intron (NR_046193, intron 3 of 3)	8136	NR_046193	78213	Mm.402039	NR_046193		4930563M20Rik	-	RIKEN cDNA 4930563M20 gene	ncRNA
diff_RLAGL_Vector_cond1_6641	chr3	136948178	136948576	+	4.59555	NA	Intergenic	Intergenic	278311	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding
diff_RLAGL_Vector_cond1_2671	chr13	51847965	51848169	+	4.59526	NA	3' UTR (NM_011817, exon 4 of 4)	3' UTR (NM_011817, exon 4 of 4)	1392	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding
diff_RLAGL_Vector_cond1_1773	chr11	79145952	79146554	+	4.59458	NA	exon (NM_013571, exon 1 of 18)	exon (NM_013571, exon 1 of 18)	101	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding
diff_RLAGL_Vector_cond1_2016	chr11	120713659	120713891	+	4.59439	NA	promoter-TSS (NM_016665)	promoter-TSS (NM_016665)	-8	NM_016665	20892	Mm.259716	NM_016665	ENSMUSG00000025144	Stra13	-	stimulated by retinoic acid 13	protein-coding
diff_RLAGL_Vector_cond1_4966	chr18	74374282	74374798	+	4.59425	NA	Intergenic	Intergenic	-68079	NM_201600	17919	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding
diff_RLAGL_Vector_cond1_2379	chr12	98746742	98747002	+	4.59424	NA	promoter-TSS (NM_029334)	promoter-TSS (NM_029334)	-96	NM_001008506	75553	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding
diff_RLAGL_Vector_cond1_10499	chrX	96879270	96879582	+	4.59424	NA	Intergenic	Lx3B|LINE|L1	165958	NM_029536	76206	Mm.256065	NM_029536	ENSMUSG00000031210	Gpr165	6530406P05Rik	G protein-coupled receptor 165	protein-coding
diff_RLAGL_Vector_cond1_6576	chr3	125938515	125938986	+	4.59356	NA	promoter-TSS (NM_011674)	promoter-TSS (NM_011674)	-200	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding
diff_RLAGL_Vector_cond1_159	chr1	43789761	43790104	+	4.59350	NA	intron (NM_026430, intron 6 of 14)	intron (NM_026430, intron 6 of 14)	37776	NM_026430	67883	Mm.387202	NM_026430		Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding
diff_RLAGL_Vector_cond1_256	chr1	71837797	71838025	+	4.59290	NA	Intergenic	Intergenic	-50201	NR_027659	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA
diff_RLAGL_Vector_cond1_4363	chr17	30912858	30913076	+	4.59289	NA	intron (NM_021332, intron 3 of 12)	intron (NM_021332, intron 3 of 12)	11100	NM_021332	14652	Mm.390969	NM_021332	ENSMUSG00000024027	Glp1r	GLP-1R|GLP1Rc	glucagon-like peptide 1 receptor	protein-coding
diff_RLAGL_Vector_cond1_8888	chr7	28527987	28528200	+	4.59256	NA	Intergenic	Intergenic	5257	NM_177396	338374	Mm.246799	NM_177396	ENSMUSG00000060747	Ifnl3	IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b	interferon lambda 3	protein-coding
diff_RLAGL_Vector_cond1_7392	chr4	141139394	141139601	+	4.59244	NA	intron (NM_001277195, intron 1 of 3)	CpG	299	NR_102344	213491	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4309	chr17	21846303	21846503	+	4.59216	NA	promoter-TSS (NM_029281)	promoter-TSS (NM_029281)	-644	NM_029281	75424	Mm.271252	NM_029281	ENSMUSG00000069743	Zfp820	2610036F08Rik	zinc finger protein 820	protein-coding
diff_RLAGL_Vector_cond1_6480	chr3	98427932	98428152	+	4.59212	NA	exon (NM_172863, exon 3 of 3)	exon (NM_172863, exon 3 of 3)	28989	NM_001111336	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding
diff_RLAGL_Vector_cond1_209	chr1	62706476	62706866	+	4.59135	NA	intron (NM_001077404, intron 1 of 16)	CpG	3354	NM_001077404	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding
diff_RLAGL_Vector_cond1_96	chr1	24107437	24107783	+	4.59022	NA	Intergenic	Intergenic	-7269	NM_026604	68187	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding
diff_RLAGL_Vector_cond1_3954	chr16	37598534	37598901	+	4.59021	NA	intron (NM_013547, intron 4 of 13)	intron (NM_013547, intron 4 of 13)	18564	NR_027778	15233	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding
diff_RLAGL_Vector_cond1_9740	chr8	104375210	104375476	+	4.59000	NA	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	20464	NM_153582	97487	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|ENSMUSG00000051554|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_3524	chr15	35011810	35012041	+	4.58997	NA	intron (NM_019635, intron 6 of 10)	intron (NM_019635, intron 6 of 10)	143881	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding
diff_RLAGL_Vector_cond1_1450	chr10	130470403	130470637	+	4.58855	NA	Intergenic	CpG	-14626	NM_001103365	625109	Mm.469845	NM_001103365	ENSMUSG00000092162	Vmn2r86	EG625109	vomeronasal 2, receptor 86	protein-coding
diff_RLAGL_Vector_cond1_3382	chr14	121339874	121340315	+	4.58845	NA	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	39136	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding
diff_RLAGL_Vector_cond1_3320	chr14	103718991	103719273	+	4.58734	NA	Intergenic	Intergenic	-19700	NR_045148	70898	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_3378	chr14	120831925	120832276	+	4.58643	NA	Intergenic	Intergenic	-79094	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding
diff_RLAGL_Vector_cond1_2004	chr11	119299763	119300203	+	4.58630	NA	promoter-TSS (NM_138669)	promoter-TSS (NM_138669)	60	NM_138669	192170	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding
diff_RLAGL_Vector_cond1_1892	chr11	102142455	102142717	+	4.58567	NA	Intergenic	Intergenic	-2927	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding
diff_RLAGL_Vector_cond1_10045	chr9	43150240	43150520	+	4.58518	NA	intron (NM_011139, intron 3 of 12)	intron (NM_011139, intron 3 of 12)	-33810	NM_001034863	235300	Mm.261326	NM_001034863	ENSMUSG00000048503	Tmem136	AA396355|Gm184	transmembrane protein 136	protein-coding
diff_RLAGL_Vector_cond1_476	chr1	130821144	130821439	+	4.58435	NA	Intergenic	Intergenic	-5393	NM_011082	18703	Mm.276414	NM_011082	ENSMUSG00000026417	Pigr	-	polymeric immunoglobulin receptor	protein-coding
diff_RLAGL_Vector_cond1_776	chr1	187215544	187215789	+	4.58433	NA	promoter-TSS (NM_029067)	promoter-TSS (NM_029067)	155	NM_026367	67769	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_6150	chr3	8913806	8914107	+	4.58358	NA	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	9901	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding
diff_RLAGL_Vector_cond1_6201	chr3	21111711	21112428	+	4.58279	NA	Intergenic	Intergenic	-744892	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
diff_RLAGL_Vector_cond1_1698	chr11	62550324	62550586	+	4.58259	NA	promoter-TSS (NM_011664)	promoter-TSS (NM_011664)	-716	NM_011664	22187	Mm.371592	NM_011664		Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding
diff_RLAGL_Vector_cond1_2793	chr13	69534982	69535190	+	4.58239	NA	Intergenic	CpG-3990	-1222	NM_198600	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_4729	chr18	7516571	7516831	+	4.58235	NA	intron (NM_001161620, intron 2 of 12)	intron (NM_001161620, intron 2 of 12)	110162	NM_001161620	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding
diff_RLAGL_Vector_cond1_5655	chr2	102410662	102410931	+	4.58195	NA	Intergenic	Intergenic	-9896	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding
diff_RLAGL_Vector_cond1_6946	chr4	44605562	44605762	+	4.58133	NA	intron (NM_008782, intron 7 of 9)	B3|SINE|B2	-97138	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA
diff_RLAGL_Vector_cond1_9665	chr8	82402657	82402936	+	4.58124	NA	promoter-TSS (NM_008357)	promoter-TSS (NM_008357)	-210	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding
diff_RLAGL_Vector_cond1_4278	chr17	15704530	15705127	+	4.58113	NA	promoter-TSS (NM_007690)	promoter-TSS (NM_007690)	-139	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_8114	chr5	149838342	149838565	+	4.57941	NA	Intergenic	Intergenic	-9294	NR_045758	70969	Mm.78499	NR_045758	ENSMUSG00000107214	4930500F04Rik	4931407C17Rik	RIKEN cDNA 4930500F04 gene	ncRNA
diff_RLAGL_Vector_cond1_2627	chr13	32318346	32318621	+	4.57897	NA	intron (NM_146041, intron 1 of 10)	intron (NM_146041, intron 1 of 10)	20061	NM_146041	218138	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding
diff_RLAGL_Vector_cond1_3715	chr15	78913706	78913925	+	4.57891	NA	promoter-TSS (NM_020271)	promoter-TSS (NM_020271)	-104	NM_020271	57028	Mm.263169	NM_020271	ENSMUSG00000022436	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding
diff_RLAGL_Vector_cond1_1611	chr11	39589167	39589434	+	4.57875	NA	Intergenic	Intergenic	-199075	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
diff_RLAGL_Vector_cond1_5464	chr2	52220145	52220398	+	4.57816	NA	intron (NM_010889, intron 85 of 156)	intron (NM_010889, intron 85 of 156)	-70731	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA
diff_RLAGL_Vector_cond1_8458	chr6	89362495	89362718	+	4.57811	NA	promoter-TSS (NM_008881)	promoter-TSS (NM_008881)	7	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding
diff_RLAGL_Vector_cond1_3212	chr14	73631628	73631902	+	4.57803	NA	Intergenic	Intergenic	78979	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding
diff_RLAGL_Vector_cond1_5211	chr19	53789044	53789289	+	4.57792	NA	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-103065	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding
diff_RLAGL_Vector_cond1_824	chr1	194194330	194194547	+	4.57694	NA	Intergenic	Intergenic	28321	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
diff_RLAGL_Vector_cond1_6694	chr3	146682518	146682727	+	4.57680	NA	Intergenic	Intergenic	-31305	NM_029144	75015	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding
diff_RLAGL_Vector_cond1_2378	chr12	98746211	98746454	+	4.57576	NA	promoter-TSS (NM_029334)	promoter-TSS (NM_029334)	-636	NM_001008506	75553	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding
diff_RLAGL_Vector_cond1_9818	chr8	120138933	120139170	+	4.57508	NA	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-5878	NM_001163760	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding
diff_RLAGL_Vector_cond1_5974	chr2	157397388	157397724	+	4.57322	NA	TTS (NM_026968)	TTS (NM_026968)	-26737	NM_009271	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding
diff_RLAGL_Vector_cond1_1815	chr11	88099007	88099216	+	4.57322	NA	promoter-TSS (NM_198013)	promoter-TSS (NM_198013)	-35	NM_198013	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_7393	chr4	141239345	141239687	+	4.57303	NA	Intergenic	Intergenic	-3368	NM_172520	213649	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding
diff_RLAGL_Vector_cond1_499	chr1	134232988	134233371	+	4.57293	NA	intron (NM_001291930, intron 1 of 1)	intron (NM_001291930, intron 1 of 1)	1677	NM_001291928	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding
diff_RLAGL_Vector_cond1_10285	chr9	107872757	107873029	+	4.57282	NA	promoter-TSS (NM_011251)	promoter-TSS (NM_011251)	-74	NM_029169	19654	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding
diff_RLAGL_Vector_cond1_2174	chr12	35534712	35535250	+	4.57239	NA	promoter-TSS (NM_013464)	promoter-TSS (NM_013464)	8	NM_013464	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding
diff_RLAGL_Vector_cond1_1406	chr10	125338305	125338519	+	4.57206	NA	Intergenic	Intergenic	-9877	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
diff_RLAGL_Vector_cond1_10229	chr9	94408779	94408984	+	4.57158	NA	Intergenic	Intergenic	129200	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
diff_RLAGL_Vector_cond1_4224	chr16	97620338	97620565	+	4.57154	NA	Intergenic	Intergenic	-9256	NM_015775	50528	Mm.276145	NM_015775	ENSMUSG00000000385	Tmprss2	D16Ertd61e	transmembrane protease, serine 2	protein-coding
diff_RLAGL_Vector_cond1_9927	chr9	14614666	14615076	+	4.57106	NA	5' UTR (NM_001081395, exon 1 of 13)	5' UTR (NM_001081395, exon 1 of 13)	129	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding
diff_RLAGL_Vector_cond1_8304	chr6	47594899	47595213	+	4.57042	NA	promoter-TSS (NM_007971)	promoter-TSS (NM_007971)	-26	NM_001146689	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding
diff_RLAGL_Vector_cond1_10517	chrX	109013825	109014031	+	4.57031	NA	promoter-TSS (NM_016710)	promoter-TSS (NM_016710)	-548	NM_016710	50887	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding
diff_RLAGL_Vector_cond1_10459	chrX	73227924	73228232	+	4.57025	NA	promoter-TSS (NM_007978)	promoter-TSS (NM_007978)	-228	NM_007978	14070	Mm.165807	NM_007978	ENSMUSG00000078317	F8a	AI852759|DXUcsf1|F8a1	factor 8-associated gene A	protein-coding
diff_RLAGL_Vector_cond1_6094	chr2	174747281	174747482	+	4.57020	NA	Intergenic	Intergenic	-13377	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	114CH19|ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding
diff_RLAGL_Vector_cond1_8776	chr6	148093260	148093487	+	4.57008	NA	intron (NM_178797, intron 1 of 12)	intron (NM_178797, intron 1 of 12)	45957	NM_178797	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding
diff_RLAGL_Vector_cond1_4450	chr17	47294105	47294385	+	4.56986	NA	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	64015	NM_172622	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding
diff_RLAGL_Vector_cond1_907	chr10	18191780	18192013	+	4.56949	NA	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	18994	NM_001195036	100045792	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|ENSMUSG00000071392|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding
diff_RLAGL_Vector_cond1_8844	chr7	17341306	17341573	+	4.56869	NA	Intergenic	L1_Mur2|LINE|L1	137962	NM_054064	114872	Mm.322280	NM_054064	ENSMUSG00000023159	Psg29	AA102956|AA409969|cea17	pregnancy-specific glycoprotein 29	protein-coding
diff_RLAGL_Vector_cond1_1075	chr10	59593963	59594259	+	4.56833	NA	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	22581	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding
diff_RLAGL_Vector_cond1_10456	chrX	71492548	71492794	+	4.56794	NA	5' UTR (NM_138309, exon 1 of 9)	5' UTR (NM_138309, exon 1 of 9)	178	NM_138309	171486	Mm.283879	NM_138309	ENSMUSG00000035776	Cd99l2	AW548191|Mic2l1|Xap89	CD99 antigen-like 2	protein-coding
diff_RLAGL_Vector_cond1_5417	chr2	38485974	38486252	+	4.56743	NA	Intergenic	Intergenic	-25584	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding
diff_RLAGL_Vector_cond1_5055	chr19	5488857	5489340	+	4.56652	NA	promoter-TSS (NM_027877)	promoter-TSS (NM_027877)	-762	NM_027877	71711	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 endonuclease homolog (yeast)	protein-coding
diff_RLAGL_Vector_cond1_302	chr1	82188928	82189191	+	4.56650	NA	Intergenic	Intergenic	57143	NR_105762	102466629		NR_105762	ENSMUSG00000098797	Mir6344	Gm27840|mmu-mir-6344	microRNA 6344	ncRNA
diff_RLAGL_Vector_cond1_3109	chr14	46704244	46704481	+	4.56636	NA	Intergenic	Intergenic	-30587	NR_131909	328385	Mm.271545	NR_131909		D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA
diff_RLAGL_Vector_cond1_3166	chr14	61682349	61682850	+	4.56508	NA	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-226	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA
diff_RLAGL_Vector_cond1_7312	chr4	130139079	130139281	+	4.56455	NA	promoter-TSS (NM_198959)	promoter-TSS (NM_198959)	-18	NM_198959	230777	Mm.246595	NM_198959	ENSMUSG00000028778	Hcrtr1	Ox1r|ox-1-R|ox1-R	hypocretin (orexin) receptor 1	protein-coding
diff_RLAGL_Vector_cond1_8961	chr7	45714789	45715058	+	4.56415	NA	5' UTR (NM_020011, exon 1 of 6)	5' UTR (NM_020011, exon 1 of 6)	284	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding
diff_RLAGL_Vector_cond1_1460	chr11	4883080	4883520	+	4.56404	NA	intron (NM_008698, intron 1 of 9)	intron (NM_008698, intron 1 of 9)	-8045	NR_105883	102466764		NR_105883	ENSMUSG00000098296	Mir6918	Gm27968|mmu-mir-6918	microRNA 6918	ncRNA
diff_RLAGL_Vector_cond1_1340	chr10	111972464	111972839	+	4.56377	NA	promoter-TSS (NM_178610)	promoter-TSS (NM_178610)	-44	NM_178610	52705	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding
diff_RLAGL_Vector_cond1_8376	chr6	65042647	65042921	+	4.56373	NA	promoter-TSS (NM_001253392)	promoter-TSS (NM_001253392)	117	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding
diff_RLAGL_Vector_cond1_7341	chr4	134187065	134187340	+	4.56326	NA	promoter-TSS (NM_144527)	promoter-TSS (NM_144527)	-117	NM_144527	70012	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding
diff_RLAGL_Vector_cond1_9815	chr8	119778349	119778658	+	4.56147	NA	promoter-TSS (NM_028883)	promoter-TSS (NM_028883)	-87	NM_028883	74347	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_918	chr10	21826804	21827069	+	4.56032	NA	Intergenic	B1_Mur1|SINE|Alu	-55248	NM_001161845	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding
diff_RLAGL_Vector_cond1_2450	chr12	111377576	111377984	+	4.56012	NA	promoter-TSS (NM_183016)	promoter-TSS (NM_183016)	-62	NM_183016	217866	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding
diff_RLAGL_Vector_cond1_6652	chr3	141465231	141465456	+	4.55963	NA	promoter-TSS (NM_009472)	promoter-TSS (NM_009472)	-221	NM_009472	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 homolog C (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_5181	chr19	46396667	46397006	+	4.55936	NA	promoter-TSS (NM_001025391)	promoter-TSS (NM_001025391)	-60	NM_001025391	24069	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	suppressor of fused homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_367	chr1	93567902	93568104	+	4.55851	NA	intron (NM_145519, intron 6 of 26)	intron (NM_145519, intron 6 of 26)	55899	NM_145519	227377	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding
diff_RLAGL_Vector_cond1_4848	chr18	42744599	42744809	+	4.55835	NA	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	154802	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding
diff_RLAGL_Vector_cond1_482	chr1	131827743	131828008	+	4.55809	NA	promoter-TSS (NM_173865)	promoter-TSS (NM_173865)	-137	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding
diff_RLAGL_Vector_cond1_1361	chr10	117063257	117063646	+	4.55809	NA	intron (NM_007636, intron 1 of 15)	CpG	363	NM_007636	12461	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding
diff_RLAGL_Vector_cond1_7306	chr4	129461216	129461553	+	4.55720	NA	promoter-TSS (NM_133889)	promoter-TSS (NM_133889)	-295	NM_133889	100383	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4263	chr17	13306023	13306260	+	4.55587	NA	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-48431	NM_001167578	100041352	Mm.490251	NM_001167578	ENSMUSG00000052469	Tcp10c	D17Leh66C|D17Leh66ca|Gm9880|T66C-a|Tcp-10c	t-complex protein 10c	protein-coding
diff_RLAGL_Vector_cond1_3425	chr15	5604844	5605133	+	4.55572	NA	Intergenic	LTR80A|LTR|ERVL	108670	NR_045274	71432	Mm.291087	NR_045274		5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA
diff_RLAGL_Vector_cond1_1731	chr11	70562898	70563128	+	4.55488	NA	5' UTR (NM_001045959, exon 1 of 32)	5' UTR (NM_001045959, exon 1 of 32)	132	NM_001045959	50932	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding
diff_RLAGL_Vector_cond1_8723	chr6	141149138	141149478	+	4.55483	NA	Intergenic	LTR40a|LTR|ERVL	-99961	NM_018779	54611	Mm.103728	NM_018779		Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding
diff_RLAGL_Vector_cond1_5283	chr2	12862881	12863100	+	4.55395	NA	Intergenic	B4|SINE|B4	-61051	NM_008961	19212	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding
diff_RLAGL_Vector_cond1_4837	chr18	39380180	39380520	+	4.55373	NA	Intergenic	MIR|SINE|MIR	106895	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding
diff_RLAGL_Vector_cond1_6815	chr4	8799624	8799863	+	4.55187	NA	intron (NM_001277149, intron 3 of 37)	intron (NM_001277149, intron 3 of 37)	109337	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding
diff_RLAGL_Vector_cond1_4039	chr16	56064331	56064862	+	4.55181	NA	Intergenic	Intergenic	-10808	NM_001003973	66315	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding
diff_RLAGL_Vector_cond1_8724	chr6	141190445	141190663	+	4.55083	NA	Intergenic	MLT1D-int|LTR|ERVL-MaLR	-58715	NM_018779	54611	Mm.103728	NM_018779		Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding
diff_RLAGL_Vector_cond1_9279	chr7	134689889	134690205	+	4.55076	NA	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	19360	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding
diff_RLAGL_Vector_cond1_5967	chr2	156475593	156475922	+	4.55024	NA	5' UTR (NM_001006664, exon 1 of 22)	5' UTR (NM_001006664, exon 1 of 22)	223	NM_001006664	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding
diff_RLAGL_Vector_cond1_7375	chr4	139034313	139034565	+	4.54964	NA	intron (NM_029857, intron 14 of 16)	intron (NM_029857, intron 14 of 16)	40350	NM_021358	15565	Mm.291096	NM_021358	ENSMUSG00000028747	Htr6	5-HT6	5-hydroxytryptamine (serotonin) receptor 6	protein-coding
diff_RLAGL_Vector_cond1_2551	chr13	12565514	12565970	+	4.54943	NA	promoter-TSS (NM_026184)	promoter-TSS (NM_026184)	-141	NM_026184	67475	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10044	chr9	43105692	43105910	+	4.54873	NA	promoter-TSS (NM_027144)	promoter-TSS (NM_027144)	-83	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding
diff_RLAGL_Vector_cond1_6246	chr3	36065925	36066200	+	4.54851	NA	promoter-TSS (NM_172678)	promoter-TSS (NM_172678)	62	NM_172678	229211	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding
diff_RLAGL_Vector_cond1_2573	chr13	18333957	18334388	+	4.54846	NA	intron (NM_175006, intron 2 of 7)	intron (NM_175006, intron 2 of 7)	47867	NM_175006	218030	Mm.352263	NM_175006	ENSMUSG00000009734	Pou6f2	D130006K24Rik|RPF-1	POU domain, class 6, transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_9518	chr8	47413265	47413503	+	4.54833	NA	Intergenic	CpG	-61036	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding
diff_RLAGL_Vector_cond1_4327	chr17	24850327	24850612	+	4.54804	NA	promoter-TSS (NM_023480)	promoter-TSS (NM_023480)	-21	NM_024284	14651	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding
diff_RLAGL_Vector_cond1_7987	chr5	129895552	129895814	+	4.54788	NA	promoter-TSS (NM_183088)	promoter-TSS (NM_183088)	-40	NM_183088	71970	Mm.422716	NM_183088	ENSMUSG00000034173	Zbed5	2410018M08Rik|Scand3	zinc finger, BED type containing 5	protein-coding
diff_RLAGL_Vector_cond1_5599	chr2	84811866	84812207	+	4.54740	NA	intron (NM_024230, intron 7 of 7)	intron (NM_024230, intron 7 of 7)	10616	NM_024230	68678	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding
diff_RLAGL_Vector_cond1_4372	chr17	32577565	32577771	+	4.54672	NA	Intergenic	Intergenic	41039	NM_024442	70101	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding
diff_RLAGL_Vector_cond1_8092	chr5	145464698	145464996	+	4.54529	NA	intron (NM_007820, intron 3 of 12)	intron (NM_007820, intron 3 of 12)	4876	NM_007820	13114	Mm.378905	NM_007820	ENSMUSG00000038656	Cyp3a16	-	cytochrome P450, family 3, subfamily a, polypeptide 16	protein-coding
diff_RLAGL_Vector_cond1_3952	chr16	37233787	37234244	+	4.54503	NA	intron (NM_172440, intron 12 of 27)	RLTR17D_Mm|LTR|ERVK	150943	NM_001114612	207227	Mm.80170	NM_172440		Stxbp5l	9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2	syntaxin binding protein 5-like	protein-coding
diff_RLAGL_Vector_cond1_162	chr1	44147779	44148002	+	4.54467	NA	5' UTR (NM_011729, exon 1 of 15)	5' UTR (NM_011729, exon 1 of 15)	146	NM_011729	22592	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding
diff_RLAGL_Vector_cond1_1534	chr11	20396753	20397013	+	4.54317	NA	Intergenic	Intergenic	-64170	NM_018861	55963	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding
diff_RLAGL_Vector_cond1_6460	chr3	93579439	93579989	+	4.54197	NA	Intergenic	Intergenic	24597	NM_009112	20194	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding
diff_RLAGL_Vector_cond1_10483	chrX	93674921	93675178	+	4.54189	NA	promoter-TSS (NM_211138)	promoter-TSS (NM_211138)	-63	NM_211138	236899	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding
diff_RLAGL_Vector_cond1_10529	chrX	115717744	115718015	+	4.54152	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-731065	NM_001033471	382239	Mm.336224	NM_001033471	ENSMUSG00000072995	Cpxcr1	Gm1143	CPX chromosome region, candidate 1	protein-coding
diff_RLAGL_Vector_cond1_1355	chr10	116192206	116192574	+	4.54060	NA	intron (NM_001161837, intron 5 of 12)	intron (NM_001161837, intron 5 of 12)	15039	NM_001161840	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding
diff_RLAGL_Vector_cond1_5159	chr19	40831087	40831304	+	4.54036	NA	promoter-TSS (NM_172839)	promoter-TSS (NM_172839)	-84	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding
diff_RLAGL_Vector_cond1_3070	chr14	31206776	31207019	+	4.54019	NA	promoter-TSS (NM_022656)	promoter-TSS (NM_022656)	-71	NM_022656	64652	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1	nischarin	protein-coding
diff_RLAGL_Vector_cond1_3221	chr14	75284008	75284322	+	4.53997	NA	promoter-TSS (NM_026083)	promoter-TSS (NM_026083)	-208	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding
diff_RLAGL_Vector_cond1_4261	chr17	12960447	12960869	+	4.53993	NA	promoter-TSS (NM_009338)	promoter-TSS (NM_009338)	67	NM_009338	110460	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_6224	chr3	27283151	27283410	+	4.53637	NA	Intergenic	Intergenic	-33797	NM_009425	22035	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding
diff_RLAGL_Vector_cond1_5203	chr19	53080661	53080981	+	4.53605	NA	intron (NR_045320, intron 2 of 2)	intron (NR_045320, intron 2 of 2)	4569	NR_045320	78457	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA
diff_RLAGL_Vector_cond1_967	chr10	31538252	31538528	+	4.53500	NA	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	71335	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
diff_RLAGL_Vector_cond1_2876	chr13	92483842	92484055	+	4.53465	NA	promoter-TSS (NM_001163627)	promoter-TSS (NM_001163627)	83	NM_001163627	73942	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding
diff_RLAGL_Vector_cond1_8062	chr5	139325385	139325640	+	4.53370	NA	promoter-TSS (NM_172723)	promoter-TSS (NM_172723)	-48	NM_172723	231821	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding
diff_RLAGL_Vector_cond1_3238	chr14	79661009	79661369	+	4.53281	NA	intron (NM_001310655, intron 2 of 6)	intron (NM_001310655, intron 2 of 6)	994	NM_010701	16840	Mm.46561	NM_010701	ENSMUSG00000022025	Lect1	Bricd3|ChM-I	leukocyte cell derived chemotaxin 1	protein-coding
diff_RLAGL_Vector_cond1_9126	chr7	91262251	91262507	+	4.53229	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	171593	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1835	chr11	94281410	94281630	+	4.53226	NA	Intergenic	MIR3|SINE|MIR	-38941	NM_181819	278507	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_5832	chr2	137191176	137191405	+	4.53206	NA	Intergenic	URR1A|DNA|hAT-Charlie	-74770	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding
diff_RLAGL_Vector_cond1_9836	chr8	121906601	121906975	+	4.53175	NA	intron (NM_011404, intron 1 of 9)	intron (NM_011404, intron 1 of 9)	898	NM_011404	20539	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding
diff_RLAGL_Vector_cond1_869	chr10	9175094	9175301	+	4.53170	NA	Intergenic	B1_Mur4|SINE|Alu	-289127	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1551	chr11	23895175	23895441	+	4.53097	NA	promoter-TSS (NM_172555)	promoter-TSS (NM_172555)	-38	NM_172555	216578	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding
diff_RLAGL_Vector_cond1_8244	chr6	30896645	30896934	+	4.53087	NA	promoter-TSS (NM_017478)	promoter-TSS (NM_017478)	5	NM_017478	54160	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding
diff_RLAGL_Vector_cond1_6996	chr4	56840487	56840771	+	4.53077	NA	intron (NM_018761, intron 4 of 18)	intron (NM_018761, intron 4 of 18)	24582	NM_018761	54366	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding
diff_RLAGL_Vector_cond1_9637	chr8	77170224	77170524	+	4.53047	NA	intron (NM_001083906, intron 4 of 8)	intron (NM_001083906, intron 4 of 8)	267866	NM_001083906	110784	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding
diff_RLAGL_Vector_cond1_312	chr1	82834530	82834822	+	4.52971	NA	Intergenic	Intergenic	-4784	NM_010472	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding
diff_RLAGL_Vector_cond1_5936	chr2	151572297	151572687	+	4.52895	NA	promoter-TSS (NM_145535)	promoter-TSS (NM_145535)	-131	NM_145535	228765	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding
diff_RLAGL_Vector_cond1_6627	chr3	133516227	133516455	+	4.52756	NA	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	28049	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding
diff_RLAGL_Vector_cond1_4392	chr17	34661189	34661390	+	4.52719	NA	Intergenic	Intergenic	-9246	NM_031176	81877	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding
diff_RLAGL_Vector_cond1_1648	chr11	51883724	51883942	+	4.52679	NA	Intergenic	Intergenic	-26352	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding
diff_RLAGL_Vector_cond1_6417	chr3	82809849	82810147	+	4.52635	NA	Intergenic	Intergenic	66485	NM_001277170	633285	Mm.265114	NM_001146328		Rbm46	EG633285|ENSMUSG00000033882|Gm761	RNA binding motif protein 46	protein-coding
diff_RLAGL_Vector_cond1_4418	chr17	40868587	40868820	+	4.52571	NA	Intergenic	Intergenic	11855	NM_027834	71583	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding
diff_RLAGL_Vector_cond1_1338	chr10	111795833	111796118	+	4.52446	NA	Intergenic	Intergenic	78401	NR_046029	629206	Mm.391444	NR_046029		Gm20758	-	predicted gene, 20758	ncRNA
diff_RLAGL_Vector_cond1_6714	chr3	148989400	148990042	+	4.52445	NA	Intergenic	CpG	-35086	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_4569	chr17	69571202	69571625	+	4.52431	NA	Intergenic	RMER17B|LTR|ERVK	132087	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
diff_RLAGL_Vector_cond1_6778	chr3	159495258	159495535	+	4.52429	NA	promoter-TSS (NM_029523)	promoter-TSS (NM_029523)	-37	NM_001172092	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding
diff_RLAGL_Vector_cond1_3340	chr14	106439376	106439577	+	4.52385	NA	intron (NR_045938, intron 2 of 3)	intron (NR_045938, intron 2 of 3)	47044	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
diff_RLAGL_Vector_cond1_3902	chr16	23225103	23225381	+	4.52286	NA	promoter-TSS (NM_001252505)	promoter-TSS (NM_001252505)	502	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_8014	chr5	133309011	133309223	+	4.52228	NA	Intergenic	RMER15|LTR|ERVL	-766774	NM_177047	319974	Mm.409595	NM_177047		Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding
diff_RLAGL_Vector_cond1_3473	chr15	12751009	12751342	+	4.52181	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	73482	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding
diff_RLAGL_Vector_cond1_2901	chr13	103774370	103774674	+	4.52179	NA	Intergenic	CpG	-9940	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding
diff_RLAGL_Vector_cond1_1735	chr11	71019323	71019542	+	4.52172	NA	promoter-TSS (NM_025993)	promoter-TSS (NM_025993)	-129	NM_033562	116891	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding
diff_RLAGL_Vector_cond1_7272	chr4	123613463	123613847	+	4.52164	NA	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-2765	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA
diff_RLAGL_Vector_cond1_5596	chr2	84678182	84678490	+	4.52135	NA	promoter-TSS (NM_025885)	promoter-TSS (NM_025885)	-66	NM_025885	381379	Mm.219643	NM_025885	ENSMUSG00000027080	Med19	2410018M14Rik|3110040A13Rik|LCMR1	mediator complex subunit 19	protein-coding
diff_RLAGL_Vector_cond1_1829	chr11	93263905	93264211	+	4.52125	NA	intron (NM_028296, intron 2 of 8)	RLTR49|LTR|ERVK	164768	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding
diff_RLAGL_Vector_cond1_6930	chr4	39065783	39066364	+	4.52084	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-384220	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
diff_RLAGL_Vector_cond1_7699	chr5	47696496	47696938	+	4.52061	NA	Intergenic	Intergenic	-286438	NM_178804	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8671	chr6	133554316	133554604	+	4.51997	NA	Intergenic	RLTR1B|LTR|ERV1	25271	NM_001185040	545884	Mm.482064	NM_001185040		Gm5885	EG545884	predicted gene 5885	protein-coding
diff_RLAGL_Vector_cond1_7854	chr5	99979042	99979396	+	4.51973	NA	promoter-TSS (NM_007516)	promoter-TSS (NM_007516)	-281	NM_001077265	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding
diff_RLAGL_Vector_cond1_9957	chr9	21546632	21546831	+	4.51886	NA	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-163	NM_153141	59035	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_5286	chr2	12973668	12974155	+	4.51852	NA	intron (NM_008961, intron 1 of 4)	intron (NM_008961, intron 1 of 4)	36953	NM_153155	227580	Mm.229322	NM_153155		C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding
diff_RLAGL_Vector_cond1_10070	chr9	49489019	49489370	+	4.51850	NA	Intergenic	Intergenic	-2969	NM_172770	235330	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding
diff_RLAGL_Vector_cond1_10455	chrX	71049966	71050188	+	4.51837	NA	promoter-TSS (NM_001256048)	promoter-TSS (NM_001256048)	-179	NM_001256048	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9250	chr7	129764648	129764904	+	4.51709	NA	Intergenic	Intergenic	172913	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding
diff_RLAGL_Vector_cond1_10406	chrX	17130291	17130529	+	4.51689	NA	Intergenic	Intergenic	188958	NM_028916	74405	Mm.248531	NM_028916	ENSMUSG00000025038	Efhc2	4933407D04Rik|mRib72-2	EF-hand domain (C-terminal) containing 2	protein-coding
diff_RLAGL_Vector_cond1_3869	chr16	13267973	13268206	+	4.51687	NA	intron (NM_181860, intron 1 of 3)	MTD|LTR|ERVL-MaLR	3010	NM_181860	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding
diff_RLAGL_Vector_cond1_9613	chr8	71371503	71371898	+	4.51650	NA	non-coding (NR_122030, exon 1 of 3)	non-coding (NR_122030, exon 1 of 3)	402	NM_029865	77090	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_10508	chrX	100625926	100626127	+	4.51589	NA	promoter-TSS (NM_008446)	promoter-TSS (NM_008446)	-39	NM_008446	16571	Mm.383091	NM_008446	ENSMUSG00000034311	Kif4	AI323435|D330050K22Rik|Kns4	kinesin family member 4	protein-coding
diff_RLAGL_Vector_cond1_10072	chr9	50408840	50409143	+	4.51579	NA	Intergenic	Intergenic	-85534	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding
diff_RLAGL_Vector_cond1_9695	chr8	88362192	88362403	+	4.51544	NA	promoter-TSS (NM_012047)	promoter-TSS (NM_012047)	-106	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding
diff_RLAGL_Vector_cond1_2943	chr13	114877669	114877907	+	4.51496	NA	intron (NM_008396, intron 6 of 29)	intron (NM_008396, intron 6 of 29)	54253	NM_008396	16398	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5	integrin alpha 2	protein-coding
diff_RLAGL_Vector_cond1_8436	chr6	85961633	85962008	+	4.51477	NA	promoter-TSS (NM_028099)	promoter-TSS (NM_028099)	-153	NM_028099	72102	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding
diff_RLAGL_Vector_cond1_3097	chr14	39472674	39472972	+	4.51473	NA	non-coding (NR_131973, exon 1 of 1)	non-coding (NR_131973, exon 1 of 1)	265	NM_001190187	18183	Mm.258705	NM_008734	ENSMUSG00000041014	Nrg3	ska	neuregulin 3	protein-coding
diff_RLAGL_Vector_cond1_1044	chr10	52896871	52897105	+	4.51466	NA	intron (NM_178675, intron 1 of 7)	ORR1C1|LTR|ERVL-MaLR	206487	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding
diff_RLAGL_Vector_cond1_5735	chr2	118479193	118479825	+	4.51461	NA	intron (NM_009273, intron 1 of 4)	CpG-8397	187	NM_009273	20813	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding
diff_RLAGL_Vector_cond1_5247	chr2	4047740	4048243	+	4.51458	NA	Intergenic	Intergenic	93150	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA
diff_RLAGL_Vector_cond1_7479	chr4	154011623	154011827	+	4.51388	NA	promoter-TSS (NM_201226)	promoter-TSS (NM_201226)	-78	NM_201226	72946	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding
diff_RLAGL_Vector_cond1_866	chr10	8518755	8518995	+	4.51253	NA	promoter-TSS (NM_177387)	promoter-TSS (NM_177387)	-50	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding
diff_RLAGL_Vector_cond1_2155	chr12	31400888	31401100	+	4.51185	NA	Intergenic	L1ME1|LINE|L1	-37225	NM_021353	13487	Mm.490454	NM_021353	ENSMUSG00000001225	Slc26a3	9030623B18Rik|9130013M11Rik|AV376035|Dra	solute carrier family 26, member 3	protein-coding
diff_RLAGL_Vector_cond1_4703	chr17	93558474	93558880	+	4.51150	NA	Intergenic	RLTR22_Mur|LTR|ERVK	359509	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_5009	chr18	82735525	82735776	+	4.51128	NA	Intergenic	Intergenic	15369	NR_039572	100628586		NR_039572	ENSMUSG00000092638	Mir5112	mmu-mir-5112|mu-mir-5112	microRNA 5112	ncRNA
diff_RLAGL_Vector_cond1_624	chr1	162854202	162854412	+	4.51113	NA	intron (NM_010231, intron 2 of 8)	intron (NM_010231, intron 2 of 8)	12241	NM_010231	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding
diff_RLAGL_Vector_cond1_1770	chr11	78512253	78512467	+	4.51095	NA	promoter-TSS (NM_026389)	promoter-TSS (NM_026389)	64	NM_026389	67811	Mm.197493	NM_026389	ENSMUSG00000001100	Poldip2	1300003F06Rik|Pdip38	polymerase (DNA-directed), delta interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_942	chr10	27001596	27001828	+	4.50861	NA	intron (NM_008481, intron 55 of 63)	intron (NM_008481, intron 55 of 63)	229200	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
diff_RLAGL_Vector_cond1_6610	chr3	130867506	130867712	+	4.50664	NA	Intergenic	Intergenic	-137211	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding
diff_RLAGL_Vector_cond1_3978	chr16	43579255	43579470	+	4.50648	NA	intron (NM_019778, intron 7 of 8)	intron (NM_019778, intron 7 of 8)	-61293	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA
diff_RLAGL_Vector_cond1_2732	chr13	62558566	62558982	+	4.50625	NA	promoter-TSS (NM_001162911)	promoter-TSS (NM_001162911)	-175	NM_001162911	77117	Mm.470091	NM_175252		Zfp934	6720457D02Rik	zinc finger protein 934	protein-coding
diff_RLAGL_Vector_cond1_6731	chr3	152265975	152266184	+	4.50603	NA	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	241	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding
diff_RLAGL_Vector_cond1_9325	chr7	143830082	143830326	+	4.50581	NA	5' UTR (NM_007856, exon 2 of 9)	5' UTR (NM_007856, exon 2 of 9)	7037	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding
diff_RLAGL_Vector_cond1_1682	chr11	60352855	60353160	+	4.50514	NA	promoter-TSS (NM_001039092)	promoter-TSS (NM_001039092)	-102	NM_001039093	216810	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding
diff_RLAGL_Vector_cond1_9571	chr8	61626734	61626953	+	4.50514	NA	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-35674	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding
diff_RLAGL_Vector_cond1_9551	chr8	56335737	56336016	+	4.50491	NA	Intergenic	Intergenic	41324	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding
diff_RLAGL_Vector_cond1_8604	chr6	122258925	122259234	+	4.50480	NA	Intergenic	Intergenic	23754	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding
diff_RLAGL_Vector_cond1_1390	chr10	121310612	121310923	+	4.50437	NA	exon (NM_029057, exon 1 of 12)	exon (NM_029057, exon 1 of 12)	422	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding
diff_RLAGL_Vector_cond1_3516	chr15	32575267	32575526	+	4.50426	NA	intron (NM_009154, intron 11 of 22)	RLTR20D|LTR|ERVK	330583	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding
diff_RLAGL_Vector_cond1_9789	chr8	114130914	114131120	+	4.50356	NA	Intergenic	Intergenic	-2557	NM_001290180	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding
diff_RLAGL_Vector_cond1_2168	chr12	34907163	34907490	+	4.50285	NA	intron (NM_001271386, intron 2 of 27)	CpG	9769	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
diff_RLAGL_Vector_cond1_6264	chr3	40540673	40540885	+	4.50282	NA	promoter-TSS (NM_175515)	promoter-TSS (NM_175515)	12	NM_175515	380614	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity effector homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9525	chr8	47994771	47995179	+	4.50276	NA	Intergenic	Intergenic	-4424	NM_133791	52357	Mm.235074	NM_133791		Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_10207	chr9	88547929	88548376	+	4.50256	NA	5' UTR (NM_001142943, exon 1 of 6)	5' UTR (NM_001142943, exon 1 of 6)	132	NM_001163061	71640	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik	zinc finger protein 949	protein-coding
diff_RLAGL_Vector_cond1_10458	chrX	73053929	73054134	+	4.50123	NA	Intergenic	Intergenic	-10756	NM_153169	245468	Mm.256249	NM_153169	ENSMUSG00000046287	Pnma3	-	paraneoplastic antigen MA3	protein-coding
diff_RLAGL_Vector_cond1_2539	chr13	9276519	9276853	+	4.50115	NA	5' UTR (NM_001081426, exon 1 of 37)	5' UTR (NM_001081426, exon 1 of 37)	161	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	DIP2 disco-interacting protein 2 homolog C (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7510	chr5	3802699	3803069	+	4.50026	NA	promoter-TSS (NM_030675)	promoter-TSS (NM_030675)	240	NM_001003909	70797	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9509	chr8	45650067	45650266	+	4.50002	NA	intron (NM_001310707, intron 1 of 23)	intron (NM_001310707, intron 1 of 23)	-11827	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777	sorbin and SH3 domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_955	chr10	30631894	30632118	+	4.49958	NA	Intergenic	MERV1_I-int|LTR|ERV1	-13640	NM_025798	66847	Mm.46218	NM_025798		Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_1676	chr11	59208311	59208529	+	4.49957	NA	promoter-TSS (NM_024210)	promoter-TSS (NM_024210)	59	NM_024210	67862	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding
diff_RLAGL_Vector_cond1_7765	chr5	67847312	67847668	+	4.49946	NA	promoter-TSS (NM_001284345)	promoter-TSS (NM_001284345)	-59	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding
diff_RLAGL_Vector_cond1_10274	chr9	105530027	105530282	+	4.49904	NA	Intergenic	MER31B|LTR|ERV1	-8897	NM_001253831	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding
diff_RLAGL_Vector_cond1_3372	chr14	120318367	120318786	+	4.49893	NA	intron (NM_175341, intron 1 of 8)	intron (NM_175341, intron 1 of 8)	42907	NM_207515	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding
diff_RLAGL_Vector_cond1_9647	chr8	78820992	78821277	+	4.49860	NA	promoter-TSS (NM_030145)	promoter-TSS (NM_030145)	18	NM_030145	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_3414	chr15	4020847	4021347	+	4.49782	NA	non-coding (NR_028266, exon 2 of 2)	non-coding (NR_028266, exon 2 of 2)	-5331	NM_024188	67041	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding
diff_RLAGL_Vector_cond1_9664	chr8	82351485	82351776	+	4.49762	NA	intron (NM_001254747, intron 2 of 7)	intron (NM_001254747, intron 2 of 7)	50956	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding
diff_RLAGL_Vector_cond1_322	chr1	86442334	86442746	+	4.49759	NA	Intergenic	CpG	16211	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding
diff_RLAGL_Vector_cond1_4603	chr17	75551396	75551605	+	4.49758	NA	intron (NM_133747, intron 1 of 7)	CpG	446	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding
diff_RLAGL_Vector_cond1_8628	chr6	127079822	127080106	+	4.49719	NA	intron (NM_022657, intron 2 of 2)	intron (NM_022657, intron 2 of 2)	7062	NM_022657	64654	Mm.347933	NM_022657		Fgf23	-	fibroblast growth factor 23	protein-coding
diff_RLAGL_Vector_cond1_8863	chr7	24327366	24327588	+	4.49716	NA	Intergenic	Intergenic	6488	NM_001163810	69301	Mm.144202	NM_027028	ENSMUSG00000055826	Tescl	1700008P20Rik	tescalcin-like	protein-coding
diff_RLAGL_Vector_cond1_9493	chr8	41394765	41395034	+	4.49670	NA	Intergenic	B3|SINE|B2	-20202	NM_019734	11886	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding
diff_RLAGL_Vector_cond1_9244	chr7	128461546	128462060	+	4.49666	NA	promoter-TSS (NM_009383)	promoter-TSS (NM_009383)	-290	NM_009383	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding
diff_RLAGL_Vector_cond1_5219	chr19	55596101	55596340	+	4.49646	NA	intron (NM_001293686, intron 7 of 7)	MIRb|SINE|MIR	105984	NR_045318	77594	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA
diff_RLAGL_Vector_cond1_8334	chr6	54967615	54967830	+	4.49601	NA	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	3939	NM_001171007	107607	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_10074	chr9	50562064	50562265	+	4.49537	NA	promoter-TSS (NM_025687)	promoter-TSS (NM_025687)	-896	NM_025687	66654	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding
diff_RLAGL_Vector_cond1_1871	chr11	99041153	99041387	+	4.49492	NA	promoter-TSS (NM_010517)	promoter-TSS (NM_010517)	10	NM_010517	16010	Mm.233799	NM_010517		Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_5966	chr2	156180221	156180422	+	4.49450	NA	promoter-TSS (NM_133242)	promoter-TSS (NM_133242)	-83	NM_001291114	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding
diff_RLAGL_Vector_cond1_6849	chr4	15881139	15881394	+	4.49293	NA	promoter-TSS (NM_009788)	promoter-TSS (NM_009788)	2	NM_009788	12307	Mm.277665	NM_009788		Calb1	Brain-2|CB|Calb|Calb-1	calbindin 1	protein-coding
diff_RLAGL_Vector_cond1_9208	chr7	119332613	119332967	+	4.49253	NA	Intergenic	Intergenic	126482	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding
diff_RLAGL_Vector_cond1_7241	chr4	117550239	117550618	+	4.49248	NA	promoter-TSS (NM_080469)	promoter-TSS (NM_080469)	63	NM_001285899	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding
diff_RLAGL_Vector_cond1_666	chr1	170478626	170479119	+	4.49100	NA	intron (NM_001109985, intron 2 of 9)	intron (NM_001109985, intron 2 of 9)	78238	NM_027528	70729	Mm.487078	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding
diff_RLAGL_Vector_cond1_2615	chr13	29738236	29738455	+	4.49098	NA	intron (NR_131896, intron 5 of 16)	intron (NR_131896, intron 5 of 16)	117328	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
diff_RLAGL_Vector_cond1_7457	chr4	150371843	150372171	+	4.49053	NA	intron (NM_001085492, intron 1 of 22)	CpG	90091	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding
diff_RLAGL_Vector_cond1_7295	chr4	126803530	126803821	+	4.48978	NA	intron (NM_001035525, intron 3 of 23)	intron (NM_001035525, intron 3 of 23)	49905	NM_133886	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|Kiaa0319l	expressed sequence AU040320	protein-coding
diff_RLAGL_Vector_cond1_5752	chr2	122118265	122118512	+	4.48961	NA	promoter-TSS (NM_145531)	promoter-TSS (NM_145531)	-2	NM_145531	214585	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	spastic paraplegia 11	protein-coding
diff_RLAGL_Vector_cond1_8836	chr7	16098413	16098652	+	4.48915	NA	promoter-TSS (NM_025898)	promoter-TSS (NM_025898)	-111	NM_025898	108124	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding
diff_RLAGL_Vector_cond1_4490	chr17	54685198	54685615	+	4.48804	NA	Intergenic	Intergenic	-315332	NR_045825	69418	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA
diff_RLAGL_Vector_cond1_5487	chr2	58484214	58484556	+	4.48785	NA	intron (NM_001110205, intron 3 of 10)	intron (NM_001110205, intron 3 of 10)	82443	NM_001110205	11477	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding
diff_RLAGL_Vector_cond1_8341	chr6	56714869	56715135	+	4.48778	NA	promoter-TSS (NM_030235)	promoter-TSS (NM_030235)	97	NM_030235	78937	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 homolog (S. cerevisiase)	protein-coding
diff_RLAGL_Vector_cond1_7158	chr4	100797859	100798100	+	4.48773	NA	intron (NM_198037, intron 1 of 26)	intron (NM_198037, intron 1 of 26)	21300	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9962	chr9	22085358	22085670	+	4.48761	NA	promoter-TSS (NM_012029)	promoter-TSS (NM_012029)	-87	NM_001253897	26940	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8243	chr6	30896276	30896498	+	4.48740	NA	TTS (NM_054073)	TTS (NM_054073)	407	NM_017478	54160	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding
diff_RLAGL_Vector_cond1_5739	chr2	119262999	119263293	+	4.48698	NA	Intergenic	Intergenic	8080	NM_145530	228543	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog gene family, member V	protein-coding
diff_RLAGL_Vector_cond1_1990	chr11	118418751	118419165	+	4.48610	NA	5' UTR (NM_001267592, exon 1 of 6)	5' UTR (NM_001267592, exon 1 of 6)	160	NM_029502	76025	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding
diff_RLAGL_Vector_cond1_8027	chr5	135107776	135108000	+	4.48598	NA	intron (NM_021455, intron 1 of 16)	intron (NM_021455, intron 1 of 16)	997	NM_021455	58805	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding
diff_RLAGL_Vector_cond1_6337	chr3	60745177	60745381	+	4.48589	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	244100	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4080	chr16	64852270	64852658	+	4.48554	NA	intron (NM_178647, intron 1 of 2)	CpG	379	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_3722	chr15	80701511	80701733	+	4.48337	NA	Intergenic	B1F1|SINE|Alu	-4012	NR_045309	106059	Mm.442457	NR_045309		A430088P11Rik	-	RIKEN cDNA A430088P11 gene	ncRNA
diff_RLAGL_Vector_cond1_6817	chr4	9882071	9882286	+	4.48316	NA	Intergenic	Intergenic	35219	NR_004448	74662	Mm.483401	NR_004448	ENSMUSG00000082843	4930448K20Rik	1700009K09Rik	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo
diff_RLAGL_Vector_cond1_2006	chr11	119976184	119976511	+	4.48273	NA	intron (NM_130862, intron 3 of 13)	intron (NM_130862, intron 3 of 13)	33255	NM_001037754	108100	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_3375	chr14	120604041	120604315	+	4.48228	NA	Intergenic	Intergenic	125717	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding
diff_RLAGL_Vector_cond1_5118	chr19	24317315	24317629	+	4.48165	NA	intron (NM_008846, intron 13 of 14)	intron (NM_008846, intron 13 of 14)	-36886	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding
diff_RLAGL_Vector_cond1_3710	chr15	77822093	77822526	+	4.48020	NA	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	19866	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding
diff_RLAGL_Vector_cond1_2682	chr13	54371423	54371779	+	4.47943	NA	intron (NM_009946, intron 1 of 3)	CpG	252	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding
diff_RLAGL_Vector_cond1_8772	chr6	146907856	146908120	+	4.47934	NA	intron (NM_001170433, intron 1 of 27)	intron (NM_001170433, intron 1 of 27)	19494	NM_001170433	67533	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding
diff_RLAGL_Vector_cond1_392	chr1	103526141	103526349	+	4.47779	NA	Intergenic	RMER15|LTR|ERVL	-1242574	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
diff_RLAGL_Vector_cond1_1823	chr11	90268910	90269412	+	4.47759	NA	intron (NM_026178, intron 6 of 6)	intron (NM_026178, intron 6 of 6)	19685	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding
diff_RLAGL_Vector_cond1_4905	chr18	60848691	60849069	+	4.47560	NA	promoter-TSS (NM_001198984)	promoter-TSS (NM_001198984)	84	NM_001198984	21453	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	Treacher Collins Franceschetti syndrome 1, homolog	protein-coding
diff_RLAGL_Vector_cond1_5352	chr2	25228403	25228800	+	4.47555	NA	TTS (NM_080854)	TTS (NM_080854)	-3899	NM_146116	227613	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding
diff_RLAGL_Vector_cond1_954	chr10	30618335	30618694	+	4.47526	NA	promoter-TSS (NM_025798)	promoter-TSS (NM_025798)	-148	NM_025798	66847	Mm.46218	NM_025798		Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding
diff_RLAGL_Vector_cond1_2171	chr12	35026121	35026382	+	4.47490	NA	Intergenic	Intergenic	-20938	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding
diff_RLAGL_Vector_cond1_3186	chr14	66869107	66869330	+	4.47489	NA	promoter-TSS (NM_009955)	promoter-TSS (NM_009955)	368	NM_001034881	432870	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding
diff_RLAGL_Vector_cond1_8471	chr6	90544421	90544951	+	4.47429	NA	Intergenic	Intergenic	-6162	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding
diff_RLAGL_Vector_cond1_5733	chr2	118256610	118256825	+	4.47407	NA	intron (NM_027759, intron 1 of 10)	intron (NM_027759, intron 1 of 10)	249	NM_027759	71313	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_7252	chr4	119223758	119224051	+	4.47392	NA	Intergenic	Intergenic	-5687	NM_029198	75180	Mm.179335	NM_029198	ENSMUSG00000028642	4930538K18Rik	-	RIKEN cDNA 4930538K18 gene	protein-coding
diff_RLAGL_Vector_cond1_10084	chr9	51312905	51313175	+	4.47233	NA	intron (NM_027217, intron 2 of 4)	intron (NM_027217, intron 2 of 4)	15877	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding
diff_RLAGL_Vector_cond1_7117	chr4	89294613	89294936	+	4.47185	NA	promoter-TSS (NM_009877)	promoter-TSS (NM_009877)	-155	NM_009877	12578	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin-dependent kinase inhibitor 2A	protein-coding
diff_RLAGL_Vector_cond1_2497	chr12	118836744	118837005	+	4.47185	NA	Intergenic	CpG	-9455	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding
diff_RLAGL_Vector_cond1_2527	chr13	5769726	5770007	+	4.47163	NA	Intergenic	Intergenic	88226	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA
diff_RLAGL_Vector_cond1_4829	chr18	38200089	38200402	+	4.47094	NA	intron (NM_029357, intron 2 of 2)	intron (NM_029357, intron 2 of 2)	9517	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding
diff_RLAGL_Vector_cond1_6936	chr4	41711789	41712001	+	4.47042	NA	TTS (NM_027278)	TTS (NM_027278)	1622	NM_027278	69961	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding
diff_RLAGL_Vector_cond1_6603	chr3	130060445	130060678	+	4.46862	NA	intron (NM_207209, intron 1 of 23)	CpG	346	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1432	chr10	127877692	127877918	+	4.46746	NA	TTS (NM_145424)	TTS (NM_145424)	10894	NM_017473	54150	Mm.6696	NM_017473	ENSMUSG00000040134	Rdh7	AI194929|CRAD2	retinol dehydrogenase 7	protein-coding
diff_RLAGL_Vector_cond1_4404	chr17	35698023	35698249	+	4.46697	NA	intron (NM_007584, intron 1 of 17)	intron (NM_007584, intron 1 of 17)	2454	NM_001198833	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding
diff_RLAGL_Vector_cond1_3867	chr16	12005376	12005625	+	4.46652	NA	intron (NM_001174086, intron 2 of 3)	MIR|SINE|MIR	21387	NM_028277	72555	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding
diff_RLAGL_Vector_cond1_3073	chr14	31830602	31830934	+	4.46621	NA	promoter-TSS (NM_001024604)	promoter-TSS (NM_001024604)	-353	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding
diff_RLAGL_Vector_cond1_1745	chr11	74639073	74639303	+	4.46603	NA	3' UTR (NM_001013784, exon 4 of 4)	3' UTR (NM_001013784, exon 4 of 4)	-10307	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding
diff_RLAGL_Vector_cond1_1527	chr11	18877665	18877885	+	4.46529	NA	Intergenic	Intergenic	141194	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_809	chr1	191990144	191990396	+	4.46449	NA	Intergenic	Intergenic	8364	NR_039566	100628582		NR_039566	ENSMUSG00000093003	Mir3473c	mmu-mir-3473c	microRNA 3473c	ncRNA
diff_RLAGL_Vector_cond1_771	chr1	186749198	186749642	+	4.46428	NA	promoter-TSS (NM_026041)	promoter-TSS (NM_026041)	-62	NM_026041	67223	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_6303	chr3	54755574	54755842	+	4.46394	NA	intron (NM_019483, intron 1 of 5)	CpG	126	NM_019483	55994	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding
diff_RLAGL_Vector_cond1_7961	chr5	119201353	119201612	+	4.46378	NA	Intergenic	MIRc|SINE|MIR	-1464	NR_046033	665194	Mm.491047	NR_046033	ENSMUSG00000107334	Gm7538	EG665194	predicted gene 7538	ncRNA
diff_RLAGL_Vector_cond1_8673	chr6	134018882	134019179	+	4.46330	NA	Intergenic	Intergenic	-16670	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding
diff_RLAGL_Vector_cond1_9855	chr8	126474704	126475245	+	4.46277	NA	promoter-TSS (NM_001159907)	promoter-TSS (NM_001159907)	91	NM_001159907	212728	Mm.482479	NM_001159907	ENSMUSG00000090290	Gm17296	Gm179|Tarbp1	predicted gene, 17296	protein-coding
diff_RLAGL_Vector_cond1_297	chr1	79858300	79858877	+	4.46240	NA	promoter-TSS (NM_009255)	promoter-TSS (NM_009255)	77	NM_009255	20720	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding
diff_RLAGL_Vector_cond1_447	chr1	120073734	120073937	+	4.46231	NA	promoter-TSS (NM_019432)	promoter-TSS (NM_019432)	-55	NM_019432	170706	Mm.24750	NM_019432		Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding
diff_RLAGL_Vector_cond1_4369	chr17	32321178	32321533	+	4.46145	NA	promoter-TSS (NM_019774)	promoter-TSS (NM_019774)	-117	NR_131219	56399	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding
diff_RLAGL_Vector_cond1_4915	chr18	64350700	64350953	+	4.46132	NA	intron (NM_194268, intron 1 of 1)	intron (NM_194268, intron 1 of 1)	10462	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding
diff_RLAGL_Vector_cond1_2376	chr12	98280605	98280818	+	4.46065	NA	Intergenic	Intergenic	12076	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding
diff_RLAGL_Vector_cond1_2313	chr12	73964529	73964898	+	4.46013	NA	exon (NM_178392, exon 1 of 10)	exon (NM_178392, exon 1 of 10)	183	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_9847	chr8	123318422	123318734	+	4.45968	NA	promoter-TSS (NM_016925)	promoter-TSS (NM_016925)	-2	NM_016925	14087	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding
diff_RLAGL_Vector_cond1_7147	chr4	98106846	98107217	+	4.45887	NA	intron (NM_010905, intron 10 of 10)	intron (NM_010905, intron 10 of 10)	276234	NM_053157	94043	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_6581	chr3	126609748	126610060	+	4.45796	NA	intron (NM_001293665, intron 2 of 19)	intron (NM_001293665, intron 2 of 19)	12953	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
diff_RLAGL_Vector_cond1_1837	chr11	94774945	94775353	+	4.45630	NA	Intergenic	Intergenic	7554	NM_001034896	544806	Mm.379774	NM_001034896	ENSMUSG00000075610	Tmem92	AU016430|Tmem92-ps	transmembrane protein 92	protein-coding
diff_RLAGL_Vector_cond1_9615	chr8	71611087	71611531	+	4.45591	NA	exon (NM_146211, exon 1 of 12)	exon (NM_146211, exon 1 of 12)	285	NM_146211	234407	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_1020	chr10	42478396	42478747	+	4.45526	NA	promoter-TSS (NM_145743)	promoter-TSS (NM_145743)	-6	NM_145743	215951	Mm.89646	NM_145743	ENSMUSG00000038302	Lace1	CG8520	lactation elevated 1	protein-coding
diff_RLAGL_Vector_cond1_6127	chr2	180455778	180456288	+	4.45510	NA	Intergenic	Intergenic	-4945	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding
diff_RLAGL_Vector_cond1_113	chr1	31073066	31073284	+	4.45447	NA	Intergenic	Intergenic	-103260	NM_153601	266744	Mm.389093	NM_153601	ENSMUSG00000050217	Lgsn	Gluld1|Lgs|lengsin	lengsin, lens protein with glutamine synthetase domain	protein-coding
diff_RLAGL_Vector_cond1_4561	chr17	68978242	68978485	+	4.45441	NA	Intergenic	Intergenic	141227	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding
diff_RLAGL_Vector_cond1_4454	chr17	47688078	47688307	+	4.45435	NA	TTS (NM_001290337)	TTS (NM_001290337)	194	NM_025365	66119	Mm.89912	NM_025365		Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6 homolog (yeast)	protein-coding
diff_RLAGL_Vector_cond1_5384	chr2	31453531	31453860	+	4.45408	NA	Intergenic	Intergenic	-16575	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding
diff_RLAGL_Vector_cond1_9670	chr8	83290296	83290528	+	4.45339	NA	promoter-TSS (NM_009463)	promoter-TSS (NM_009463)	64	NM_009463	22227	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding
diff_RLAGL_Vector_cond1_9328	chr7	144038327	144038579	+	4.45321	NA	intron (NR_037302, intron 2 of 5)	intron (NR_037302, intron 2 of 5)	29199	NR_037292	100526562		NR_037292	ENSMUSG00000093221	Mir3105	mmu-mir-3105	microRNA 3105	ncRNA
diff_RLAGL_Vector_cond1_8005	chr5	132039486	132039830	+	4.45285	NA	intron (NM_177047, intron 3 of 18)	intron (NM_177047, intron 3 of 18)	159389	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
diff_RLAGL_Vector_cond1_3085	chr14	34673342	34673565	+	4.45258	NA	promoter-TSS (NM_001301330)	promoter-TSS (NM_001301330)	-475	NM_001004436	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding
diff_RLAGL_Vector_cond1_8111	chr5	149636250	149636554	+	4.45210	NA	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-87	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding
diff_RLAGL_Vector_cond1_9484	chr8	40573210	40573433	+	4.45123	NA	intron (NM_001040699, intron 7 of 13)	intron (NM_001040699, intron 7 of 13)	-57474	NM_001271542	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding
diff_RLAGL_Vector_cond1_7679	chr5	43948402	43948667	+	4.45007	NA	Intergenic	MIR|SINE|MIR	33265	NM_008009	14181	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_7279	chr4	124802376	124802606	+	4.44962	NA	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-58	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_8236	chr6	29024035	29024324	+	4.44896	NA	Intergenic	Intergenic	1560	NR_029567	387237		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA
diff_RLAGL_Vector_cond1_7128	chr4	94614395	94614620	+	4.44832	NA	promoter-TSS (NM_026319)	promoter-TSS (NM_026319)	16	NM_001290568	67694	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding
diff_RLAGL_Vector_cond1_8757	chr6	144664862	144665087	+	4.44745	NA	Intergenic	Intergenic	-7894	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA
diff_RLAGL_Vector_cond1_9828	chr8	120589086	120589341	+	4.44719	NA	promoter-TSS (NM_178856)	promoter-TSS (NM_178856)	-138	NM_178856	272551	Mm.275910	NM_178856		Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding
diff_RLAGL_Vector_cond1_7827	chr5	88564847	88565088	+	4.44679	NA	promoter-TSS (NM_001289775)	promoter-TSS (NM_001289775)	-73	NM_001289774	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_4215	chr16	95776627	95777017	+	4.44674	NA	Intergenic	Intergenic	74415	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding
diff_RLAGL_Vector_cond1_1816	chr11	88404269	88404615	+	4.44455	NA	intron (NM_054043, intron 8 of 13)	intron (NM_054043, intron 8 of 13)	51669	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA
diff_RLAGL_Vector_cond1_5892	chr2	145903107	145903629	+	4.44395	NA	intron (NM_026425, intron 1 of 5)	CpG	127	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding
diff_RLAGL_Vector_cond1_3219	chr14	75130743	75131278	+	4.44348	NA	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	-113	NM_001247984	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding
diff_RLAGL_Vector_cond1_533	chr1	139769921	139770138	+	4.44314	NA	intron (NM_001160304, intron 3 of 13)	L1VL2|LINE|L1	11210	NM_001029977	214403	Mm.337613	NM_001029977	ENSMUSG00000070594	Gm4788	Cfhrc|EG214403	predicted gene 4788	protein-coding
diff_RLAGL_Vector_cond1_1954	chr11	115187232	115187555	+	4.44269	NA	promoter-TSS (NM_001033393)	promoter-TSS (NM_001033393)	-77	NM_025400	66176	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding
diff_RLAGL_Vector_cond1_7770	chr5	69341606	69341854	+	4.44192	NA	promoter-TSS (NM_175519)	promoter-TSS (NM_175519)	-21	NM_175519	243043	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding
diff_RLAGL_Vector_cond1_5525	chr2	65256905	65257143	+	4.44158	NA	Intergenic	Intergenic	-18398	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding
diff_RLAGL_Vector_cond1_3092	chr14	36904301	36904506	+	4.44089	NA	intron (NM_028407, intron 4 of 7)	intron (NM_028407, intron 4 of 7)	31165	NM_028407	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding
diff_RLAGL_Vector_cond1_7083	chr4	82447113	82447713	+	4.44064	NA	intron (NM_001286131, intron 2 of 9)	intron (NM_001286131, intron 2 of 9)	58366	NM_001286131	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding
diff_RLAGL_Vector_cond1_3143	chr14	55540466	55540723	+	4.44030	NA	intron (NM_028994, intron 1 of 9)	intron (NM_028994, intron 1 of 9)	328	NM_028994	74551	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding
diff_RLAGL_Vector_cond1_3503	chr15	27884425	27884653	+	4.44013	NA	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	141309	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding
diff_RLAGL_Vector_cond1_6556	chr3	117878504	117878707	+	4.43891	NA	Intergenic	MER21C|LTR|ERVL	-9669	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding
diff_RLAGL_Vector_cond1_5683	chr2	107290447	107290694	+	4.43871	NA	promoter-TSS (NM_021275)	promoter-TSS (NM_021275)	-19	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding
diff_RLAGL_Vector_cond1_711	chr1	177442329	177442588	+	4.43845	NA	Intergenic	CpG	-2203	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
diff_RLAGL_Vector_cond1_156	chr1	43305849	43306355	+	4.43832	NA	Intergenic	Intergenic	-109341	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding
diff_RLAGL_Vector_cond1_9854	chr8	126422301	126422543	+	4.43819	NA	promoter-TSS (NM_174987)	promoter-TSS (NM_174987)	-79	NM_174987	67892	Mm.31946	NM_174987	ENSMUSG00000051671	Coa6	1810063B05Rik|AI447995	cytochrome c oxidase assembly factor 6	protein-coding
diff_RLAGL_Vector_cond1_3528	chr15	36164904	36165113	+	4.43631	NA	promoter-TSS (NM_001081253)	promoter-TSS (NM_001081253)	-124	NM_001081253	78803	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding
diff_RLAGL_Vector_cond1_7544	chr5	15934693	15935000	+	4.43609	NA	5' UTR (NM_001110845, exon 1 of 39)	5' UTR (NM_001110845, exon 1 of 39)	155	NM_009784	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding
diff_RLAGL_Vector_cond1_7409	chr4	143141728	143141969	+	4.43457	NA	intron (NM_001081355, intron 7 of 9)	intron (NM_001081355, intron 7 of 9)	-5686	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA
diff_RLAGL_Vector_cond1_7655	chr5	38480152	38480366	+	4.43408	NA	promoter-TSS (NM_001102415)	promoter-TSS (NM_001102415)	47	NM_001102414	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding
diff_RLAGL_Vector_cond1_9042	chr7	70275952	70276167	+	4.43389	NA	intron (NR_131144, intron 3 of 3)	intron (NR_131144, intron 3 of 3)	61763	NR_131145	624549	Mm.116344	NR_131144		Gm29683	-	predicted gene, 29683	ncRNA
diff_RLAGL_Vector_cond1_5182	chr19	46503820	46504032	+	4.43355	NA	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2278	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding
diff_RLAGL_Vector_cond1_5964	chr2	155862933	155863203	+	4.43334	NA	intron (NR_024487, intron 7 of 9)	intron (NR_024487, intron 7 of 9)	-28214	NM_027788	71405	Mm.260918	NM_027788		Fam83c	5530400B04Rik	family with sequence similarity 83, member C	protein-coding
diff_RLAGL_Vector_cond1_10567	chrX	142680724	142681925	+	4.43324	NA	promoter-TSS (NM_177592)	promoter-TSS (NM_177592)	-76	NM_177592	209497	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding
diff_RLAGL_Vector_cond1_7242	chr4	117630409	117630851	+	4.43312	NA	intron (NM_001285901, intron 6 of 7)	intron (NM_001285901, intron 6 of 7)	51595	NM_023178	66233	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_519	chr1	137141919	137142184	+	4.43306	NA	Intergenic	Intergenic	-181603	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding
diff_RLAGL_Vector_cond1_10221	chr9	92337142	92337378	+	4.43205	NA	intron (NM_001033184, intron 1 of 6)	intron (NM_001033184, intron 1 of 6)	27883	NM_001033184	78459	Mm.179195	NM_001033184	ENSMUSG00000074139	1700057G04Rik	-	RIKEN cDNA 1700057G04 gene	protein-coding
diff_RLAGL_Vector_cond1_1733	chr11	70668712	70669053	+	4.43036	NA	TTS (NM_001190378)	TTS (NM_001190378)	534	NM_001167669	216873	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding
diff_RLAGL_Vector_cond1_2017	chr11	120721494	120721699	+	4.42978	NA	TTS (NM_153545)	TTS (NM_153545)	128	NM_133223	170758	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	RAS-related C3 botulinum substrate 3	protein-coding
diff_RLAGL_Vector_cond1_1686	chr11	60913501	60913706	+	4.42964	NA	intron (NM_025294, intron 1 of 2)	CpG	189	NM_025294	24083	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_5	chr1	4571647	4571978	+	4.42961	NA	Intergenic	CpG	-74458	NM_011441	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding
diff_RLAGL_Vector_cond1_8868	chr7	24904039	24904316	+	4.42950	NA	promoter-TSS (NM_001130152)	promoter-TSS (NM_001130152)	-169	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding
diff_RLAGL_Vector_cond1_3436	chr15	7075272	7075485	+	4.42906	NA	Intergenic	Intergenic	-54194	NM_001113386	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding
diff_RLAGL_Vector_cond1_1684	chr11	60811146	60811452	+	4.42884	NA	promoter-TSS (NM_009171)	promoter-TSS (NM_009171)	-34	NM_009171	20425	Mm.364956	NM_009171		Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding
diff_RLAGL_Vector_cond1_6987	chr4	53931392	53931644	+	4.42856	NA	Intergenic	Intergenic	105473	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding
diff_RLAGL_Vector_cond1_5015	chr18	83011601	83011860	+	4.42842	NA	Intergenic	Intergenic	-91170	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA
diff_RLAGL_Vector_cond1_2727	chr13	61998852	61999055	+	4.42831	NA	Intergenic	IAPEY4_LTR|LTR|ERVK	-130937	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding
diff_RLAGL_Vector_cond1_7285	chr4	126046988	126047190	+	4.42822	NA	exon (NM_025544, exon 1 of 8)	exon (NM_025544, exon 1 of 8)	161	NM_025544	66407	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding
diff_RLAGL_Vector_cond1_10206	chr9	88482781	88483190	+	4.42808	NA	promoter-TSS (NM_001284328)	promoter-TSS (NM_001284328)	-588	NM_001311113	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding
diff_RLAGL_Vector_cond1_3736	chr15	84675282	84675696	+	4.42808	NA	Intergenic	Intergenic	-5509	NM_146061	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding
diff_RLAGL_Vector_cond1_3523	chr15	34367847	34368231	+	4.42787	NA	intron (NM_016762, intron 4 of 18)	RLTR11C_MM|LTR|ERVK	-10167	NM_001256161	77358	Mm.402759	NM_001256161		9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding
diff_RLAGL_Vector_cond1_5939	chr2	152293962	152294179	+	4.42701	NA	intron (NM_024196, intron 1 of 7)	CpG	198	NM_024196	67231	Mm.288733	NM_024196		Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693	TBC1 domain family, member 20	protein-coding
diff_RLAGL_Vector_cond1_2015	chr11	120617806	120618102	+	4.42551	NA	promoter-TSS (NM_024229)	promoter-TSS (NM_024229)	-64	NM_024229	68671	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
diff_RLAGL_Vector_cond1_7997	chr5	131306965	131307225	+	4.42518	NA	5' UTR (NM_145218, exon 1 of 11)	5' UTR (NM_145218, exon 1 of 11)	427	NM_145218	212996	Mm.299204	NM_145218		Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding
diff_RLAGL_Vector_cond1_10588	chrX	155175614	155175820	+	4.42455	NA	Intergenic	Intergenic	-27868	NM_001081671	73347	Mm.63848	NM_001081671	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding
diff_RLAGL_Vector_cond1_1730	chr11	70539994	70540540	+	4.42443	NA	promoter-TSS (NM_008876)	promoter-TSS (NM_008876)	-5	NM_001302476	18806	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding
diff_RLAGL_Vector_cond1_4775	chr18	20741612	20741868	+	4.42442	NA	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	4664	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding
diff_RLAGL_Vector_cond1_461	chr1	125519405	125519664	+	4.42398	NA	Intergenic	Intergenic	-41482	NM_028787	74150	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding
diff_RLAGL_Vector_cond1_1072	chr10	59241144	59241567	+	4.42359	NA	Intergenic	Intergenic	19433	NM_172939	268301	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding
diff_RLAGL_Vector_cond1_10293	chr9	108120088	108120290	+	4.42274	NA	intron (NM_007567, intron 3 of 11)	intron (NM_007567, intron 3 of 11)	-13529	NR_126078	76873	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA
diff_RLAGL_Vector_cond1_5933	chr2	151039237	151039466	+	4.42228	NA	promoter-TSS (NM_026086)	promoter-TSS (NM_026086)	28	NM_026086	67311	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding
diff_RLAGL_Vector_cond1_6947	chr4	44981578	44981812	+	4.42216	NA	intron (NM_080289, intron 1 of 8)	intron (NM_080289, intron 1 of 8)	301	NM_080289	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding
diff_RLAGL_Vector_cond1_5230	chr19	60226505	60226862	+	4.42147	NA	promoter-TSS (NM_029648)	promoter-TSS (NM_029648)	14	NM_029648	76539	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding
diff_RLAGL_Vector_cond1_894	chr10	13850223	13850658	+	4.41981	NA	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	18390	NM_025446	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding
diff_RLAGL_Vector_cond1_9806	chr8	117670521	117670790	+	4.41924	NA	intron (NM_028725, intron 1 of 2)	intron (NM_028725, intron 1 of 2)	860	NM_028725	74032	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding
diff_RLAGL_Vector_cond1_4673	chr17	87882627	87882837	+	4.41911	NA	Intergenic	Intergenic	-84738	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding
diff_RLAGL_Vector_cond1_1153	chr10	79814305	79814598	+	4.41885	NA	intron (NM_001161747, intron 6 of 7)	intron (NM_001161747, intron 6 of 7)	-6570	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding
diff_RLAGL_Vector_cond1_2151	chr12	30911537	30912253	+	4.41854	NA	promoter-TSS (NM_001110239)	promoter-TSS (NM_001110239)	226	NM_001289480	24057	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding
diff_RLAGL_Vector_cond1_5466	chr2	52857649	52858263	+	4.41801	NA	promoter-TSS (NM_172409)	promoter-TSS (NM_172409)	88	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding
diff_RLAGL_Vector_cond1_4978	chr18	77317011	77317246	+	4.41794	NA	intron (NM_172834, intron 4 of 38)	MER91B|DNA|hAT-Tip100	35170	NM_172834	240411	Mm.380247	NM_172834	ENSMUSG00000032818	Loxhd1	1700096C21Rik|4932417K07|sba	lipoxygenase homology domains 1	protein-coding
diff_RLAGL_Vector_cond1_9108	chr7	84055955	84056156	+	4.41777	NA	intron (NM_030728, intron 1 of 28)	intron (NM_030728, intron 1 of 28)	30450	NM_030728	80982	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding
diff_RLAGL_Vector_cond1_6492	chr3	100488280	100488489	+	4.41564	NA	intron (NM_001142952, intron 1 of 1)	CpG	808	NM_001142952	74645	Mm.226900	NM_001142952		Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding
diff_RLAGL_Vector_cond1_7761	chr5	67260504	67260854	+	4.41530	NA	5' UTR (NM_030108, exon 1 of 9)	5' UTR (NM_030108, exon 1 of 9)	114	NM_028975	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding
diff_RLAGL_Vector_cond1_6557	chr3	118189521	118189745	+	4.41430	NA	Intergenic	Intergenic	-244224	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA
diff_RLAGL_Vector_cond1_9139	chr7	98163919	98164134	+	4.41348	NA	intron (NM_007602, intron 1 of 12)	intron (NM_007602, intron 1 of 12)	-1684	NM_001301250	12337	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding
diff_RLAGL_Vector_cond1_4294	chr17	17982707	17982911	+	4.41311	NA	Intergenic	MTD|LTR|ERVL-MaLR	12351	NM_008042	14294	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding
diff_RLAGL_Vector_cond1_6859	chr4	18273439	18273757	+	4.41244	NA	Intergenic	ETnERV2-int|LTR|ERVK	420116	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
diff_RLAGL_Vector_cond1_5934	chr2	151536420	151536876	+	4.41211	NA	Intergenic	Intergenic	-5835	NM_008019	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding
diff_RLAGL_Vector_cond1_6632	chr3	135155483	135155715	+	4.41155	NA	Intergenic	Intergenic	-56964	NM_173762	229841	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding
diff_RLAGL_Vector_cond1_4628	chr17	80062232	80062475	+	4.41149	NA	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-85	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding
diff_RLAGL_Vector_cond1_2785	chr13	68999258	68999845	+	4.41134	NA	promoter-TSS (NM_153534)	promoter-TSS (NM_153534)	-10	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding
diff_RLAGL_Vector_cond1_9945	chr9	20385023	20385250	+	4.41012	NA	promoter-TSS (NM_001004190)	promoter-TSS (NM_001004190)	22	NM_001004190	434377	Mm.379669	NM_001004190	ENSMUSG00000045519	Zfp560	2310030G09Rik|Znf560	zinc finger protein 560	protein-coding
diff_RLAGL_Vector_cond1_1585	chr11	31807799	31808020	+	4.40990	NA	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	16638	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA
diff_RLAGL_Vector_cond1_7423	chr4	145178980	145179235	+	4.40982	NA	intron (NM_001276465, intron 3 of 69)	ORR1A2|LTR|ERVL-MaLR	11559	NM_001276502	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13 D (yeast)	protein-coding
diff_RLAGL_Vector_cond1_8910	chr7	35334082	35334389	+	4.40872	NA	promoter-TSS (NM_027897)	promoter-TSS (NM_027897)	-2	NM_027897	52428	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_489	chr1	133190387	133190792	+	4.40800	NA	Intergenic	Intergenic	-55508	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding
diff_RLAGL_Vector_cond1_7481	chr4	154170538	154170742	+	4.40794	NA	promoter-TSS (NM_001162977)	promoter-TSS (NM_001162977)	-73	NM_001162977	230971	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding
diff_RLAGL_Vector_cond1_5879	chr2	144169935	144170136	+	4.40716	NA	Intergenic	Intergenic	19255	NM_001033778	433481	Mm.330630	NM_001033778		Gm5535	EG433481	predicted gene 5535	protein-coding
diff_RLAGL_Vector_cond1_7162	chr4	101419253	101419453	+	4.40705	NA	promoter-TSS (NM_001177605)	promoter-TSS (NM_001177605)	32	NM_001177604	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding
diff_RLAGL_Vector_cond1_3015	chr14	15698167	15698390	+	4.40589	NA	Intergenic	Intergenic	-259291	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding
diff_RLAGL_Vector_cond1_9317	chr7	142659355	142659661	+	4.40588	NA	promoter-TSS (NR_002855)	promoter-TSS (NR_002855)	-185	NR_002855	111975	Mm.440180	NR_002855	ENSMUSG00000086266	Igf2os	Igf2as|Peg8	insulin-like growth factor 2, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_7700	chr5	47751862	47752111	+	4.40582	NA	Intergenic	MER110A|LTR|ERV1	-231169	NM_178804	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_289	chr1	77514982	77515196	+	4.40570	NA	promoter-TSS (NM_007936)	promoter-TSS (NM_007936)	-1	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding
diff_RLAGL_Vector_cond1_10153	chr9	72531534	72531879	+	4.40561	NA	promoter-TSS (NM_001033536)	promoter-TSS (NM_001033536)	152	NR_045735	75115	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA
diff_RLAGL_Vector_cond1_3706	chr15	76660152	76660354	+	4.40554	NA	promoter-TSS (NM_019396)	promoter-TSS (NM_019396)	-45	NM_180962	54151	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding
diff_RLAGL_Vector_cond1_4995	chr18	80046651	80046963	+	4.40529	NA	promoter-TSS (NM_053117)	promoter-TSS (NM_053117)	-88	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding
diff_RLAGL_Vector_cond1_9431	chr8	26015497	26015778	+	4.40427	NA	promoter-TSS (NM_008033)	promoter-TSS (NM_008033)	-36	NM_008033	14272	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding
diff_RLAGL_Vector_cond1_9947	chr9	20642543	20642885	+	4.40204	NA	promoter-TSS (NM_013911)	promoter-TSS (NM_013911)	92	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding
diff_RLAGL_Vector_cond1_2217	chr12	46818929	46819219	+	4.40127	NA	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-299	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
diff_RLAGL_Vector_cond1_7967	chr5	121385287	121385738	+	4.40064	NA	intron (NM_172275, intron 1 of 11)	CpG	103	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9475	chr8	36458027	36458279	+	4.40042	NA	Intergenic	CpG	-31038	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding
diff_RLAGL_Vector_cond1_10139	chr9	67633869	67634163	+	4.39949	NA	Intergenic	CpG	-74313	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding
diff_RLAGL_Vector_cond1_8697	chr6	136989904	136990111	+	4.39940	NA	Intergenic	Intergenic	35484	NM_023898	78600	Mm.290622	NM_023898		Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding
diff_RLAGL_Vector_cond1_6017	chr2	164822974	164823196	+	4.39893	NA	TTS (NM_178375)	TTS (NM_178375)	399	NM_028028	71971	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding
diff_RLAGL_Vector_cond1_6674	chr3	145118393	145118668	+	4.39782	NA	promoter-TSS (NM_025714)	promoter-TSS (NM_025714)	-59	NM_001162539	52184	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding
diff_RLAGL_Vector_cond1_347	chr1	89580189	89580453	+	4.39782	NA	intron (NM_178119, intron 1 of 17)	CpG	103571	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA
diff_RLAGL_Vector_cond1_9984	chr9	29397860	29398099	+	4.39767	NA	intron (NM_172290, intron 2 of 7)	intron (NM_172290, intron 2 of 7)	565150	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
diff_RLAGL_Vector_cond1_10050	chr9	44396780	44397115	+	4.39760	NA	promoter-TSS (NM_001293631)	promoter-TSS (NM_001293631)	20	NM_001293631	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding
diff_RLAGL_Vector_cond1_6367	chr3	67618861	67619101	+	4.39690	NA	Intergenic	Intergenic	36213	NM_025813	66868	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1868	chr11	98773914	98774150	+	4.39662	NA	intron (NM_145434, intron 1 of 7)	CpG	1345	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding
diff_RLAGL_Vector_cond1_8517	chr6	100724187	100724678	+	4.39648	NA	intron (NM_198612, intron 1 of 6)	intron (NM_198612, intron 1 of 6)	19698	NM_198612	232313	Mm.272037	NM_198612		Gxylt2	Glt8d4|Gm152	glucoside xylosyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_7310	chr4	129810842	129811182	+	4.39647	NA	Intergenic	CpG	-9467	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding
diff_RLAGL_Vector_cond1_8386	chr6	67014728	67015010	+	4.39636	NA	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-21730	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA
diff_RLAGL_Vector_cond1_3740	chr15	84987731	84988004	+	4.39621	NA	5' UTR (NM_001033273, exon 1 of 10)	5' UTR (NM_001033273, exon 1 of 10)	104	NM_001033273	223739	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding
diff_RLAGL_Vector_cond1_3167	chr14	62157175	62157386	+	4.39615	NA	Intergenic	Intergenic	135699	NM_173419	239133	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding
diff_RLAGL_Vector_cond1_4666	chr17	87564175	87564384	+	4.39573	NA	Intergenic	Intergenic	-71700	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_7529	chr5	8132664	8132926	+	4.39511	NA	intron (NM_001310440, intron 17 of 30)	intron (NM_001310440, intron 17 of 30)	76253	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding
diff_RLAGL_Vector_cond1_1498	chr11	11005402	11005673	+	4.39510	NA	Intergenic	MIRb|SINE|MIR	-108479	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_1700	chr11	62624837	62625273	+	4.39393	NA	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	20525	NR_028541	100217444		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA
diff_RLAGL_Vector_cond1_937	chr10	26374832	26375060	+	4.39384	NA	intron (NM_172787, intron 1 of 21)	CpG	239	NM_172787	237339	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	l(3)mbt-like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7262	chr4	121977579	121977805	+	4.39380	NA	Intergenic	L2|LINE|L2	-355567	NM_001099309	666927	Mm.465133	NM_001099309		Gm12887	OTTMUSG00000008910	predicted gene 12887	protein-coding
diff_RLAGL_Vector_cond1_6182	chr3	16369736	16369983	+	4.39374	NA	Intergenic	Lx7|LINE|L1	186676	NR_027375	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding
diff_RLAGL_Vector_cond1_8846	chr7	18240752	18241037	+	4.39370	NA	Intergenic	Intergenic	-4453	NM_153749	266815	Mm.106769	NM_153749	ENSMUSG00000054005	Mill1	5530400I18Rik	MHC I like leukocyte 1	protein-coding
diff_RLAGL_Vector_cond1_1601	chr11	35832112	35832414	+	4.39293	NA	intron (NM_025936, intron 2 of 14)	intron (NM_025936, intron 2 of 14)	2265	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding
diff_RLAGL_Vector_cond1_1722	chr11	69662633	69662882	+	4.39277	NA	promoter-TSS (NM_011900)	promoter-TSS (NM_011900)	-108	NR_125917	24070	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding
diff_RLAGL_Vector_cond1_10457	chrX	71816398	71816689	+	4.39233	NA	promoter-TSS (NM_001081356)	promoter-TSS (NM_001081356)	-215	NM_001290780	67048	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_6230	chr3	30508301	30508592	+	4.39186	NA	intron (NM_021442, intron 1 of 2)	CpG	1041	NM_021442	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding
diff_RLAGL_Vector_cond1_5508	chr2	62383273	62383532	+	4.39098	NA	intron (NM_010074, intron 5 of 25)	intron (NM_010074, intron 5 of 25)	28829	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding
diff_RLAGL_Vector_cond1_1275	chr10	99118108	99118336	+	4.38888	NA	intron (NM_027740, intron 2 of 11)	intron (NM_027740, intron 2 of 11)	10087	NM_015737	14426	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	protein-coding
diff_RLAGL_Vector_cond1_8876	chr7	27473462	27473797	+	4.38796	NA	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-211	NM_133210	170742	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_8740	chr6	143307499	143307701	+	4.38779	NA	Intergenic	Intergenic	61712	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA
diff_RLAGL_Vector_cond1_1982	chr11	117654551	117654982	+	4.38771	NA	intron (NM_198022, intron 1 of 21)	CpG	477	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding
diff_RLAGL_Vector_cond1_10382	chr9	124281177	124281670	+	4.38735	NA	Intergenic	Intergenic	31271	NM_001243117	630836	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding
diff_RLAGL_Vector_cond1_4818	chr18	36281375	36281599	+	4.38603	NA	5' UTR (NM_008989, exon 1 of 2)	5' UTR (NM_008989, exon 1 of 2)	325	NM_008989	19290	Mm.231802	NM_008989		Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding
diff_RLAGL_Vector_cond1_5930	chr2	150909522	150909963	+	4.38587	NA	exon (NM_001163476, exon 1 of 5)	exon (NM_001163476, exon 1 of 5)	148	NM_001163476	69270	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding
diff_RLAGL_Vector_cond1_6494	chr3	100922001	100922574	+	4.38505	NA	promoter-TSS (NM_194343)	promoter-TSS (NM_194343)	-206	NM_194343	229644	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding
diff_RLAGL_Vector_cond1_3701	chr15	76124627	76124834	+	4.38414	NA	exon (NM_001142968, exon 7 of 16)	exon (NM_001142968, exon 7 of 16)	1826	NM_001142968	271278	Mm.205253	NM_198172	ENSMUSG00000044361	BC024139	6230424I18Rik	cDNA sequence BC024139	protein-coding
diff_RLAGL_Vector_cond1_4196	chr16	92057859	92058180	+	4.38394	NA	promoter-TSS (NM_080456)	promoter-TSS (NM_080456)	-303	NM_017391	53881	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding
diff_RLAGL_Vector_cond1_664	chr1	169579473	169579674	+	4.38343	NA	Intergenic	Intergenic	-48109	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_6151	chr3	8923357	8923627	+	4.38225	NA	intron (NM_025434, intron 1 of 2)	CpG	365	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding
diff_RLAGL_Vector_cond1_7498	chr4	155847044	155847280	+	4.38189	NA	promoter-TSS (NM_010091)	promoter-TSS (NM_010091)	-155	NM_001302342	13542	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled, dsh homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8459	chr6	89378120	89378420	+	4.38147	NA	Intergenic	MIR|SINE|MIR	-15657	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding
diff_RLAGL_Vector_cond1_5072	chr19	7606507	7606719	+	4.38086	NA	intron (NM_019516, intron 1 of 8)	intron (NM_019516, intron 1 of 8)	563	NM_019516	56072	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	AW987437|Grip1	lectin, galactose binding, soluble 12	protein-coding
diff_RLAGL_Vector_cond1_5926	chr2	150661305	150661571	+	4.38021	NA	intron (NM_080575, intron 1 of 13)	intron (NM_080575, intron 1 of 13)	-6056	NR_040331	109344	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA
diff_RLAGL_Vector_cond1_9297	chr7	138898222	138898459	+	4.38010	NA	intron (NM_009760, intron 2 of 5)	intron (NM_009760, intron 2 of 5)	11166	NM_009760	12176	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding
diff_RLAGL_Vector_cond1_6323	chr3	57627398	57627657	+	4.37965	NA	Intergenic	URR1A|DNA|hAT-Charlie	10918	NR_105797	102465197		NR_105797	ENSMUSG00000098401	Mir6377	Gm27416|mmu-mir-6377	microRNA 6377	ncRNA
diff_RLAGL_Vector_cond1_2288	chr12	70111497	70111702	+	4.37920	NA	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	30	NR_104398	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding
diff_RLAGL_Vector_cond1_7739	chr5	53961772	53962034	+	4.37900	NA	Intergenic	Intergenic	-36620	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding
diff_RLAGL_Vector_cond1_2999	chr14	11125054	11125292	+	4.37889	NA	intron (NM_001308285, intron 2 of 9)	intron (NM_001308285, intron 2 of 9)	36862	NM_001308285	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding
diff_RLAGL_Vector_cond1_3720	chr15	80013743	80013986	+	4.37848	NA	intron (NM_011057, intron 1 of 6)	CpG	944	NM_011057	18591	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding
diff_RLAGL_Vector_cond1_1152	chr10	79780039	79780546	+	4.37807	NA	intron (NM_031380, intron 3 of 4)	intron (NM_031380, intron 3 of 4)	3018	NM_031380	83554	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding
diff_RLAGL_Vector_cond1_9347	chr8	5054266	5054487	+	4.37768	NA	Intergenic	Intergenic	50856	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	ASBT|ISBT	solute carrier family 10, member 2	protein-coding
diff_RLAGL_Vector_cond1_7464	chr4	151036968	151037345	+	4.37733	NA	intron (NM_011067, intron 5 of 20)	intron (NM_011067, intron 5 of 20)	7509	NM_001289877	18628	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding
diff_RLAGL_Vector_cond1_3011	chr14	14702501	14702726	+	4.37710	NA	promoter-TSS (NM_001033270)	promoter-TSS (NM_001033270)	-412	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding
diff_RLAGL_Vector_cond1_8775	chr6	147476284	147476668	+	4.37569	NA	intron (NM_025911, intron 1 of 12)	CpG	605	NM_025911	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding
diff_RLAGL_Vector_cond1_2548	chr13	12461045	12461246	+	4.37524	NA	intron (NM_001291057, intron 1 of 8)	intron (NM_001291057, intron 1 of 8)	593	NM_001291057	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding
diff_RLAGL_Vector_cond1_4918	chr18	64716771	64716970	+	4.37463	NA	Intergenic	Intergenic	-55870	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding
diff_RLAGL_Vector_cond1_6537	chr3	109651591	109651822	+	4.37445	NA	intron (NM_020505, intron 21 of 26)	intron (NM_020505, intron 21 of 26)	77699	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding
diff_RLAGL_Vector_cond1_6361	chr3	65863355	65863559	+	4.37394	NA	Intergenic	Intergenic	94768	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding
diff_RLAGL_Vector_cond1_6350	chr3	63183377	63183649	+	4.37376	NA	Intergenic	RMER20B|LTR|ERVK	-111922	NM_001289462	17380	Mm.296022	NM_008604		Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding
diff_RLAGL_Vector_cond1_1855	chr11	97188071	97188549	+	4.37348	NA	promoter-TSS (NM_008379)	promoter-TSS (NM_008379)	-418	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding
diff_RLAGL_Vector_cond1_8770	chr6	146432663	146432890	+	4.37308	NA	intron (NM_019923, intron 2 of 56)	PB1D7|SINE|Alu	69447	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding
diff_RLAGL_Vector_cond1_7736	chr5	53589258	53589559	+	4.37289	NA	promoter-TSS (NM_009035)	promoter-TSS (NM_009035)	-938	NM_009035	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding
diff_RLAGL_Vector_cond1_3826	chr15	101454819	101455019	+	4.37260	NA	intron (NM_016879, intron 7 of 9)	intron (NM_016879, intron 7 of 9)	7174	NM_025487	66322	Mm.158111	NM_025487	ENSMUSG00000063971	1700011A15Rik	Krt88	RIKEN cDNA 1700011A15 gene	protein-coding
diff_RLAGL_Vector_cond1_6453	chr3	92033327	92033543	+	4.37252	NA	Intergenic	Intergenic	18852	NM_207247	242100	Mm.297406	NM_207247	ENSMUSG00000042244	Pglyrp3	Gm420	peptidoglycan recognition protein 3	protein-coding
diff_RLAGL_Vector_cond1_7637	chr5	35674324	35674525	+	4.37118	NA	intron (NM_030127, intron 1 of 8)	intron (NM_030127, intron 1 of 8)	5356	NM_030127	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding
diff_RLAGL_Vector_cond1_7280	chr4	124936838	124937092	+	4.37009	NA	promoter-TSS (NM_026560)	promoter-TSS (NM_026560)	-48	NM_026560	52276	Mm.28038	NM_026560	ENSMUSG00000028873	Cdca8	4831429J16Rik|AU044747|BOR|Borealin|D4Ertd421e|DasraB|MESRGP	cell division cycle associated 8	protein-coding
diff_RLAGL_Vector_cond1_5234	chr19	60890083	60890319	+	4.36960	NA	5' UTR (NM_018869, exon 1 of 16)	5' UTR (NM_018869, exon 1 of 16)	452	NM_018869	14773	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding
diff_RLAGL_Vector_cond1_118	chr1	33670297	33670510	+	4.36806	NA	promoter-TSS (NM_008922)	promoter-TSS (NM_008922)	579	NR_033199	67503	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA
diff_RLAGL_Vector_cond1_6113	chr2	178594210	178594612	+	4.36803	NA	Intergenic	Intergenic	163896	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding
diff_RLAGL_Vector_cond1_2597	chr13	24261144	24261366	+	4.36781	NA	intron (NM_001311122, intron 2 of 37)	intron (NM_001311122, intron 2 of 37)	19535	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Lrrc16a	1110037D04Rik|AI425970|CARMIL|D130057M20|Lrrc16	leucine rich repeat containing 16A	protein-coding
diff_RLAGL_Vector_cond1_8594	chr6	119642516	119642731	+	4.36713	NA	intron (NM_053204, intron 17 of 20)	intron (NM_053204, intron 17 of 20)	-98276	NM_009525	22419	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding
diff_RLAGL_Vector_cond1_1516	chr11	16737516	16737740	+	4.36650	NA	Intergenic	L1ME1|LINE|L1	-14575	NM_207655	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding
diff_RLAGL_Vector_cond1_7797	chr5	75248330	75248577	+	4.36583	NA	Intergenic	MIRc|SINE|MIR	71622	NR_105992	102465620		NR_105992	ENSMUSG00000099060	Mir7025	Gm27860|mmu-mir-7025	microRNA 7025	ncRNA
diff_RLAGL_Vector_cond1_4048	chr16	57167197	57167511	+	4.36479	NA	promoter-TSS (NM_023175)	promoter-TSS (NM_023175)	-22	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding
diff_RLAGL_Vector_cond1_3937	chr16	33447010	33447215	+	4.36326	NA	intron (NM_011749, intron 4 of 8)	intron (NM_011749, intron 4 of 8)	66337	NM_011749	22661	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding
diff_RLAGL_Vector_cond1_3883	chr16	17977974	17978234	+	4.36295	NA	Intergenic	RLTR9E|LTR|ERVK	-2461	NM_016983	22363	Mm.377118	NM_016983	ENSMUSG00000059280	Vpreb2	CD179b|VpreB1|Vpreb-2	pre-B lymphocyte gene 2	protein-coding
diff_RLAGL_Vector_cond1_8317	chr6	51432529	51432928	+	4.36180	NA	promoter-TSS (NM_010903)	promoter-TSS (NM_010903)	58	NM_010903	18025	Mm.42138	NM_010903	ENSMUSG00000029832	Nfe2l3	Nrf3	nuclear factor, erythroid derived 2, like 3	protein-coding
diff_RLAGL_Vector_cond1_201	chr1	59481851	59482292	+	4.36128	NA	promoter-TSS (NM_008057)	promoter-TSS (NM_008057)	-76	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled homolog 7 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_2453	chr12	111951799	111952066	+	4.36128	NA	Intergenic	Intergenic	-7450	NR_029464	77675	Mm.98331	NR_029464		5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA
diff_RLAGL_Vector_cond1_7850	chr5	98843018	98843459	+	4.35938	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-11177	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding
diff_RLAGL_Vector_cond1_8889	chr7	28810648	28810999	+	4.35842	NA	promoter-TSS (NM_177301)	promoter-TSS (NM_177301)	-67	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding
diff_RLAGL_Vector_cond1_4802	chr18	32147599	32147934	+	4.35807	NA	Intergenic	Intergenic	-8196	NM_001042767	19123	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding
diff_RLAGL_Vector_cond1_1443	chr10	128923016	128923246	+	4.35805	NA	intron (NM_015740, intron 1 of 3)	CpG	393	NM_015740	14533	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding
diff_RLAGL_Vector_cond1_5544	chr2	69856474	69856709	+	4.35632	NA	Intergenic	Intergenic	-4971	NM_001110145	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding
diff_RLAGL_Vector_cond1_443	chr1	119189875	119190102	+	4.35534	NA	Intergenic	Intergenic	-136369	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding
diff_RLAGL_Vector_cond1_1748	chr11	74876894	74877120	+	4.35475	NA	intron (NM_197943, intron 2 of 22)	intron (NM_197943, intron 2 of 22)	-8813	NR_105891	102465558		NR_105891	ENSMUSG00000098317	Mir6926	Gm27949|mmu-mir-6926	microRNA 6926	ncRNA
diff_RLAGL_Vector_cond1_3274	chr14	98167235	98167469	+	4.35463	NA	intron (NM_007826, intron 1 of 11)	intron (NM_007826, intron 1 of 11)	2413	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8719	chr6	140208570	140208787	+	4.35440	NA	Intergenic	Intergenic	167153	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding
diff_RLAGL_Vector_cond1_9402	chr8	18990878	18991453	+	4.35352	NA	promoter-TSS (NM_181683)	promoter-TSS (NM_181683)	-110	NM_181683	353320	Mm.270483	NM_181683	ENSMUSG00000053695	Defb37	BD-37	defensin beta 37	protein-coding
diff_RLAGL_Vector_cond1_8860	chr7	24193215	24193488	+	4.35339	NA	TTS (NM_001310670)	TTS (NM_001310670)	10232	NM_001310670	56707	Mm.448367	NM_019940	ENSMUSG00000087598	Zfp111	-	zinc finger protein 111	protein-coding
diff_RLAGL_Vector_cond1_8973	chr7	48773394	48773645	+	4.35310	NA	Intergenic	Intergenic	-15484	NM_028031	243983	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding
diff_RLAGL_Vector_cond1_9433	chr8	26169094	26169339	+	4.35244	NA	Intergenic	Intergenic	11047	NM_199042	73754	Mm.383241	NM_199042		Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_9278	chr7	134022592	134022814	+	4.35225	NA	intron (NM_007400, intron 3 of 22)	MIR|SINE|MIR	202394	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna|mKIAA4001	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding
diff_RLAGL_Vector_cond1_3111	chr14	47128100	47128299	+	4.35155	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-12038	NR_126579	100038654		NR_126579	ENSMUSG00000072589	Gm10371	ENSMUSG00000072589	predicted gene 10371	ncRNA
diff_RLAGL_Vector_cond1_10176	chr9	80683195	80683514	+	4.35104	NA	Intergenic	Intergenic	-217916	NM_022016	63859	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding
diff_RLAGL_Vector_cond1_1778	chr11	80209475	80209724	+	4.35069	NA	intron (NM_021536, intron 1 of 18)	intron (NM_021536, intron 1 of 18)	544	NM_021536	59040	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog gene family, member T1	protein-coding
diff_RLAGL_Vector_cond1_114	chr1	31094817	31095217	+	4.35045	NA	Intergenic	Intergenic	-81418	NM_153601	266744	Mm.389093	NM_153601	ENSMUSG00000050217	Lgsn	Gluld1|Lgs|lengsin	lengsin, lens protein with glutamine synthetase domain	protein-coding
diff_RLAGL_Vector_cond1_4223	chr16	97605994	97606218	+	4.35018	NA	intron (NM_015775, intron 1 of 13)	intron (NM_015775, intron 1 of 13)	5089	NM_015775	50528	Mm.276145	NM_015775	ENSMUSG00000000385	Tmprss2	D16Ertd61e	transmembrane protease, serine 2	protein-coding
diff_RLAGL_Vector_cond1_2145	chr12	28649555	28649756	+	4.34974	NA	promoter-TSS (NR_104608)	promoter-TSS (NR_104608)	53	NR_104608	19819	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding
diff_RLAGL_Vector_cond1_5186	chr19	47432425	47432696	+	4.34926	NA	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	31851	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding
diff_RLAGL_Vector_cond1_2176	chr12	35927017	35927219	+	4.34896	NA	intron (NM_207531, intron 1 of 7)	intron (NM_207531, intron 1 of 7)	1497	NM_207531	403205	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding
diff_RLAGL_Vector_cond1_4292	chr17	17910213	17910445	+	4.34831	NA	Intergenic	CpG	22505	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding
diff_RLAGL_Vector_cond1_9441	chr8	27260075	27260423	+	4.34825	NA	promoter-TSS (NM_007918)	promoter-TSS (NM_007918)	-78	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_7193	chr4	108427995	108428243	+	4.34820	NA	Intergenic	Intergenic	-21406	NM_024198	67305	Mm.20164	NM_024198		Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding
diff_RLAGL_Vector_cond1_2541	chr13	10360846	10361051	+	4.34819	NA	promoter-TSS (NM_033269)	promoter-TSS (NM_033269)	-145	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding
diff_RLAGL_Vector_cond1_9154	chr7	102267228	102267574	+	4.34689	NA	promoter-TSS (NM_009287)	promoter-TSS (NM_009287)	-423	NM_009287	20866	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding
diff_RLAGL_Vector_cond1_4899	chr18	57877996	57878290	+	4.34688	NA	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	-535	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding
diff_RLAGL_Vector_cond1_5001	chr18	80707559	80707791	+	4.34684	NA	intron (NM_198429, intron 1 of 9)	CpG	498	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding
diff_RLAGL_Vector_cond1_274	chr1	74773110	74773374	+	4.34682	NA	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	1350	NM_009526	22420	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding
diff_RLAGL_Vector_cond1_1081	chr10	60346738	60346969	+	4.34661	NA	promoter-TSS (NM_028732)	promoter-TSS (NM_028732)	2	NM_001159572	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding
diff_RLAGL_Vector_cond1_886	chr10	12548678	12548969	+	4.34630	NA	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	312912	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding
diff_RLAGL_Vector_cond1_397	chr1	105337516	105337766	+	4.34602	NA	intron (NM_001160368, intron 1 of 1)	Lx8|LINE|L1	19069	NM_178779	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding
diff_RLAGL_Vector_cond1_6968	chr4	49520978	49521189	+	4.34585	NA	promoter-TSS (NM_001289901)	promoter-TSS (NM_001289901)	0	NM_178603	28028	Mm.30052	NM_178603	ENSMUSG00000044018	Mrpl50	AA408971|AI317351|D4Wsu125e	mitochondrial ribosomal protein L50	protein-coding
diff_RLAGL_Vector_cond1_6447	chr3	89872297	89872557	+	4.34495	NA	intron (NM_001310676, intron 9 of 9)	intron (NM_001310676, intron 9 of 9)	40769	NM_010559	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding
diff_RLAGL_Vector_cond1_1053	chr10	54073585	54073789	+	4.34382	NA	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	2109	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding
diff_RLAGL_Vector_cond1_7506	chr5	3342370	3342699	+	4.34360	NA	Intergenic	CpG	-1359	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding
diff_RLAGL_Vector_cond1_6252	chr3	36613158	36613384	+	4.34297	NA	exon (NM_027810, exon 1 of 19)	exon (NM_027810, exon 1 of 19)	118	NM_027810	71492	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding
diff_RLAGL_Vector_cond1_5370	chr2	29124750	29125212	+	4.34279	NA	promoter-TSS (NM_198033)	promoter-TSS (NM_198033)	-11	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding
diff_RLAGL_Vector_cond1_3476	chr15	16728786	16729056	+	4.34208	NA	Intergenic	Intergenic	-49180	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
diff_RLAGL_Vector_cond1_1897	chr11	102881099	102881373	+	4.34129	NA	promoter-TSS (NM_011431)	promoter-TSS (NM_011431)	-8	NM_028492	73293	Mm.67659	NM_028492	ENSMUSG00000020930	Ccdc103	1700039D13Rik	coiled-coil domain containing 103	protein-coding
diff_RLAGL_Vector_cond1_233	chr1	66940840	66941198	+	4.34091	NA	intron (NM_021285, intron 1 of 6)	intron (NM_021285, intron 1 of 6)	4037	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_9264	chr7	132576342	132576594	+	4.34033	NA	promoter-TSS (NM_016978)	promoter-TSS (NM_016978)	-70	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874	ornithine aminotransferase	protein-coding
diff_RLAGL_Vector_cond1_5472	chr2	53191632	53191948	+	4.34025	NA	promoter-TSS (NM_018785)	promoter-TSS (NM_018785)	-294	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding
diff_RLAGL_Vector_cond1_5366	chr2	26933674	26933960	+	4.33843	NA	promoter-TSS (NM_011512)	promoter-TSS (NM_011512)	-252	NM_198628	279029	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3991	chr16	45353002	45353210	+	4.33842	NA	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	55947	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding
diff_RLAGL_Vector_cond1_6659	chr3	142395529	142395858	+	4.33831	NA	promoter-TSS (NM_001190852)	promoter-TSS (NM_001190852)	3	NM_001190856	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding
diff_RLAGL_Vector_cond1_1561	chr11	26200998	26201347	+	4.33751	NA	intron (NR_027973, intron 1 of 5)	(CACAG)n|Simple_repeat|Simple_repeat	-1068	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA
diff_RLAGL_Vector_cond1_3891	chr16	20672430	20672629	+	4.33749	NA	promoter-TSS (NM_145941)	promoter-TSS (NM_145941)	-198	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding
diff_RLAGL_Vector_cond1_4376	chr17	32993144	32993437	+	4.33623	NA	intron (NM_001045559, intron 1 of 3)	intron (NM_001045559, intron 1 of 3)	151	NM_001045559	240067	Mm.246667	NM_199020	ENSMUSG00000053390	Zfp952	BC057593|C920016K16Rik	zinc finger protein 952	protein-coding
diff_RLAGL_Vector_cond1_9102	chr7	83481673	83481954	+	4.33597	NA	Intergenic	Intergenic	-103118	NM_177695	233424	Mm.486619	NM_177695		Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding
diff_RLAGL_Vector_cond1_6684	chr3	145950344	145950560	+	4.33564	NA	Intergenic	Intergenic	12420	NM_025555	66421	Mm.25137	NM_025555		2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding
diff_RLAGL_Vector_cond1_9816	chr8	119841274	119841492	+	4.33527	NA	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-804	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding
diff_RLAGL_Vector_cond1_1786	chr11	82863546	82863798	+	4.33331	NA	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	7072	NM_001164570	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding
diff_RLAGL_Vector_cond1_5610	chr2	85172260	85172569	+	4.33272	NA	Intergenic	MIR3|SINE|MIR	24285	NM_001033346	241528	Mm.291095	NM_001033346	ENSMUSG00000075224	Lrrc55	A330097E02Rik|Gm351	leucine rich repeat containing 55	protein-coding
diff_RLAGL_Vector_cond1_9178	chr7	107594460	107595116	+	4.33207	NA	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-263	NM_008905	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding
diff_RLAGL_Vector_cond1_10418	chrX	38189611	38189882	+	4.33201	NA	promoter-TSS (NM_020256)	promoter-TSS (NM_020256)	-47	NM_001079513	56805	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding
diff_RLAGL_Vector_cond1_5745	chr2	120628822	120629156	+	4.33108	NA	Intergenic	Intergenic	19394	NM_001290807	66296	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding
diff_RLAGL_Vector_cond1_7141	chr4	97237262	97237472	+	4.33010	NA	Intergenic	Intergenic	-344576	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
diff_RLAGL_Vector_cond1_5368	chr2	27618523	27618769	+	4.32989	NA	Intergenic	Intergenic	-58555	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding
diff_RLAGL_Vector_cond1_8630	chr6	127269121	127269352	+	4.32956	NA	Intergenic	MIRb|SINE|MIR	38731	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA
diff_RLAGL_Vector_cond1_3137	chr14	55015300	55015580	+	4.32917	NA	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-14	NM_026890	68966	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding
diff_RLAGL_Vector_cond1_7156	chr4	100188187	100188389	+	4.32874	NA	intron (NM_001312690, intron 1 of 3)	intron (NM_001312690, intron 1 of 3)	92497	NM_013845	26563	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding
diff_RLAGL_Vector_cond1_5463	chr2	51830063	51830363	+	4.32868	NA	Intergenic	Intergenic	-98204	NR_040639	433426	Mm.244381	NR_040639	ENSMUSG00000085014	Gm13490	OTTMUSG00000012405	predicted gene 13490	ncRNA
diff_RLAGL_Vector_cond1_6982	chr4	53011864	53012201	+	4.32867	NA	exon (NM_025623, exon 1 of 6)	exon (NM_025623, exon 1 of 6)	108	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_5784	chr2	130638292	130638694	+	4.32792	NA	intron (NM_001291027, intron 1 of 4)	intron (NM_001291027, intron 1 of 4)	4351	NM_001291027	241638	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding
diff_RLAGL_Vector_cond1_5399	chr2	33131026	33131339	+	4.32783	NA	Intergenic	Intergenic	-43978	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding
diff_RLAGL_Vector_cond1_1167	chr10	80539065	80539388	+	4.32765	NA	promoter-TSS (NM_026094)	promoter-TSS (NM_026094)	-102	NM_026094	67331	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding
diff_RLAGL_Vector_cond1_4150	chr16	84972599	84973041	+	4.32757	NA	intron (NR_045889, intron 1 of 3)	intron (NR_045889, intron 1 of 3)	609	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA
diff_RLAGL_Vector_cond1_4066	chr16	62753661	62753935	+	4.32687	NA	intron (NM_178925, intron 5 of 5)	intron (NM_178925, intron 5 of 5)	32918	NM_178925	106338	Mm.26321	NM_178925		Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding
diff_RLAGL_Vector_cond1_2800	chr13	70993608	70993811	+	4.32624	NA	Intergenic	Intergenic	110761	NM_029873	77166	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding
diff_RLAGL_Vector_cond1_5105	chr19	18595551	18595905	+	4.32611	NA	intron (NM_017375, intron 3 of 9)	L1MC5|LINE|L1	36085	NM_017375	20409	Mm.172222	NM_017375		Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding
diff_RLAGL_Vector_cond1_5188	chr19	47536960	47537308	+	4.32567	NA	promoter-TSS (NM_175360)	promoter-TSS (NM_175360)	-114	NM_175360	108689	Mm.218048	NM_175360	ENSMUSG00000042694	Obfc1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|RPA-32	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding
diff_RLAGL_Vector_cond1_8683	chr6	135200292	135200582	+	4.32361	NA	intron (NM_028982, intron 1 of 12)	intron (NM_028982, intron 1 of 12)	2450	NM_028982	74525	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|Kiaa1467|mKIAA1467	family with sequence similarity 234, member B	protein-coding
diff_RLAGL_Vector_cond1_5387	chr2	31670573	31670832	+	4.32343	NA	promoter-TSS (NM_144886)	promoter-TSS (NM_144886)	-35	NM_144886	227715	Mm.150972	NM_144886	ENSMUSG00000039356	Exosc2	Rrp4	exosome component 2	protein-coding
diff_RLAGL_Vector_cond1_5857	chr2	140896827	140897051	+	4.32287	NA	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-225463	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_1759	chr11	76217221	76217432	+	4.32059	NA	promoter-TSS (NM_021294)	promoter-TSS (NM_021294)	246	NM_177367	276919	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem (nuclear organelle) associated protein 4	protein-coding
diff_RLAGL_Vector_cond1_5485	chr2	58357385	58358083	+	4.32039	NA	promoter-TSS (NM_001111030)	promoter-TSS (NM_001111030)	24	NM_001111030	269275	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding
diff_RLAGL_Vector_cond1_8403	chr6	72380161	72380430	+	4.32035	NA	intron (NM_016872, intron 1 of 2)	CpG	173	NM_001080742	53620	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding
diff_RLAGL_Vector_cond1_5425	chr2	44951817	44952028	+	4.32001	NA	Intergenic	Intergenic	71255	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA
diff_RLAGL_Vector_cond1_8585	chr6	118066210	118066415	+	4.31974	NA	promoter-TSS (NM_027526)	promoter-TSS (NM_027526)	-73	NM_027526	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding
diff_RLAGL_Vector_cond1_885	chr10	12488610	12488826	+	4.31909	NA	intron (NM_011682, intron 53 of 73)	intron (NM_011682, intron 53 of 73)	373017	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding
diff_RLAGL_Vector_cond1_5145	chr19	34527362	34527563	+	4.31833	NA	promoter-TSS (NM_001111100)	promoter-TSS (NM_001111100)	12	NM_021460	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding
diff_RLAGL_Vector_cond1_10204	chr9	88438972	88439240	+	4.31799	NA	promoter-TSS (NM_172926)	promoter-TSS (NM_172926)	-155	NM_172926	244962	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding
diff_RLAGL_Vector_cond1_336	chr1	88130344	88130663	+	4.31773	NA	intron (NM_201410, intron 2 of 5)	intron (NM_201410, intron 2 of 5)	-4306	NM_145079	94284	Mm.300095	NM_145079		Ugt1a6a	UDPGT|UDPGT 1-6|UGT1-06|UGT1.6|Ugt1a6|Ugt1a7	UDP glucuronosyltransferase 1 family, polypeptide A6A	protein-coding
diff_RLAGL_Vector_cond1_10566	chrX	142390569	142390932	+	4.31772	NA	promoter-TSS (NM_207625)	promoter-TSS (NM_207625)	-215	NM_019477	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding
diff_RLAGL_Vector_cond1_4752	chr18	14682566	14682857	+	4.31681	NA	exon (NM_001161369, exon 1 of 10)	exon (NM_001161369, exon 1 of 10)	203	NM_001161370	268996	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	synovial sarcoma translocation, Chromosome 18	protein-coding
diff_RLAGL_Vector_cond1_1741	chr11	73138170	73138521	+	4.31659	NA	promoter-TSS (NM_010353)	promoter-TSS (NM_010353)	-51	NM_010353	14841	Mm.42045	NM_010353	ENSMUSG00000050107	Gsg2	Haspin	germ cell-specific gene 2	protein-coding
diff_RLAGL_Vector_cond1_10463	chrX	75875051	75875311	+	4.31564	NA	promoter-TSS (NM_145629)	promoter-TSS (NM_145629)	-11	NM_001166453	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding
diff_RLAGL_Vector_cond1_2610	chr13	28992281	28992624	+	4.31521	NA	Intergenic	Intergenic	-21962	NR_045077	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA
diff_RLAGL_Vector_cond1_8134	chr6	3470758	3471004	+	4.31510	NA	intron (NM_178899, intron 4 of 9)	intron (NM_178899, intron 4 of 9)	23617	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding
diff_RLAGL_Vector_cond1_6022	chr2	166175202	166175474	+	4.31499	NA	Intergenic	Intergenic	-19655	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding
diff_RLAGL_Vector_cond1_4893	chr18	56975381	56975733	+	4.31481	NA	promoter-TSS (NM_029909)	promoter-TSS (NM_029909)	-178	NM_029909	77422	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding
diff_RLAGL_Vector_cond1_10397	chrX	9662678	9662920	+	4.31431	NA	intron (NM_025975, intron 1 of 4)	intron (NM_025975, intron 1 of 4)	184	NM_025975	67117	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding
diff_RLAGL_Vector_cond1_2888	chr13	98423981	98424321	+	4.31306	NA	TTS (NR_045498)	TTS (NR_045498)	10914	NR_045498	70090	Mm.410857	NR_045498	ENSMUSG00000099446	2310005E17Rik	-	RIKEN cDNA 2310005E17 gene	ncRNA
diff_RLAGL_Vector_cond1_7660	chr5	39658531	39658904	+	4.31213	NA	Intergenic	Intergenic	-14086	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_577	chr1	152790871	152791158	+	4.31199	NA	Intergenic	Intergenic	-9139	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding
diff_RLAGL_Vector_cond1_5032	chr18	87649037	87649326	+	4.31169	NA	Intergenic	RLTR10D|LTR|ERVK	937116	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding
diff_RLAGL_Vector_cond1_7792	chr5	74692509	74692721	+	4.31151	NA	intron (NM_001159577, intron 1 of 10)	intron (NM_001159577, intron 1 of 10)	10288	NM_001159577	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding
diff_RLAGL_Vector_cond1_5507	chr2	61805566	61805807	+	4.31112	NA	intron (NM_009322, intron 1 of 5)	CpG	1233	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding
diff_RLAGL_Vector_cond1_3639	chr15	63998010	63998248	+	4.31093	NA	intron (NM_144846, intron 1 of 11)	CpG	62319	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding
diff_RLAGL_Vector_cond1_7958	chr5	118809627	118810140	+	4.30982	NA	Intergenic	Intergenic	-142456	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA
diff_RLAGL_Vector_cond1_9055	chr7	72990692	72991211	+	4.30945	NA	Intergenic	Intergenic	111117	NR_046024	625243	Mm.261798	NR_046024		Gm6567	-	predicted gene 6567	ncRNA
diff_RLAGL_Vector_cond1_6305	chr3	55089345	55089718	+	4.30840	NA	Intergenic	RLTR42-int|LTR|ERVK	-22577	NM_144895	229285	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding
diff_RLAGL_Vector_cond1_7751	chr5	64750407	64750620	+	4.30832	NA	Intergenic	Intergenic	-53010	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding
diff_RLAGL_Vector_cond1_7286	chr4	126096584	126096795	+	4.30770	NA	promoter-TSS (NM_138721)	promoter-TSS (NM_138721)	36	NM_138721	116748	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding
diff_RLAGL_Vector_cond1_8082	chr5	143213854	143214104	+	4.30710	NA	Intergenic	RLTR22_Mus|LTR|ERVK	11903	NM_029048	74673	Mm.273303	NM_029048	ENSMUSG00000039296	Spdye4a	4930445A17Rik|4930451F05Rik|RINGO E4A|Spdy2|Spdye4|Spy/Ringo B|spdyb	speedy/RINGO cell cycle regulator family, member E4A	protein-coding
diff_RLAGL_Vector_cond1_9170	chr7	105633577	105633922	+	4.30676	NA	promoter-TSS (NM_001285871)	promoter-TSS (NM_001285871)	-178	NM_001285873	55992	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding
diff_RLAGL_Vector_cond1_6726	chr3	152036969	152037199	+	4.30656	NA	Intergenic	L1_Mus3|LINE|L1	128816	NM_016867	54120	Mm.97	NM_016867		Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding
diff_RLAGL_Vector_cond1_7903	chr5	109556765	109557108	+	4.30654	NA	intron (NM_001310694, intron 3 of 7)	CpG-11313	2057	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding
diff_RLAGL_Vector_cond1_589	chr1	155013780	155013998	+	4.30596	NA	Intergenic	Intergenic	85747	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding
diff_RLAGL_Vector_cond1_6440	chr3	88493081	88493425	+	4.30561	NA	promoter-TSS (NM_019390)	promoter-TSS (NM_019390)	59	NM_019390	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding
diff_RLAGL_Vector_cond1_8541	chr6	108777750	108777964	+	4.30384	NA	Intergenic	RMER13B|LTR|ERVK	-5202	NM_026011	67166	Mm.271178	NM_026011		Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding
diff_RLAGL_Vector_cond1_3895	chr16	21370026	21370426	+	4.30372	NA	Intergenic	Intergenic	-36870	NR_131983	76222	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo
diff_RLAGL_Vector_cond1_361	chr1	92130534	92130811	+	4.30318	NA	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	49669	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding
diff_RLAGL_Vector_cond1_6715	chr3	149112093	149112637	+	4.30282	NA	Intergenic	Intergenic	-157730	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_5941	chr2	152398718	152398999	+	4.30197	NA	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	-812	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding
diff_RLAGL_Vector_cond1_291	chr1	78269676	78269915	+	4.30174	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-40551	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding
diff_RLAGL_Vector_cond1_7380	chr4	139535370	139535576	+	4.30144	NA	intron (NM_183148, intron 3 of 11)	intron (NM_183148, intron 3 of 11)	4925	NM_183148	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding
diff_RLAGL_Vector_cond1_1096	chr10	67979385	67979848	+	4.30101	NA	promoter-TSS (NM_001081346)	promoter-TSS (NM_001081346)	18	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding
diff_RLAGL_Vector_cond1_3950	chr16	37011565	37011831	+	4.30101	NA	promoter-TSS (NM_029977)	promoter-TSS (NM_029977)	-88	NM_001159369	77782	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding
diff_RLAGL_Vector_cond1_638	chr1	165194408	165194670	+	4.30097	NA	promoter-TSS (NM_145512)	promoter-TSS (NM_145512)	-106	NM_145512	108735	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_1127	chr10	75036967	75037202	+	4.30044	NA	promoter-TSS (NM_029781)	promoter-TSS (NM_029781)	-5	NM_029781	76877	Mm.133593	NM_029781	ENSMUSG00000020175	Rab36	6330593L16Rik|AW047545	RAB36, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_8483	chr6	92091321	92091599	+	4.29983	NA	promoter-TSS (NM_011630)	promoter-TSS (NM_011630)	42	NM_011630	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding
diff_RLAGL_Vector_cond1_1332	chr10	111074005	111074225	+	4.29945	NA	Intergenic	Intergenic	-64049	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding
diff_RLAGL_Vector_cond1_9850	chr8	124793199	124793487	+	4.29786	NA	5' UTR (NM_198632, exon 1 of 10)	5' UTR (NM_198632, exon 1 of 10)	324	NM_198632	330863	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding
diff_RLAGL_Vector_cond1_6993	chr4	55604906	55605125	+	4.29779	NA	Intergenic	Intergenic	-72540	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding
diff_RLAGL_Vector_cond1_3755	chr15	88862118	88862550	+	4.29756	NA	5' UTR (NM_145478, exon 1 of 6)	5' UTR (NM_145478, exon 1 of 6)	140	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding
diff_RLAGL_Vector_cond1_8777	chr6	148194596	148194797	+	4.29739	NA	intron (NM_001286560, intron 7 of 12)	intron (NM_001286560, intron 7 of 12)	-17592	NR_015615	320737	Mm.137858	NR_015615		4732416N19Rik	-	RIKEN cDNA 4732416N19 gene	ncRNA
diff_RLAGL_Vector_cond1_5185	chr19	46707361	46707657	+	4.29684	NA	promoter-TSS (NM_020577)	promoter-TSS (NM_020577)	66	NM_020577	57344	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding
diff_RLAGL_Vector_cond1_8705	chr6	137754611	137754819	+	4.29676	NA	intron (NM_172733, intron 1 of 8)	intron (NM_172733, intron 1 of 8)	138	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_9605	chr8	70476794	70477410	+	4.29646	NA	promoter-TSS (NM_001122830)	promoter-TSS (NM_001122830)	-159	NM_178771	234378	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding
diff_RLAGL_Vector_cond1_2763	chr13	67094044	67094293	+	4.29608	NA	intron (NM_001012325, intron 1 of 3)	RLTR17D_Mm|LTR|ERVK	3808	NM_001012449	432769	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding
diff_RLAGL_Vector_cond1_9616	chr8	71800873	71801119	+	4.29548	NA	Intergenic	Intergenic	-75315	NR_028267	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding
diff_RLAGL_Vector_cond1_7935	chr5	114374466	114374778	+	4.29486	NA	intron (NM_026145, intron 2 of 6)	intron (NM_026145, intron 2 of 6)	5883	NM_026145	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding
diff_RLAGL_Vector_cond1_6942	chr4	44072480	44072747	+	4.29466	NA	promoter-TSS (NM_001190414)	promoter-TSS (NM_001190414)	60	NM_001190414	50798	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding
diff_RLAGL_Vector_cond1_6051	chr2	170270377	170270602	+	4.29456	NA	Intergenic	Intergenic	-85872	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA
diff_RLAGL_Vector_cond1_7820	chr5	87337091	87337544	+	4.29423	NA	promoter-TSS (NM_028094)	promoter-TSS (NM_028094)	-122	NM_028094	72094	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding
diff_RLAGL_Vector_cond1_1429	chr10	127764099	127764381	+	4.29316	NA	intron (NM_080436, intron 2 of 3)	intron (NM_080436, intron 2 of 3)	4477	NM_080436	107605	Mm.484271	NM_080436	ENSMUSG00000089789	Rdh1	-	retinol dehydrogenase 1 (all trans)	protein-coding
diff_RLAGL_Vector_cond1_7336	chr4	133898457	133898825	+	4.29253	NA	Intergenic	Intergenic	-10844	NM_009097	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_5863	chr2	141708090	141708310	+	4.29234	NA	intron (NM_001013802, intron 6 of 18)	intron (NM_001013802, intron 6 of 18)	-1036724	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_7988	chr5	129924868	129925262	+	4.29190	NA	Intergenic	Intergenic	16525	NM_026916	69034	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik	nuclear protein transcriptional regulator 1 like	protein-coding
diff_RLAGL_Vector_cond1_4453	chr17	47687747	47687966	+	4.29126	NA	TTS (NM_001290337)	TTS (NM_001290337)	246	NR_045945	100415787	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|OTTMUSG00000018355|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_9212	chr7	121034337	121034701	+	4.29031	NA	promoter-TSS (NM_021554)	promoter-TSS (NM_021554)	74	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding
diff_RLAGL_Vector_cond1_9421	chr8	23912068	23912477	+	4.28986	NA	intron (NM_177086, intron 4 of 6)	intron (NM_177086, intron 4 of 6)	242611	NM_001277239	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding
diff_RLAGL_Vector_cond1_97	chr1	24295342	24295545	+	4.28940	NA	intron (NM_007733, intron 41 of 50)	intron (NM_007733, intron 41 of 50)	100240	NM_001290691	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding
diff_RLAGL_Vector_cond1_3050	chr14	24650952	24651154	+	4.28927	NA	Intergenic	Intergenic	160372	NM_207634	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding
diff_RLAGL_Vector_cond1_9206	chr7	118855409	118856188	+	4.28920	NA	promoter-TSS (NM_001168220)	promoter-TSS (NM_001168220)	23	NM_001081446	434232	Mm.458509	NM_001081446	ENSMUSG00000073856	Iqck	A230094G09Rik	IQ motif containing K	protein-coding
diff_RLAGL_Vector_cond1_5440	chr2	48399249	48399498	+	4.28834	NA	Intergenic	MIRb|SINE|MIR	-414736	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
diff_RLAGL_Vector_cond1_3387	chr14	121798485	121798713	+	4.28829	NA	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-865	NM_134074	105445	Mm.441054	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding
diff_RLAGL_Vector_cond1_2107	chr12	17505989	17506204	+	4.28663	NA	Intergenic	Intergenic	-38777	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding
diff_RLAGL_Vector_cond1_10328	chr9	117016597	117016918	+	4.28608	NA	intron (NM_001172122, intron 3 of 13)	intron (NM_001172122, intron 3 of 13)	235726	NM_001172124	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding
diff_RLAGL_Vector_cond1_3848	chr16	5134636	5135078	+	4.28604	NA	Intergenic	Intergenic	-2376	NM_008909	19041	Mm.266875	NM_008909	ENSMUSG00000039457	Ppl	AW553870	periplakin	protein-coding
diff_RLAGL_Vector_cond1_7841	chr5	95925590	95925917	+	4.28600	NA	Intergenic	Intergenic	-31186	NM_018866	55985	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding
diff_RLAGL_Vector_cond1_6010	chr2	163620581	163620821	+	4.28564	NA	Intergenic	Intergenic	13489	NM_001305803	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding
diff_RLAGL_Vector_cond1_7287	chr4	126103078	126103459	+	4.28559	NA	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-689	NM_001145827	74178	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding
diff_RLAGL_Vector_cond1_9308	chr7	140913200	140913428	+	4.28461	NA	Intergenic	Intergenic	7250	NR_015583	212965	Mm.387212	NR_015583		BC024386	BC039766	cDNA sequence BC023486	ncRNA
diff_RLAGL_Vector_cond1_6839	chr4	13743062	13743527	+	4.28312	NA	promoter-TSS (NM_001111026)	promoter-TSS (NM_001111026)	-8	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
diff_RLAGL_Vector_cond1_5965	chr2	155869735	155869973	+	4.28306	NA	intron (NR_024487, intron 7 of 9)	intron (NR_024487, intron 7 of 9)	-35000	NM_027788	71405	Mm.260918	NM_027788		Fam83c	5530400B04Rik	family with sequence similarity 83, member C	protein-coding
diff_RLAGL_Vector_cond1_8818	chr7	12834559	12834808	+	4.28292	NA	promoter-TSS (NM_022981)	promoter-TSS (NM_022981)	-127	NM_022981	65020	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding
diff_RLAGL_Vector_cond1_4982	chr18	77934207	77934427	+	4.28185	NA	Intergenic	Intergenic	-4150	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_5606	chr2	85060343	85060547	+	4.28081	NA	intron (NM_001081260, intron 5 of 11)	MIR|SINE|MIR	9985	NM_001081260	228140	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_989	chr10	36546715	36546948	+	4.28053	NA	intron (NM_001253356, intron 1 of 4)	intron (NM_001253356, intron 1 of 4)	40024	NM_001253355	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
diff_RLAGL_Vector_cond1_596	chr1	156474203	156474402	+	4.28028	NA	promoter-TSS (NM_009230)	promoter-TSS (NM_009230)	26	NM_009230	20652	Mm.28099	NM_009230		Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_10356	chr9	120776672	120776964	+	4.28008	NA	Intergenic	Intergenic	138432	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA
diff_RLAGL_Vector_cond1_9263	chr7	132513498	132513847	+	4.27988	NA	Intergenic	Intergenic	62726	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874	ornithine aminotransferase	protein-coding
diff_RLAGL_Vector_cond1_7886	chr5	104459613	104459843	+	4.27883	NA	exon (NM_008861, exon 1 of 15)	exon (NM_008861, exon 1 of 15)	271	NM_008861	18764	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding
diff_RLAGL_Vector_cond1_8743	chr6	143530850	143531087	+	4.27826	NA	Intergenic	Intergenic	120320	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA
diff_RLAGL_Vector_cond1_404	chr1	106629566	106629783	+	4.27733	NA	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-83043	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA
diff_RLAGL_Vector_cond1_5750	chr2	121866560	121866827	+	4.27615	NA	promoter-TSS (NM_199038)	promoter-TSS (NM_199038)	-277	NM_177054	319996	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding
diff_RLAGL_Vector_cond1_8632	chr6	127326328	127326597	+	4.27610	NA	Intergenic	Intergenic	-18495	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA
diff_RLAGL_Vector_cond1_10082	chr9	51009163	51009390	+	4.27583	NA	promoter-TSS (NM_178710)	promoter-TSS (NM_178710)	-203	NM_178710	235344	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding
diff_RLAGL_Vector_cond1_5122	chr19	24652436	24652652	+	4.27419	NA	Intergenic	Intergenic	-21464	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding
diff_RLAGL_Vector_cond1_7643	chr5	36484219	36484649	+	4.27376	NA	promoter-TSS (NM_001170454)	promoter-TSS (NM_001170454)	-149	NM_001170454	231151	Mm.421558	NM_001170454	ENSMUSG00000029196	Tada2b	AA474455|Gm145	transcriptional adaptor 2B	protein-coding
diff_RLAGL_Vector_cond1_6445	chr3	89299546	89299953	+	4.27335	NA	Intergenic	Intergenic	-18798	NM_001162425	13636	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding
diff_RLAGL_Vector_cond1_7255	chr4	120143008	120143247	+	4.27316	NA	Intergenic	Intergenic	-18297	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	VIC	endothelin 2	protein-coding
diff_RLAGL_Vector_cond1_6832	chr4	12810283	12810504	+	4.27302	NA	Intergenic	Intergenic	-96444	NM_173746	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
diff_RLAGL_Vector_cond1_1820	chr11	89152909	89153182	+	4.27263	NA	Intergenic	Intergenic	79204	NM_001033266	217071	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding
diff_RLAGL_Vector_cond1_4823	chr18	37218219	37218436	+	4.27240	NA	intron (NM_001301259, intron 1 of 3)	intron (NM_001301259, intron 1 of 3)	-46671	NM_053126	93872	Mm.196703	NM_053126	ENSMUSG00000051663	Pcdhb1	PcdhbA	protocadherin beta 1	protein-coding
diff_RLAGL_Vector_cond1_4646	chr17	84026288	84026521	+	4.27225	NA	Intergenic	Intergenic	27852	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA
diff_RLAGL_Vector_cond1_7396	chr4	141301155	141301370	+	4.27211	NA	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	41	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding
diff_RLAGL_Vector_cond1_746	chr1	182140057	182140370	+	4.27141	NA	Intergenic	Intergenic	15476	NM_012058	27058	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding
diff_RLAGL_Vector_cond1_4038	chr16	55934796	55935024	+	4.27141	NA	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	-62	NM_001159365	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding
diff_RLAGL_Vector_cond1_8994	chr7	56049946	56050222	+	4.27096	NA	promoter-TSS (NM_010418)	promoter-TSS (NM_010418)	-71	NM_010418	15204	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2	protein-coding
diff_RLAGL_Vector_cond1_9929	chr9	14699070	14699286	+	4.27082	NA	Intergenic	Intergenic	41555	NM_177905	330890	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding
diff_RLAGL_Vector_cond1_1129	chr10	75781160	75781415	+	4.27080	NA	5' UTR (NM_133994, exon 1 of 5)	5' UTR (NM_133994, exon 1 of 5)	127	NM_133994	103140	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding
diff_RLAGL_Vector_cond1_3719	chr15	79690293	79690737	+	4.27071	NA	promoter-TSS (NM_013818)	promoter-TSS (NM_013818)	-381	NM_013818	14904	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_3622	chr15	59831035	59831327	+	4.27062	NA	Intergenic	MIRc|SINE|MIR	-36222	NR_045076	100503021	Mm.402924	NR_045076		Gm19510	-	predicted gene, 19510	ncRNA
diff_RLAGL_Vector_cond1_2148	chr12	29675991	29676213	+	4.27055	NA	non-coding (NR_046080, exon 4 of 4)	non-coding (NR_046080, exon 4 of 4)	10343	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA
diff_RLAGL_Vector_cond1_5977	chr2	158159902	158160119	+	4.26947	NA	Intergenic	Intergenic	-13618	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding
diff_RLAGL_Vector_cond1_4702	chr17	93509234	93509488	+	4.26893	NA	Intergenic	Intergenic	310193	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_275	chr1	74808129	74808356	+	4.26789	NA	Intergenic	Intergenic	16223	NM_009518	22409	Mm.5130	NM_009518		Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding
diff_RLAGL_Vector_cond1_6733	chr3	152340115	152340457	+	4.26597	NA	5' UTR (NM_001162375, exon 1 of 14)	5' UTR (NM_001162375, exon 1 of 14)	121	NM_174868	215708	Mm.135018	NM_174868	ENSMUSG00000054942	Fam73a	A930038D06|AI852168|C030011O14Rik	family with sequence similarity 73, member A	protein-coding
diff_RLAGL_Vector_cond1_6614	chr3	131564531	131564793	+	4.26591	NA	promoter-TSS (NM_011863)	promoter-TSS (NM_011863)	-106	NM_011863	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
diff_RLAGL_Vector_cond1_10604	chrX	162102821	162103044	+	4.26536	NA	intron (NM_001290526, intron 1 of 8)	intron (NM_001290526, intron 1 of 8)	56509	NM_001081052	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding
diff_RLAGL_Vector_cond1_4877	chr18	50052829	50053084	+	4.26523	NA	promoter-TSS (NM_134131)	promoter-TSS (NM_134131)	-326	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2	tumor necrosis factor, alpha-induced protein 8	protein-coding
diff_RLAGL_Vector_cond1_3093	chr14	36932710	36933190	+	4.26480	NA	intron (NM_027045, intron 3 of 10)	RMER16|LTR|ERVK	2618	NM_028407	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding
diff_RLAGL_Vector_cond1_3713	chr15	78405764	78406062	+	4.26465	NA	promoter-TSS (NM_001162492)	promoter-TSS (NM_001162492)	-54	NM_009437	22117	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_6986	chr4	53826345	53826544	+	4.26364	NA	intron (NM_028053, intron 1 of 5)	intron (NM_028053, intron 1 of 5)	399	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding
diff_RLAGL_Vector_cond1_9214	chr7	121707550	121707818	+	4.26359	NA	promoter-TSS (NM_001033173)	promoter-TSS (NM_001033173)	-431	NM_001033173	76179	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding
diff_RLAGL_Vector_cond1_3225	chr14	76310424	76310675	+	4.26234	NA	Intergenic	Intergenic	-104412	NM_001310646	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding
diff_RLAGL_Vector_cond1_4809	chr18	34286485	34286799	+	4.26044	NA	intron (NM_007462, intron 7 of 15)	MTEa-int|LTR|ERVL-MaLR	-44503	NM_025527	66384	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding
diff_RLAGL_Vector_cond1_1712	chr11	66408300	66408558	+	4.25922	NA	intron (NM_001034874, intron 2 of 4)	ORR1D1-int|LTR|ERVL-MaLR	117697	NM_001034874	380702	Mm.351764	NM_001034874	ENSMUSG00000053930	Shisa6	Gm879	shisa family member 6	protein-coding
diff_RLAGL_Vector_cond1_9267	chr7	132610772	132611012	+	4.25890	NA	intron (NM_029609, intron 1 of 6)	CpG	249	NM_029609	76429	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding
diff_RLAGL_Vector_cond1_9756	chr8	106614738	106615031	+	4.25854	NA	intron (NM_009864, intron 2 of 15)	intron (NM_009864, intron 2 of 15)	11534	NM_009864	12550	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding
diff_RLAGL_Vector_cond1_5533	chr2	66634541	66634793	+	4.25764	NA	5' UTR (NM_001290674, exon 1 of 27)	5' UTR (NM_001290674, exon 1 of 27)	295	NM_001290675	20274	Mm.440889	NM_018852	ENSMUSG00000075316	Scn9a	Nav1.7|PN1|mKIAA4197	sodium channel, voltage-gated, type IX, alpha	protein-coding
diff_RLAGL_Vector_cond1_9827	chr8	120537104	120537423	+	4.25759	NA	promoter-TSS (NM_001145896)	promoter-TSS (NM_001145896)	-146	NM_001145896	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1	protein-coding
diff_RLAGL_Vector_cond1_6972	chr4	49845063	49845284	+	4.25702	NA	5' UTR (NM_001276355, exon 1 of 9)	5' UTR (NM_001276355, exon 1 of 9)	596	NM_001033351	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding
diff_RLAGL_Vector_cond1_3899	chr16	22439698	22440094	+	4.25684	NA	promoter-TSS (NM_023794)	promoter-TSS (NM_023794)	-326	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding
diff_RLAGL_Vector_cond1_3939	chr16	33739255	33739561	+	4.25682	NA	intron (NM_175256, intron 9 of 14)	intron (NM_175256, intron 9 of 14)	-54629	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding
diff_RLAGL_Vector_cond1_1624	chr11	43747947	43748152	+	4.25681	NA	promoter-TSS (NM_133795)	promoter-TSS (NM_133795)	-76	NM_133795	66827	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding
diff_RLAGL_Vector_cond1_7238	chr4	117288882	117289124	+	4.25646	NA	intron (NM_001310729, intron 5 of 13)	CpG	452	NM_001310731	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding
diff_RLAGL_Vector_cond1_6430	chr3	85765058	85765345	+	4.25595	NA	Intergenic	LTR101_Mam|LTR|ERVL	-18992	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding
diff_RLAGL_Vector_cond1_152	chr1	42851063	42851347	+	4.25441	NA	promoter-TSS (NM_023514)	promoter-TSS (NM_023514)	-28	NM_023514	69527	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding
diff_RLAGL_Vector_cond1_7140	chr4	96568167	96568377	+	4.25405	NA	TTS (NM_028979)	TTS (NM_028979)	-14621	NM_010008	13110	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding
diff_RLAGL_Vector_cond1_7113	chr4	88722417	88722672	+	4.25308	NA	promoter-TSS (NM_172871)	promoter-TSS (NM_172871)	-36	NM_172871	242521	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|ENSMUSG00000070923|mKIAA1354	kelch-like 9	protein-coding
diff_RLAGL_Vector_cond1_6511	chr3	105052901	105053262	+	4.25165	NA	promoter-TSS (NM_030249)	promoter-TSS (NM_030249)	65	NM_030249	80281	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding
diff_RLAGL_Vector_cond1_9556	chr8	56622545	56622960	+	4.25163	NA	Intergenic	Intergenic	71618	NM_015791	50753	Mm.251174	NM_015791		Fbxo8	Fbx8	F-box protein 8	protein-coding
diff_RLAGL_Vector_cond1_6836	chr4	13436372	13436669	+	4.25106	NA	Intergenic	Intergenic	-306782	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
diff_RLAGL_Vector_cond1_2073	chr12	11265900	11266221	+	4.25091	NA	promoter-TSS (NM_177331)	promoter-TSS (NM_177331)	174	NM_025695	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding
diff_RLAGL_Vector_cond1_8197	chr6	17883086	17883453	+	4.25070	NA	intron (NM_001289625, intron 9 of 15)	MTC|LTR|ERVL-MaLR	134099	NM_022332	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
diff_RLAGL_Vector_cond1_1531	chr11	19356161	19356380	+	4.24939	NA	Intergenic	MTEa-int|LTR|ERVL-MaLR	290995	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA
diff_RLAGL_Vector_cond1_1094	chr10	67785298	67786064	+	4.24900	NA	Intergenic	Intergenic	126981	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding
diff_RLAGL_Vector_cond1_9953	chr9	21411641	21411884	+	4.24853	NA	promoter-TSS (NR_045742)	promoter-TSS (NR_045742)	-42	NR_045742	330902	Mm.437044	NR_045742	ENSMUSG00000097665	Gm16853	4930565O14	predicted gene, 16853	ncRNA
diff_RLAGL_Vector_cond1_1629	chr11	45810700	45811176	+	4.24786	NA	intron (NR_045876, intron 1 of 3)	intron (NR_045876, intron 1 of 3)	2855	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA
diff_RLAGL_Vector_cond1_6843	chr4	15022466	15022719	+	4.24773	NA	intron (NM_178617, intron 5 of 12)	intron (NM_178617, intron 5 of 12)	91951	NM_001243100	100038514	Mm.331495	NM_001243100		Gm11837	OTTMUSG00000004551	predicted gene 11837	protein-coding
diff_RLAGL_Vector_cond1_1847	chr11	96065385	96065763	+	4.24650	NA	promoter-TSS (NM_172300)	promoter-TSS (NM_172300)	-210	NM_172300	268470	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z (putative)	protein-coding
diff_RLAGL_Vector_cond1_7777	chr5	72559593	72560063	+	4.24540	NA	promoter-TSS (NM_133921)	promoter-TSS (NM_133921)	-183	NM_133921	100978	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding
diff_RLAGL_Vector_cond1_56	chr1	15937504	15937780	+	4.24512	NA	Intergenic	MTC|LTR|ERVL-MaLR	-44920	NM_001033288	226866	Mm.131665	NM_001033288	ENSMUSG00000032719	Sbspon	Gm106|Rpesp	somatomedin B and thrombospondin, type 1 domain containing	protein-coding
diff_RLAGL_Vector_cond1_1011	chr10	40142051	40142321	+	4.24478	NA	promoter-TSS (NM_028247)	promoter-TSS (NM_028247)	68	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding
diff_RLAGL_Vector_cond1_3997	chr16	46496833	46497265	+	4.24419	NA	promoter-TSS (NM_021496)	promoter-TSS (NM_021496)	-82	NM_021497	58998	Mm.328072	NM_021495	ENSMUSG00000022656	Pvrl3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113	poliovirus receptor-related 3	protein-coding
diff_RLAGL_Vector_cond1_7197	chr4	109280454	109280706	+	4.24417	NA	intron (NM_007943, intron 1 of 24)	CpG	305	NM_007943	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding
diff_RLAGL_Vector_cond1_202	chr1	59684738	59684939	+	4.24363	NA	promoter-TSS (NM_018868)	promoter-TSS (NM_018868)	-168	NM_018868	55989	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding
diff_RLAGL_Vector_cond1_7017	chr4	63032656	63033022	+	4.24315	NA	intron (NM_028326, intron 1 of 14)	intron (NM_028326, intron 1 of 14)	67265	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding
diff_RLAGL_Vector_cond1_3066	chr14	28892587	28892822	+	4.24192	NA	Intergenic	Intergenic	-125504	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding
diff_RLAGL_Vector_cond1_1854	chr11	97187039	97187337	+	4.24157	NA	intron (NM_008379, intron 2 of 21)	CpG	704	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding
diff_RLAGL_Vector_cond1_7327	chr4	133369594	133369898	+	4.24100	NA	promoter-TSS (NR_039582)	promoter-TSS (NR_039582)	-26	NM_016981	20544	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding
diff_RLAGL_Vector_cond1_1960	chr11	115814656	115814888	+	4.24089	NA	promoter-TSS (NM_029557)	promoter-TSS (NM_029557)	33	NM_029557	76265	Mm.275438	NM_029557	ENSMUSG00000020781	Tsen54	0610034P02Rik	tRNA splicing endonuclease 54 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_10284	chr9	107709792	107710040	+	4.24010	NA	intron (NM_011349, intron 1 of 17)	CpG	559	NM_011349	20350	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding
diff_RLAGL_Vector_cond1_4359	chr17	29716827	29717231	+	4.23980	NA	promoter-TSS (NM_001163741)	promoter-TSS (NM_001163741)	-12	NM_001163741	68597	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding
diff_RLAGL_Vector_cond1_4202	chr16	93042892	93043248	+	4.23898	NA	Intergenic	Intergenic	-216996	NM_001111022	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_8834	chr7	15993904	15994113	+	4.23890	NA	intron (NM_001081418, intron 3 of 13)	MLT1F1|LTR|ERVL-MaLR	5487	NM_001081418	243842	Mm.440249	NM_001081418	ENSMUSG00000070808	Gltscr1	-	glioma tumor suppressor candidate region gene 1	protein-coding
diff_RLAGL_Vector_cond1_2277	chr12	65172571	65172963	+	4.23861	NA	promoter-TSS (NM_172578)	promoter-TSS (NM_172578)	-187	NM_172578	217653	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_3153	chr14	58168890	58169160	+	4.23746	NA	Intergenic	Intergenic	96339	NM_013518	14180	Mm.8846	NM_013518		Fgf9	Eks	fibroblast growth factor 9	protein-coding
diff_RLAGL_Vector_cond1_5947	chr2	153161167	153161410	+	4.23641	NA	promoter-TSS (NM_133847)	promoter-TSS (NM_133847)	-13	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding
diff_RLAGL_Vector_cond1_10365	chr9	121950540	121950771	+	4.23618	NA	promoter-TSS (NM_001199927)	promoter-TSS (NM_001199927)	-333	NM_177743	245050	Mm.71062	NM_177743	ENSMUSG00000038233	Fam198a	C730027P07Rik	family with sequence similarity 198, member A	protein-coding
diff_RLAGL_Vector_cond1_2501	chr12	119052147	119052359	+	4.23590	NA	Intergenic	Intergenic	-85832	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding
diff_RLAGL_Vector_cond1_1801	chr11	86587325	86587531	+	4.23583	NA	intron (NM_029478, intron 10 of 11)	intron (NM_029478, intron 10 of 11)	-3270	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA
diff_RLAGL_Vector_cond1_5124	chr19	26604800	26605005	+	4.23572	NA	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-258	NM_011416	67155	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
diff_RLAGL_Vector_cond1_6496	chr3	101670531	101670846	+	4.23562	NA	Intergenic	Intergenic	-65981	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding
diff_RLAGL_Vector_cond1_7573	chr5	21733108	21733317	+	4.23543	NA	Intergenic	Intergenic	-3948	NM_028431	73078	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding
diff_RLAGL_Vector_cond1_3693	chr15	75642103	75642304	+	4.23538	NA	Intergenic	Intergenic	25519	NM_011759	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding
diff_RLAGL_Vector_cond1_838	chr10	3741153	3741389	+	4.23452	NA	intron (NM_001159942, intron 1 of 16)	intron (NM_001159942, intron 1 of 16)	894	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding
diff_RLAGL_Vector_cond1_10107	chr9	59952001	59952252	+	4.23414	NA	intron (NM_001101600, intron 2 of 3)	intron (NM_001101600, intron 2 of 3)	832	NM_001101600	665389	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding
diff_RLAGL_Vector_cond1_7972	chr5	123058132	123058341	+	4.23301	NA	Intergenic	CpG	-11416	NM_029112	74890	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding
diff_RLAGL_Vector_cond1_1529	chr11	19255097	19255342	+	4.23285	NA	Intergenic	Intergenic	189944	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA
diff_RLAGL_Vector_cond1_8587	chr6	118138985	118139408	+	4.23195	NA	promoter-TSS (NM_030165)	promoter-TSS (NM_030165)	-56	NM_030165	78752	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_462	chr1	125560622	125560896	+	4.23165	NA	promoter-TSS (NM_028787)	promoter-TSS (NM_028787)	-257	NM_028787	74150	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding
diff_RLAGL_Vector_cond1_3127	chr14	50807478	50807939	+	4.23159	NA	promoter-TSS (NM_009632)	promoter-TSS (NM_009632)	63	NR_002142	85029		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA
diff_RLAGL_Vector_cond1_1309	chr10	107272044	107272308	+	4.23122	NA	promoter-TSS (NM_001284329)	promoter-TSS (NM_001284329)	-218	NM_001284329	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_5715	chr2	114013492	114013723	+	4.23121	NA	promoter-TSS (NM_010290)	promoter-TSS (NM_010290)	12	NM_010290	14617	Mm.389394	NM_010290	ENSMUSG00000068615	Gjd2	Gja9|connexin36|cx36	gap junction protein, delta 2	protein-coding
diff_RLAGL_Vector_cond1_8472	chr6	90683896	90684265	+	4.23034	NA	intron (NM_001134383, intron 3 of 13)	intron (NM_001134383, intron 3 of 13)	32449	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding
diff_RLAGL_Vector_cond1_2563	chr13	14063444	14063761	+	4.23021	NA	promoter-TSS (NM_194262)	promoter-TSS (NM_194262)	-182	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding
diff_RLAGL_Vector_cond1_830	chr1	194677887	194678156	+	4.23018	NA	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	58192	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding
diff_RLAGL_Vector_cond1_1805	chr11	87062175	87062378	+	4.22993	NA	intron (NM_025638, intron 2 of 9)	intron (NM_025638, intron 2 of 9)	11861	NM_025638	66569	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_4801	chr18	31804146	31804350	+	4.22939	NA	5' UTR (NM_028866, exon 1 of 22)	5' UTR (NM_028866, exon 1 of 22)	191	NM_028866	74320	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding
diff_RLAGL_Vector_cond1_5374	chr2	30199729	30200390	+	4.22813	NA	intron (NM_172404, intron 1 of 13)	Tigger6b|DNA|TcMar-Tigger	5640	NM_172404	70266	Mm.216089	NM_172404	ENSMUSG00000039648	Ccbl1	2010009K05Rik|AI182306|Gtk|Kat1|KatI	cysteine conjugate-beta lyase 1	protein-coding
diff_RLAGL_Vector_cond1_9958	chr9	21917901	21918499	+	4.22729	NA	promoter-TSS (NM_031874)	promoter-TSS (NM_031874)	-79	NM_031874	19340	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_3380	chr14	121035287	121035550	+	4.22715	NA	promoter-TSS (NM_134082)	promoter-TSS (NM_134082)	-156	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding
diff_RLAGL_Vector_cond1_1003	chr10	39370044	39370302	+	4.22703	NA	5' UTR (NM_001122892, exon 1 of 13)	5' UTR (NM_001122892, exon 1 of 13)	374	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_4011	chr16	50185111	50185329	+	4.22677	NA	Intergenic	Intergenic	-112368	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA
diff_RLAGL_Vector_cond1_9209	chr7	119892808	119893011	+	4.22668	NA	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	2549	NM_173408	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8052	chr5	137759925	137760315	+	4.22665	NA	TTS (NM_023910)	TTS (NM_023910)	14151	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding
diff_RLAGL_Vector_cond1_7331	chr4	133598681	133599020	+	4.22657	NA	Intergenic	Intergenic	3318	NM_018754	55948	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding
diff_RLAGL_Vector_cond1_1137	chr10	77509865	77510202	+	4.22604	NA	intron (NM_133998, intron 2 of 5)	intron (NM_133998, intron 2 of 5)	5780	NM_133998	108707	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding
diff_RLAGL_Vector_cond1_3361	chr14	118338095	118338370	+	4.22581	NA	Intergenic	Intergenic	-27646	NR_045624	73306	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA
diff_RLAGL_Vector_cond1_4805	chr18	33463978	33464324	+	4.22547	NA	promoter-TSS (NM_001109989)	promoter-TSS (NM_001109989)	-12	NR_045415	433171	Mm.353332	NR_045415		Gm10549	ENSMUSG00000073610	predicted gene 10549	ncRNA
diff_RLAGL_Vector_cond1_7298	chr4	127324883	127325088	+	4.22516	NA	TTS (NM_008126)	TTS (NM_008126)	4140	NM_008126	14620	Mm.90003	NM_008126	ENSMUSG00000042367	Gjb3	Cnx31|Cx31|D4Wsu144e|Gjb-3	gap junction protein, beta 3	protein-coding
diff_RLAGL_Vector_cond1_9990	chr9	30876592	30876829	+	4.22512	NA	Intergenic	Intergenic	45742	NM_001024139	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding
diff_RLAGL_Vector_cond1_4842	chr18	39778795	39779078	+	4.22501	NA	Intergenic	Intergenic	5439	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding
diff_RLAGL_Vector_cond1_1168	chr10	80561739	80561960	+	4.22464	NA	promoter-TSS (NM_025852)	promoter-TSS (NM_025852)	-289	NM_025852	66932	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Tceb3bp1	REX1, RNA exonuclease 1 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_9852	chr8	125734355	125734592	+	4.22462	NA	intron (NM_025636, intron 1 of 4)	CpG	270	NM_001310688	66566	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding
diff_RLAGL_Vector_cond1_10574	chrX	145543925	145544163	+	4.22421	NA	Intergenic	Intergenic	-56405	NM_001290274	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding
diff_RLAGL_Vector_cond1_3421	chr15	5116345	5116620	+	4.22308	NA	promoter-TSS (NM_026069)	promoter-TSS (NM_026069)	-131	NM_026069	67281	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding
diff_RLAGL_Vector_cond1_828	chr1	194620346	194620562	+	4.22234	NA	intron (NM_008882, intron 1 of 31)	CpG	625	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding
diff_RLAGL_Vector_cond1_1654	chr11	53567213	53567494	+	4.22224	NA	promoter-TSS (NM_008443)	promoter-TSS (NM_008443)	-16	NM_008443	16568	Mm.88694	NM_008443		Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding
diff_RLAGL_Vector_cond1_10170	chr9	78481821	78482368	+	4.22220	NA	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-370	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding
diff_RLAGL_Vector_cond1_1941	chr11	113223810	113224121	+	4.22214	NA	Intergenic	Intergenic	-14296	NR_040276	319871	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA
diff_RLAGL_Vector_cond1_4160	chr16	87432415	87432715	+	4.22212	NA	promoter-TSS (NM_001081068)	promoter-TSS (NM_001081068)	41	NM_001081068	78913	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding
diff_RLAGL_Vector_cond1_1422	chr10	127165088	127165422	+	4.22211	NA	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	99	NR_045166	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding
diff_RLAGL_Vector_cond1_803	chr1	191288803	191289028	+	4.22209	NA	Intergenic	Intergenic	29203	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding
diff_RLAGL_Vector_cond1_9143	chr7	99167935	99168144	+	4.22178	NA	intron (NM_026384, intron 2 of 7)	intron (NM_026384, intron 2 of 7)	14674	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding
diff_RLAGL_Vector_cond1_10600	chrX	160994311	160994689	+	4.22120	NA	intron (NM_001024624, intron 1 of 18)	CpG	181	NM_001024624	382253	Mm.443717	NM_001024624	ENSMUSG00000031292	Cdkl5	BC038161|Stk9	cyclin-dependent kinase-like 5	protein-coding
diff_RLAGL_Vector_cond1_2623	chr13	31506340	31506679	+	4.22088	NA	Intergenic	Intergenic	-51661	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding
diff_RLAGL_Vector_cond1_2964	chr13	117602374	117602668	+	4.22062	NA	5' UTR (NM_010408, exon 1 of 8)	5' UTR (NM_010408, exon 1 of 8)	201	NM_010408	15165	Mm.343429	NM_010408		Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding
diff_RLAGL_Vector_cond1_3732	chr15	83464233	83464705	+	4.22035	NA	5' UTR (NM_001159509, exon 1 of 11)	5' UTR (NM_001159509, exon 1 of 11)	137	NM_001159509	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding
diff_RLAGL_Vector_cond1_8377	chr6	65144729	65145003	+	4.22035	NA	promoter-TSS (NM_019455)	promoter-TSS (NM_019455)	-136	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding
diff_RLAGL_Vector_cond1_3631	chr15	61873314	61873652	+	4.21977	NA	Intergenic	Intergenic	-99032	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA
diff_RLAGL_Vector_cond1_7353	chr4	135272915	135273136	+	4.21973	NA	promoter-TSS (NM_013885)	promoter-TSS (NM_013885)	-265	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding
diff_RLAGL_Vector_cond1_7729	chr5	52609894	52610300	+	4.21916	NA	non-coding (NR_045738, exon 3 of 3)	non-coding (NR_045738, exon 3 of 3)	8914	NR_045738	211001	Mm.261581	NR_045738	ENSMUSG00000052295	8030423F21Rik	-	RIKEN cDNA 8030423F21 gene	ncRNA
diff_RLAGL_Vector_cond1_6615	chr3	131566370	131566632	+	4.21905	NA	intron (NM_001289477, intron 1 of 12)	intron (NM_001289477, intron 1 of 12)	469	NM_001289477	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding
diff_RLAGL_Vector_cond1_3287	chr14	100286192	100286508	+	4.21892	NA	Intergenic	Intergenic	-136554	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
diff_RLAGL_Vector_cond1_1630	chr11	45816683	45816939	+	4.21555	NA	intron (NR_045876, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	8728	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA
diff_RLAGL_Vector_cond1_166	chr1	45905139	45905729	+	4.21531	NA	Intergenic	Intergenic	20160	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding
diff_RLAGL_Vector_cond1_5166	chr19	42518787	42518993	+	4.21522	NA	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	85	NM_177464	52013	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding
diff_RLAGL_Vector_cond1_1910	chr11	104383524	104383743	+	4.21509	NA	intron (NM_001081045, intron 2 of 13)	intron (NM_001081045, intron 2 of 13)	58658	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding
diff_RLAGL_Vector_cond1_9151	chr7	101041557	101041852	+	4.21508	NA	Intergenic	Intergenic	-29651	NM_001302346	18442	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding
diff_RLAGL_Vector_cond1_6774	chr3	158405262	158405525	+	4.21491	NA	intron (NM_001081358, intron 3 of 27)	RLTR22_Mur|LTR|ERVK	156828	NM_001081358	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding
diff_RLAGL_Vector_cond1_2644	chr13	38089563	38089772	+	4.21464	NA	Intergenic	Intergenic	52678	NM_024242	71340	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1 (yeast)	protein-coding
diff_RLAGL_Vector_cond1_2011	chr11	120350333	120350621	+	4.21459	NA	intron (NR_038126, intron 1 of 1)	intron (NR_038126, intron 1 of 1)	1799	NR_038126	66838	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA
diff_RLAGL_Vector_cond1_1116	chr10	71225992	71226206	+	4.21436	NA	3' UTR (NM_009360, exon 7 of 7)	3' UTR (NM_009360, exon 7 of 7)	11945	NM_009360	21780	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_2994	chr14	8430847	8431177	+	4.21385	NA	TTS (NM_028934)	TTS (NM_028934)	-52249	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding
diff_RLAGL_Vector_cond1_8976	chr7	49195703	49196093	+	4.21384	NA	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-50291	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
diff_RLAGL_Vector_cond1_6505	chr3	103279000	103279237	+	4.21317	NA	promoter-TSS (NM_001079830)	promoter-TSS (NM_001079830)	-175	NM_053170	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding
diff_RLAGL_Vector_cond1_7936	chr5	114444023	114444336	+	4.21214	NA	promoter-TSS (NM_001306205)	promoter-TSS (NM_001306205)	-90	NM_023556	17855	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding
diff_RLAGL_Vector_cond1_5241	chr2	3335964	3336164	+	4.21065	NA	promoter-TSS (NM_030063)	promoter-TSS (NM_030063)	-104	NM_030063	78245	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_213	chr1	64105169	64105557	+	4.21034	NA	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	16026	NM_033563	93691	Mm.29466	NM_033563		Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding
diff_RLAGL_Vector_cond1_8679	chr6	134678192	134678592	+	4.20901	NA	intron (NM_026371, intron 2 of 3)	intron (NM_026371, intron 2 of 3)	37452	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding
diff_RLAGL_Vector_cond1_8155	chr6	6997164	6997374	+	4.20870	NA	intron (NM_001077713, intron 1 of 1)	5S|rRNA|rRNA	41251	NM_001077713	71238	Mm.389086	NM_001077713		Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding
diff_RLAGL_Vector_cond1_7343	chr4	134238156	134238533	+	4.20762	NA	promoter-TSS (NM_001081047)	promoter-TSS (NM_001081047)	55	NM_001081047	194231	Mm.331958	NM_001081047	ENSMUSG00000028841	Cnksr1	BC037758	connector enhancer of kinase suppressor of Ras 1	protein-coding
diff_RLAGL_Vector_cond1_2752	chr13	64162156	64162377	+	4.20730	NA	exon (NM_019986, exon 1 of 8)	exon (NM_019986, exon 1 of 8)	400	NM_019986	56541	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding
diff_RLAGL_Vector_cond1_5121	chr19	24633021	24633243	+	4.20604	NA	Intergenic	MT2A|LTR|ERVL	-40876	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding
diff_RLAGL_Vector_cond1_10090	chr9	55430187	55430404	+	4.20563	NA	exon (NM_172923, exon 9 of 11)	exon (NM_172923, exon 9 of 11)	81948	NM_145615	110842	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding
diff_RLAGL_Vector_cond1_9438	chr8	26840659	26841028	+	4.20469	NA	Intergenic	Intergenic	-16420	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA
diff_RLAGL_Vector_cond1_358	chr1	91494422	91494735	+	4.20432	NA	promoter-TSS (NM_028718)	promoter-TSS (NM_028718)	-90	NM_028718	74019	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding
diff_RLAGL_Vector_cond1_9061	chr7	73399379	73399667	+	4.20387	NA	intron (NM_177740, intron 2 of 3)	intron (NM_177740, intron 2 of 3)	-23749	NR_040325	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA
diff_RLAGL_Vector_cond1_3007	chr14	13970632	13970921	+	4.20349	NA	Intergenic	Intergenic	-9463	NM_001285780	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1140	chr10	78009493	78009780	+	4.20340	NA	exon (NM_008826, exon 1 of 22)	exon (NM_008826, exon 1 of 22)	160	NM_008826	18641	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-L	phosphofructokinase, liver, B-type	protein-coding
diff_RLAGL_Vector_cond1_8566	chr6	115007859	115008064	+	4.20334	NA	intron (NM_026894, intron 7 of 7)	intron (NM_026894, intron 7 of 7)	29913	NM_026894	68971	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_4422	chr17	42927457	42927729	+	4.20310	NA	Intergenic	Lx2B|LINE|L1	-51169	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding
diff_RLAGL_Vector_cond1_6951	chr4	45530834	45531046	+	4.20269	NA	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-112	NM_001033306	230126	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding
diff_RLAGL_Vector_cond1_7588	chr5	24447668	24447881	+	4.20269	NA	promoter-TSS (NM_022418)	promoter-TSS (NM_022418)	72	NM_022418	64295	Mm.150098	NM_022418	ENSMUSG00000028958	Tmub1	2010004O20Rik|AB030183|Hops	transmembrane and ubiquitin-like domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_1212	chr10	86021689	86021890	+	4.20263	NA	promoter-TSS (NM_153195)	promoter-TSS (NM_153195)	-140	NM_153195	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding
diff_RLAGL_Vector_cond1_8213	chr6	22339679	22340384	+	4.20251	NA	intron (NM_138587, intron 2 of 9)	intron (NM_138587, intron 2 of 9)	16050	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding
diff_RLAGL_Vector_cond1_9469	chr8	36101277	36101528	+	4.20248	NA	intron (NM_172911, intron 2 of 5)	intron (NM_172911, intron 2 of 5)	6574	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	D8Ertd82e	9830148H23|NACK|Sgk223|mFLJ00269	DNA segment, Chr 8, ERATO Doi 82, expressed	protein-coding
diff_RLAGL_Vector_cond1_7493	chr4	155280471	155280708	+	4.20213	NA	intron (NM_008860, intron 10 of 17)	intron (NM_008860, intron 10 of 17)	30623	NM_001190445	67513	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding
diff_RLAGL_Vector_cond1_9651	chr8	79548227	79548508	+	4.20079	NA	Intergenic	Intergenic	-91309	NM_001256033	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_4141	chr16	81260464	81260776	+	4.20044	NA	intron (NM_010954, intron 1 of 15)	intron (NM_010954, intron 1 of 15)	59923	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
diff_RLAGL_Vector_cond1_2940	chr13	113794242	113794670	+	4.20044	NA	promoter-TSS (NM_172595)	promoter-TSS (NM_172595)	-52	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding
diff_RLAGL_Vector_cond1_3216	chr14	74948896	74949122	+	4.20023	NA	Intergenic	Intergenic	-1132	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9092	chr7	80866672	80866911	+	4.20000	NA	intron (NM_009553, intron 2 of 2)	intron (NM_009553, intron 2 of 2)	4683	NM_009553	22691	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_3757	chr15	89196387	89196627	+	4.19985	NA	promoter-TSS (NM_027081)	promoter-TSS (NM_027081)	-33	NM_027081	69440	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding
diff_RLAGL_Vector_cond1_8054	chr5	138171899	138172164	+	4.19975	NA	promoter-TSS (NM_008568)	promoter-TSS (NM_008568)	10	NM_021392	11781	Mm.113205	NM_021392		Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding
diff_RLAGL_Vector_cond1_8035	chr5	135688788	135689061	+	4.19970	NA	promoter-TSS (NM_008898)	promoter-TSS (NM_008898)	-221	NM_008898	18984	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding
diff_RLAGL_Vector_cond1_2060	chr12	8921498	8921984	+	4.19872	NA	5' UTR (NM_008640, exon 1 of 7)	5' UTR (NM_008640, exon 1 of 7)	434	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding
diff_RLAGL_Vector_cond1_906	chr10	18022366	18022610	+	4.19838	NA	intron (NM_028440, intron 1 of 2)	intron (NM_028440, intron 1 of 2)	764	NM_028440	73112	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding
diff_RLAGL_Vector_cond1_6990	chr4	55349538	55350005	+	4.19804	NA	promoter-TSS (NM_009011)	promoter-TSS (NM_009011)	-271	NM_009011	19359	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23b homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_2944	chr13	114927993	114928196	+	4.19803	NA	intron (NM_008396, intron 1 of 29)	intron (NM_008396, intron 1 of 29)	3947	NM_008396	16398	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5	integrin alpha 2	protein-coding
diff_RLAGL_Vector_cond1_10571	chrX	145414391	145414627	+	4.19768	NA	Intergenic	Intergenic	-65615	NM_178358	237091	Mm.135547	NM_178358	ENSMUSG00000041700	Lhfpl1	Lhfp	lipoma HMGIC fusion partner-like 1	protein-coding
diff_RLAGL_Vector_cond1_5044	chr19	3307891	3308134	+	4.19762	NA	Intergenic	Intergenic	-15289	NM_013495	12894	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding
diff_RLAGL_Vector_cond1_3843	chr16	3743543	3743755	+	4.19730	NA	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-450	NM_148924	74120	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding
diff_RLAGL_Vector_cond1_9547	chr8	55866621	55866886	+	4.19720	NA	Intergenic	RLTR22_Mur|LTR|ERVK	40211	NM_175939	244486	Mm.67684	NM_175939	ENSMUSG00000046258	Adam29	-	a disintegrin and metallopeptidase domain 29	protein-coding
diff_RLAGL_Vector_cond1_6166	chr3	10440021	10440458	+	4.19668	NA	promoter-TSS (NM_029068)	promoter-TSS (NM_029068)	-109	NM_029068	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding
diff_RLAGL_Vector_cond1_6698	chr3	146875944	146876224	+	4.19660	NA	intron (NM_001302957, intron 1 of 21)	intron (NM_001302957, intron 1 of 21)	23717	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding
diff_RLAGL_Vector_cond1_2899	chr13	102065025	102065274	+	4.19632	NA	Intergenic	Intergenic	-296932	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding
diff_RLAGL_Vector_cond1_5938	chr2	151976122	151976342	+	4.19596	NA	intron (NM_146127, intron 1 of 1)	intron (NM_146127, intron 1 of 1)	-2251	NM_028666	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding
diff_RLAGL_Vector_cond1_7461	chr4	150853683	150854132	+	4.19568	NA	intron (NR_040649, intron 1 of 3)	intron (NR_040649, intron 1 of 3)	1042	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA
diff_RLAGL_Vector_cond1_5129	chr19	27438148	27438352	+	4.19549	NA	Intergenic	Intergenic	8213	NR_027987	107372	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA
diff_RLAGL_Vector_cond1_2618	chr13	30109263	30109547	+	4.19540	NA	Intergenic	Intergenic	-27085	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3239	chr14	79769754	79769999	+	4.19532	NA	exon (NM_021543, exon 1 of 3)	exon (NM_021543, exon 1 of 3)	1436	NM_001042726	18530	Mm.390715	NM_021543	ENSMUSG00000036422	Pcdh8	1700080P15Rik|Papc	protocadherin 8	protein-coding
diff_RLAGL_Vector_cond1_8601	chr6	121245719	121245980	+	4.19465	NA	promoter-TSS (NM_011909)	promoter-TSS (NM_011909)	-57	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding
diff_RLAGL_Vector_cond1_8556	chr6	113237878	113238153	+	4.19375	NA	exon (NM_026849, exon 1 of 19)	exon (NM_026849, exon 1 of 19)	172	NM_026849	97287	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding
diff_RLAGL_Vector_cond1_5327	chr2	20649817	20650064	+	4.19370	NA	intron (NM_178059, intron 3 of 18)	intron (NM_178059, intron 3 of 18)	130427	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
diff_RLAGL_Vector_cond1_1330	chr10	111009605	111010069	+	4.19343	NA	intron (NM_172554, intron 1 of 16)	CpG	229	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding
diff_RLAGL_Vector_cond1_765	chr1	185454566	185454949	+	4.19340	NA	promoter-TSS (NM_001033286)	promoter-TSS (NM_001033286)	-91	NM_001033286	226781	Mm.227117	NM_001033286	ENSMUSG00000026614	Slc30a10	E130106K10Rik|Gm212	solute carrier family 30, member 10	protein-coding
diff_RLAGL_Vector_cond1_10006	chr9	35263444	35263734	+	4.19294	NA	intron (NM_001286604, intron 2 of 9)	intron (NM_001286604, intron 2 of 9)	4216	NM_001286604	109229	Mm.24197	NM_175411	ENSMUSG00000050471	Fam118b	2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l	family with sequence similarity 118, member B	protein-coding
diff_RLAGL_Vector_cond1_3795	chr15	96342901	96343129	+	4.19241	NA	intron (NM_175251, intron 3 of 20)	ORR1A2|LTR|ERVL-MaLR	55493	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding
diff_RLAGL_Vector_cond1_7246	chr4	118134942	118135197	+	4.19177	NA	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-123	NM_001285521	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding
diff_RLAGL_Vector_cond1_2571	chr13	17805187	17805394	+	4.19172	NA	promoter-TSS (NM_001081058)	promoter-TSS (NM_001081058)	-193	NM_027118	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding
diff_RLAGL_Vector_cond1_9606	chr8	70539078	70539305	+	4.19160	NA	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-484	NM_007924	13716	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding
diff_RLAGL_Vector_cond1_7249	chr4	118359747	118360417	+	4.19010	NA	promoter-TSS (NM_026601)	promoter-TSS (NM_026601)	83	NR_003946	68180	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase homolog (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_3483	chr15	18821451	18821671	+	4.18998	NA	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	1232	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
diff_RLAGL_Vector_cond1_1636	chr11	49846667	49846993	+	4.18986	NA	promoter-TSS (NM_207692)	promoter-TSS (NM_207692)	79	NM_016961	26420	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding
diff_RLAGL_Vector_cond1_8026	chr5	135001172	135001789	+	4.18974	NA	promoter-TSS (NR_026907)	promoter-TSS (NR_026907)	-130	NR_026907	71304	Mm.482317	NR_026907	ENSMUSG00000054909	Wbscr25	4933433J03Rik|4933439O14Rik	Williams Beuren syndrome chromosome region 25 (human)	ncRNA
diff_RLAGL_Vector_cond1_6810	chr4	8206970	8207266	+	4.18968	NA	intron (NM_007592, intron 3 of 8)	intron (NM_007592, intron 3 of 8)	31923	NM_007592	12319	Mm.119320	NM_007592		Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding
diff_RLAGL_Vector_cond1_10171	chr9	78532359	78532689	+	4.18954	NA	Intergenic	Intergenic	-50800	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding
diff_RLAGL_Vector_cond1_3815	chr15	100598906	100599142	+	4.18914	NA	intron (NM_001304965, intron 1 of 10)	intron (NM_001304965, intron 1 of 10)	960	NM_001304965	19009	Mm.28825	NM_010127		Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_8445	chr6	86848732	86848988	+	4.18912	NA	promoter-TSS (NM_001040106)	promoter-TSS (NM_001040106)	580	NR_028298	67170	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA
diff_RLAGL_Vector_cond1_6076	chr2	173152704	173153067	+	4.18879	NA	promoter-TSS (NM_011044)	promoter-TSS (NM_011044)	-188	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding
diff_RLAGL_Vector_cond1_2266	chr12	58624959	58625503	+	4.18807	NA	Intergenic	Intergenic	-355973	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
diff_RLAGL_Vector_cond1_1399	chr10	122678539	122678790	+	4.18792	NA	promoter-TSS (NM_001110218)	promoter-TSS (NM_001110218)	-98	NM_001110218	319468	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding
diff_RLAGL_Vector_cond1_1090	chr10	63122589	63122825	+	4.18754	NA	intron (NM_182992, intron 16 of 19)	intron (NM_182992, intron 16 of 19)	22551	NM_016864	53404	Mm.228661	NM_016864	ENSMUSG00000036816	Atoh7	Math5|bHLHa13	atonal homolog 7 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7779	chr5	72868454	72868746	+	4.18699	NA	promoter-TSS (NM_001113464)	promoter-TSS (NM_001113464)	-152	NM_001113460	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding
diff_RLAGL_Vector_cond1_6079	chr2	173266641	173266859	+	4.18580	NA	intron (NM_022995, intron 1 of 3)	intron (NM_022995, intron 1 of 3)	9783	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding
diff_RLAGL_Vector_cond1_9590	chr8	68083680	68083906	+	4.18538	NA	Intergenic	Intergenic	-109219	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_2700	chr13	58181625	58181878	+	4.18502	NA	intron (NM_026842, intron 7 of 10)	intron (NM_026842, intron 7 of 10)	24102	NM_198004	75731	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_4152	chr16	85168624	85168836	+	4.18314	NA	intron (NM_007471, intron 1 of 15)	intron (NM_007471, intron 1 of 15)	4977	NM_001198826	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding
diff_RLAGL_Vector_cond1_714	chr1	177702508	177702794	+	4.18274	NA	Intergenic	Intergenic	-27163	NM_027077	69428	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding
diff_RLAGL_Vector_cond1_4575	chr17	71474983	71475223	+	4.18200	NA	exon (NM_028887, exon 1 of 48)	exon (NM_028887, exon 1 of 48)	240	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3075	chr14	32560887	32561106	+	4.18169	NA	intron (NM_001081221, intron 11 of 20)	intron (NM_001081221, intron 11 of 20)	-38931	NM_001001796	107751	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding
diff_RLAGL_Vector_cond1_4825	chr18	37644220	37644430	+	4.18152	NA	promoter-TSS (NM_175770)	promoter-TSS (NM_175770)	-121	NM_175770	24074	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	protein-coding
diff_RLAGL_Vector_cond1_1200	chr10	84368299	84368594	+	4.18116	NA	Intergenic	B4|SINE|B4	72025	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding
diff_RLAGL_Vector_cond1_505	chr1	135234733	135235125	+	4.18110	NA	Intergenic	Intergenic	23543	NM_007921	13710	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding
diff_RLAGL_Vector_cond1_9309	chr7	140935034	140935253	+	4.18092	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-6438	NM_145387	212974	Mm.260139	NM_145387	ENSMUSG00000062031	Athl1	5730511L01Rik|BC023151	ATH1, acid trehalase-like 1 (yeast)	protein-coding
diff_RLAGL_Vector_cond1_3478	chr15	16990887	16991090	+	4.18060	NA	Intergenic	Intergenic	212887	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
diff_RLAGL_Vector_cond1_4272	chr17	14371772	14372032	+	4.18041	NA	intron (NM_022315, intron 8 of 12)	intron (NM_022315, intron 8 of 12)	27040	NR_027986	74917	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA
diff_RLAGL_Vector_cond1_8692	chr6	135575373	135575594	+	4.18010	NA	Intergenic	Intergenic	-83430	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA
diff_RLAGL_Vector_cond1_2248	chr12	54697049	54697419	+	4.17966	NA	Intergenic	Intergenic	-1369	NM_025456	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding
diff_RLAGL_Vector_cond1_3785	chr15	94661006	94661217	+	4.17940	NA	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	31926	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding
diff_RLAGL_Vector_cond1_988	chr10	36506852	36507126	+	4.17880	NA	5' UTR (NM_001081208, exon 1 of 4)	5' UTR (NM_001081208, exon 1 of 4)	182	NM_001253355	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding
diff_RLAGL_Vector_cond1_8872	chr7	25754834	25755154	+	4.17865	NA	promoter-TSS (NM_144922)	promoter-TSS (NM_144922)	-274	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding
diff_RLAGL_Vector_cond1_10054	chr9	44692005	44692216	+	4.17817	NA	intron (NM_153537, intron 20 of 21)	intron (NM_153537, intron 20 of 21)	18877	NM_021481	58866	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding
diff_RLAGL_Vector_cond1_1802	chr11	86757727	86757968	+	4.17749	NA	promoter-TSS (NM_001003908)	promoter-TSS (NM_001003908)	-355	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding
diff_RLAGL_Vector_cond1_7991	chr5	130029371	130029685	+	4.17733	NA	intron (NM_007761, intron 1 of 5)	intron (NM_007761, intron 1 of 5)	222	NM_007761	12909	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding
diff_RLAGL_Vector_cond1_5865	chr2	142568554	142568884	+	4.17702	NA	Intergenic	RLTR24|LTR|ERV1	332745	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding
diff_RLAGL_Vector_cond1_10364	chr9	121839355	121839588	+	4.17684	NA	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	-10	NM_028384	100502861	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding
diff_RLAGL_Vector_cond1_8707	chr6	137901202	137901488	+	4.17459	NA	Intergenic	Intergenic	146768	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_5826	chr2	136920629	136920878	+	4.17440	NA	intron (NM_028201, intron 2 of 5)	intron (NM_028201, intron 2 of 5)	21402	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_95	chr1	24100459	24100684	+	4.17379	NA	promoter-TSS (NM_026604)	promoter-TSS (NM_026604)	-230	NM_026604	68187	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding
diff_RLAGL_Vector_cond1_9715	chr8	93974689	93974950	+	4.17348	NA	exon (NM_011787, exon 12 of 14)	exon (NM_011787, exon 12 of 14)	37821	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding
diff_RLAGL_Vector_cond1_2685	chr13	54590115	54590531	+	4.17343	NA	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	92	NM_025933	67044	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding
diff_RLAGL_Vector_cond1_5510	chr2	62513717	62514055	+	4.17270	NA	intron (NM_007986, intron 20 of 25)	L3|LINE|CR1	-30233	NM_008100	14526	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding
diff_RLAGL_Vector_cond1_5380	chr2	30718838	30719125	+	4.17254	NA	Intergenic	Intergenic	-2229	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA
diff_RLAGL_Vector_cond1_10126	chr9	64576739	64577008	+	4.17206	NA	intron (NM_001134399, intron 5 of 24)	intron (NM_001134399, intron 5 of 24)	160883	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_5333	chr2	20990108	20990307	+	4.17095	NA	Intergenic	Intergenic	21333	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA
diff_RLAGL_Vector_cond1_5008	chr18	82511970	82512309	+	4.17025	NA	intron (NM_010777, intron 2 of 6)	intron (NM_010777, intron 2 of 6)	37016	NM_010777	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|mld|shi	myelin basic protein	protein-coding
diff_RLAGL_Vector_cond1_4325	chr17	24414397	24414671	+	4.16833	NA	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	-21	NR_033554	654822	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA
diff_RLAGL_Vector_cond1_9107	chr7	84026036	84026416	+	4.16739	NA	intron (NM_030728, intron 1 of 28)	intron (NM_030728, intron 1 of 28)	60279	NM_030728	80982	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding
diff_RLAGL_Vector_cond1_6786	chr4	3420091	3420364	+	4.16702	NA	Intergenic	Intergenic	-116863	NR_037306	100499523		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA
diff_RLAGL_Vector_cond1_2547	chr13	12340721	12340945	+	4.16684	NA	promoter-TSS (NM_033268)	promoter-TSS (NM_033268)	-101	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding
diff_RLAGL_Vector_cond1_4467	chr17	48738893	48739167	+	4.16682	NA	Intergenic	MLT1O|LTR|ERVL-MaLR	-193552	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_3158	chr14	60178647	60178914	+	4.16677	NA	Intergenic	MLTR18_MM|LTR|ERVK	50135	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA
diff_RLAGL_Vector_cond1_3853	chr16	8829211	8829475	+	4.16647	NA	promoter-TSS (NM_001081400)	promoter-TSS (NM_001081400)	-757	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding
diff_RLAGL_Vector_cond1_2193	chr12	39030604	39030853	+	4.16625	NA	Intergenic	Intergenic	247017	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
diff_RLAGL_Vector_cond1_3725	chr15	81802419	81802797	+	4.16584	NA	promoter-TSS (NM_153484)	promoter-TSS (NM_153484)	-65	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding
diff_RLAGL_Vector_cond1_10475	chrX	84961157	84961366	+	4.16509	NA	intron (NM_007868, intron 61 of 78)	intron (NM_007868, intron 61 of 78)	-87034	NM_001314036	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding
diff_RLAGL_Vector_cond1_4015	chr16	50559489	50559700	+	4.16478	NA	TTS (NR_040379)	TTS (NR_040379)	-30909	NR_040566	75211	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA
diff_RLAGL_Vector_cond1_4051	chr16	57471878	57472082	+	4.16433	NA	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-77262	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding
diff_RLAGL_Vector_cond1_7990	chr5	130023789	130024359	+	4.16385	NA	5' UTR (NM_133768, exon 2 of 17)	5' UTR (NM_133768, exon 2 of 17)	257	NM_133768	109900	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik	argininosuccinate lyase	protein-coding
diff_RLAGL_Vector_cond1_928	chr10	24636081	24636333	+	4.16381	NA	Intergenic	Intergenic	40765	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding
diff_RLAGL_Vector_cond1_3887	chr16	18836610	18836921	+	4.16325	NA	exon (NM_001033164, exon 2 of 3)	exon (NM_001033164, exon 2 of 3)	185	NM_001033164	72307	Mm.36907	NM_001033164	ENSMUSG00000071632	2510002D24Rik	2410043I01Rik|AA163535|AA409624|DXMgi27	RIKEN cDNA 2510002D24 gene	protein-coding
diff_RLAGL_Vector_cond1_3630	chr15	61790216	61790714	+	4.16223	NA	Intergenic	Intergenic	-16014	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA
diff_RLAGL_Vector_cond1_6396	chr3	75320936	75321287	+	4.16221	NA	Intergenic	Intergenic	-51033	NM_026460	67931	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding
diff_RLAGL_Vector_cond1_2954	chr13	116688738	116689057	+	4.16141	NA	Intergenic	Intergenic	336619	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding
diff_RLAGL_Vector_cond1_10545	chrX	133743525	133743861	+	4.16058	NA	Intergenic	Intergenic	-54700	NM_001105246	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding
diff_RLAGL_Vector_cond1_10363	chr9	121718968	121719257	+	4.15727	NA	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-69	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding
diff_RLAGL_Vector_cond1_9144	chr7	99381517	99381772	+	4.15660	NA	promoter-TSS (NM_201352)	promoter-TSS (NM_201352)	95	NM_201352	233552	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_9311	chr7	141042728	141042934	+	4.15623	NA	Intergenic	Intergenic	-18443	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding
diff_RLAGL_Vector_cond1_3716	chr15	78962996	78963298	+	4.15523	NA	intron (NM_001039155, intron 7 of 7)	intron (NM_001039155, intron 7 of 7)	15423	NM_001039155	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding
diff_RLAGL_Vector_cond1_8824	chr7	12965650	12966008	+	4.15421	NA	promoter-TSS (NM_178732)	promoter-TSS (NM_178732)	-35	NM_178732	243834	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding
diff_RLAGL_Vector_cond1_2153	chr12	31256576	31256795	+	4.15413	NA	Intergenic	Intergenic	-8609	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding
diff_RLAGL_Vector_cond1_1213	chr10	86302727	86302954	+	4.15390	NA	intron (NM_011595, intron 1 of 4)	intron (NM_011595, intron 1 of 4)	2428	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding
diff_RLAGL_Vector_cond1_1069	chr10	58812249	58812586	+	4.15379	NA	promoter-TSS (NM_172788)	promoter-TSS (NM_172788)	-942	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding
diff_RLAGL_Vector_cond1_908	chr10	18329791	18330006	+	4.15379	NA	Intergenic	MER5A|DNA|hAT-Charlie	-77777	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding
diff_RLAGL_Vector_cond1_5450	chr2	49349860	49350083	+	4.15325	NA	Intergenic	Intergenic	-101515	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5491	chr2	59175899	59176216	+	4.15290	NA	intron (NM_026361, intron 1 of 21)	intron (NM_026361, intron 1 of 21)	15207	NM_175464	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding
diff_RLAGL_Vector_cond1_4571	chr17	70728997	70729239	+	4.15283	NA	intron (NM_001128181, intron 5 of 9)	Tigger7|DNA|TcMar-Tigger	117659	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_8693	chr6	136407721	136408021	+	4.15222	NA	intron (NM_001201390, intron 1 of 1)	intron (NM_001201390, intron 1 of 1)	7698	NM_001201390	100502936	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding
diff_RLAGL_Vector_cond1_1672	chr11	58904164	58904417	+	4.15118	NA	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	-65	NM_011758	22698	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding
diff_RLAGL_Vector_cond1_9760	chr8	107696578	107696882	+	4.15093	NA	Intergenic	Intergenic	-108248	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding
diff_RLAGL_Vector_cond1_2815	chr13	74102051	74102424	+	4.15056	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-19278	NM_001081060	105243	Mm.261564	NM_001081060	ENSMUSG00000036123	Slc9a3	9030624O13Rik|AI930210|NHE-3|NHE3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	protein-coding
diff_RLAGL_Vector_cond1_5763	chr2	124905103	124905314	+	4.15040	NA	Intergenic	Intergenic	-162919	NM_175034	317750	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding
diff_RLAGL_Vector_cond1_1806	chr11	87086663	87086926	+	4.14960	NA	promoter-TSS (NM_024262)	promoter-TSS (NM_024262)	-17	NM_024262	74133	Mm.23257	NM_024262	ENSMUSG00000020495	Smg8	1200011M11Rik	smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_7737	chr5	53809929	53810131	+	4.14907	NA	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	403	NM_144517	67249	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding
diff_RLAGL_Vector_cond1_8370	chr6	64490757	64490960	+	4.14808	NA	intron (NM_008167, intron 13 of 15)	intron (NM_008167, intron 13 of 15)	-238288	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1849	chr11	96277764	96278057	+	4.14786	NA	Intergenic	Intergenic	-3995	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding
diff_RLAGL_Vector_cond1_10568	chrX	142966311	142966833	+	4.14763	NA	exon (NM_019496, exon 1 of 6)	exon (NM_019496, exon 1 of 6)	156	NM_019496	56068	Mm.143724	NM_019496		Ammecr1	6230420G18Rik	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding
diff_RLAGL_Vector_cond1_5561	chr2	76512263	76512462	+	4.14748	NA	intron (NM_145525, intron 2 of 26)	MT2B1|LTR|ERVL	13356	NM_001290735	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding
diff_RLAGL_Vector_cond1_2886	chr13	98263023	98263253	+	4.14716	NA	promoter-TSS (NM_023472)	promoter-TSS (NM_023472)	62	NM_001271391	68558	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding
diff_RLAGL_Vector_cond1_10150	chr9	70926883	70927101	+	4.14688	NA	intron (NM_008280, intron 1 of 8)	intron (NM_008280, intron 1 of 8)	7816	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding
diff_RLAGL_Vector_cond1_4736	chr18	8880644	8880860	+	4.14643	NA	Intergenic	Intergenic	-332104	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled homolog 8 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7235	chr4	116708245	116708545	+	4.14632	NA	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	-10	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik	methylmalonic aciduria cblC type, with homocystinuria	protein-coding
diff_RLAGL_Vector_cond1_1536	chr11	20542942	20543233	+	4.14620	NA	promoter-TSS (NM_021372)	promoter-TSS (NM_021372)	-166	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_1092	chr10	66813969	66814272	+	4.14596	NA	Intergenic	Intergenic	-190955	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA
diff_RLAGL_Vector_cond1_826	chr1	194318318	194318640	+	4.14476	NA	Intergenic	Intergenic	-95720	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
diff_RLAGL_Vector_cond1_3944	chr16	35156410	35156643	+	4.14425	NA	exon (NM_001012765, exon 1 of 21)	exon (NM_001012765, exon 1 of 21)	890	NM_001012765	224129	Mm.41137	NM_001012765		Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding
diff_RLAGL_Vector_cond1_1814	chr11	87710144	87710359	+	4.14357	NA	intron (NM_172448, intron 2 of 9)	intron (NM_172448, intron 2 of 9)	10727	NR_045139	68690	Mm.342009	NR_045139		1110028F11Rik	-	RIKEN cDNA 1110028F11 gene	ncRNA
diff_RLAGL_Vector_cond1_5459	chr2	51141307	51141624	+	4.14156	NA	intron (NM_028810, intron 2 of 4)	intron (NM_028810, intron 2 of 4)	7646	NM_028810	74194	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding
diff_RLAGL_Vector_cond1_6379	chr3	69044738	69045039	+	4.14081	NA	promoter-TSS (NM_025863)	promoter-TSS (NM_025863)	-146	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding
diff_RLAGL_Vector_cond1_6227	chr3	28340389	28340622	+	4.14038	NA	intron (NM_001163007, intron 1 of 31)	intron (NM_001163007, intron 1 of 31)	77291	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding
diff_RLAGL_Vector_cond1_7291	chr4	126429518	126429804	+	4.13761	NA	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-119	NM_153402	214150	Mm.440915	NM_153402		Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding
diff_RLAGL_Vector_cond1_7403	chr4	141955626	141955871	+	4.13753	NA	intron (NM_177868, intron 10 of 31)	intron (NM_177868, intron 10 of 31)	-27244	NR_040672	545691	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037|OTTMUSG00000010113	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA
diff_RLAGL_Vector_cond1_10507	chrX	99976214	99976493	+	4.13667	NA	intron (NM_010099, intron 1 of 7)	intron (NM_010099, intron 1 of 7)	747	NM_001177941	13607	Mm.328086	NM_010099	ENSMUSG00000059327	Eda	EDA1|Ed1|Eda-A1|Eda-A2|HED|Ta|XLHED|tabby	ectodysplasin-A	protein-coding
diff_RLAGL_Vector_cond1_8975	chr7	49165018	49165223	+	4.13637	NA	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-81069	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
diff_RLAGL_Vector_cond1_1055	chr10	54118372	54118623	+	4.13516	NA	Intergenic	MIRb|SINE|MIR	42575	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA
diff_RLAGL_Vector_cond1_6232	chr3	30601191	30601450	+	4.13513	NA	promoter-TSS (NM_030557)	promoter-TSS (NM_030557)	-767	NM_030557	80732	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding
diff_RLAGL_Vector_cond1_2347	chr12	86433347	86433573	+	4.13470	NA	intron (NM_011934, intron 1 of 6)	intron (NM_011934, intron 1 of 6)	11816	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding
diff_RLAGL_Vector_cond1_6037	chr2	168741261	168741497	+	4.13452	NA	intron (NM_001289446, intron 1 of 27)	intron (NM_001289446, intron 1 of 27)	421	NM_015731	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding
diff_RLAGL_Vector_cond1_7609	chr5	31494478	31494739	+	4.13435	NA	promoter-TSS (NM_133756)	promoter-TSS (NM_133756)	-153	NM_133756	74254	Mm.348649	NM_133756		Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding
diff_RLAGL_Vector_cond1_8905	chr7	34116833	34117054	+	4.13411	NA	intron (NM_207212, intron 6 of 7)	intron (NM_207212, intron 6 of 7)	16325	NM_207212	101543	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding
diff_RLAGL_Vector_cond1_9216	chr7	122226439	122226691	+	4.13312	NA	Intergenic	Intergenic	7069	NM_027363	70261	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding
diff_RLAGL_Vector_cond1_3444	chr15	8569225	8569551	+	4.13274	NA	Intergenic	CpG	-124925	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4810	chr18	34535697	34536065	+	4.13243	NA	Intergenic	Intergenic	-6447	NM_009290	20890	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding
diff_RLAGL_Vector_cond1_464	chr1	127275835	127276151	+	4.13198	NA	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	71007	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding
diff_RLAGL_Vector_cond1_9440	chr8	26881486	26881795	+	4.13197	NA	Intergenic	Intergenic	-57217	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA
diff_RLAGL_Vector_cond1_8190	chr6	17481298	17481533	+	4.13107	NA	intron (NM_008591, intron 1 of 21)	intron (NM_008591, intron 1 of 21)	17458	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_6197	chr3	20520839	20521040	+	4.13087	NA	Intergenic	Intergenic	-153762	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
diff_RLAGL_Vector_cond1_836	chr10	3366498	3366711	+	4.12986	NA	5' UTR (NM_133485, exon 1 of 4)	5' UTR (NM_133485, exon 1 of 4)	454	NM_133485	76142	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding
diff_RLAGL_Vector_cond1_498	chr1	134093157	134093496	+	4.12967	NA	Intergenic	Intergenic	-14171	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding
diff_RLAGL_Vector_cond1_4360	chr17	29841674	29842014	+	4.12965	NA	intron (NM_001081160, intron 9 of 15)	intron (NM_001081160, intron 9 of 15)	46038	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding
diff_RLAGL_Vector_cond1_9457	chr8	34807089	34807422	+	4.12947	NA	promoter-TSS (NM_176933)	promoter-TSS (NM_176933)	-355	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding
diff_RLAGL_Vector_cond1_383	chr1	97902859	97903147	+	4.12942	NA	intron (NM_013626, intron 7 of 25)	intron (NM_013626, intron 7 of 25)	132831	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding
diff_RLAGL_Vector_cond1_1543	chr11	22286800	22287278	+	4.12939	NA	promoter-TSS (NM_001252515)	promoter-TSS (NM_001252515)	-244	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_10255	chr9	101102203	101102554	+	4.12855	NA	3' UTR (NM_001100451, exon 2 of 2)	3' UTR (NM_001100451, exon 2 of 2)	27616	NM_001100451	77853	Mm.326206	NM_001100451		Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7639	chr5	35893352	35893559	+	4.12812	NA	5' UTR (NM_027373, exon 1 of 17)	5' UTR (NM_027373, exon 1 of 17)	136	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_9372	chr8	10936828	10937177	+	4.12752	NA	Intergenic	Intergenic	-8545	NR_030715	665306	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA
diff_RLAGL_Vector_cond1_8774	chr6	147453172	147453382	+	4.12750	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-22594	NM_025911	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding
diff_RLAGL_Vector_cond1_272	chr1	74434708	74434937	+	4.12731	NA	TTS (NM_176972)	TTS (NM_176972)	25438	NM_009509	22349	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding
diff_RLAGL_Vector_cond1_3448	chr15	9088809	9089380	+	4.12651	NA	intron (NM_001286255, intron 4 of 11)	intron (NM_001286255, intron 4 of 11)	17834	NM_001286255	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_5002	chr18	80714861	80715101	+	4.12616	NA	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	-1910	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding
diff_RLAGL_Vector_cond1_8559	chr6	113483210	113483534	+	4.12581	NA	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-197	NM_133930	171508	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811	cysteine-rich with EGF-like domains 1	protein-coding
diff_RLAGL_Vector_cond1_1556	chr11	24569781	24570015	+	4.12495	NA	TTS (NR_045857)	TTS (NR_045857)	87989	NR_045857	71316	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA
diff_RLAGL_Vector_cond1_6206	chr3	21356352	21356570	+	4.12488	NA	Intergenic	Intergenic	-720191	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_3359	chr14	118098334	118098570	+	4.12455	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	34313	NM_029578	76355	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding
diff_RLAGL_Vector_cond1_5538	chr2	68544307	68544554	+	4.12329	NA	Intergenic	Intergenic	-37983	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding
diff_RLAGL_Vector_cond1_2861	chr13	89740347	89740585	+	4.12312	NA	intron (NM_001134474, intron 1 of 13)	C-rich|Low_complexity|Low_complexity	2046	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding
diff_RLAGL_Vector_cond1_4839	chr18	39397298	39397545	+	4.12264	NA	Intergenic	Intergenic	89824	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding
diff_RLAGL_Vector_cond1_3392	chr14	122534486	122534685	+	4.12122	NA	intron (NM_144844, intron 1 of 23)	CpG	257	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding
diff_RLAGL_Vector_cond1_712	chr1	177458870	177459077	+	4.12107	NA	Intergenic	Intergenic	13152	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding
diff_RLAGL_Vector_cond1_3616	chr15	59082258	59082511	+	4.12103	NA	promoter-TSS (NM_144800)	promoter-TSS (NM_144800)	-358	NM_144800	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding
diff_RLAGL_Vector_cond1_5097	chr19	16872691	16872918	+	4.11960	NA	exon (NM_008023, exon 1 of 1)	exon (NM_008023, exon 1 of 1)	1026	NM_008023	14240	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding
diff_RLAGL_Vector_cond1_10484	chrX	94122246	94122487	+	4.11928	NA	intron (NM_001044386, intron 1 of 8)	CpG	1041	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
diff_RLAGL_Vector_cond1_10337	chr9	118596720	118596962	+	4.11906	NA	Intergenic	Intergenic	-9868	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding
diff_RLAGL_Vector_cond1_3598	chr15	54524485	54524734	+	4.11899	NA	Intergenic	Intergenic	-46757	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding
diff_RLAGL_Vector_cond1_1842	chr11	95309480	95309915	+	4.11882	NA	intron (NM_001195003, intron 1 of 14)	CpG	549	NM_177619	217127	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding
diff_RLAGL_Vector_cond1_3481	chr15	17099038	17099268	+	4.11831	NA	Intergenic	Intergenic	321052	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
diff_RLAGL_Vector_cond1_7046	chr4	72198860	72199265	+	4.11797	NA	intron (NM_001285530, intron 2 of 17)	intron (NM_001285530, intron 2 of 17)	1831	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
diff_RLAGL_Vector_cond1_8083	chr5	143464447	143464712	+	4.11778	NA	promoter-TSS (NM_144915)	promoter-TSS (NM_144915)	86	NM_144915	231871	Mm.469963	NM_144915		Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding
diff_RLAGL_Vector_cond1_7172	chr4	103214639	103214926	+	4.11696	NA	exon (NM_177732, exon 1 of 10)	exon (NM_177732, exon 1 of 10)	102	NM_177732	242585	Mm.281800	NM_177732		Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding
diff_RLAGL_Vector_cond1_6442	chr3	88593931	88594169	+	4.11689	NA	Intergenic	Intergenic	14379	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding
diff_RLAGL_Vector_cond1_3656	chr15	65786980	65787300	+	4.11675	NA	promoter-TSS (NM_133766)	promoter-TSS (NM_133766)	99	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_3179	chr14	63983161	63983374	+	4.11660	NA	intron (NM_026359, intron 2 of 3)	intron (NM_026359, intron 2 of 3)	4513	NM_026359	67750	Mm.33864	NM_026359	ENSMUSG00000021961	4930578I06Rik	AI429111	RIKEN cDNA 4930578I06 gene	protein-coding
diff_RLAGL_Vector_cond1_7177	chr4	105157470	105157777	+	4.11620	NA	5' UTR (NM_080555, exon 1 of 6)	5' UTR (NM_080555, exon 1 of 6)	276	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding
diff_RLAGL_Vector_cond1_9032	chr7	67549310	67549544	+	4.11606	NA	intron (NM_175124, intron 6 of 9)	intron (NM_175124, intron 6 of 9)	95809	NR_028144	67867	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding
diff_RLAGL_Vector_cond1_7296	chr4	127168567	127168811	+	4.11583	NA	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-515	NM_198618	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding
diff_RLAGL_Vector_cond1_8046	chr5	137333408	137333654	+	4.11576	NA	promoter-TSS (NM_031406)	promoter-TSS (NM_031406)	51	NM_031406	83704	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding
diff_RLAGL_Vector_cond1_3807	chr15	99664500	99664786	+	4.11421	NA	Intergenic	Intergenic	-6075	NM_009597	11419	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding
diff_RLAGL_Vector_cond1_5176	chr19	46039415	46039661	+	4.11330	NA	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	83	NM_010697	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding
diff_RLAGL_Vector_cond1_8575	chr6	115792907	115793243	+	4.11171	NA	exon (NM_025958, exon 10 of 15)	exon (NM_025958, exon 10 of 15)	15028	NR_028546	100217451	Mm.484708	NR_028546	ENSMUSG00000064563	Snora7a	MBI-141	small nucleolar RNA, H/ACA box 7A	snoRNA
diff_RLAGL_Vector_cond1_7363	chr4	137277216	137277516	+	4.11144	NA	promoter-TSS (NM_009523)	promoter-TSS (NM_009523)	-269	NM_009523	22417	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding
diff_RLAGL_Vector_cond1_3726	chr15	81856055	81856280	+	4.11140	NA	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	2159	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding
diff_RLAGL_Vector_cond1_2417	chr12	105510171	105510383	+	4.11137	NA	Intergenic	RLTR11A2|LTR|ERVK	-3156	NR_102381	104932	Mm.274150	NR_102381		AU015791	-	expressed sequence AU015791	ncRNA
diff_RLAGL_Vector_cond1_7324	chr4	133212584	133212878	+	4.11059	NA	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-195	NM_008154	14748	Mm.4721	NM_008154		Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding
diff_RLAGL_Vector_cond1_6574	chr3	124321009	124321220	+	4.11000	NA	promoter-TSS (NM_146140)	promoter-TSS (NM_146140)	77	NM_146140	229801	Mm.165810	NM_146140		Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding
diff_RLAGL_Vector_cond1_54	chr1	13373346	13373549	+	4.10891	NA	intron (NM_008678, intron 1 of 22)	CpG	636	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
diff_RLAGL_Vector_cond1_1428	chr10	127621282	127621501	+	4.10797	NA	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-243	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding
diff_RLAGL_Vector_cond1_2908	chr13	106760531	106760794	+	4.10770	NA	Intergenic	Intergenic	176253	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding
diff_RLAGL_Vector_cond1_2157	chr12	31950323	31950710	+	4.10736	NA	promoter-TSS (NM_153198)	promoter-TSS (NM_153198)	19	NM_153198	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_6966	chr4	49153902	49154184	+	4.10711	NA	intron (NM_178756, intron 1 of 7)	intron (NM_178756, intron 1 of 7)	94581	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding
diff_RLAGL_Vector_cond1_1675	chr11	59177014	59177269	+	4.10707	NA	exon (NM_080454, exon 2 of 2)	exon (NM_080454, exon 2 of 2)	5685	NM_175452	118454	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding
diff_RLAGL_Vector_cond1_1971	chr11	116808184	116808461	+	4.10681	NA	intron (NM_026280, intron 3 of 3)	intron (NM_026280, intron 3 of 3)	19724	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding
diff_RLAGL_Vector_cond1_10290	chr9	108049519	108049819	+	4.10678	NA	TTS (NM_013785)	TTS (NM_013785)	379	NM_177910	331026	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding
diff_RLAGL_Vector_cond1_9429	chr8	25139609	25139808	+	4.10544	NA	Intergenic	Intergenic	19525	NR_106187	102467006		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA
diff_RLAGL_Vector_cond1_2012	chr11	120467521	120467834	+	4.10528	NA	promoter-TSS (NM_008244)	promoter-TSS (NM_008244)	42	NM_001159328	15239	Mm.7919	NM_008244	ENSMUSG00000025793	Hgs	Hgr|Hrs|ZFYVE8	HGF-regulated tyrosine kinase substrate	protein-coding
diff_RLAGL_Vector_cond1_8496	chr6	96171552	96171943	+	4.10492	NA	intron (NM_182808, intron 2 of 4)	RLTR9D|LTR|ERVK	-5542	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo
diff_RLAGL_Vector_cond1_1742	chr11	73199260	73199600	+	4.10475	NA	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	-52	NM_029031	74637	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding
diff_RLAGL_Vector_cond1_2824	chr13	76056316	76056525	+	4.10441	NA	exon (NM_175495, exon 1 of 1)	exon (NM_175495, exon 1 of 1)	576	NM_175495	238725	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding
diff_RLAGL_Vector_cond1_8045	chr5	137277466	137277707	+	4.10394	NA	Intergenic	Intergenic	-10668	NM_001290010	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding
diff_RLAGL_Vector_cond1_633	chr1	164275521	164275779	+	4.10330	NA	promoter-TSS (NM_029115)	promoter-TSS (NM_029115)	52	NM_029115	74895	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding
diff_RLAGL_Vector_cond1_420	chr1	113259851	113260101	+	4.10323	NA	Intergenic	RMER17D|LTR|ERVK	-1395058	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
diff_RLAGL_Vector_cond1_8098	chr5	147188604	147188866	+	4.10245	NA	promoter-TSS (NM_008178)	promoter-TSS (NM_008178)	39	NM_008178	14842	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_8978	chr7	49283635	49283917	+	4.10203	NA	intron (NM_175272, intron 1 of 37)	(TC)n|Simple_repeat|Simple_repeat	37587	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
diff_RLAGL_Vector_cond1_4193	chr16	91447460	91447786	+	4.10137	NA	Intergenic	L1M2a|LINE|L1	-17481	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA
diff_RLAGL_Vector_cond1_6507	chr3	104220479	104220876	+	4.10114	NA	promoter-TSS (NM_133853)	promoter-TSS (NM_133853)	-271	NM_133853	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_5815	chr2	135967275	135967533	+	4.10059	NA	intron (NM_013829, intron 20 of 36)	intron (NM_013829, intron 20 of 36)	-90523	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding
diff_RLAGL_Vector_cond1_4238	chr17	5492427	5492731	+	4.10054	NA	promoter-TSS (NM_146073)	promoter-TSS (NM_146073)	-21	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding
diff_RLAGL_Vector_cond1_4239	chr17	5849485	5849832	+	4.10037	NA	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	8278	NM_025664	66616	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding
diff_RLAGL_Vector_cond1_2162	chr12	32952468	32952707	+	4.09982	NA	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	1202	NR_044986	74076	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA
diff_RLAGL_Vector_cond1_3823	chr15	101182729	101182978	+	4.09977	NA	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	8728	NM_007395	11479	Mm.308467	NM_007395		Acvr1b	6820432J04|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding
diff_RLAGL_Vector_cond1_8797	chr7	4739626	4740102	+	4.09938	NA	promoter-TSS (NM_001115018)	promoter-TSS (NM_001115018)	-263	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Suv420h2	BC024816|KMT5C|Suv4-20h2	suppressor of variegation 4-20 homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1818	chr11	88864479	88864805	+	4.09927	NA	promoter-TSS (NM_001042541)	promoter-TSS (NM_001042541)	-56	NM_001042541	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding
diff_RLAGL_Vector_cond1_2156	chr12	31634520	31634729	+	4.09921	NA	promoter-TSS (NM_001164090)	promoter-TSS (NM_001164090)	-27	NM_007530	12033	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding
diff_RLAGL_Vector_cond1_5238	chr2	3134920	3135389	+	4.09920	NA	intron (NM_001081161, intron 1 of 7)	intron (NM_001081161, intron 1 of 7)	16766	NM_001081161	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding
diff_RLAGL_Vector_cond1_2657	chr13	44409339	44409555	+	4.09830	NA	Intergenic	Intergenic	-30280	NR_045489	69491	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA
diff_RLAGL_Vector_cond1_3157	chr14	60170953	60171176	+	4.09811	NA	Intergenic	Intergenic	57851	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA
diff_RLAGL_Vector_cond1_7549	chr5	17208768	17209135	+	4.09811	NA	Intergenic	L2|LINE|L2	-267171	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding
diff_RLAGL_Vector_cond1_8039	chr5	135962769	135963060	+	4.09755	NA	intron (NM_001160366, intron 9 of 10)	CpG	11562	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding
diff_RLAGL_Vector_cond1_625	chr1	162886206	162886623	+	4.09728	NA	exon (NM_018881, exon 5 of 9)	exon (NM_018881, exon 5 of 9)	12298	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding
diff_RLAGL_Vector_cond1_7663	chr5	40107579	40107827	+	4.09705	NA	Intergenic	Intergenic	-463072	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
diff_RLAGL_Vector_cond1_3076	chr14	33213820	33214031	+	4.09691	NA	Intergenic	Intergenic	-2898	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding
diff_RLAGL_Vector_cond1_3947	chr16	35787649	35787903	+	4.09411	NA	intron (NM_175111, intron 2 of 7)	intron (NM_175111, intron 2 of 7)	17390	NM_175111	66667	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_3658	chr15	66969798	66970078	+	4.09386	NA	promoter-TSS (NM_008681)	promoter-TSS (NM_008681)	-297	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding
diff_RLAGL_Vector_cond1_9881	chr9	4258032	4258323	+	4.09342	NA	Intergenic	RLTR22_Mus|LTR|ERVK	51317	NM_026276	67618	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding
diff_RLAGL_Vector_cond1_4171	chr16	88412354	88412557	+	4.09055	NA	Intergenic	Intergenic	94523	NM_181490	239931	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding
diff_RLAGL_Vector_cond1_5853	chr2	140671355	140671584	+	4.09043	NA	promoter-TSS (NM_178382)	promoter-TSS (NM_178382)	7	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_8758	chr6	144822608	144822864	+	4.09004	NA	Intergenic	Intergenic	149868	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA
diff_RLAGL_Vector_cond1_6123	chr2	180118950	180119296	+	4.08989	NA	promoter-TSS (NM_144500)	promoter-TSS (NM_144500)	-243	NM_144500	228983	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_9094	chr7	81687706	81688019	+	4.08978	NA	intron (NM_011983, intron 1 of 8)	intron (NM_011983, intron 1 of 8)	5103	NM_001164087	26557	Mm.228	NM_011983	ENSMUSG00000025813	Homer2	9330120H11Rik|AW539445|CPD|Vesl-2	homer homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_616	chr1	161301486	161301929	+	4.08951	NA	Intergenic	MLTR18D_MM|LTR|ERVK	-50497	NM_001303408	11758	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding
diff_RLAGL_Vector_cond1_385	chr1	98071978	98072274	+	4.08815	NA	intron (NM_013626, intron 1 of 25)	intron (NM_013626, intron 1 of 25)	23506	NM_013626	18484	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding
diff_RLAGL_Vector_cond1_6783	chr4	3052385	3052639	+	4.08766	NA	Intergenic	Intergenic	-119571	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding
diff_RLAGL_Vector_cond1_8278	chr6	40471289	40471489	+	4.08717	NA	promoter-TSS (NM_028358)	promoter-TSS (NM_028358)	-26	NM_212468	381760	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_3211	chr14	73571248	73571507	+	4.08680	NA	intron (NM_011506, intron 4 of 10)	MER77B|LTR|ERVL	18591	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding
diff_RLAGL_Vector_cond1_5369	chr2	28523830	28524034	+	4.08586	NA	intron (NM_001145834, intron 1 of 17)	intron (NM_001145834, intron 1 of 17)	-9532	NM_001145835	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding
diff_RLAGL_Vector_cond1_1371	chr10	118817193	118817405	+	4.08522	NA	Intergenic	BGLII_Mur|LTR|ERVK	51604	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
diff_RLAGL_Vector_cond1_1163	chr10	80261013	80261436	+	4.08486	NA	promoter-TSS (NM_010255)	promoter-TSS (NM_010255)	-256	NM_010255	14431	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding
diff_RLAGL_Vector_cond1_9805	chr8	117646226	117646624	+	4.08428	NA	Intergenic	MLTR73|LTR|ERV1	25090	NM_028725	74032	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding
diff_RLAGL_Vector_cond1_9336	chr8	3718606	3718841	+	4.08388	NA	intron (NM_029465, intron 3 of 8)	intron (NM_029465, intron 3 of 8)	1928	NM_029465	75863	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding
diff_RLAGL_Vector_cond1_8614	chr6	124662762	124663041	+	4.08386	NA	promoter-TSS (NM_145130)	promoter-TSS (NM_145130)	-203	NM_145130	14792	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding
diff_RLAGL_Vector_cond1_9572	chr8	61714660	61714955	+	4.08298	NA	intron (NM_001081390, intron 3 of 19)	intron (NM_001081390, intron 3 of 19)	45291	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding
diff_RLAGL_Vector_cond1_2019	chr11	120824298	120824500	+	4.08288	NA	5' UTR (NM_007988, exon 1 of 43)	5' UTR (NM_007988, exon 1 of 43)	148	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding
diff_RLAGL_Vector_cond1_1106	chr10	69924436	69924685	+	4.08239	NA	promoter-TSS (NM_009670)	promoter-TSS (NM_009670)	-972	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
diff_RLAGL_Vector_cond1_7006	chr4	59933092	59933310	+	4.08185	NA	Intergenic	Intergenic	-18145	NM_021053	30936	Mm.284433	NM_021053		Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding
diff_RLAGL_Vector_cond1_4916	chr18	64660678	64661205	+	4.08182	NA	promoter-TSS (NM_001001488)	promoter-TSS (NM_001001488)	59	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding
diff_RLAGL_Vector_cond1_6991	chr4	55426246	55426599	+	4.08142	NA	Intergenic	Intergenic	-7580	NR_040674	100415914	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	OTTMUSG00000007226	predicted gene 12505	ncRNA
diff_RLAGL_Vector_cond1_10129	chr9	65032378	65032582	+	4.08040	NA	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	22	NM_028906	74388	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding
diff_RLAGL_Vector_cond1_743	chr1	181623546	181623853	+	4.08018	NA	Intergenic	RLTR20B5_MM|LTR|ERVK	-112248	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding
diff_RLAGL_Vector_cond1_2654	chr13	43828652	43829101	+	4.07971	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	43764	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding
diff_RLAGL_Vector_cond1_8761	chr6	145250177	145250556	+	4.07925	NA	promoter-TSS (NM_021284)	promoter-TSS (NM_021284)	-135	NM_021284	16653	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-ras|Ki-ras|Kras-2|Kras2|p21B|ras	v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	protein-coding
diff_RLAGL_Vector_cond1_2893	chr13	99049212	99049429	+	4.07855	NA	Intergenic	Intergenic	38601	NR_045495	69603	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA
diff_RLAGL_Vector_cond1_3381	chr14	121110999	121111237	+	4.07716	NA	intron (NM_134082, intron 2 of 26)	intron (NM_134082, intron 2 of 26)	75544	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding
diff_RLAGL_Vector_cond1_1437	chr10	128322301	128322541	+	4.07699	NA	promoter-TSS (NM_019953)	promoter-TSS (NM_019953)	-38	NM_019953	56530	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy 2 homolog (zebrafish)	protein-coding
diff_RLAGL_Vector_cond1_10537	chrX	129749689	129749985	+	4.07632	NA	promoter-TSS (NM_172493)	promoter-TSS (NM_172493)	95	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding
diff_RLAGL_Vector_cond1_8560	chr6	113668721	113669041	+	4.07596	NA	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-28618	NM_001033463	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_9838	chr8	122306796	122307021	+	4.07547	NA	intron (NM_009569, intron 2 of 9)	intron (NM_009569, intron 2 of 9)	24767	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding
diff_RLAGL_Vector_cond1_10624	chrY	90740297	90740574	+	4.07545	NA	Intergenic	Intergenic	-45007	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding
diff_RLAGL_Vector_cond1_7303	chr4	128993302	128993539	+	4.07492	NA	exon (NM_016895, exon 1 of 7)	exon (NM_016895, exon 1 of 7)	196	NM_001033966	11637	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding
diff_RLAGL_Vector_cond1_1902	chr11	103267581	103267884	+	4.07449	NA	promoter-TSS (NM_016896)	promoter-TSS (NM_016896)	-331	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding
diff_RLAGL_Vector_cond1_3793	chr15	96270668	96270883	+	4.07438	NA	non-coding (NR_030690, exon 1 of 1)	non-coding (NR_030690, exon 1 of 1)	4500	NR_030690	319722	Mm.103823	NR_030690		E330033B04Rik	-	RIKEN cDNA E330033B04 gene	ncRNA
diff_RLAGL_Vector_cond1_7656	chr5	38550545	38550771	+	4.07438	NA	intron (NM_011715, intron 3 of 14)	MIRb|SINE|MIR	10937	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding
diff_RLAGL_Vector_cond1_1171	chr10	80754929	80755202	+	4.07404	NA	promoter-TSS (NM_199322)	promoter-TSS (NM_199322)	-141	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_9266	chr7	132589705	132589941	+	4.07341	NA	Intergenic	Intergenic	9814	NM_009123	20231	Mm.334281	NM_009123		Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 transcription factor related, locus 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6807	chr4	7921620	7921936	+	4.07267	NA	Intergenic	RLTR47|LTR|ERVK	317263	NM_007592	12319	Mm.119320	NM_007592		Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding
diff_RLAGL_Vector_cond1_8274	chr6	38921201	38921528	+	4.07253	NA	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	2378	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding
diff_RLAGL_Vector_cond1_6950	chr4	45196146	45196417	+	4.07246	NA	intron (NM_001081172, intron 1 of 15)	intron (NM_001081172, intron 1 of 15)	11375	NM_001081172	666060	Mm.24783	NM_001081172	ENSMUSG00000035615	Frmpd1	BC031840|mKIAA0967	FERM and PDZ domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8292	chr6	43292547	43292810	+	4.07148	NA	Intergenic	Intergenic	16876	NM_130869	18291	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding
diff_RLAGL_Vector_cond1_2655	chr13	43864500	43864785	+	4.07103	NA	Intergenic	CpG	79530	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding
diff_RLAGL_Vector_cond1_9205	chr7	118243756	118244093	+	4.07086	NA	promoter-TSS (NR_027879)	promoter-TSS (NR_027879)	17	NR_027879	67745	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA
diff_RLAGL_Vector_cond1_8636	chr6	127586170	127586467	+	4.07086	NA	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	8343	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding
diff_RLAGL_Vector_cond1_3718	chr15	79282568	79282839	+	4.07022	NA	intron (NM_177580, intron 4 of 13)	intron (NM_177580, intron 4 of 13)	2806	NM_177580	207495	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding
diff_RLAGL_Vector_cond1_1008	chr10	39659881	39660106	+	4.07022	NA	intron (NR_038037, intron 2 of 2)	intron (NR_038037, intron 2 of 2)	47059	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_2477	chr12	116404932	116405458	+	4.06940	NA	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	-34	NR_028421	319545	Mm.390543	NR_028421		D430020J02Rik	-	RIKEN cDNA D430020J02 gene	ncRNA
diff_RLAGL_Vector_cond1_10526	chrX	112694388	112694699	+	4.06768	NA	intron (NM_181579, intron 2 of 16)	intron (NM_181579, intron 2 of 16)	4108	NM_181579	69693	Mm.34964	NM_181579	ENSMUSG00000034607	Pof1b	2310066B14Rik	premature ovarian failure 1B	protein-coding
diff_RLAGL_Vector_cond1_748	chr1	182564540	182564745	+	4.06763	NA	promoter-TSS (NM_001145806)	promoter-TSS (NM_001145806)	-365	NM_001145806	170725	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding
diff_RLAGL_Vector_cond1_8649	chr6	128843013	128843227	+	4.06750	NA	Intergenic	CpG	-16805	NM_030599	80782	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1d	killer cell lectin-like receptor subfamily B member 1B	protein-coding
diff_RLAGL_Vector_cond1_10523	chrX	111463094	111463336	+	4.06742	NA	intron (NM_025949, intron 2 of 24)	CpG-15872	74744	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding
diff_RLAGL_Vector_cond1_6418	chr3	82810407	82810615	+	4.06703	NA	Intergenic	B1F|SINE|Alu	65972	NM_001277170	633285	Mm.265114	NM_001146328		Rbm46	EG633285|ENSMUSG00000033882|Gm761	RNA binding motif protein 46	protein-coding
diff_RLAGL_Vector_cond1_6587	chr3	127005333	127005635	+	4.06697	NA	Intergenic	Intergenic	-7032	NM_178655	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	AI835472|AW491075|Ank-2	ankyrin 2, brain	protein-coding
diff_RLAGL_Vector_cond1_2420	chr12	105962705	105962974	+	4.06684	NA	Intergenic	CpG	-47424	NM_001029843	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding
diff_RLAGL_Vector_cond1_1455	chr11	3931901	3932210	+	4.06679	NA	promoter-TSS (NM_015749)	promoter-TSS (NM_015749)	-11	NM_015749	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding
diff_RLAGL_Vector_cond1_1388	chr10	121089314	121089541	+	4.06665	NA	intron (NM_011915, intron 6 of 9)	intron (NM_011915, intron 6 of 9)	55423	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding
diff_RLAGL_Vector_cond1_3515	chr15	32437716	32437925	+	4.06651	NA	intron (NM_009154, intron 3 of 22)	intron (NM_009154, intron 3 of 22)	193007	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding
diff_RLAGL_Vector_cond1_9276	chr7	133783157	133783376	+	4.06617	NA	promoter-TSS (NM_001286031)	promoter-TSS (NM_001286031)	-481	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding
diff_RLAGL_Vector_cond1_5725	chr2	115919179	115919415	+	4.06603	NA	intron (NM_001159567, intron 9 of 12)	intron (NM_001159567, intron 9 of 12)	145324	NM_001159570	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding
diff_RLAGL_Vector_cond1_3828	chr15	101538232	101538479	+	4.06584	NA	Intergenic	Intergenic	-5535	NM_008474	16680	Mm.25292	NM_008474	ENSMUSG00000044294	Krt84	AV235125|HRb-1|Krt2-16|Krt2-3	keratin 84	protein-coding
diff_RLAGL_Vector_cond1_6599	chr3	129213686	129214081	+	4.06502	NA	promoter-TSS (NM_001287048)	promoter-TSS (NM_001287048)	-49	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_5469	chr2	53007284	53007491	+	4.06493	NA	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	149519	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding
diff_RLAGL_Vector_cond1_4615	chr17	78200393	78200649	+	4.06339	NA	5' UTR (NM_015800, exon 1 of 17)	5' UTR (NM_015800, exon 1 of 17)	273	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding
diff_RLAGL_Vector_cond1_9996	chr9	32032321	32032715	+	4.06265	NA	Intergenic	CpG	-83618	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding
diff_RLAGL_Vector_cond1_8139	chr6	4889605	4889806	+	4.06194	NA	Intergenic	Intergenic	-13615	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding
diff_RLAGL_Vector_cond1_2663	chr13	47106087	47106591	+	4.06188	NA	promoter-TSS (NM_025900)	promoter-TSS (NM_025900)	-118	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding
diff_RLAGL_Vector_cond1_1631	chr11	45944941	45945219	+	4.06065	NA	promoter-TSS (NM_028185)	promoter-TSS (NM_028185)	-145	NM_028185	72290	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding
diff_RLAGL_Vector_cond1_10100	chr9	59291204	59291405	+	4.05986	NA	promoter-TSS (NM_028121)	promoter-TSS (NM_028121)	-268	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding
diff_RLAGL_Vector_cond1_9991	chr9	30883876	30884124	+	4.05947	NA	Intergenic	Intergenic	38452	NM_001024139	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding
diff_RLAGL_Vector_cond1_9820	chr8	120228697	120228948	+	4.05924	NA	promoter-TSS (NR_110496)	promoter-TSS (NR_110496)	-592	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA
diff_RLAGL_Vector_cond1_7647	chr5	37634238	37634520	+	4.05905	NA	intron (NM_022416, intron 2 of 11)	intron (NM_022416, intron 2 of 11)	82774	NM_022416	64293	Mm.103714	NM_022416	ENSMUSG00000029123	Stk32b	2510009F08Rik|STKG6|Stk32|YANK2	serine/threonine kinase 32B	protein-coding
diff_RLAGL_Vector_cond1_1535	chr11	20477416	20477886	+	4.05859	NA	Intergenic	Intergenic	-65602	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_3346	chr14	110713435	110713797	+	4.05847	NA	Intergenic	RMER13A|LTR|ERVK	41533	NM_175499	239250	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding
diff_RLAGL_Vector_cond1_3037	chr14	20734365	20734615	+	4.05767	NA	promoter-TSS (NM_010811)	promoter-TSS (NM_010811)	72	NM_010811	17423	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding
diff_RLAGL_Vector_cond1_6752	chr3	154880577	154880905	+	4.05763	NA	intron (NM_177066, intron 17 of 24)	intron (NM_177066, intron 17 of 24)	169608	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
diff_RLAGL_Vector_cond1_1351	chr10	115362226	115362508	+	4.05667	NA	promoter-TSS (NM_133683)	promoter-TSS (NM_133683)	-105	NM_133683	67226	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding
diff_RLAGL_Vector_cond1_5321	chr2	20167778	20167993	+	4.05619	NA	Intergenic	Intergenic	-122028	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
diff_RLAGL_Vector_cond1_4935	chr18	67933800	67934025	+	4.05608	NA	intron (NM_172631, intron 1 of 5)	CpG	655	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding
diff_RLAGL_Vector_cond1_1013	chr10	40328335	40328560	+	4.05542	NA	Intergenic	MER45R|DNA|hAT-Tip100	-20861	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding
diff_RLAGL_Vector_cond1_3910	chr16	25548020	25548368	+	4.05496	NA	Intergenic	Intergenic	-135571	NM_001127261	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding
diff_RLAGL_Vector_cond1_6466	chr3	95028611	95028856	+	4.05419	NA	Intergenic	Intergenic	-13495	NM_030074	78266	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding
diff_RLAGL_Vector_cond1_8837	chr7	16273532	16273827	+	4.05361	NA	promoter-TSS (NM_001136270)	promoter-TSS (NM_001136270)	13	NM_001136270	66300	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding
diff_RLAGL_Vector_cond1_4222	chr16	97382393	97382643	+	4.05340	NA	intron (NM_019517, intron 1 of 8)	B3|SINE|B2	25790	NM_019517	56175	Mm.97885	NM_019517	ENSMUSG00000040605	Bace2	1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding
diff_RLAGL_Vector_cond1_259	chr1	72255626	72255873	+	4.05333	NA	Intergenic	Intergenic	28565	NM_023523	111175	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding
diff_RLAGL_Vector_cond1_1404	chr10	125319018	125319274	+	4.05332	NA	intron (NM_011391, intron 1 of 6)	intron (NM_011391, intron 1 of 6)	9389	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding
diff_RLAGL_Vector_cond1_1109	chr10	70296760	70297014	+	4.05191	NA	Intergenic	Intergenic	51611	NM_025807	66859	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding
diff_RLAGL_Vector_cond1_1944	chr11	113487468	113487866	+	4.05167	NA	intron (NM_027216, intron 4 of 9)	intron (NM_027216, intron 4 of 9)	78148	NM_001166503	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding
diff_RLAGL_Vector_cond1_9731	chr8	95951879	95952086	+	4.05155	NA	Intergenic	CpG	-63617	NM_010325	14719	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_3945	chr16	35363110	35364083	+	4.05097	NA	intron (NM_133704, intron 1 of 6)	CpG	322	NM_133704	317717	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding
diff_RLAGL_Vector_cond1_10393	chrX	7841517	7841751	+	4.05004	NA	promoter-TSS (NM_138604)	promoter-TSS (NM_138604)	-197	NM_001290536	54644	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_6047	chr2	169790862	169791118	+	4.04942	NA	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	157344	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
diff_RLAGL_Vector_cond1_10243	chr9	97344804	97345220	+	4.04917	NA	Intergenic	Intergenic	24946	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding
diff_RLAGL_Vector_cond1_492	chr1	133610266	133610545	+	4.04807	NA	promoter-TSS (NM_009227)	promoter-TSS (NM_009227)	-125	NM_009227	20643	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding
diff_RLAGL_Vector_cond1_7828	chr5	88587550	88587870	+	4.04746	NA	intron (NM_027530, intron 1 of 12)	MLTR11B|LTR|ERVK	4197	NM_001289777	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_9091	chr7	80208699	80209063	+	4.04658	NA	intron (NM_013659, intron 2 of 14)	intron (NM_013659, intron 2 of 14)	22040	NM_013659	20352	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding
diff_RLAGL_Vector_cond1_9541	chr8	54077852	54078063	+	4.04563	NA	intron (NM_009506, intron 1 of 6)	CpG	425	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
diff_RLAGL_Vector_cond1_6491	chr3	100462070	100462553	+	4.04522	NA	Intergenic	Intergenic	26881	NM_001142952	74645	Mm.226900	NM_001142952		Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding
diff_RLAGL_Vector_cond1_9327	chr7	144022907	144023188	+	4.04419	NA	intron (NR_037302, intron 2 of 5)	intron (NR_037302, intron 2 of 5)	13793	NR_037292	100526562		NR_037292	ENSMUSG00000093221	Mir3105	mmu-mir-3105	microRNA 3105	ncRNA
diff_RLAGL_Vector_cond1_3890	chr16	20535189	20535516	+	4.04361	NA	promoter-TSS (NM_009679)	promoter-TSS (NM_009679)	-128	NM_009679	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding
diff_RLAGL_Vector_cond1_8475	chr6	91116627	91116910	+	4.04338	NA	promoter-TSS (NM_018815)	promoter-TSS (NM_018815)	58	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding
diff_RLAGL_Vector_cond1_6225	chr3	28060882	28061310	+	4.04323	NA	intron (NM_008875, intron 12 of 25)	L1_Rod|LINE|L1	76925	NM_008875	18805	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b	phospholipase D1	protein-coding
diff_RLAGL_Vector_cond1_2206	chr12	41552025	41552332	+	4.04314	NA	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-66121	NM_001271709	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
diff_RLAGL_Vector_cond1_8156	chr6	7308629	7308894	+	4.04303	NA	Intergenic	Intergenic	-246124	NM_001311060	21333	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding
diff_RLAGL_Vector_cond1_5206	chr19	53364838	53365118	+	4.04174	NA	intron (NM_001008542, intron 3 of 5)	intron (NM_001008542, intron 3 of 5)	25595	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2583	chr13	21759713	21759919	+	4.04119	NA	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	5693	NM_178201	319187		NM_178201	ENSMUSG00000095217	Hist1h2bn	-	histone cluster 1, H2bn	protein-coding
diff_RLAGL_Vector_cond1_7975	chr5	123973828	123974128	+	4.04115	NA	intron (NM_145070, intron 1 of 31)	CpG	350	NM_145070	29816	Mm.149954	NM_145070		Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding
diff_RLAGL_Vector_cond1_2382	chr12	99445148	99445464	+	4.04083	NA	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	4768	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding
diff_RLAGL_Vector_cond1_8355	chr6	59052943	59053470	+	4.04078	NA	Intergenic	Intergenic	-28704	NM_153574	58909	Mm.28813	NM_153574		Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding
diff_RLAGL_Vector_cond1_296	chr1	79671676	79672022	+	4.04026	NA	intron (NM_183027, intron 1 of 4)	CpG	123	NM_183027	252903	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding
diff_RLAGL_Vector_cond1_6408	chr3	79287147	79287412	+	4.03957	NA	Intergenic	CpG	-58097	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding
diff_RLAGL_Vector_cond1_637	chr1	165018710	165019011	+	4.03846	NA	Intergenic	RLTR20A2B_MM|LTR|ERVK	73070	NR_040480	75857	Mm.109021	NR_040480	ENSMUSG00000102408	4930568G15Rik	-	RIKEN cDNA 4930568G15 gene	ncRNA
diff_RLAGL_Vector_cond1_477	chr1	131153056	131153275	+	4.03794	NA	promoter-TSS (NM_001136070)	promoter-TSS (NM_001136070)	-42	NM_001136070	16865	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding
diff_RLAGL_Vector_cond1_7322	chr4	133056404	133056702	+	4.03740	NA	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	45047	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding
diff_RLAGL_Vector_cond1_3705	chr15	76617390	76617714	+	4.03654	NA	promoter-TSS (NM_028064)	promoter-TSS (NM_028064)	-700	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding
diff_RLAGL_Vector_cond1_2271	chr12	59219796	59219995	+	4.03639	NA	promoter-TSS (NM_001033156)	promoter-TSS (NM_001033156)	-412	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
diff_RLAGL_Vector_cond1_9921	chr9	14233848	14234048	+	4.03571	NA	Intergenic	Intergenic	-42353	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding
diff_RLAGL_Vector_cond1_1466	chr11	6415904	6416108	+	4.03434	NA	intron (NM_008907, intron 1 of 4)	CpG	136	NM_008907	268373	Mm.5246	NM_008907		Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding
diff_RLAGL_Vector_cond1_10011	chr9	35570275	35570557	+	4.03410	NA	promoter-TSS (NM_029762)	promoter-TSS (NM_029762)	-347	NM_029762	76832	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	hydrolethalus syndrome 1	protein-coding
diff_RLAGL_Vector_cond1_8865	chr7	24546872	24547093	+	4.03398	NA	promoter-TSS (NM_009532)	promoter-TSS (NM_009532)	-168	NM_009532	22594	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding
diff_RLAGL_Vector_cond1_5099	chr19	17011233	17011514	+	4.03352	NA	intron (NM_181348, intron 4 of 19)	intron (NM_181348, intron 4 of 19)	55255	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1832	chr11	94145202	94145421	+	4.03349	NA	Intergenic	Intergenic	-66143	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding
diff_RLAGL_Vector_cond1_4974	chr18	76662726	76662941	+	4.03338	NA	Intergenic	MTD|LTR|ERVL-MaLR	-193572	NM_001109743	664805	Mm.329543	NM_001109743	ENSMUSG00000091519	Skor2	Corl2|EG664805|Fussel18|Gm7348	SKI family transcriptional corepressor 2	protein-coding
diff_RLAGL_Vector_cond1_1383	chr10	120558220	120558520	+	4.03248	NA	Intergenic	Intergenic	-81435	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding
diff_RLAGL_Vector_cond1_1697	chr11	62497376	62497577	+	4.03144	NA	intron (NM_001039536, intron 2 of 6)	Lx8|LINE|L1	39016	NM_001039536	327942	Mm.390358	NM_199026		Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding
diff_RLAGL_Vector_cond1_4662	chr17	87314551	87314873	+	4.03133	NA	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	31826	NM_028639	225049	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding
diff_RLAGL_Vector_cond1_2429	chr12	108179355	108179580	+	4.03097	NA	promoter-TSS (NM_009832)	promoter-TSS (NM_009832)	-183	NM_028262	52690	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_7848	chr5	98376659	98376922	+	4.02992	NA	intron (NM_001024614, intron 2 of 5)	intron (NM_001024614, intron 2 of 5)	47486	NM_001024614	75784	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding
diff_RLAGL_Vector_cond1_2789	chr13	69280450	69280757	+	4.02991	NA	Intergenic	Intergenic	253261	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_9648	chr8	78945668	78945918	+	4.02985	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	-82644	NM_178267	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding
diff_RLAGL_Vector_cond1_3928	chr16	31201054	31201520	+	4.02944	NA	promoter-TSS (NM_030138)	promoter-TSS (NM_030138)	-49	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding
diff_RLAGL_Vector_cond1_7823	chr5	87536079	87536413	+	4.02898	NA	intron (NM_019878, intron 1 of 7)	intron (NM_019878, intron 1 of 7)	1949	NM_019878	56362	Mm.23502	NM_019878	ENSMUSG00000029269	Sult1b1	ST1B1|St2b2	sulfotransferase family 1B, member 1	protein-coding
diff_RLAGL_Vector_cond1_10399	chrX	10717310	10717554	+	4.02886	NA	promoter-TSS (NM_001166635)	promoter-TSS (NM_001166635)	67	NM_001166635	68041	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding
diff_RLAGL_Vector_cond1_3159	chr14	60265074	60265278	+	4.02862	NA	promoter-TSS (NM_144843)	promoter-TSS (NM_144843)	-29	NM_144843	219135	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding
diff_RLAGL_Vector_cond1_43	chr1	10040130	10040352	+	4.02801	NA	intron (NM_026493, intron 1 of 29)	CpG	2023	NM_026493	211660	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_10342	chr9	119241278	119241492	+	4.02797	NA	intron (NM_133985, intron 17 of 17)	intron (NM_133985, intron 17 of 17)	-9693	NR_033303	109280	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo
diff_RLAGL_Vector_cond1_4385	chr17	34031431	34031680	+	4.02720	NA	promoter-TSS (NM_011306)	promoter-TSS (NM_011306)	135	NM_008202	14977	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding
diff_RLAGL_Vector_cond1_9291	chr7	137698577	137698827	+	4.02484	NA	Intergenic	RLTR1E_MM|LTR|ERV1	261028	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo
diff_RLAGL_Vector_cond1_2674	chr13	52060330	52060602	+	4.02452	NA	Intergenic	Intergenic	-36275	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA
diff_RLAGL_Vector_cond1_5244	chr2	3762928	3763211	+	4.02446	NA	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	49611	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding
diff_RLAGL_Vector_cond1_3496	chr15	25993437	25993638	+	4.02433	NA	intron (NM_144523, intron 4 of 5)	intron (NM_144523, intron 4 of 5)	9171	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding
diff_RLAGL_Vector_cond1_1354	chr10	115587084	115587285	+	4.02386	NA	intron (NM_010195, intron 1 of 17)	intron (NM_010195, intron 1 of 17)	596	NM_010195	14160	Mm.42103	NM_010195	ENSMUSG00000020140	Lgr5	FEX|Gpr49	leucine rich repeat containing G protein coupled receptor 5	protein-coding
diff_RLAGL_Vector_cond1_762	chr1	185070648	185070946	+	4.02357	NA	Intergenic	L1MB4|LINE|L1	-71248	NM_145515	226778	Mm.7445	NM_145515	ENSMUSG00000026620	Mark1	AW491150|B930025N23Rik|Emk3|Par-1c|mKIAA1477|mPar-1c	MAP/microtubule affinity regulating kinase 1	protein-coding
diff_RLAGL_Vector_cond1_3077	chr14	33214558	33214820	+	4.02269	NA	Intergenic	Intergenic	-2134	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding
diff_RLAGL_Vector_cond1_2909	chr13	106947076	106947432	+	4.02240	NA	exon (NM_025447, exon 1 of 12)	exon (NM_025447, exon 1 of 12)	125	NM_025447	66254	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_5494	chr2	59747805	59748096	+	4.02229	NA	intron (NM_198294, intron 4 of 26)	L1ME1|LINE|L1	101181	NM_001290659	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
diff_RLAGL_Vector_cond1_640	chr1	165460307	165460679	+	4.02086	NA	promoter-TSS (NM_028759)	promoter-TSS (NM_028759)	-30	NM_028759	74106	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding
diff_RLAGL_Vector_cond1_4377	chr17	33033117	33033437	+	4.02069	NA	intron (NM_028543, intron 1 of 3)	intron (NM_028543, intron 1 of 3)	104	NM_028543	73451	Mm.129453	NM_028543	ENSMUSG00000067430	Zfp763	1700065O13Rik|AI839635	zinc finger protein 763	protein-coding
diff_RLAGL_Vector_cond1_1271	chr10	97158777	97158988	+	4.02049	NA	Intergenic	Intergenic	123114	NR_045358	75301	Mm.108650	NR_045358		4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA
diff_RLAGL_Vector_cond1_216	chr1	64226147	64226453	+	4.01985	NA	Intergenic	Intergenic	-104911	NM_033563	93691	Mm.29466	NM_033563		Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding
diff_RLAGL_Vector_cond1_1125	chr10	74922835	74923045	+	4.01968	NA	Intergenic	Intergenic	-44291	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding
diff_RLAGL_Vector_cond1_10370	chr9	122294570	122294805	+	4.01942	NA	promoter-TSS (NM_001271873)	promoter-TSS (NM_001271873)	-264	NM_001271873	102566	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding
diff_RLAGL_Vector_cond1_3280	chr14	99237166	99237413	+	4.01930	NA	intron (NM_029320, intron 16 of 17)	intron (NM_029320, intron 16 of 17)	-61402	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding
diff_RLAGL_Vector_cond1_3226	chr14	76479900	76480275	+	4.01912	NA	intron (NM_001310646, intron 3 of 4)	intron (NM_001310646, intron 3 of 4)	-8349	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding
diff_RLAGL_Vector_cond1_7894	chr5	107272765	107273060	+	4.01902	NA	intron (NM_011578, intron 1 of 16)	intron (NM_011578, intron 1 of 16)	16683	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding
diff_RLAGL_Vector_cond1_7633	chr5	35055127	35055422	+	4.01694	NA	Intergenic	Intergenic	-1810	NM_172708	231134	Mm.205483	NM_172708	ENSMUSG00000044716	Dok7	A930013K19Rik|AW049091|Dok-7|EF-12|Oit5	docking protein 7	protein-coding
diff_RLAGL_Vector_cond1_8554	chr6	113099709	113099917	+	4.01650	NA	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	22174	NM_028385	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_3128	chr14	50924580	50924866	+	4.01612	NA	promoter-TSS (NM_009687)	promoter-TSS (NM_009687)	170	NM_133676	66246	Mm.274791	NM_133676		Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding
diff_RLAGL_Vector_cond1_1999	chr11	119052658	119052922	+	4.01595	NA	Intergenic	Intergenic	-11877	NM_013926	30951	Mm.99953	NM_013926		Cbx8	Pc3	chromobox 8	protein-coding
diff_RLAGL_Vector_cond1_5012	chr18	82855694	82855983	+	4.01565	NA	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-59	NR_125720	73985	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA
diff_RLAGL_Vector_cond1_9195	chr7	112825549	112825818	+	4.01438	NA	intron (NM_001166584, intron 2 of 13)	intron (NM_001166584, intron 2 of 13)	66299	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding
diff_RLAGL_Vector_cond1_4464	chr17	48409885	48410198	+	4.01429	NA	promoter-TSS (NM_001289490)	promoter-TSS (NM_001289490)	41	NM_001289490	106821	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding
diff_RLAGL_Vector_cond1_9048	chr7	71412243	71412475	+	4.01419	NA	Intergenic	Intergenic	-497336	NR_130995	78156	Mm.243818	NR_130995		4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA
diff_RLAGL_Vector_cond1_2869	chr13	90799258	90799489	+	4.01011	NA	Intergenic	Intergenic	105982	NM_001145879	435376	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
diff_RLAGL_Vector_cond1_636	chr1	164543138	164543347	+	4.00982	NA	Intergenic	Intergenic	-84887	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding
diff_RLAGL_Vector_cond1_6033	chr2	167823461	167823787	+	4.00839	NA	Intergenic	Intergenic	-108703	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
diff_RLAGL_Vector_cond1_7583	chr5	23844207	23844407	+	4.00762	NA	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-162	NM_025394	66169	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7 homolog (yeast)	protein-coding
diff_RLAGL_Vector_cond1_4781	chr18	21300476	21300825	+	4.00752	NA	promoter-TSS (NM_001033445)	promoter-TSS (NM_001033445)	-511	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem	C86169|Fam59a|Gm944|mKIAA4238	GRB2 associated, regulator of MAPK1	protein-coding
diff_RLAGL_Vector_cond1_5517	chr2	63129325	63129533	+	4.00740	NA	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	54858	NM_133207	170738	Mm.242532	NM_133207		Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding
diff_RLAGL_Vector_cond1_6822	chr4	11146721	11146962	+	4.00676	NA	Intergenic	Intergenic	-9600	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding
diff_RLAGL_Vector_cond1_488	chr1	132541095	132541416	+	4.00652	NA	intron (NM_177129, intron 1 of 22)	intron (NM_177129, intron 1 of 22)	1685	NM_177129	21367	Mm.260861	NM_011531		Cntn2	D130012K04Rik|TAG-1|Tax	contactin 2	protein-coding
diff_RLAGL_Vector_cond1_4631	chr17	81065062	81065286	+	4.00639	NA	promoter-TSS (NM_028138)	promoter-TSS (NM_028138)	-89	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_4497	chr17	55945038	55945517	+	4.00605	NA	promoter-TSS (NM_146249)	promoter-TSS (NM_146249)	-18	NM_146249	240120	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding
diff_RLAGL_Vector_cond1_9808	chr8	117771645	117772000	+	4.00586	NA	Intergenic	Intergenic	30107	NM_026758	68533	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding
diff_RLAGL_Vector_cond1_6198	chr3	20614752	20615066	+	4.00498	NA	Intergenic	RLTR13B4|LTR|ERVK	-247732	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding
diff_RLAGL_Vector_cond1_6709	chr3	148421439	148421661	+	4.00440	NA	Intergenic	Intergenic	533085	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
diff_RLAGL_Vector_cond1_1935	chr11	111702457	111702732	+	4.00407	NA	Intergenic	Lx8|LINE|L1	636430	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
diff_RLAGL_Vector_cond1_16	chr1	6875513	6875758	+	4.00264	NA	Intergenic	Intergenic	145584	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
diff_RLAGL_Vector_cond1_3712	chr15	77956586	77956857	+	4.00211	NA	promoter-TSS (NM_001168260)	promoter-TSS (NM_001168260)	1	NM_001168260	239554	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_394	chr1	103762668	103762973	+	4.00201	NA	Intergenic	Intergenic	-1005999	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
diff_RLAGL_Vector_cond1_8047	chr5	137419998	137420252	+	4.00177	NA	intron (NM_011741, intron 44 of 87)	intron (NM_011741, intron 44 of 87)	56939	NM_011741	22635	Mm.7984	NM_011741	ENSMUSG00000079173	Zan	Zan-test	zonadhesin	protein-coding
diff_RLAGL_Vector_cond1_8106	chr5	148598439	148598691	+	4.00165	NA	Intergenic	Intergenic	-45777	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding
diff_RLAGL_Vector_cond1_8893	chr7	30051165	30051422	+	4.00149	NA	intron (NM_011748, intron 1 of 5)	CpG	103	NM_178733	243906	Mm.347644	NM_011748		Zfp14	4732429I09Rik|Krox-9|Zfp-14|mKIAA1559	zinc finger protein 14	protein-coding
diff_RLAGL_Vector_cond1_8021	chr5	134418406	134418622	+	4.00112	NA	intron (NM_001081469, intron 1 of 27)	intron (NM_001081469, intron 1 of 27)	37748	NM_001081465	57080	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding
diff_RLAGL_Vector_cond1_10538	chrX	130044669	130044892	+	4.00067	NA	intron (NM_172493, intron 17 of 26)	intron (NM_172493, intron 17 of 26)	295038	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding
diff_RLAGL_Vector_cond1_10003	chr9	35105704	35105944	+	4.00041	NA	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-10904	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA
diff_RLAGL_Vector_cond1_3542	chr15	41751354	41751640	+	3.99939	NA	intron (NM_001130166, intron 3 of 16)	intron (NM_001130166, intron 3 of 16)	-37537	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
diff_RLAGL_Vector_cond1_6244	chr3	35249185	35249396	+	3.99868	NA	Intergenic	Intergenic	-326639	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA
diff_RLAGL_Vector_cond1_3408	chr15	3578733	3578972	+	3.99866	NA	intron (NM_010284, intron 1 of 10)	intron (NM_010284, intron 1 of 10)	2990	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding
diff_RLAGL_Vector_cond1_8913	chr7	35586158	35586543	+	3.99766	NA	promoter-TSS (NM_145840)	promoter-TSS (NM_145840)	103	NM_178263	245886	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding
diff_RLAGL_Vector_cond1_6062	chr2	171760560	171760990	+	3.99608	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	202024	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA
diff_RLAGL_Vector_cond1_9903	chr9	8004452	8004957	+	3.99555	NA	promoter-TSS (NM_009534)	promoter-TSS (NM_009534)	-108	NM_001171147	22601	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_5553	chr2	73892882	73893108	+	3.99454	NA	promoter-TSS (NM_001284373)	promoter-TSS (NM_001284373)	-356	NM_001284373	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_8977	chr7	49245941	49246153	+	3.99441	NA	promoter-TSS (NM_175272)	promoter-TSS (NM_175272)	-142	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding
diff_RLAGL_Vector_cond1_9748	chr8	105827268	105827513	+	3.99441	NA	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-40	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding
diff_RLAGL_Vector_cond1_6083	chr2	173749252	173749505	+	3.99426	NA	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	11807	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding
diff_RLAGL_Vector_cond1_10518	chrX	109136781	109137156	+	3.99424	NA	intron (NM_019989, intron 1 of 3)	LTR40b|LTR|ERVL	41561	NM_019989	56726	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding
diff_RLAGL_Vector_cond1_1440	chr10	128587768	128588051	+	3.99408	NA	intron (NM_010153, intron 1 of 27)	intron (NM_010153, intron 1 of 27)	1592	NM_010153	13867	Mm.373043	NM_010153		Erbb3	C76256|Erbb-3|Erbb3r|Her3	v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)	protein-coding
diff_RLAGL_Vector_cond1_4444	chr17	46552893	46553154	+	3.99329	NA	TTS (NR_105942)	TTS (NR_105942)	866	NR_105942	102466778		NR_105942	ENSMUSG00000106514	Mir6976	mmu-mir-6976	microRNA 6976	ncRNA
diff_RLAGL_Vector_cond1_7264	chr4	122985199	122985403	+	3.99288	NA	Intergenic	Intergenic	-10630	NM_001303121	16918	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc myelocytomatosis viral oncogene homolog, lung carcinoma derived (avian)	protein-coding
diff_RLAGL_Vector_cond1_6043	chr2	169633613	169633839	+	3.99204	NA	promoter-TSS (NM_080455)	promoter-TSS (NM_080455)	80	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
diff_RLAGL_Vector_cond1_9673	chr8	83724684	83725062	+	3.99190	NA	promoter-TSS (NR_106188)	promoter-TSS (NR_106188)	-889	NR_106188	102465897		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA
diff_RLAGL_Vector_cond1_4668	chr17	87611686	87611895	+	3.99179	NA	Intergenic	Intergenic	-24189	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding
diff_RLAGL_Vector_cond1_6205	chr3	21294851	21295066	+	3.99166	NA	Intergenic	MTD|LTR|ERVL-MaLR	-781694	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_14	chr1	6510279	6510507	+	3.99152	NA	intron (NM_001244693, intron 2 of 22)	intron (NM_001244693, intron 2 of 22)	23162	NM_001244693	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
diff_RLAGL_Vector_cond1_2348	chr12	86726215	86726568	+	3.98985	NA	promoter-TSS (NM_144524)	promoter-TSS (NM_144524)	69	NM_144524	68737	Mm.63979	NM_144524	ENSMUSG00000021257	Angel1	1110030H02Rik|mKIAA0759	angel homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8227	chr6	24665135	24665374	+	3.98906	NA	promoter-TSS (NM_028459)	promoter-TSS (NM_028459)	-259	NM_001167745	73178	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding
diff_RLAGL_Vector_cond1_9217	chr7	122804036	122804364	+	3.98860	NA	Intergenic	Intergenic	132456	NM_019430	54376	Mm.444212	NM_019430		Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding
diff_RLAGL_Vector_cond1_9986	chr9	29650767	29650975	+	3.98854	NA	intron (NM_172290, intron 1 of 7)	intron (NM_172290, intron 1 of 7)	312258	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding
diff_RLAGL_Vector_cond1_3213	chr14	73632733	73632987	+	3.98707	NA	Intergenic	Intergenic	80074	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding
diff_RLAGL_Vector_cond1_10035	chr9	41207455	41207790	+	3.98704	NA	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1467	NR_040392	78500	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA
diff_RLAGL_Vector_cond1_6090	chr2	174110080	174110306	+	3.98637	NA	promoter-TSS (NM_213733)	promoter-TSS (NM_213733)	-158	NM_213733	228961	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding
diff_RLAGL_Vector_cond1_10257	chr9	102689912	102690125	+	3.98372	NA	Intergenic	CpG	-27786	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding
diff_RLAGL_Vector_cond1_4909	chr18	62191175	62191422	+	3.98315	NA	Intergenic	Intergenic	-11317	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding
diff_RLAGL_Vector_cond1_7587	chr5	24427998	24428342	+	3.98278	NA	intron (NM_009207, intron 2 of 22)	intron (NM_009207, intron 2 of 22)	649	NM_001253892	20535	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding
diff_RLAGL_Vector_cond1_6940	chr4	43000532	43000771	+	3.98176	NA	promoter-TSS (NM_009503)	promoter-TSS (NM_009503)	-144	NM_009503	269523	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding
diff_RLAGL_Vector_cond1_10137	chr9	66919799	66920118	+	3.98035	NA	promoter-TSS (NM_173413)	promoter-TSS (NM_173413)	-253	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_9031	chr7	67515152	67515376	+	3.97973	NA	intron (NM_175124, intron 9 of 9)	intron (NM_175124, intron 9 of 9)	129972	NR_028144	67867	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding
diff_RLAGL_Vector_cond1_1738	chr11	72689791	72690163	+	3.97947	NA	promoter-TSS (NM_009671)	promoter-TSS (NM_009671)	-25	NM_009671	11736	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9624	chr8	73100638	73101015	+	3.97937	NA	intron (NM_010687, intron 4 of 14)	RLTR1D|LTR|ERV1	84314	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA
diff_RLAGL_Vector_cond1_111	chr1	30873439	30873721	+	3.97872	NA	Intergenic	CpG	-10324	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
diff_RLAGL_Vector_cond1_8276	chr6	40237466	40237703	+	3.97843	NA	intron (NM_001004182, intron 2 of 2)	MER117|DNA|hAT-Charlie	-87894	NM_023538	69923	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding
diff_RLAGL_Vector_cond1_1510	chr11	12584910	12585143	+	3.97608	NA	Intergenic	MTD|LTR|ERVL-MaLR	-120066	NM_172496	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
diff_RLAGL_Vector_cond1_6124	chr2	180162338	180162648	+	3.97486	NA	3' UTR (NM_144500, exon 14 of 14)	3' UTR (NM_144500, exon 14 of 14)	-9095	NM_019822	56436	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding
diff_RLAGL_Vector_cond1_7880	chr5	103799386	103799624	+	3.97395	NA	intron (NM_001080798, intron 3 of 19)	intron (NM_001080798, intron 3 of 19)	44932	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding
diff_RLAGL_Vector_cond1_7261	chr4	121321979	121322329	+	3.97367	NA	intron (NM_001033791, intron 1 of 3)	intron (NM_001033791, intron 1 of 3)	2763	NM_001033791	545677	Mm.372731	NM_001033791	ENSMUSG00000073764	Gm12888	OTTMUSG00000008911	predicted gene 12888	protein-coding
diff_RLAGL_Vector_cond1_9118	chr7	89980655	89980914	+	3.97311	NA	5' UTR (NM_021876, exon 1 of 12)	5' UTR (NM_021876, exon 1 of 12)	192	NM_021876	13626	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	ENSMUSG00000039373|l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding
diff_RLAGL_Vector_cond1_10125	chr9	64022934	64023281	+	3.97309	NA	Intergenic	CpG-15077	-1048	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding
diff_RLAGL_Vector_cond1_2586	chr13	22043021	22043276	+	3.97282	NA	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	-82	NM_178198	319183	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding
diff_RLAGL_Vector_cond1_2476	chr12	116271167	116271380	+	3.97259	NA	Intergenic	Intergenic	-8248	NM_146039	217935	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding
diff_RLAGL_Vector_cond1_2937	chr13	113034969	113035418	+	3.97233	NA	promoter-TSS (NR_030452)	promoter-TSS (NR_030452)	-186	NM_001281487	238896		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding
diff_RLAGL_Vector_cond1_7490	chr4	155223141	155223479	+	3.97147	NA	promoter-TSS (NM_011385)	promoter-TSS (NM_011385)	-775	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding
diff_RLAGL_Vector_cond1_7104	chr4	86690332	86690569	+	3.96955	NA	Intergenic	Intergenic	-20391	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding
diff_RLAGL_Vector_cond1_4426	chr17	43667066	43667355	+	3.96838	NA	promoter-TSS (NM_028711)	promoter-TSS (NM_028711)	-162	NM_018887	56050	Mm.17991	NM_018887	ENSMUSG00000023963	Cyp39a1	mCYP39A1	cytochrome P450, family 39, subfamily a, polypeptide 1	protein-coding
diff_RLAGL_Vector_cond1_6514	chr3	105705299	105705532	+	3.96824	NA	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	-43	NM_001163356	109050	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik	family with sequence similarity 212, member B	protein-coding
diff_RLAGL_Vector_cond1_6023	chr2	166186290	166186498	+	3.96784	NA	Intergenic	Intergenic	-30711	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding
diff_RLAGL_Vector_cond1_3958	chr16	38088862	38089513	+	3.96775	NA	promoter-TSS (NR_033221)	promoter-TSS (NR_033221)	73	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA
diff_RLAGL_Vector_cond1_1010	chr10	39907356	39907605	+	3.96616	NA	Intergenic	Intergenic	-8242	NR_033628	213332	Mm.484359	NR_033628		AA474331	-	expressed sequence AA474331	pseudo
diff_RLAGL_Vector_cond1_659	chr1	168659457	168659656	+	3.96497	NA	Intergenic	RMER1B|Other|Other	168913	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA
diff_RLAGL_Vector_cond1_5612	chr2	85710725	85710997	+	3.96440	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	-10546	NM_146572	258565	Mm.377570	NM_146572	ENSMUSG00000043226	Olfr1009	MOR175-3	olfactory receptor 1009	protein-coding
diff_RLAGL_Vector_cond1_3898	chr16	22429142	22429381	+	3.96429	NA	intron (NM_023794, intron 5 of 12)	intron (NM_023794, intron 5 of 12)	10309	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding
diff_RLAGL_Vector_cond1_9861	chr8	126829487	126829807	+	3.96425	NA	Intergenic	Intergenic	116274	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding
diff_RLAGL_Vector_cond1_2010	chr11	120232584	120232909	+	3.96407	NA	promoter-TSS (NM_198423)	promoter-TSS (NM_198423)	-201	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding
diff_RLAGL_Vector_cond1_8078	chr5	141884265	141884525	+	3.96394	NA	intron (NM_177879, intron 5 of 44)	intron (NM_177879, intron 5 of 44)	-517102	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding
diff_RLAGL_Vector_cond1_7984	chr5	129019914	129020269	+	3.96381	NA	promoter-TSS (NM_009391)	promoter-TSS (NM_009391)	-65	NM_009391	19384	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_9599	chr8	69625481	69625706	+	3.96226	NA	promoter-TSS (NM_172754)	promoter-TSS (NM_172754)	-45	NM_172754	234362	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding
diff_RLAGL_Vector_cond1_9879	chr9	3532144	3532456	+	3.96007	NA	promoter-TSS (NM_001033322)	promoter-TSS (NM_001033322)	-49	NM_001033322	234889	Mm.91240	NM_001033322		Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding
diff_RLAGL_Vector_cond1_7837	chr5	93093093	93093325	+	3.95974	NA	promoter-TSS (NM_001009818)	promoter-TSS (NM_001009818)	-207	NM_001009818	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding
diff_RLAGL_Vector_cond1_751	chr1	182957497	182957722	+	3.95895	NA	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	2821	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding
diff_RLAGL_Vector_cond1_736	chr1	180561312	180561511	+	3.95791	NA	Intergenic	RLTR40|LTR|ERVK	-7564	NM_007415	11545	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding
diff_RLAGL_Vector_cond1_5025	chr18	86383910	86384136	+	3.95712	NA	Intergenic	Intergenic	-10929	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
diff_RLAGL_Vector_cond1_4209	chr16	94569325	94569637	+	3.95646	NA	promoter-TSS (NM_007890)	promoter-TSS (NM_007890)	-725	NM_007890	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding
diff_RLAGL_Vector_cond1_2485	chr12	117843834	117844153	+	3.95499	NA	intron (NM_146040, intron 1 of 9)	CpG	132	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding
diff_RLAGL_Vector_cond1_5424	chr2	44920539	44920836	+	3.95474	NA	Intergenic	Intergenic	-59065	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2587	chr13	23369164	23369424	+	3.95463	NA	promoter-TSS (NM_001111107)	promoter-TSS (NM_001111107)	-86	NM_172586	218100	Mm.286454	NM_172586	ENSMUSG00000046351	Zfp322a	Znf322|Znf322a	zinc finger protein 322A	protein-coding
diff_RLAGL_Vector_cond1_9814	chr8	119436931	119437233	+	3.95398	NA	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-80	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding
diff_RLAGL_Vector_cond1_7134	chr4	95483608	95483838	+	3.95375	NA	Intergenic	Intergenic	-73784	NM_001113412	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding
diff_RLAGL_Vector_cond1_10375	chr9	123021141	123021455	+	3.95341	NA	promoter-TSS (NM_025339)	promoter-TSS (NM_025339)	-28	NM_025339	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding
diff_RLAGL_Vector_cond1_9201	chr7	115398332	115398590	+	3.95218	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	403148	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding
diff_RLAGL_Vector_cond1_3002	chr14	11553293	11553554	+	3.95210	NA	promoter-TSS (NM_008981)	promoter-TSS (NM_008981)	-130	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding
diff_RLAGL_Vector_cond1_3155	chr14	59025697	59025919	+	3.95156	NA	Intergenic	RLTR44C|LTR|ERVK	117085	NM_026461	67932	Mm.65550	NM_026461	ENSMUSG00000021977	1700129C05Rik	-	RIKEN cDNA 1700129C05 gene	protein-coding
diff_RLAGL_Vector_cond1_4329	chr17	24886433	24886691	+	3.95143	NA	promoter-TSS (NM_001163751)	promoter-TSS (NM_001163751)	-112	NM_001163751	79043	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding
diff_RLAGL_Vector_cond1_4600	chr17	75395284	75395536	+	3.95121	NA	Intergenic	Lx8|LINE|L1	-40495	NM_001166493	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding
diff_RLAGL_Vector_cond1_3984	chr16	44139893	44140171	+	3.94969	NA	5' UTR (NM_028108, exon 1 of 5)	5' UTR (NM_028108, exon 1 of 5)	223	NM_028108	72117	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding
diff_RLAGL_Vector_cond1_2747	chr13	63430996	63431199	+	3.94954	NA	intron (NM_007985, intron 1 of 14)	intron (NM_007985, intron 1 of 14)	648	NM_001042673	14088	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc|mir-3074-1	Fanconi anemia, complementation group C	protein-coding
diff_RLAGL_Vector_cond1_4864	chr18	46390293	46390546	+	3.94892	NA	Intergenic	Intergenic	75397	NR_045438	72076	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo
diff_RLAGL_Vector_cond1_1197	chr10	83666621	83666880	+	3.94889	NA	Intergenic	Intergenic	-18086	NM_145220	216190	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding
diff_RLAGL_Vector_cond1_2645	chr13	38170965	38171243	+	3.94816	NA	intron (NM_023842, intron 4 of 23)	intron (NM_023842, intron 4 of 23)	19810	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding
diff_RLAGL_Vector_cond1_1751	chr11	75569040	75569247	+	3.94805	NA	intron (NM_001199284, intron 11 of 13)	intron (NM_001199284, intron 11 of 13)	17714	NR_039553	100628624		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA
diff_RLAGL_Vector_cond1_9172	chr7	105650654	105651042	+	3.94740	NA	Intergenic	Intergenic	10308	NM_019502	14356	Mm.220330	NM_019502		Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding
diff_RLAGL_Vector_cond1_5673	chr2	105687560	105687794	+	3.94703	NA	intron (NM_001310144, intron 6 of 11)	intron (NM_001310144, intron 6 of 11)	5214	NM_001310146	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding
diff_RLAGL_Vector_cond1_8129	chr6	3341035	3341282	+	3.94582	NA	Intergenic	IAPEY4_I-int|LTR|ERVK	52639	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo
diff_RLAGL_Vector_cond1_4383	chr17	33955560	33955779	+	3.94498	NA	promoter-TSS (NM_172620)	promoter-TSS (NM_172620)	-28	NM_011296	20084	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding
diff_RLAGL_Vector_cond1_2341	chr12	84996050	84996280	+	3.94487	NA	promoter-TSS (NM_178363)	promoter-TSS (NM_178363)	-156	NM_178363	56531	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding
diff_RLAGL_Vector_cond1_678	chr1	172652509	172652710	+	3.94398	NA	Intergenic	Intergenic	-19635	NM_026725	68440	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding
diff_RLAGL_Vector_cond1_2399	chr12	102730878	102731123	+	3.94392	NA	Intergenic	L2c|LINE|L2	12661	NM_022323	64113	Mm.291222	NM_022323		Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding
diff_RLAGL_Vector_cond1_7635	chr5	35583088	35583288	+	3.94379	NA	non-coding (NR_045807, exon 4 of 4)	non-coding (NR_045807, exon 4 of 4)	128	NM_030721	80911	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding
diff_RLAGL_Vector_cond1_8674	chr6	134064908	134065297	+	3.94369	NA	intron (NM_007961, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	29402	NM_001303102	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding
diff_RLAGL_Vector_cond1_2786	chr13	69002273	69002573	+	3.94328	NA	Intergenic	MER45A|DNA|hAT-Tip100	-2882	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding
diff_RLAGL_Vector_cond1_823	chr1	193905812	193906022	+	3.94235	NA	Intergenic	Intergenic	316842	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA
diff_RLAGL_Vector_cond1_8620	chr6	125215259	125215569	+	3.94179	NA	promoter-TSS (NM_009496)	promoter-TSS (NM_009496)	-167	NM_001080557	22317	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding
diff_RLAGL_Vector_cond1_4341	chr17	26123279	26123534	+	3.94173	NA	promoter-TSS (NM_024227)	promoter-TSS (NM_024227)	-97	NM_024227	68611	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding
diff_RLAGL_Vector_cond1_5026	chr18	86395416	86395673	+	3.94097	NA	5' UTR (NM_144946, exon 1 of 11)	5' UTR (NM_144946, exon 1 of 11)	592	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
diff_RLAGL_Vector_cond1_467	chr1	128416930	128417259	+	3.94090	NA	intron (NM_145507, intron 1 of 3)	CpG	322	NM_177445	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding
diff_RLAGL_Vector_cond1_5717	chr2	114522763	114522995	+	3.94090	NA	intron (NM_025675, intron 7 of 8)	intron (NM_025675, intron 7 of 8)	132049	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
diff_RLAGL_Vector_cond1_8319	chr6	51612504	51612914	+	3.93953	NA	Intergenic	CpG	68186	NM_028035	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding
diff_RLAGL_Vector_cond1_8168	chr6	11925824	11926148	+	3.93704	NA	5' UTR (NM_029404, exon 1 of 17)	5' UTR (NM_029404, exon 1 of 17)	105	NM_001168382	75725	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding
diff_RLAGL_Vector_cond1_5816	chr2	136149038	136149301	+	3.93506	NA	intron (NM_172858, intron 3 of 9)	intron (NM_172858, intron 3 of 9)	91242	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding
diff_RLAGL_Vector_cond1_1905	chr11	103773917	103774159	+	3.93457	NA	promoter-TSS (NM_009521)	promoter-TSS (NM_009521)	-137	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding
diff_RLAGL_Vector_cond1_4356	chr17	28930768	28931008	+	3.93450	NA	Intergenic	Intergenic	11374	NM_153390	69307	Mm.107605	NM_153390		Pxt1	1700001G18Rik|Stepp	peroxisomal, testis specific 1	protein-coding
diff_RLAGL_Vector_cond1_8963	chr7	45731067	45731269	+	3.93402	NA	intron (NM_017465, intron 6 of 6)	intron (NM_017465, intron 6 of 6)	-5352	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding
diff_RLAGL_Vector_cond1_10294	chr9	108290236	108290583	+	3.93363	NA	promoter-TSS (NM_025449)	promoter-TSS (NM_025449)	-48	NM_025449	66257	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding
diff_RLAGL_Vector_cond1_260	chr1	72307282	72307488	+	3.93357	NA	promoter-TSS (NM_009533)	promoter-TSS (NM_009533)	-36	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding
diff_RLAGL_Vector_cond1_9384	chr8	13677571	13677774	+	3.93355	NA	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-85	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|scat	RAS p21 protein activator 3	protein-coding
diff_RLAGL_Vector_cond1_3063	chr14	28501368	28501602	+	3.93335	NA	Intergenic	Intergenic	-3988	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding
diff_RLAGL_Vector_cond1_6551	chr3	116702677	116702898	+	3.93325	NA	intron (NM_144902, intron 1 of 7)	intron (NM_144902, intron 1 of 7)	9493	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding
diff_RLAGL_Vector_cond1_5435	chr2	46512581	46512875	+	3.93323	NA	Intergenic	Intergenic	816123	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA
diff_RLAGL_Vector_cond1_5578	chr2	79618960	79619239	+	3.93233	NA	Intergenic	Intergenic	-16326	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding
diff_RLAGL_Vector_cond1_6218	chr3	24726983	24727183	+	3.93142	NA	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	1426224	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
diff_RLAGL_Vector_cond1_2210	chr12	44269314	44269592	+	3.93000	NA	intron (NM_026164, intron 1 of 9)	CpG	299	NM_026164	67452	Mm.54126	NM_026164		Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding
diff_RLAGL_Vector_cond1_1169	chr10	80606363	80606588	+	3.92971	NA	exon (NM_001100606, exon 2 of 2)	exon (NM_001100606, exon 2 of 2)	-2785	NR_105877	102465550		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA
diff_RLAGL_Vector_cond1_1709	chr11	65787833	65788036	+	3.92888	NA	intron (NM_001316368, intron 1 of 10)	CpG	425	NM_001316368	26398	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding
diff_RLAGL_Vector_cond1_4959	chr18	73546184	73546477	+	3.92810	NA	Intergenic	LTR33|LTR|ERVL	-26375	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 homolog C (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_1692	chr11	61854271	61854507	+	3.92759	NA	intron (NM_013881, intron 1 of 26)	CpG	703	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding
diff_RLAGL_Vector_cond1_4934	chr18	67724197	67724435	+	3.92692	NA	intron (NM_001127177, intron 1 of 8)	CpG	305	NM_008977	19255	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding
diff_RLAGL_Vector_cond1_10552	chrX	134919305	134919575	+	3.92649	NA	Intergenic	Lx7|LINE|L1	44457	NM_001289736	83454	Mm.103155	NM_031259	ENSMUSG00000009941	Nxf2	4930455N06Rik|Nxf-b	nuclear RNA export factor 2	protein-coding
diff_RLAGL_Vector_cond1_7337	chr4	134000782	134001032	+	3.92489	NA	promoter-TSS (NM_026144)	promoter-TSS (NM_026144)	-43	NM_026144	67422	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding
diff_RLAGL_Vector_cond1_10151	chr9	71485938	71486137	+	3.92477	NA	promoter-TSS (NM_178602)	promoter-TSS (NM_178602)	-54	NM_178602	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding
diff_RLAGL_Vector_cond1_10335	chr9	118512675	118512889	+	3.92467	NA	intron (NM_018748, intron 1 of 23)	intron (NM_018748, intron 1 of 23)	6464	NM_018748	54214	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding
diff_RLAGL_Vector_cond1_3626	chr15	61446123	61446416	+	3.92427	NA	Intergenic	Intergenic	328182	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA
diff_RLAGL_Vector_cond1_3830	chr15	102017867	102018378	+	3.92424	NA	Intergenic	Intergenic	-10094	NM_010664	16668	Mm.22479	NM_010664	ENSMUSG00000023043	Krt18	CK18|K18|Krt1-18	keratin 18	protein-coding
diff_RLAGL_Vector_cond1_6671	chr3	145072541	145072753	+	3.92323	NA	intron (NM_178697, intron 12 of 13)	intron (NM_178697, intron 12 of 13)	26394	NM_178697	229933	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding
diff_RLAGL_Vector_cond1_7130	chr4	95053212	95053515	+	3.92248	NA	Intergenic	Intergenic	-1141	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding
diff_RLAGL_Vector_cond1_4268	chr17	13542371	13542570	+	3.92143	NA	intron (NR_045436, intron 2 of 4)	intron (NR_045436, intron 2 of 4)	11624	NR_045437	72578	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA
diff_RLAGL_Vector_cond1_9746	chr8	105471282	105471500	+	3.91962	NA	promoter-TSS (NM_026481)	promoter-TSS (NM_026481)	31	NM_026481	67971	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding
diff_RLAGL_Vector_cond1_8518	chr6	100802448	100802753	+	3.91855	NA	intron (NM_198612, intron 6 of 6)	intron (NM_198612, intron 6 of 6)	-31038	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding
diff_RLAGL_Vector_cond1_2980	chr13	119790631	119790929	+	3.91845	NA	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	26	NM_001302549	72465	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding
diff_RLAGL_Vector_cond1_8574	chr6	115676545	115677007	+	3.91810	NA	promoter-TSS (NM_029780)	promoter-TSS (NM_029780)	-141	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding
diff_RLAGL_Vector_cond1_9762	chr8	108555998	108556301	+	3.91424	NA	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	28528	NR_077224	109215	Mm.65282	NR_077224		Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA
diff_RLAGL_Vector_cond1_5090	chr19	12595477	12595723	+	3.91315	NA	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	966	NR_015503	74333	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA
diff_RLAGL_Vector_cond1_2241	chr12	54191060	54191263	+	3.91258	NA	intron (NM_028133, intron 1 of 4)	intron (NM_028133, intron 1 of 4)	12713	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding
diff_RLAGL_Vector_cond1_3840	chr15	103220759	103220996	+	3.91197	NA	intron (NM_001076789, intron 1 of 4)	intron (NM_001076789, intron 1 of 4)	-5525	NM_007626	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding
diff_RLAGL_Vector_cond1_2738	chr13	62858057	62858278	+	3.91079	NA	exon (NM_007994, exon 1 of 7)	exon (NM_007994, exon 1 of 7)	203	NM_007994	14120	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding
diff_RLAGL_Vector_cond1_7784	chr5	73490661	73490985	+	3.91037	NA	promoter-TSS (NM_001190733)	promoter-TSS (NM_001190733)	-203	NM_001190733	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8200	chr6	18248490	18248822	+	3.91000	NA	intron (NM_021050, intron 11 of 26)	intron (NM_021050, intron 11 of 26)	77969	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding
diff_RLAGL_Vector_cond1_4207	chr16	94313339	94313619	+	3.90987	NA	Intergenic	CpG	-14943	NM_133229	170765	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply3 homolog (zebrafish)	protein-coding
diff_RLAGL_Vector_cond1_6165	chr3	10381658	10381873	+	3.90919	NA	intron (NM_025519, intron 1 of 4)	intron (NM_025519, intron 1 of 4)	14792	NM_025519	66371	Mm.366147	NM_025519		Chmp4c	2010012P02Rik|2210015K02Rik|2310010I16Rik|Shax3|Snf7-3	charged multivesicular body protein 4C	protein-coding
diff_RLAGL_Vector_cond1_1161	chr10	80167856	80168084	+	3.90840	NA	intron (NM_007705, intron 1 of 6)	CpG	129	NM_007705	12696	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding
diff_RLAGL_Vector_cond1_7372	chr4	138943774	138944013	+	3.90758	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-23219	NM_025786	66825	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding
diff_RLAGL_Vector_cond1_1865	chr11	98550834	98551238	+	3.90738	NA	promoter-TSS (NM_001166494)	promoter-TSS (NM_001166494)	-61	NM_001166495	69376	Mm.55996	NM_027061	ENSMUSG00000017195	Zpbp2	1700017D11Rik|2610022C02Rik|ZPBPL	zona pellucida binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_1964	chr11	115877687	115877903	+	3.90672	NA	Intergenic	Intergenic	-22344	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding
diff_RLAGL_Vector_cond1_3946	chr16	35490651	35490994	+	3.90621	NA	promoter-TSS (NM_028295)	promoter-TSS (NM_028295)	51	NM_028295	72599	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding
diff_RLAGL_Vector_cond1_5558	chr2	75831984	75832236	+	3.90574	NA	promoter-TSS (NM_172666)	promoter-TSS (NM_172666)	-67	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding
diff_RLAGL_Vector_cond1_10280	chr9	106903817	106904016	+	3.90538	NA	intron (NM_153413, intron 49 of 52)	intron (NM_153413, intron 49 of 52)	-11978	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding
diff_RLAGL_Vector_cond1_10357	chr9	120900952	120901448	+	3.90508	NA	Intergenic	Intergenic	14050	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA
diff_RLAGL_Vector_cond1_5790	chr2	131909893	131910220	+	3.90499	NA	intron (NM_011170, intron 1 of 2)	CpG	128	NM_001278256	19122	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding
diff_RLAGL_Vector_cond1_1172	chr10	80774733	80774936	+	3.90467	NA	intron (NM_199322, intron 7 of 27)	intron (NM_199322, intron 7 of 27)	19628	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_2018	chr11	120762650	120763046	+	3.90439	NA	Intergenic	Intergenic	21356	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
diff_RLAGL_Vector_cond1_7292	chr4	126468545	126468761	+	3.90346	NA	promoter-TSS (NM_153403)	promoter-TSS (NM_153403)	-232	NM_153403	236511	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding
diff_RLAGL_Vector_cond1_9530	chr8	48688225	48688489	+	3.90279	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-13667	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
diff_RLAGL_Vector_cond1_8898	chr7	30706542	30706812	+	3.90122	NA	Intergenic	Intergenic	-5532	NM_018731	11944	Mm.12821	NM_018731	ENSMUSG00000005553	Atp4a	-	ATPase, H+/K+ exchanging, gastric, alpha polypeptide	protein-coding
diff_RLAGL_Vector_cond1_8337	chr6	55342474	55342684	+	3.90087	NA	intron (NM_007472, intron 1 of 3)	intron (NM_007472, intron 1 of 3)	6280	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding
diff_RLAGL_Vector_cond1_2040	chr12	4917642	4917953	+	3.90030	NA	exon (NM_001099628, exon 1 of 31)	exon (NM_001099628, exon 1 of 31)	444	NM_001099628	320817	Mm.210966	NM_001099628		Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding
diff_RLAGL_Vector_cond1_9853	chr8	125995121	125995395	+	3.89879	NA	5' UTR (NM_008430, exon 1 of 3)	5' UTR (NM_008430, exon 1 of 3)	156	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding
diff_RLAGL_Vector_cond1_1689	chr11	61266672	61266975	+	3.89814	NA	intron (NM_007437, intron 1 of 9)	intron (NM_007437, intron 1 of 9)	363	NM_007437	11671	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding
diff_RLAGL_Vector_cond1_5791	chr2	132064205	132064432	+	3.89793	NA	intron (NM_018824, intron 12 of 15)	intron (NM_018824, intron 12 of 15)	-34330	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding
diff_RLAGL_Vector_cond1_941	chr10	26828440	26829048	+	3.89792	NA	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	56232	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding
diff_RLAGL_Vector_cond1_9202	chr7	116202267	116202511	+	3.89731	NA	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	-3828	NM_001305189	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding
diff_RLAGL_Vector_cond1_9931	chr9	15238858	15239133	+	3.89722	NA	promoter-TSS (NM_026955)	promoter-TSS (NM_026955)	-50	NM_026955	69137	Mm.41396	NM_026955	ENSMUSG00000031937	Vstm5	2200002K05Rik	V-set and transmembrane domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_7897	chr5	108651894	108652144	+	3.89685	NA	intron (NM_199011, intron 15 of 22)	intron (NM_199011, intron 15 of 22)	-8312	NM_172997	15932	Mm.358608	NM_008325	ENSMUSG00000033540	Idua	6030426D08	iduronidase, alpha-L-	protein-coding
diff_RLAGL_Vector_cond1_1669	chr11	58353208	58353428	+	3.89609	NA	Intergenic	Intergenic	22528	NM_001308168	79566	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding
diff_RLAGL_Vector_cond1_4472	chr17	49428258	49428486	+	3.89579	NA	promoter-TSS (NM_028464)	promoter-TSS (NM_028464)	8	NM_028464	56738	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding
diff_RLAGL_Vector_cond1_9751	chr8	106150348	106150571	+	3.89559	NA	promoter-TSS (NM_133792)	promoter-TSS (NM_133792)	60	NM_133792	192654	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding
diff_RLAGL_Vector_cond1_8258	chr6	34567323	34567524	+	3.89558	NA	Intergenic	Intergenic	91067	NM_007563	12183	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding
diff_RLAGL_Vector_cond1_10236	chr9	95527771	95527999	+	3.89490	NA	Intergenic	Intergenic	-15889	NM_026476	67958	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding
diff_RLAGL_Vector_cond1_181	chr1	52249223	52249454	+	3.89474	NA	Intergenic	Intergenic	-16106	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding
diff_RLAGL_Vector_cond1_6625	chr3	133211552	133211813	+	3.89373	NA	intron (NM_029953, intron 1 of 3)	intron (NM_029953, intron 1 of 3)	23207	NM_029953	77669	Mm.98630	NM_029953	ENSMUSG00000040969	Arhgef38	9130221D24Rik|D630013G24Rik	Rho guanine nucleotide exchange factor (GEF) 38	protein-coding
diff_RLAGL_Vector_cond1_1226	chr10	87915190	87915635	+	3.89357	NA	intron (NM_001111274, intron 4 of 4)	intron (NM_001111274, intron 4 of 4)	-51259	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo
diff_RLAGL_Vector_cond1_4636	chr17	82847197	82847517	+	3.89352	NA	Intergenic	Intergenic	230868	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
diff_RLAGL_Vector_cond1_895	chr10	13965555	13965757	+	3.89332	NA	promoter-TSS (NM_010437)	promoter-TSS (NM_010437)	-723	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_7757	chr5	66014057	66014299	+	3.89318	NA	Intergenic	Intergenic	-9893	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA
diff_RLAGL_Vector_cond1_2144	chr12	28635791	28636049	+	3.89267	NA	promoter-TSS (NM_011300)	promoter-TSS (NM_011300)	33	NM_011300	20115	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding
diff_RLAGL_Vector_cond1_2521	chr13	4712727	4713012	+	3.89234	NA	Intergenic	Intergenic	-103705	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding
diff_RLAGL_Vector_cond1_9227	chr7	126396819	126397108	+	3.89197	NA	promoter-TSS (NM_010900)	promoter-TSS (NM_010900)	-226	NM_010900	18020	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_9252	chr7	129938278	129938589	+	3.89191	NA	Intergenic	Intergenic	-23732	NR_046077	100043150	Mm.334264	NR_046077		Gm4265	-	predicted gene 4265	ncRNA
diff_RLAGL_Vector_cond1_5600	chr2	84826783	84826990	+	3.89156	NA	promoter-TSS (NM_013899)	promoter-TSS (NM_013899)	-135	NM_013899	30059	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding
diff_RLAGL_Vector_cond1_7606	chr5	30711954	30712188	+	3.89080	NA	5' UTR (NM_023047, exon 1 of 13)	5' UTR (NM_023047, exon 1 of 13)	176	NM_023047	65254	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding
diff_RLAGL_Vector_cond1_1343	chr10	112882862	112883106	+	3.89075	NA	Intergenic	Intergenic	46042	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding
diff_RLAGL_Vector_cond1_408	chr1	107481586	107481824	+	3.89069	NA	Intergenic	Intergenic	-29718	NM_001174170	18788	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding
diff_RLAGL_Vector_cond1_2251	chr12	55492631	55492854	+	3.89050	NA	promoter-TSS (NM_010907)	promoter-TSS (NM_010907)	-95	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding
diff_RLAGL_Vector_cond1_1019	chr10	41887133	41887507	+	3.88952	NA	promoter-TSS (NM_001013370)	promoter-TSS (NM_001013370)	-119	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding
diff_RLAGL_Vector_cond1_360	chr1	91707917	91708119	+	3.88893	NA	Intergenic	RLTRETN_Mm|LTR|ERVK	-93443	NM_007855	13345	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding
diff_RLAGL_Vector_cond1_3799	chr15	97837445	97837916	+	3.88702	NA	intron (NM_001204275, intron 1 of 24)	intron (NM_001204275, intron 1 of 24)	-5913	NM_019572	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding
diff_RLAGL_Vector_cond1_8318	chr6	51545297	51545696	+	3.88599	NA	intron (NM_028035, intron 1 of 6)	intron (NM_028035, intron 1 of 6)	973	NM_028035	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding
diff_RLAGL_Vector_cond1_568	chr1	150993183	150993427	+	3.88524	NA	5' UTR (NM_001024720, exon 1 of 107)	5' UTR (NM_001024720, exon 1 of 107)	130	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|Gm201	hemicentin 1	protein-coding
diff_RLAGL_Vector_cond1_4746	chr18	10609909	10610161	+	3.88470	NA	5' UTR (NM_001081222, exon 1 of 11)	5' UTR (NM_001081222, exon 1 of 11)	317	NM_001081222	77805	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of cohesion 1 homolog 1 (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_8842	chr7	17016973	17017229	+	3.88320	NA	intron (NM_011155, intron 2 of 12)	intron (NM_011155, intron 2 of 12)	10813	NM_011155	19060	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding
diff_RLAGL_Vector_cond1_9868	chr8	128473989	128474194	+	3.88284	NA	intron (NM_008737, intron 9 of 16)	intron (NM_008737, intron 9 of 16)	114850	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA
diff_RLAGL_Vector_cond1_2593	chr13	23746631	23746893	+	3.88223	NA	promoter-TSS (NM_175664)	promoter-TSS (NM_175664)	28	NM_175664	319178	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding
diff_RLAGL_Vector_cond1_4331	chr17	25184346	25184575	+	3.88163	NA	promoter-TSS (NM_183150)	promoter-TSS (NM_183150)	-101	NM_183150	214489	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding
diff_RLAGL_Vector_cond1_8917	chr7	38018974	38019212	+	3.88147	NA	intron (NM_011274, intron 1 of 10)	CpG	459	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding
diff_RLAGL_Vector_cond1_9071	chr7	75411372	75411611	+	3.88019	NA	Intergenic	Intergenic	-44043	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding
diff_RLAGL_Vector_cond1_5205	chr19	53330213	53330430	+	3.87932	NA	promoter-TSS (NM_001008543)	promoter-TSS (NM_001008543)	-125	NM_001008543	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
diff_RLAGL_Vector_cond1_9680	chr8	84846778	84846995	+	3.87907	NA	promoter-TSS (NM_007591)	promoter-TSS (NM_007591)	45	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding
diff_RLAGL_Vector_cond1_652	chr1	167803018	167803227	+	3.87868	NA	intron (NM_033652, intron 3 of 7)	CpG	113564	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding
diff_RLAGL_Vector_cond1_7509	chr5	3647550	3648036	+	3.87791	NA	5' UTR (NM_026033, exon 1 of 5)	5' UTR (NM_026033, exon 1 of 5)	143	NM_026033	67210	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|ENSMUSG00000073241|Odag	GATA zinc finger domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_3492	chr15	25933511	25933972	+	3.87753	NA	intron (NM_001277318, intron 1 of 6)	intron (NM_001277318, intron 1 of 6)	189	NM_001277318	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding
diff_RLAGL_Vector_cond1_4037	chr16	55895208	55895577	+	3.87656	NA	promoter-TSS (NM_001134457)	promoter-TSS (NM_001134457)	-113	NM_001134457	385658	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding
diff_RLAGL_Vector_cond1_8041	chr5	136116449	136116707	+	3.87566	NA	promoter-TSS (NM_011293)	promoter-TSS (NM_011293)	-113	NM_011293	20022	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding
diff_RLAGL_Vector_cond1_3753	chr15	88819344	88819548	+	3.87536	NA	promoter-TSS (NM_001142357)	promoter-TSS (NM_001142357)	-128	NM_145477	223774	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding
diff_RLAGL_Vector_cond1_4354	chr17	28485826	28486059	+	3.87447	NA	intron (NM_010220, intron 1 of 10)	CpG	207	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding
diff_RLAGL_Vector_cond1_7119	chr4	89486157	89486368	+	3.87399	NA	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-175230	NM_007670	12579	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding
diff_RLAGL_Vector_cond1_7087	chr4	82859289	82859587	+	3.87254	NA	intron (NM_026647, intron 1 of 8)	CpG	223	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding
diff_RLAGL_Vector_cond1_2312	chr12	73907575	73907956	+	3.87217	NA	promoter-TSS (NM_010431)	promoter-TSS (NM_010431)	-102	NM_010431	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding
diff_RLAGL_Vector_cond1_9678	chr8	84656860	84657101	+	3.87156	NA	Intergenic	CpG	5872	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding
diff_RLAGL_Vector_cond1_4678	chr17	88597096	88597322	+	3.86881	NA	Intergenic	Intergenic	-29346	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding
diff_RLAGL_Vector_cond1_6134	chr3	3525978	3526352	+	3.86708	NA	intron (NM_013920, intron 1 of 9)	intron (NM_013920, intron 1 of 9)	18135	NM_013920	30942	Mm.330897	NM_013920		Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding
diff_RLAGL_Vector_cond1_9147	chr7	100590891	100591210	+	3.86680	NA	intron (NR_003559, intron 1 of 7)	intron (NR_003559, intron 1 of 7)	-7920	NM_198831	52443	Mm.473730	NM_198831		Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e	mitochondrial ribosomal protein L48	protein-coding
diff_RLAGL_Vector_cond1_8089	chr5	145204013	145204396	+	3.86643	NA	promoter-TSS (NM_001167944)	promoter-TSS (NM_001167944)	-355	NM_016683	22757	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding
diff_RLAGL_Vector_cond1_9047	chr7	70624165	70624435	+	3.86641	NA	Intergenic	Intergenic	-257554	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding
diff_RLAGL_Vector_cond1_8363	chr6	61246586	61246938	+	3.86639	NA	intron (NM_183310, intron 1 of 10)	intron (NM_183310, intron 1 of 10)	-65952	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA
diff_RLAGL_Vector_cond1_8920	chr7	38217812	38218022	+	3.86565	NA	Intergenic	Intergenic	10077	NM_024413	72287	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding
diff_RLAGL_Vector_cond1_9188	chr7	110894292	110894522	+	3.86462	NA	intron (NM_194464, intron 15 of 20)	intron (NM_194464, intron 15 of 20)	-10578	NR_045267	100504184	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	OTTMUSG00000033852	predicted gene 16336	ncRNA
diff_RLAGL_Vector_cond1_3313	chr14	103098903	103099148	+	3.86399	NA	intron (NM_015822, intron 1 of 4)	CpG	484	NM_015822	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding
diff_RLAGL_Vector_cond1_6257	chr3	37723278	37723518	+	3.86396	NA	intron (NM_198657, intron 1 of 2)	intron (NM_198657, intron 1 of 2)	962	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding
diff_RLAGL_Vector_cond1_4924	chr18	65924701	65925086	+	3.86285	NA	Intergenic	Intergenic	14196	NM_013833	19434	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding
diff_RLAGL_Vector_cond1_6739	chr3	153784036	153784516	+	3.86250	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	7811	NR_045801	70594	Mm.491050	NR_045801	ENSMUSG00000062046	5730460C07Rik	-	RIKEN cDNA 5730460C07 gene	ncRNA
diff_RLAGL_Vector_cond1_5990	chr2	160349670	160349892	+	3.86142	NA	Intergenic	Intergenic	17284	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding
diff_RLAGL_Vector_cond1_4125	chr16	77013268	77013569	+	3.86071	NA	promoter-TSS (NM_013918)	promoter-TSS (NM_013918)	-651	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding
diff_RLAGL_Vector_cond1_1274	chr10	98914671	98915044	+	3.86070	NA	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-295	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding
diff_RLAGL_Vector_cond1_8537	chr6	108442415	108442627	+	3.86025	NA	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-47222	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA
diff_RLAGL_Vector_cond1_5134	chr19	29325197	29325529	+	3.85920	NA	promoter-TSS (NM_013754)	promoter-TSS (NM_013754)	-45	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding
diff_RLAGL_Vector_cond1_1267	chr10	95940741	95941284	+	3.85836	NA	intron (NM_001001932, intron 1 of 28)	CpG	349	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding
diff_RLAGL_Vector_cond1_807	chr1	191883741	191883952	+	3.85801	NA	Intergenic	Intergenic	-22935	NM_009579	22782	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding
diff_RLAGL_Vector_cond1_892	chr10	13446938	13447155	+	3.85799	NA	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	27350	NM_001195065	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding
diff_RLAGL_Vector_cond1_1695	chr11	62281568	62281775	+	3.85722	NA	promoter-TSS (NM_027198)	promoter-TSS (NM_027198)	198	NM_029704	72795	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding
diff_RLAGL_Vector_cond1_8397	chr6	71543708	71544062	+	3.85624	NA	promoter-TSS (NM_025783)	promoter-TSS (NM_025783)	31	NM_025783	66700	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding
diff_RLAGL_Vector_cond1_7259	chr4	120951631	120951923	+	3.85595	NA	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-76	NM_001005788	381549	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding
diff_RLAGL_Vector_cond1_8887	chr7	28467314	28467609	+	3.85594	NA	TTS (NM_001141921)	TTS (NM_001141921)	15223	NM_001141921	80749	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_8235	chr6	28421660	28421886	+	3.85545	NA	promoter-TSS (NM_028900)	promoter-TSS (NM_028900)	-49	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding
diff_RLAGL_Vector_cond1_10616	chrX	167233254	167233533	+	3.85475	NA	Intergenic	Intergenic	-24175	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding
diff_RLAGL_Vector_cond1_1967	chr11	116078277	116078493	+	3.85447	NA	promoter-TSS (NM_001009573)	promoter-TSS (NM_001009573)	-424	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_10128	chr9	64702968	64703236	+	3.85439	NA	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	34654	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_9851	chr8	124949260	124949465	+	3.85426	NA	promoter-TSS (NM_053207)	promoter-TSS (NM_053207)	-108	NM_053207	112405	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding
diff_RLAGL_Vector_cond1_8137	chr6	4601002	4601208	+	3.85423	NA	promoter-TSS (NM_145398)	promoter-TSS (NM_145398)	39	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1	CAS1 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_5221	chr19	56874244	56874586	+	3.85365	NA	promoter-TSS (NM_172840)	promoter-TSS (NM_172840)	-1	NM_172840	240675	Mm.129534	NM_172840	ENSMUSG00000025082	Vwa2	Amaco	von Willebrand factor A domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_7764	chr5	67608065	67608436	+	3.85350	NA	5' UTR (NM_001033415, exon 1 of 2)	5' UTR (NM_001033415, exon 1 of 2)	367	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding
diff_RLAGL_Vector_cond1_4786	chr18	23754356	23754886	+	3.85209	NA	intron (NM_001162941, intron 1 of 7)	intron (NM_001162941, intron 1 of 7)	896	NM_001162941	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding
diff_RLAGL_Vector_cond1_757	chr1	184358043	184358310	+	3.85172	NA	Intergenic	Intergenic	199515	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA
diff_RLAGL_Vector_cond1_2673	chr13	52024521	52024935	+	3.85159	NA	Intergenic	Intergenic	-72013	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA
diff_RLAGL_Vector_cond1_4357	chr17	29166015	29166356	+	3.84995	NA	intron (NM_153166, intron 14 of 20)	intron (NM_153166, intron 14 of 20)	31129	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding
diff_RLAGL_Vector_cond1_2930	chr13	111194043	111194259	+	3.84962	NA	Intergenic	Intergenic	35280	NR_045908	73129	Mm.417826	NR_045908		3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA
diff_RLAGL_Vector_cond1_8194	chr6	17704122	17704381	+	3.84943	NA	intron (NM_001289625, intron 1 of 15)	ORR1A2-int|LTR|ERVL-MaLR	10257	NM_001289625	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding
diff_RLAGL_Vector_cond1_5746	chr2	121289330	121289620	+	3.84912	NA	promoter-TSS (NM_032393)	promoter-TSS (NM_032393)	-127	NM_032393	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding
diff_RLAGL_Vector_cond1_8275	chr6	39242930	39243140	+	3.84800	NA	Intergenic	Intergenic	-36262	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding
diff_RLAGL_Vector_cond1_6477	chr3	98382440	98382744	+	3.84748	NA	intron (NM_172863, intron 1 of 2)	CpG	111	NM_172863	242109	Mm.358911	NM_172863	ENSMUSG00000050064	Zfp697	9430053K19|AI467503|Znf697	zinc finger protein 697	protein-coding
diff_RLAGL_Vector_cond1_4229	chr17	3245348	3245567	+	3.84747	NA	Intergenic	Intergenic	-81116	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
diff_RLAGL_Vector_cond1_10251	chr9	100470925	100471220	+	3.84742	NA	intron (NM_001033543, intron 3 of 6)	intron (NM_001033543, intron 3 of 6)	15401	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding
diff_RLAGL_Vector_cond1_9409	chr8	20818005	20818253	+	3.84515	NA	Intergenic	Intergenic	-58370	NR_002880	654455	Mm.424927	NR_002880		Gm21944	Defb48-ps	defensin beta 48 pseudogene	pseudo
diff_RLAGL_Vector_cond1_884	chr10	11350237	11350608	+	3.84483	NA	intron (NM_010146, intron 1 of 3)	intron (NM_010146, intron 1 of 3)	6977	NM_010146	13853	Mm.89946	NM_010146		Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding
diff_RLAGL_Vector_cond1_7302	chr4	128949687	128949915	+	3.84341	NA	intron (NM_172875, intron 5 of 10)	intron (NM_172875, intron 5 of 10)	12654	NM_001301841	242669	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding
diff_RLAGL_Vector_cond1_8309	chr6	49263989	49264210	+	3.84320	NA	promoter-TSS (NM_198102)	promoter-TSS (NM_198102)	-47	NM_198102	101214	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8122	chr5	150706696	150706917	+	3.84313	NA	intron (NM_175310, intron 1 of 34)	MERVL-int|LTR|ERVL	32979	NM_175310	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|mKIAA0979	PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_1364	chr10	117644421	117644631	+	3.84311	NA	intron (NM_027468, intron 2 of 8)	L1M5|LINE|L1	15026	NM_027468	70574	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding
diff_RLAGL_Vector_cond1_7103	chr4	86686047	86686306	+	3.84258	NA	Intergenic	ID_B1|SINE|B4	-16117	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding
diff_RLAGL_Vector_cond1_5252	chr2	5714733	5714986	+	3.84257	NA	promoter-TSS (NM_001290374)	promoter-TSS (NM_001290374)	-97	NM_001290375	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding
diff_RLAGL_Vector_cond1_2918	chr13	108368937	108369145	+	3.83973	NA	intron (NM_178683, intron 6 of 10)	intron (NM_178683, intron 6 of 10)	52704	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding
diff_RLAGL_Vector_cond1_3985	chr16	44172882	44173177	+	3.83921	NA	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-368	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Gm608	5530400K22Rik|Gm1779|mKIAA2018	predicted gene 608	protein-coding
diff_RLAGL_Vector_cond1_4320	chr17	23543277	23543532	+	3.83894	NA	Intergenic	RMER20A|LTR|ERVK	-7395	NR_126485	320020	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA
diff_RLAGL_Vector_cond1_9752	chr8	106308435	106308761	+	3.83787	NA	intron (NM_021491, intron 1 of 8)	intron (NM_021491, intron 1 of 8)	26369	NR_126091	75044	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA
diff_RLAGL_Vector_cond1_2939	chr13	113786968	113787348	+	3.83778	NA	Intergenic	Intergenic	-7350	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding
diff_RLAGL_Vector_cond1_1324	chr10	109299781	109300045	+	3.83693	NA	Intergenic	Intergenic	-288938	NM_001252341	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding
diff_RLAGL_Vector_cond1_1777	chr11	80080812	80081055	+	3.83624	NA	promoter-TSS (NM_001277106)	promoter-TSS (NM_001277106)	58	NM_001277106	54394	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding
diff_RLAGL_Vector_cond1_9145	chr7	99825241	99825506	+	3.83566	NA	intron (NM_016720, intron 1 of 2)	intron (NM_016720, intron 1 of 2)	3044	NM_016720	50877	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding
diff_RLAGL_Vector_cond1_4400	chr17	35556808	35557031	+	3.83526	NA	3' UTR (NM_001008424, exon 2 of 2)	3' UTR (NM_001008424, exon 2 of 2)	4791	NM_001008424	386463	Mm.426664	NM_001008424	ENSMUSG00000039518	Cdsn	AI747712	corneodesmosin	protein-coding
diff_RLAGL_Vector_cond1_2154	chr12	31294484	31294685	+	3.83492	NA	intron (NM_008482, intron 12 of 32)	intron (NM_008482, intron 12 of 32)	29290	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding
diff_RLAGL_Vector_cond1_5110	chr19	21037561	21037793	+	3.83465	NA	Intergenic	Intergenic	-67033	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA
diff_RLAGL_Vector_cond1_5786	chr2	131210006	131210339	+	3.83431	NA	promoter-TSS (NM_027129)	promoter-TSS (NM_027129)	-188	NM_027129	69596	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding
diff_RLAGL_Vector_cond1_1796	chr11	85311045	85311278	+	3.83419	NA	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-93	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding
diff_RLAGL_Vector_cond1_451	chr1	120140228	120140492	+	3.83374	NA	intron (NM_001172074, intron 1 of 4)	Tigger17c|DNA|TcMar-Tigger	19173	NM_001172074	73103	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding
diff_RLAGL_Vector_cond1_3192	chr14	68323039	68323357	+	3.83367	NA	Intergenic	Intergenic	-198194	NM_008691	18040	Mm.242832	NM_008691	ENSMUSG00000022054	Nefm	NF-M|NF160|NF165|Nef3|Nfm	neurofilament, medium polypeptide	protein-coding
diff_RLAGL_Vector_cond1_2430	chr12	108235282	108235497	+	3.83361	NA	intron (NM_001159910, intron 1 of 5)	intron (NM_001159910, intron 1 of 5)	40028	NM_001159910	668158	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010	coiled-coil domain containing 85C	protein-coding
diff_RLAGL_Vector_cond1_3587	chr15	52751859	52752068	+	3.83273	NA	Intergenic	RLTR49|LTR|ERVK	39518	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
diff_RLAGL_Vector_cond1_5624	chr2	91256670	91256890	+	3.83217	NA	promoter-TSS (NM_028733)	promoter-TSS (NM_028733)	-33	NM_030880	80708	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding
diff_RLAGL_Vector_cond1_9778	chr8	111732131	111732336	+	3.83113	NA	promoter-TSS (NM_001198839)	promoter-TSS (NM_001198839)	-97	NM_001198839	12927	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding
diff_RLAGL_Vector_cond1_2335	chr12	84175607	84175855	+	3.82911	NA	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	18284	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_10276	chr9	106438272	106438568	+	3.82907	NA	promoter-TSS (NM_025371)	promoter-TSS (NM_025371)	-184	NM_025371	109652	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding
diff_RLAGL_Vector_cond1_7617	chr5	32410007	32410211	+	3.82883	NA	Intergenic	Intergenic	-48861	NM_172707	19046	Mm.241931	NM_172707		Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding
diff_RLAGL_Vector_cond1_1439	chr10	128409749	128410056	+	3.82849	NA	promoter-TSS (NM_027257)	promoter-TSS (NM_027257)	-106	NM_027257	69917	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b	nucleic acid binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_4513	chr17	56897704	56897911	+	3.82800	NA	intron (NM_022328, intron 6 of 11)	intron (NM_022328, intron 6 of 11)	22174	NM_030141	78625	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding
diff_RLAGL_Vector_cond1_6136	chr3	3618743	3619100	+	3.82665	NA	intron (NM_013920, intron 1 of 9)	AT_rich|Low_complexity|Low_complexity	110891	NM_013920	30942	Mm.330897	NM_013920		Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding
diff_RLAGL_Vector_cond1_6358	chr3	64901398	64901760	+	3.82643	NA	Intergenic	Intergenic	-56836	NR_003962	319210	Mm.246646	NM_175670	ENSMUSG00000097538	Vmn2r-ps11	4930518C23Rik	vomeronasal 2, receptor, pseudogene 11	pseudo
diff_RLAGL_Vector_cond1_10583	chrX	153492261	153492580	+	3.82604	NA	Intergenic	MER102a|DNA|hAT-Charlie	-5812	NM_018798	54609	Mm.430772	NM_018798	ENSMUSG00000050148	Ubqln2	Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2	ubiquilin 2	protein-coding
diff_RLAGL_Vector_cond1_5963	chr2	155641671	155642072	+	3.82562	NA	intron (NM_019828, intron 11 of 18)	intron (NM_019828, intron 11 of 18)	18991	NR_030757	735275		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA
diff_RLAGL_Vector_cond1_7746	chr5	63812354	63812603	+	3.82495	NA	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-17	NM_029554	76261	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding
diff_RLAGL_Vector_cond1_1423	chr10	127266121	127266327	+	3.82448	NA	promoter-TSS (NM_001190453)	promoter-TSS (NM_001190453)	-38	NM_027151	69654	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding
diff_RLAGL_Vector_cond1_7267	chr4	123139954	123140155	+	3.82385	NA	promoter-TSS (NM_019489)	promoter-TSS (NM_019489)	-113	NM_019489	56031	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding
diff_RLAGL_Vector_cond1_8956	chr7	45017272	45017867	+	3.82334	NA	promoter-TSS (NM_009101)	promoter-TSS (NM_009101)	-438	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	Harvey rat sarcoma oncogene, subgroup R	protein-coding
diff_RLAGL_Vector_cond1_4443	chr17	46267993	46268195	+	3.82002	NA	intron (NM_001252475, intron 1 of 8)	intron (NM_001252475, intron 1 of 8)	13929	NM_001111142	224813	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding
diff_RLAGL_Vector_cond1_1486	chr11	8582193	8582445	+	3.81963	NA	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	82216	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding
diff_RLAGL_Vector_cond1_4813	chr18	35045459	35045719	+	3.81818	NA	Intergenic	Intergenic	-73323	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding
diff_RLAGL_Vector_cond1_9876	chr9	3335402	3335856	+	3.81813	NA	intron (NM_026303, intron 1 of 11)	intron (NM_026303, intron 1 of 11)	398	NM_026303	67667	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB, alkylation repair homolog 8 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_9952	chr9	21225049	21225362	+	3.81766	NA	intron (NR_106127, intron 1 of 3)	intron (NR_106127, intron 1 of 3)	1076	NR_106127	102465769		NR_106127	ENSMUSG00000098764	Mir7667	Gm27756|mmu-mir-7667	microRNA 7667	ncRNA
diff_RLAGL_Vector_cond1_10270	chr9	105053225	105053576	+	3.81754	NA	5' UTR (NM_053159, exon 1 of 10)	5' UTR (NM_053159, exon 1 of 10)	132	NM_053159	94062	Mm.29746	NM_053159		Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding
diff_RLAGL_Vector_cond1_8850	chr7	19007612	19007833	+	3.81752	NA	TTS (NM_178757)	TTS (NM_178757)	3657	NM_178757	272359	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_7049	chr4	72233987	72234262	+	3.81717	NA	Intergenic	Intergenic	32880	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA
diff_RLAGL_Vector_cond1_9515	chr8	46551660	46552113	+	3.81708	NA	promoter-TSS (NM_027973)	promoter-TSS (NM_027973)	-183	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding
diff_RLAGL_Vector_cond1_3228	chr14	77904162	77904395	+	3.81694	NA	promoter-TSS (NM_029495)	promoter-TSS (NM_029495)	39	NM_029495	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding
diff_RLAGL_Vector_cond1_9792	chr8	114897365	114897621	+	3.81693	NA	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	457841	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding
diff_RLAGL_Vector_cond1_5721	chr2	115449908	115450159	+	3.81673	NA	Intergenic	Intergenic	62168	NR_030712	100043232	Mm.240112	NR_030712	ENSMUSG00000085582	3110099E03Rik	-	RIKEN cDNA 3110099E03 gene	ncRNA
diff_RLAGL_Vector_cond1_3858	chr16	10675806	10676125	+	3.81647	NA	intron (NM_001204229, intron 18 of 22)	intron (NM_001204229, intron 18 of 22)	109571	NM_001271603	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding
diff_RLAGL_Vector_cond1_1258	chr10	94065724	94065959	+	3.81267	NA	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	29840	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_8644	chr6	128318267	128318527	+	3.81254	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-17584	NM_001080979	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding
diff_RLAGL_Vector_cond1_6211	chr3	21678279	21678500	+	3.81135	NA	Intergenic	Intergenic	-398263	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_6519	chr3	106492861	106493078	+	3.81080	NA	intron (NM_001278941, intron 8 of 12)	L2a|LINE|L2	6929	NM_028110	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding
diff_RLAGL_Vector_cond1_3983	chr16	44033490	44033760	+	3.81079	NA	Intergenic	Intergenic	-5680	NM_001172107	207798	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding
diff_RLAGL_Vector_cond1_9843	chr8	122775430	122775713	+	3.81026	NA	promoter-TSS (NM_144932)	promoter-TSS (NM_144932)	66	NM_144932	257633	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding
diff_RLAGL_Vector_cond1_5829	chr2	137116894	137117287	+	3.81002	NA	promoter-TSS (NM_013822)	promoter-TSS (NM_013822)	-570	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding
diff_RLAGL_Vector_cond1_6258	chr3	37729249	37729473	+	3.80980	NA	Intergenic	Intergenic	-5001	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding
diff_RLAGL_Vector_cond1_5390	chr2	32083389	32083633	+	3.80883	NA	5' UTR (NM_175511, exon 1 of 2)	5' UTR (NM_175511, exon 1 of 2)	194	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding
diff_RLAGL_Vector_cond1_8826	chr7	13023204	13023446	+	3.80838	NA	promoter-TSS (NM_011588)	promoter-TSS (NM_011588)	-827	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding
diff_RLAGL_Vector_cond1_1824	chr11	90274283	90274495	+	3.80746	NA	intron (NM_026178, intron 6 of 6)	RMER17C|LTR|ERVK	24913	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding
diff_RLAGL_Vector_cond1_1912	chr11	104590194	104590436	+	3.80714	NA	Intergenic	Intergenic	-17685	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding
diff_RLAGL_Vector_cond1_7795	chr5	74792295	74792542	+	3.80609	NA	Intergenic	Intergenic	-89515	NM_001159577	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding
diff_RLAGL_Vector_cond1_7271	chr4	123422844	123423227	+	3.80607	NA	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-11124	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding
diff_RLAGL_Vector_cond1_9003	chr7	60122934	60123242	+	3.80605	NA	intron (NM_001082962, intron 2 of 10)	intron (NM_001082962, intron 2 of 10)	17131	NM_001082962	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding
diff_RLAGL_Vector_cond1_8828	chr7	13054698	13055019	+	3.80595	NA	promoter-TSS (NM_001290453)	promoter-TSS (NM_001290453)	-94	NM_001290453	109889	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding
diff_RLAGL_Vector_cond1_8201	chr6	18303266	18303644	+	3.80484	NA	intron (NM_021050, intron 22 of 26)	intron (NM_021050, intron 22 of 26)	132768	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding
diff_RLAGL_Vector_cond1_6147	chr3	8667383	8667683	+	3.80370	NA	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-495	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding
diff_RLAGL_Vector_cond1_6222	chr3	24921398	24921664	+	3.80220	NA	Intergenic	Intergenic	1231776	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
diff_RLAGL_Vector_cond1_10286	chr9	107887884	107888121	+	3.80215	NA	promoter-TSS (NM_028369)	promoter-TSS (NM_028369)	-127	NM_028369	72825	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A (yeast)	protein-coding
diff_RLAGL_Vector_cond1_1811	chr11	87683034	87683272	+	3.80156	NA	intron (NM_172448, intron 2 of 9)	intron (NM_172448, intron 2 of 9)	-16371	NR_045139	68690	Mm.342009	NR_045139		1110028F11Rik	-	RIKEN cDNA 1110028F11 gene	ncRNA
diff_RLAGL_Vector_cond1_1795	chr11	84738989	84739235	+	3.80130	NA	Intergenic	Intergenic	-18680	NR_046197	78471	Mm.47152	NR_046197	ENSMUSG00000085044	1700109G15Rik	-	RIKEN cDNA 1700109G15 gene	ncRNA
diff_RLAGL_Vector_cond1_7118	chr4	89310931	89311230	+	3.80092	NA	promoter-TSS (NM_007670)	promoter-TSS (NM_007670)	-48	NM_007670	12579	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding
diff_RLAGL_Vector_cond1_6122	chr2	180032853	180033184	+	3.80088	NA	intron (NM_177727, intron 7 of 8)	intron (NM_177727, intron 7 of 8)	8031	NM_177727	241846	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM14 homolog B (SCD6, S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_9601	chr8	70152618	70152866	+	3.80066	NA	promoter-TSS (NM_001045484)	promoter-TSS (NM_001045484)	-19	NM_001045484	17259	Mm.432505	NM_008578	ENSMUSG00000002345	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding
diff_RLAGL_Vector_cond1_9321	chr7	143122189	143122457	+	3.80056	NA	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	15069	NM_008434	16535	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding
diff_RLAGL_Vector_cond1_3430	chr15	6625768	6625981	+	3.79884	NA	intron (NM_001278269, intron 2 of 16)	intron (NM_001278269, intron 2 of 16)	46027	NM_001278269	23880	Mm.170905	NM_011815		Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding
diff_RLAGL_Vector_cond1_2531	chr13	6469438	6469637	+	3.79832	NA	Intergenic	Intergenic	-78620	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding
diff_RLAGL_Vector_cond1_6630	chr3	134221047	134221279	+	3.79775	NA	Intergenic	Intergenic	-15332	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding
diff_RLAGL_Vector_cond1_8621	chr6	125410926	125411337	+	3.79544	NA	Intergenic	Intergenic	-30627	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding
diff_RLAGL_Vector_cond1_81	chr1	21218545	21218844	+	3.79412	NA	5' UTR (NM_029398, exon 1 of 5)	5' UTR (NM_029398, exon 1 of 5)	119	NM_029398	75712	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding
diff_RLAGL_Vector_cond1_10184	chr9	83293464	83293666	+	3.79400	NA	Intergenic	Intergenic	-137982	NR_102437	100039186	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA
diff_RLAGL_Vector_cond1_5109	chr19	20601807	20602036	+	3.79254	NA	promoter-TSS (NM_013467)	promoter-TSS (NM_013467)	-61	NM_013467	11668	Mm.250866	NM_013467	ENSMUSG00000053279	Aldh1a1	Ahd-2|Ahd2|Aldh1|Aldh1a2|E1|Raldh1	aldehyde dehydrogenase family 1, subfamily A1	protein-coding
diff_RLAGL_Vector_cond1_10468	chrX	77795699	77795909	+	3.79254	NA	5' UTR (NM_016979, exon 1 of 9)	5' UTR (NM_016979, exon 1 of 9)	156	NM_016979	19108	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding
diff_RLAGL_Vector_cond1_7358	chr4	136053123	136053322	+	3.79241	NA	intron (NM_025919, intron 1 of 5)	CpG	149	NM_025919	67025	Mm.276856	NM_025919		Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding
diff_RLAGL_Vector_cond1_9880	chr9	3533045	3533283	+	3.79238	NA	intron (NM_001033322, intron 1 of 7)	intron (NM_001033322, intron 1 of 7)	815	NM_001033322	234889	Mm.91240	NM_001033322		Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding
diff_RLAGL_Vector_cond1_4655	chr17	86038262	86038628	+	3.79111	NA	intron (NM_030133, intron 16 of 20)	intron (NM_030133, intron 16 of 20)	106730	NM_030133	78586	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding
diff_RLAGL_Vector_cond1_1222	chr10	86778845	86779140	+	3.79106	NA	promoter-TSS (NM_175331)	promoter-TSS (NM_175331)	-13	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_460	chr1	121581240	121581607	+	3.79078	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-13443	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding
diff_RLAGL_Vector_cond1_2683	chr13	54425311	54425527	+	3.79007	NA	Intergenic	Intergenic	43421	NM_028597	73666	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding
diff_RLAGL_Vector_cond1_10544	chrX	133688991	133689204	+	3.78983	NA	promoter-TSS (NM_001105246)	promoter-TSS (NM_001105246)	-104	NM_001105246	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding
diff_RLAGL_Vector_cond1_3027	chr14	19140272	19140515	+	3.78972	NA	Intergenic	Intergenic	-246766	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding
diff_RLAGL_Vector_cond1_2480	chr12	116590973	116591195	+	3.78915	NA	intron (NM_011215, intron 2 of 22)	intron (NM_011215, intron 2 of 22)	105364	NM_011215	19276	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding
diff_RLAGL_Vector_cond1_7218	chr4	113263997	113264237	+	3.78841	NA	intron (NM_001103199, intron 2 of 48)	RLTR1D|LTR|ERV1	22856	NM_001103199	230622	Mm.291107	NM_001103199	ENSMUSG00000087194	Skint6	OTTMUSG00000008519	selection and upkeep of intraepithelial T cells 6	protein-coding
diff_RLAGL_Vector_cond1_9116	chr7	89719974	89720357	+	3.78817	NA	intron (NM_181407, intron 1 of 13)	MTD|LTR|ERVL-MaLR	87347	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_9470	chr8	36137179	36137450	+	3.78809	NA	intron (NM_172911, intron 4 of 5)	intron (NM_172911, intron 4 of 5)	42486	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	D8Ertd82e	9830148H23|NACK|Sgk223|mFLJ00269	DNA segment, Chr 8, ERATO Doi 82, expressed	protein-coding
diff_RLAGL_Vector_cond1_9375	chr8	11008978	11009213	+	3.78804	NA	promoter-TSS (NM_001081212)	promoter-TSS (NM_001081212)	-665	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding
diff_RLAGL_Vector_cond1_969	chr10	31609124	31609419	+	3.78794	NA	5' UTR (NM_001146349, exon 1 of 6)	5' UTR (NM_001146349, exon 1 of 6)	454	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
diff_RLAGL_Vector_cond1_5895	chr2	146577325	146577636	+	3.78791	NA	Intergenic	Intergenic	34549	NR_040502	74065	Mm.399508	NR_040502	ENSMUSG00000085796	4933406D12Rik	-	RIKEN cDNA 4933406D12 gene	ncRNA
diff_RLAGL_Vector_cond1_1968	chr11	116086858	116087086	+	3.78736	NA	promoter-TSS (NM_016852)	promoter-TSS (NM_016852)	-8	NM_016852	22378	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_10078	chr9	50768346	50768629	+	3.78685	NA	promoter-TSS (NM_023483)	promoter-TSS (NM_023483)	249	NM_198675	382137	Mm.390169	NM_198675		Fdxacb1	D630004A14Rik	ferredoxin-fold anticodon binding domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_5566	chr2	76969031	76969240	+	3.78648	NA	intron (NM_028004, intron 8 of 191)	intron (NM_028004, intron 8 of 191)	13412	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding
diff_RLAGL_Vector_cond1_7917	chr5	110808307	110808579	+	3.78633	NA	intron (NM_009469, intron 3 of 27)	intron (NM_009469, intron 3 of 27)	1638	NM_009469	22241	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding
diff_RLAGL_Vector_cond1_758	chr1	184400126	184400331	+	3.78553	NA	Intergenic	Intergenic	157463	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA
diff_RLAGL_Vector_cond1_8484	chr6	92092220	92092427	+	3.78485	NA	intron (NM_011630, intron 1 of 14)	CpG	905	NM_011630	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding
diff_RLAGL_Vector_cond1_3187	chr14	67188679	67189013	+	3.78431	NA	Intergenic	Intergenic	-44446	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding
diff_RLAGL_Vector_cond1_1166	chr10	80475278	80475503	+	3.78253	NA	Intergenic	CpG	-19516	NM_139226	246086	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding
diff_RLAGL_Vector_cond1_983	chr10	34033957	34034156	+	3.78252	NA	Intergenic	Intergenic	-3541	NM_001162937	692132	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l|ENSMUSG00000071340	trafficking protein particle complex 3 like	protein-coding
diff_RLAGL_Vector_cond1_4901	chr18	58589682	58589939	+	3.78172	NA	intron (NM_001081072, intron 4 of 9)	intron (NM_001081072, intron 4 of 9)	33570	NM_001081072	225579	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding
diff_RLAGL_Vector_cond1_9410	chr8	21756791	21757203	+	3.78023	NA	Intergenic	Intergenic	-19558	NM_007843	13214	Mm.431316	NM_007843	ENSMUSG00000044748	Defb1	AW260221|BD-1	defensin beta 1	protein-coding
diff_RLAGL_Vector_cond1_8676	chr6	134111714	134111984	+	3.78008	NA	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	76149	NM_001303102	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding
diff_RLAGL_Vector_cond1_5161	chr19	41829841	41830113	+	3.77869	NA	promoter-TSS (NM_008043)	promoter-TSS (NM_008043)	7	NM_008043	14296	Mm.4573	NM_008043		Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding
diff_RLAGL_Vector_cond1_3886	chr16	18195093	18195436	+	3.77851	NA	Intergenic	Intergenic	18269	NR_027843	66779	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA
diff_RLAGL_Vector_cond1_2589	chr13	23533663	23533929	+	3.77711	NA	promoter-TSS (NM_175661)	promoter-TSS (NM_175661)	-115	NM_175661	319173	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding
diff_RLAGL_Vector_cond1_7678	chr5	43948081	43948287	+	3.77711	NA	Intergenic	Intergenic	33615	NM_008009	14181	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_5772	chr2	126961709	126961999	+	3.77600	NA	Intergenic	Intergenic	-28619	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding
diff_RLAGL_Vector_cond1_1155	chr10	79823080	79823307	+	3.77416	NA	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	2172	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding
diff_RLAGL_Vector_cond1_2686	chr13	54621569	54621786	+	3.77349	NA	promoter-TSS (NM_178397)	promoter-TSS (NM_178397)	-107	NM_178397	76577	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding
diff_RLAGL_Vector_cond1_1221	chr10	86778421	86778644	+	3.77239	NA	promoter-TSS (NM_175331)	promoter-TSS (NM_175331)	-473	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_9459	chr8	35376483	35376804	+	3.77071	NA	intron (NM_177741, intron 1 of 1)	CpG	902	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding
diff_RLAGL_Vector_cond1_3083	chr14	34503112	34503402	+	3.77035	NA	promoter-TSS (NM_009758)	promoter-TSS (NM_009758)	-711	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding
diff_RLAGL_Vector_cond1_6688	chr3	146220848	146221087	+	3.76844	NA	promoter-TSS (NM_022983)	promoter-TSS (NM_022983)	6	NM_022983	65086	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding
diff_RLAGL_Vector_cond1_2633	chr13	34874412	34874637	+	3.76777	NA	promoter-TSS (NM_013830)	promoter-TSS (NM_013830)	-970	NM_013830	19134	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	PRP4 pre-mRNA processing factor 4 homolog B (yeast)	protein-coding
diff_RLAGL_Vector_cond1_9500	chr8	44156015	44156255	+	3.76751	NA	Intergenic	Intergenic	-456644	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding
diff_RLAGL_Vector_cond1_1703	chr11	63922216	63922462	+	3.76696	NA	promoter-TSS (NM_018805)	promoter-TSS (NM_018805)	-55	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding
diff_RLAGL_Vector_cond1_5666	chr2	103477571	103477779	+	3.76618	NA	intron (NM_009804, intron 1 of 12)	intron (NM_009804, intron 1 of 12)	7478	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding
diff_RLAGL_Vector_cond1_10349	chr9	120002081	120002421	+	3.76559	NA	Intergenic	Intergenic	-17593	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding
diff_RLAGL_Vector_cond1_5811	chr2	135029366	135029576	+	3.76555	NA	intron (NM_019677, intron 3 of 32)	intron (NM_019677, intron 3 of 32)	186145	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA
diff_RLAGL_Vector_cond1_8396	chr6	71493731	71493951	+	3.76525	NA	promoter-TSS (NM_001308303)	promoter-TSS (NM_001308303)	-36	NM_009543	22644	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding
diff_RLAGL_Vector_cond1_4665	chr17	87531707	87531917	+	3.76510	NA	Intergenic	Intergenic	-84877	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding
diff_RLAGL_Vector_cond1_9364	chr8	8602649	8602920	+	3.76487	NA	Intergenic	Intergenic	57989	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
diff_RLAGL_Vector_cond1_5878	chr2	144165145	144165391	+	3.76467	NA	Intergenic	Intergenic	24022	NM_001033778	433481	Mm.330630	NM_001033778		Gm5535	EG433481	predicted gene 5535	protein-coding
diff_RLAGL_Vector_cond1_3707	chr15	76816850	76817131	+	3.76419	NA	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	1180	NM_001168288	223666	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding
diff_RLAGL_Vector_cond1_3122	chr14	49348933	49349147	+	3.76390	NA	intron (NM_029238, intron 1 of 7)	intron (NM_029238, intron 1 of 7)	-103612	NM_025956	67082	Mm.87439	NM_025956	ENSMUSG00000021850	1700011H14Rik	-	RIKEN cDNA 1700011H14 gene	protein-coding
diff_RLAGL_Vector_cond1_3146	chr14	55795608	55795943	+	3.76295	NA	Intergenic	Intergenic	-6918	NM_001164108	56532	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding
diff_RLAGL_Vector_cond1_1843	chr11	95336705	95336936	+	3.76254	NA	promoter-TSS (NM_172543)	promoter-TSS (NM_172543)	-198	NM_172543	215512	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding
diff_RLAGL_Vector_cond1_3401	chr14	123626917	123627160	+	3.76227	NA	5' UTR (NM_177393, exon 1 of 44)	5' UTR (NM_177393, exon 1 of 44)	106	NM_177393	338370	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding
diff_RLAGL_Vector_cond1_4932	chr18	67390532	67390769	+	3.76099	NA	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-81	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding
diff_RLAGL_Vector_cond1_2933	chr13	111941255	111941478	+	3.76094	NA	Intergenic	PB1D10|SINE|Alu	73430	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA
diff_RLAGL_Vector_cond1_1156	chr10	79927074	79927287	+	3.76083	NA	promoter-TSS (NM_001288625)	promoter-TSS (NM_001288625)	137	NM_001288626	13496	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding
diff_RLAGL_Vector_cond1_5204	chr19	53329546	53329827	+	3.76052	NA	promoter-TSS (NM_001008543)	promoter-TSS (NM_001008543)	273	NM_010847	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding
diff_RLAGL_Vector_cond1_5404	chr2	35074387	35074616	+	3.75999	NA	Intergenic	MERV1_I-int|LTR|ERV1	-13060	NM_010406	15139	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He	hemolytic complement	protein-coding
diff_RLAGL_Vector_cond1_7530	chr5	8634671	8634880	+	3.75983	NA	Intergenic	Intergenic	-11823	NM_198620	242819	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding
diff_RLAGL_Vector_cond1_9849	chr8	124663428	124663679	+	3.75927	NA	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	-184	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding
diff_RLAGL_Vector_cond1_1939	chr11	113061073	113061351	+	3.75916	NA	intron (NR_015556, intron 2 of 2)	intron (NR_015556, intron 2 of 2)	140626	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA
diff_RLAGL_Vector_cond1_8270	chr6	38144512	38144773	+	3.75864	NA	intron (NM_194061, intron 15 of 19)	(TC)n|Simple_repeat|Simple_repeat	-20056	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding
diff_RLAGL_Vector_cond1_3911	chr16	25849942	25850505	+	3.75828	NA	intron (NM_001127259, intron 4 of 13)	intron (NM_001127259, intron 4 of 13)	48307	NM_001127262	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding
diff_RLAGL_Vector_cond1_8845	chr7	18238661	18238914	+	3.75797	NA	Intergenic	Lx8|LINE|L1	-6560	NM_153749	266815	Mm.106769	NM_153749	ENSMUSG00000054005	Mill1	5530400I18Rik	MHC I like leukocyte 1	protein-coding
diff_RLAGL_Vector_cond1_3721	chr15	80639260	80639585	+	3.75783	NA	intron (NM_001289442, intron 4 of 7)	intron (NM_001289442, intron 4 of 7)	-6651	NR_105922	102466773		NR_105922	ENSMUSG00000098631	Mir6957	Gm27895|mmu-mir-6957	microRNA 6957	ncRNA
diff_RLAGL_Vector_cond1_7732	chr5	53196542	53196744	+	3.75709	NA	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	16809	NM_172710	231238	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_6112	chr2	178498565	178498840	+	3.75642	NA	Intergenic	Intergenic	68187	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding
diff_RLAGL_Vector_cond1_5060	chr19	5893956	5894248	+	3.75620	NA	promoter-TSS (NM_198634)	promoter-TSS (NM_198634)	5	NM_198634	332359	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding
diff_RLAGL_Vector_cond1_4717	chr18	4978650	4978901	+	3.75610	NA	Intergenic	Intergenic	-67814	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding
diff_RLAGL_Vector_cond1_10191	chr9	84107026	84107243	+	3.75538	NA	intron (NM_001305935, intron 9 of 10)	intron (NM_001305935, intron 9 of 10)	158353	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_6853	chr4	16240910	16241303	+	3.75494	NA	intron (NR_045765, intron 3 of 6)	intron (NR_045765, intron 3 of 6)	76996	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA
diff_RLAGL_Vector_cond1_3227	chr14	76698951	76699192	+	3.75425	NA	Intergenic	Intergenic	21503	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA
diff_RLAGL_Vector_cond1_981	chr10	33951071	33951400	+	3.75419	NA	promoter-TSS (NM_028287)	promoter-TSS (NM_028287)	-23	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding
diff_RLAGL_Vector_cond1_1532	chr11	20278878	20279215	+	3.75354	NA	Intergenic	Intergenic	-29622	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding
diff_RLAGL_Vector_cond1_4277	chr17	15657258	15657481	+	3.75343	NA	Intergenic	MTB_Mm|LTR|ERVL-MaLR	25581	NR_045431	71008	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA
diff_RLAGL_Vector_cond1_2370	chr12	91833356	91833561	+	3.75291	NA	intron (NM_011344, intron 3 of 20)	intron (NM_011344, intron 3 of 20)	15699	NM_001039089	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_10554	chrX	135819267	135819508	+	3.75246	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-19647	NM_001163017	245607	Mm.489763	NM_001163015	ENSMUSG00000072966	Gprasp2	5330440H13Rik|GASP-2|GASP2|Prpl5	G protein-coupled receptor associated sorting protein 2	protein-coding
diff_RLAGL_Vector_cond1_6347	chr3	62458515	62458724	+	3.75102	NA	intron (NM_001081295, intron 12 of 13)	intron (NM_001081295, intron 12 of 13)	48369	NM_028136	72162	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding
diff_RLAGL_Vector_cond1_4240	chr17	5893120	5893446	+	3.75056	NA	intron (NM_025664, intron 4 of 17)	intron (NM_025664, intron 4 of 17)	-47997	NM_001113352	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding
diff_RLAGL_Vector_cond1_431	chr1	118389285	118389502	+	3.74825	NA	5' UTR (NM_029709, exon 1 of 37)	5' UTR (NM_029709, exon 1 of 37)	335	NM_001293300	76707	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding
diff_RLAGL_Vector_cond1_10134	chr9	66769345	66769568	+	3.74783	NA	Intergenic	Intergenic	25967	NM_177583	208117	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	anterior pharynx defective 1b homolog (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_6007	chr2	163472573	163472812	+	3.74776	NA	promoter-TSS (NM_173397)	promoter-TSS (NM_173397)	-63	NM_173397	228859	Mm.242917	NM_173397		Fitm2	AI414861|D930001I22Rik|Fit2	fat storage-inducing transmembrane protein 2	protein-coding
diff_RLAGL_Vector_cond1_8451	chr6	87898091	87898318	+	3.74717	NA	intron (NM_017477, intron 13 of 23)	intron (NM_017477, intron 13 of 23)	10232	NM_201244	54161	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding
diff_RLAGL_Vector_cond1_3838	chr15	103146788	103147027	+	3.74717	NA	promoter-TSS (NR_045743)	promoter-TSS (NR_045743)	-79	NR_045743	432989	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA
diff_RLAGL_Vector_cond1_7472	chr4	152230422	152230675	+	3.74642	NA	intron (NM_001146057, intron 5 of 8)	IAP1-MM_LTR|LTR|ERVK	30704	NM_001146058	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding
diff_RLAGL_Vector_cond1_4907	chr18	61707587	61707833	+	3.74611	NA	promoter-TSS (NM_172832)	promoter-TSS (NM_172832)	-75	NM_172832	240334	Mm.234457	NM_172832	ENSMUSG00000024579	Pcyox1l	BC060677|C630049M13	prenylcysteine oxidase 1 like	protein-coding
diff_RLAGL_Vector_cond1_5562	chr2	76610942	76611146	+	3.74599	NA	Intergenic	Intergenic	36950	NM_011871	23992	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding
diff_RLAGL_Vector_cond1_5075	chr19	9066028	9066541	+	3.74570	NA	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	21672	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding
diff_RLAGL_Vector_cond1_267	chr1	73850753	73850999	+	3.74278	NA	intron (NR_045311, intron 6 of 8)	intron (NR_045311, intron 6 of 8)	4699	NR_105769	102465179		NR_105769	ENSMUSG00000098504	Mir6351	Gm27936|mmu-mir-6351	microRNA 6351	ncRNA
diff_RLAGL_Vector_cond1_7237	chr4	117251684	117251909	+	3.74255	NA	promoter-TSS (NM_001285815)	promoter-TSS (NM_001285815)	121	NM_001033774	381544	Mm.23504	NM_001033774	ENSMUSG00000060268	Gm1661	Gm1662|Ncrna00082	predicted gene 1661	protein-coding
diff_RLAGL_Vector_cond1_6769	chr3	157946778	157946993	+	3.74235	NA	promoter-TSS (NM_001013806)	promoter-TSS (NM_001013806)	-581	NM_001013806	433667	Mm.265806	NM_001013806		Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding
diff_RLAGL_Vector_cond1_7933	chr5	113973018	113973373	+	3.74092	NA	intron (NM_198109, intron 2 of 14)	intron (NM_198109, intron 2 of 14)	20562	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|mSSH-1L	slingshot homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6435	chr3	87919326	87919559	+	3.73930	NA	promoter-TSS (NM_026591)	promoter-TSS (NM_026591)	-102	NM_026591	67707	Mm.393802	NM_026591		Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding
diff_RLAGL_Vector_cond1_3806	chr15	99474111	99474376	+	3.73909	NA	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	487	NM_029236	75284	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding
diff_RLAGL_Vector_cond1_2872	chr13	91460408	91460621	+	3.73851	NA	promoter-TSS (NM_024272)	promoter-TSS (NM_024272)	-583	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_1365	chr10	117845551	117845783	+	3.73785	NA	intron (NM_024457, intron 1 of 7)	GC_rich|Low_complexity|Low_complexity	307	NM_024457	215449	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding
diff_RLAGL_Vector_cond1_8439	chr6	86365349	86365584	+	3.73748	NA	promoter-TSS (NM_025591)	promoter-TSS (NM_025591)	-217	NM_025591	66488	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding
diff_RLAGL_Vector_cond1_10056	chr9	44799196	44799510	+	3.73731	NA	promoter-TSS (NM_027865)	promoter-TSS (NM_027865)	-137	NM_027865	71687	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding
diff_RLAGL_Vector_cond1_9342	chr8	4474892	4475157	+	3.73680	NA	Intergenic	Tigger5b|DNA|TcMar-Tigger	-18381	NM_026058	67260	Mm.35511	NM_026058		Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding
diff_RLAGL_Vector_cond1_7376	chr4	139352469	139352682	+	3.73631	NA	promoter-TSS (NM_001039200)	promoter-TSS (NM_001039200)	1	NM_001290810	69902	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_9386	chr8	13897679	13897894	+	3.73608	NA	Intergenic	Intergenic	-7515	NM_025556	66423	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding
diff_RLAGL_Vector_cond1_5997	chr2	161177820	161178058	+	3.73575	NA	Intergenic	Intergenic	-68853	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding
diff_RLAGL_Vector_cond1_8427	chr6	83121482	83121733	+	3.73461	NA	promoter-TSS (NM_001083923)	promoter-TSS (NM_001083923)	-146	NM_001083922	22377	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_5388	chr2	31688172	31688462	+	3.73337	NA	promoter-TSS (NM_001283046)	promoter-TSS (NM_001283046)	-220	NM_001283047	11350	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding
diff_RLAGL_Vector_cond1_4340	chr17	25985743	25985960	+	3.73212	NA	Intergenic	CpG	-20346	NM_015830	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding
diff_RLAGL_Vector_cond1_8791	chr7	3330228	3330458	+	3.73147	NA	3' UTR (NM_011102, exon 18 of 18)	3' UTR (NM_011102, exon 18 of 18)	-6242	NM_133189	81904	Mm.214994	NM_133189		Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding
diff_RLAGL_Vector_cond1_2249	chr12	55353498	55353752	+	3.73063	NA	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-17070	NR_035430	100316807		NR_035430	ENSMUSG00000080645	Mir1198	Mirn1198|mmu-mir-1198	microRNA 1198	ncRNA
diff_RLAGL_Vector_cond1_10299	chr9	109875291	109875637	+	3.73028	NA	promoter-TSS (NM_007658)	promoter-TSS (NM_007658)	-115	NM_007658	12530	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding
diff_RLAGL_Vector_cond1_5969	chr2	156732185	156732483	+	3.72805	NA	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	11055	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_511	chr1	135820924	135821152	+	3.72778	NA	intron (NM_133664, intron 1 of 9)	intron (NM_133664, intron 1 of 9)	2440	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding
diff_RLAGL_Vector_cond1_9204	chr7	116504187	116504392	+	3.72645	NA	promoter-TSS (NM_001130479)	promoter-TSS (NM_001130479)	-80	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding
diff_RLAGL_Vector_cond1_859	chr10	7211239	7211515	+	3.72497	NA	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	860	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding
diff_RLAGL_Vector_cond1_4461	chr17	48266945	48267175	+	3.72457	NA	intron (NM_001033922, intron 2 of 5)	RLTR22_Mur|LTR|ERVK	2765	NM_001033922	224840	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding
diff_RLAGL_Vector_cond1_9935	chr9	15541965	15542205	+	3.72444	NA	intron (NM_133214, intron 2 of 2)	intron (NM_133214, intron 2 of 2)	36590	NM_133214	170748	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding
diff_RLAGL_Vector_cond1_6658	chr3	142339862	142340198	+	3.72376	NA	intron (NM_019808, intron 3 of 12)	intron (NM_019808, intron 3 of 12)	51820	NM_001190857	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding
diff_RLAGL_Vector_cond1_7603	chr5	29478588	29478828	+	3.72262	NA	promoter-TSS (NM_019944)	promoter-TSS (NM_019944)	-238	NM_019944	15285	Mm.103760	NM_019944		Mnx1	HB9|Hlxb9|MNR2	motor neuron and pancreas homeobox 1	protein-coding
diff_RLAGL_Vector_cond1_135	chr1	37665598	37665936	+	3.72192	NA	intron (NM_028096, intron 1 of 9)	intron (NM_028096, intron 1 of 9)	54044	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding
diff_RLAGL_Vector_cond1_5144	chr19	34270635	34270836	+	3.72179	NA	Intergenic	RLTR10D2|LTR|ERVK	-15362	NM_007392	11475	Mm.213025	NM_007392		Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding
diff_RLAGL_Vector_cond1_5253	chr2	6097192	6097623	+	3.72141	NA	Intergenic	Intergenic	32778	NM_001159657	227545	Mm.133542	NM_144883		Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding
diff_RLAGL_Vector_cond1_4386	chr17	34119287	34119511	+	3.72136	NA	non-coding (NR_037970, exon 1 of 13)	non-coding (NR_037970, exon 1 of 13)	501	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding
diff_RLAGL_Vector_cond1_188	chr1	55027238	55027454	+	3.71955	NA	exon (NM_031179, exon 1 of 25)	exon (NM_031179, exon 1 of 25)	132	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding
diff_RLAGL_Vector_cond1_6761	chr3	156562122	156562351	+	3.71727	NA	promoter-TSS (NR_040399)	promoter-TSS (NR_040399)	442	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding
diff_RLAGL_Vector_cond1_10004	chr9	35175960	35176206	+	3.71692	NA	promoter-TSS (NM_027030)	promoter-TSS (NM_027030)	-96	NM_027030	69305	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding
diff_RLAGL_Vector_cond1_4551	chr17	66331300	66331541	+	3.71642	NA	Intergenic	Intergenic	118330	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding
diff_RLAGL_Vector_cond1_4332	chr17	25578974	25579177	+	3.71594	NA	promoter-TSS (NM_029624)	promoter-TSS (NM_029624)	-99	NR_045520	76483	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding
diff_RLAGL_Vector_cond1_1991	chr11	118443275	118443540	+	3.71520	NA	promoter-TSS (NM_001204130)	promoter-TSS (NM_001204130)	-127	NM_001204130	56745	Mm.23845	NM_019959		C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding
diff_RLAGL_Vector_cond1_8885	chr7	28277658	28277869	+	3.71397	NA	promoter-TSS (NM_001177427)	promoter-TSS (NM_001177427)	57	NM_001177427	434156	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding
diff_RLAGL_Vector_cond1_10149	chr9	70855090	70855397	+	3.71347	NA	intron (NM_008280, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	79565	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding
diff_RLAGL_Vector_cond1_10296	chr9	108832222	108832644	+	3.71158	NA	intron (NM_080437, intron 2 of 34)	CpG	6113	NM_080437	107934	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7705	chr5	48915802	48916013	+	3.71109	NA	intron (NM_001199244, intron 1 of 7)	intron (NM_001199244, intron 1 of 7)	-26350	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
diff_RLAGL_Vector_cond1_5151	chr19	38033399	38033626	+	3.71100	NA	intron (NM_001099634, intron 1 of 52)	intron (NM_001099634, intron 1 of 52)	10065	NM_001302140	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding
diff_RLAGL_Vector_cond1_4	chr1	4544011	4544224	+	3.71013	NA	Intergenic	Intergenic	-46763	NM_011441	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding
diff_RLAGL_Vector_cond1_805	chr1	191444538	191444789	+	3.70914	NA	Intergenic	Tigger19a|DNA|TcMar-Tigger	-47622	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding
diff_RLAGL_Vector_cond1_1083	chr10	60831389	60831729	+	3.70706	NA	promoter-TSS (NM_029770)	promoter-TSS (NM_029770)	22	NM_029770	107449	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 homolog B (C. elegans)	protein-coding
diff_RLAGL_Vector_cond1_234	chr1	67055886	67056099	+	3.70601	NA	Intergenic	RMER20C_Mm|LTR|ERVK	-17120	NM_021295	14768	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding
diff_RLAGL_Vector_cond1_10112	chr9	60800773	60800983	+	3.70586	NA	intron (NM_028283, intron 1 of 18)	L1MC5|LINE|L1	6330	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
diff_RLAGL_Vector_cond1_2112	chr12	20229521	20229764	+	3.70500	NA	Intergenic	MMERGLN-int|LTR|ERV1	586137	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA
diff_RLAGL_Vector_cond1_9950	chr9	21029536	21029760	+	3.70485	NA	TTS (NM_010493)	TTS (NM_010493)	275	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding
diff_RLAGL_Vector_cond1_5663	chr2	103303175	103303438	+	3.70438	NA	promoter-TSS (NM_007914)	promoter-TSS (NM_007914)	-110	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding
diff_RLAGL_Vector_cond1_6826	chr4	12007224	12007437	+	3.70398	NA	Intergenic	MER5A|DNA|hAT-Charlie	40756	NR_040577	100503636	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA
diff_RLAGL_Vector_cond1_7369	chr4	138282923	138283161	+	3.70292	NA	intron (NM_001190978, intron 6 of 11)	intron (NM_001190978, intron 6 of 11)	20791	NM_001190978	16559	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding
diff_RLAGL_Vector_cond1_9316	chr7	141467296	141467619	+	3.70180	NA	promoter-TSS (NM_001111049)	promoter-TSS (NM_001111049)	95	NM_001111049	12476	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding
diff_RLAGL_Vector_cond1_2465	chr12	113610999	113611199	+	3.70162	NA	Intergenic	Intergenic	67191	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding
diff_RLAGL_Vector_cond1_4344	chr17	26916918	26917135	+	3.70161	NA	promoter-TSS (NM_053173)	promoter-TSS (NM_053173)	-65	NM_053173	16580	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding
diff_RLAGL_Vector_cond1_8882	chr7	27978817	27979274	+	3.69843	NA	intron (NM_001081021, intron 1 of 5)	intron (NM_001081021, intron 1 of 5)	112	NM_001081021	338354	Mm.389873	NM_001081021		Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding
diff_RLAGL_Vector_cond1_4397	chr17	35135224	35135522	+	3.69770	NA	promoter-TSS (NM_001252469)	promoter-TSS (NM_001252469)	195	NM_057171	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding
diff_RLAGL_Vector_cond1_2100	chr12	16726264	16726493	+	3.69733	NA	intron (NM_001252071, intron 4 of 32)	intron (NM_001252071, intron 4 of 32)	30861	NM_001252071	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding
diff_RLAGL_Vector_cond1_281	chr1	75316963	75317173	+	3.69633	NA	promoter-TSS (NM_016878)	promoter-TSS (NM_016878)	-51	NM_016878	13437	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding
diff_RLAGL_Vector_cond1_8962	chr7	45720918	45721237	+	3.69368	NA	promoter-TSS (NM_001033170)	promoter-TSS (NM_001033170)	-143	NM_001033170	73813	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding
diff_RLAGL_Vector_cond1_9397	chr8	18767587	18767906	+	3.69365	NA	intron (NM_173189, intron 12 of 13)	intron (NM_173189, intron 12 of 13)	-26184	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding
diff_RLAGL_Vector_cond1_2299	chr12	72070225	72070617	+	3.69339	NA	exon (NM_181752, exon 1 of 1)	exon (NM_181752, exon 1 of 1)	570	NM_181752	238252	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding
diff_RLAGL_Vector_cond1_7448	chr4	149426636	149426884	+	3.69331	NA	promoter-TSS (NM_022022)	promoter-TSS (NM_022022)	-129	NM_022022	63958	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding
diff_RLAGL_Vector_cond1_389	chr1	102623728	102623934	+	3.69324	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	1468063	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
diff_RLAGL_Vector_cond1_10051	chr9	44407470	44407753	+	3.69314	NA	promoter-TSS (NM_024266)	promoter-TSS (NM_024266)	-63	NM_021789	60409	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding
diff_RLAGL_Vector_cond1_3688	chr15	73748155	73748422	+	3.69296	NA	5' UTR (NM_008975, exon 1 of 6)	5' UTR (NM_008975, exon 1 of 6)	262	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding
diff_RLAGL_Vector_cond1_583	chr1	153751825	153752063	+	3.69117	NA	5' UTR (NM_011882, exon 2 of 9)	5' UTR (NM_011882, exon 2 of 9)	2518	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding
diff_RLAGL_Vector_cond1_4639	chr17	83308647	83308850	+	3.68961	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-42183	NM_001114361	78798	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding
diff_RLAGL_Vector_cond1_5711	chr2	113479207	113479480	+	3.68945	NA	intron (NM_001285458, intron 3 of 16)	intron (NM_001285458, intron 3 of 16)	38279	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|ld	formin 1	protein-coding
diff_RLAGL_Vector_cond1_1463	chr11	5499503	5499745	+	3.68912	NA	Intergenic	Intergenic	-21017	NM_001271730	22433	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_4961	chr18	73703600	73703851	+	3.68870	NA	promoter-TSS (NM_008540)	promoter-TSS (NM_008540)	16	NM_008540	17128	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding
diff_RLAGL_Vector_cond1_7368	chr4	137861816	137862015	+	3.68774	NA	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-322	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding
diff_RLAGL_Vector_cond1_6294	chr3	52179819	52180060	+	3.68773	NA	Intergenic	Intergenic	-74933	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7516	chr5	4961993	4962241	+	3.68689	NA	intron (NM_001310448, intron 9 of 13)	intron (NM_001310448, intron 9 of 13)	-203901	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_8852	chr7	19119727	19120003	+	3.68689	NA	promoter-TSS (NM_175530)	promoter-TSS (NM_175530)	6	NM_175530	243867	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding
diff_RLAGL_Vector_cond1_7754	chr5	64864740	64865020	+	3.68651	NA	Intergenic	Intergenic	61357	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding
diff_RLAGL_Vector_cond1_2030	chr11	121741514	121741750	+	3.68488	NA	Intergenic	Intergenic	39205	NM_144797	210029	Mm.153566	NM_144797		Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding
diff_RLAGL_Vector_cond1_3788	chr15	95743058	95743263	+	3.68478	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	8431	NR_131148	629300	Mm.247258	NR_131148		Gm6961	EG629300	predicted gene 6961	ncRNA
diff_RLAGL_Vector_cond1_9233	chr7	126799489	126799727	+	3.68434	NA	promoter-TSS (NM_001177307)	promoter-TSS (NM_001177307)	-354	NM_007438	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding
diff_RLAGL_Vector_cond1_2986	chr14	6823264	6823494	+	3.68308	NA	Intergenic	Intergenic	-66322	NM_001309401	100041151	Mm.396155	NM_001309401		Gm3636	100042043	predicted gene 3636	protein-coding
diff_RLAGL_Vector_cond1_7613	chr5	32135071	32135297	+	3.68293	NA	Intergenic	CpG	-1288	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding
diff_RLAGL_Vector_cond1_4375	chr17	32947361	32947604	+	3.68256	NA	promoter-TSS (NM_130882)	promoter-TSS (NM_130882)	-121	NM_130882	170716	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding
diff_RLAGL_Vector_cond1_792	chr1	189972917	189973140	+	3.68191	NA	Intergenic	Intergenic	-50740	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_9387	chr8	14072605	14072820	+	3.68175	NA	intron (NM_001034862, intron 2 of 5)	intron (NM_001034862, intron 2 of 5)	17615	NM_001034862	234086	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding
diff_RLAGL_Vector_cond1_8070	chr5	139814260	139814463	+	3.68069	NA	promoter-TSS (NM_001161548)	promoter-TSS (NM_001161548)	-78	NM_001161548	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding
diff_RLAGL_Vector_cond1_2036	chr12	4133276	4133501	+	3.67885	NA	promoter-TSS (NM_001159537)	promoter-TSS (NM_001159537)	-9	NM_001159537	104111	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding
diff_RLAGL_Vector_cond1_1016	chr10	40443915	40444212	+	3.67779	NA	intron (NM_001291817, intron 4 of 11)	intron (NM_001291817, intron 4 of 11)	94755	NM_001291817	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding
diff_RLAGL_Vector_cond1_2109	chr12	17576028	17576252	+	3.67701	NA	Intergenic	Intergenic	31267	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding
diff_RLAGL_Vector_cond1_5243	chr2	3713227	3713478	+	3.67693	NA	promoter-TSS (NM_025626)	promoter-TSS (NM_025626)	-106	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding
diff_RLAGL_Vector_cond1_8291	chr6	43265452	43265751	+	3.67654	NA	promoter-TSS (NM_133674)	promoter-TSS (NM_133674)	-43	NM_133674	54324	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding
diff_RLAGL_Vector_cond1_8565	chr6	115007107	115007306	+	3.67623	NA	intron (NM_026894, intron 7 of 7)	intron (NM_026894, intron 7 of 7)	30668	NM_026894	68971	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_4879	chr18	50128192	50128445	+	3.67612	NA	5' UTR (NM_008292, exon 1 of 24)	5' UTR (NM_008292, exon 1 of 24)	117	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding
diff_RLAGL_Vector_cond1_1942	chr11	113232012	113232211	+	3.67539	NA	Intergenic	Intergenic	-22442	NR_040276	319871	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA
diff_RLAGL_Vector_cond1_8857	chr7	19797255	19797515	+	3.67538	NA	promoter-TSS (NM_001161844)	promoter-TSS (NM_001161844)	-576	NM_001161844	80794	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding
diff_RLAGL_Vector_cond1_6524	chr3	107887562	107887793	+	3.67416	NA	intron (NM_133867, intron 12 of 18)	intron (NM_133867, intron 12 of 18)	-8177	NM_010360	14866	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding
diff_RLAGL_Vector_cond1_6679	chr3	145649735	145650060	+	3.67370	NA	promoter-TSS (NM_010516)	promoter-TSS (NM_010516)	88	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding
diff_RLAGL_Vector_cond1_10148	chr9	70834762	70835009	+	3.67365	NA	intron (NM_008280, intron 1 of 8)	intron (NM_008280, intron 1 of 8)	99923	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding
diff_RLAGL_Vector_cond1_1620	chr11	43551801	43552044	+	3.67351	NA	intron (NM_001045530, intron 2 of 5)	intron (NM_001045530, intron 2 of 5)	23173	NM_001045530	380694	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding
diff_RLAGL_Vector_cond1_1780	chr11	80789827	80790138	+	3.67268	NA	Intergenic	Intergenic	-9957	NM_177390	338367	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding
diff_RLAGL_Vector_cond1_8343	chr6	56789063	56789321	+	3.67203	NA	intron (NM_145958, intron 2 of 3)	intron (NM_145958, intron 2 of 3)	8621	NM_145958	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_8120	chr5	150262456	150262826	+	3.67202	NA	intron (NM_172887, intron 1 of 60)	intron (NM_172887, intron 1 of 60)	2711	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	furry homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_7974	chr5	123394617	123394942	+	3.67190	NA	promoter-TSS (NM_133917)	promoter-TSS (NM_133917)	-19	NM_177582	208104	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding
diff_RLAGL_Vector_cond1_1681	chr11	60302494	60302749	+	3.67122	NA	intron (NM_153080, intron 1 of 14)	RLTR26B_MM|LTR|ERVK	50284	NM_153080	216810	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding
diff_RLAGL_Vector_cond1_3160	chr14	60387082	60387351	+	3.67118	NA	Intergenic	Intergenic	8930	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding
diff_RLAGL_Vector_cond1_1359	chr10	116473828	116474069	+	3.67080	NA	promoter-TSS (NM_021452)	promoter-TSS (NM_021452)	-425	NM_021452	58802	Mm.440652	NM_021452		Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding
diff_RLAGL_Vector_cond1_5059	chr19	5846595	5846910	+	3.67080	NA	Intergenic	Intergenic	-1272	NR_003513	66961	Mm.281895	NR_003513		Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA
diff_RLAGL_Vector_cond1_9261	chr7	131560018	131560275	+	3.67076	NA	promoter-TSS (NM_009774)	promoter-TSS (NM_009774)	-245	NM_009774	12237	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	protein-coding
diff_RLAGL_Vector_cond1_9464	chr8	35667137	35667485	+	3.67012	NA	intron (NM_001081279, intron 2 of 2)	intron (NM_001081279, intron 2 of 2)	-78291	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA
diff_RLAGL_Vector_cond1_1469	chr11	7136354	7136660	+	3.66967	NA	intron (NM_009622, intron 5 of 19)	intron (NM_009622, intron 5 of 19)	52062	NR_045101	100041347	Mm.300962	NR_045101		Gm11985	OTTMUSG00000005133	predicted gene 11985	ncRNA
diff_RLAGL_Vector_cond1_3035	chr14	20479958	20480166	+	3.66950	NA	promoter-TSS (NM_001110794)	promoter-TSS (NM_001110794)	71	NM_009674	11750	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding
diff_RLAGL_Vector_cond1_9379	chr8	12672140	12672444	+	3.66865	NA	promoter-TSS (NM_198031)	promoter-TSS (NM_198031)	-192	NM_198031	259279	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding
diff_RLAGL_Vector_cond1_3976	chr16	43114062	43114282	+	3.66680	NA	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	-133112	NM_019778	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding
diff_RLAGL_Vector_cond1_2113	chr12	20921094	20921459	+	3.66430	NA	Intergenic	CpG	-105497	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA
diff_RLAGL_Vector_cond1_5796	chr2	132939104	132939337	+	3.66287	NA	intron (NM_198029, intron 3 of 14)	intron (NM_198029, intron 3 of 14)	6816	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_4983	chr18	78350397	78350636	+	3.66183	NA	intron (NM_207651, intron 2 of 21)	intron (NM_207651, intron 2 of 21)	-144076	NM_001110274	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding
diff_RLAGL_Vector_cond1_6660	chr3	142530259	142530493	+	3.66172	NA	promoter-TSS (NM_001083312)	promoter-TSS (NM_001083312)	40	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding
diff_RLAGL_Vector_cond1_8186	chr6	17053019	17053251	+	3.66132	NA	Intergenic	MLT1G3-int|LTR|ERVL-MaLR	-12014	NM_207176	21753	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding
diff_RLAGL_Vector_cond1_3310	chr14	102981783	102982006	+	3.66085	NA	TTS (NR_039592)	TTS (NR_039592)	738	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
diff_RLAGL_Vector_cond1_2881	chr13	96168998	96169206	+	3.66055	NA	Intergenic	Intergenic	-36525	NM_029210	75209	Mm.40436	NM_029210		Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding
diff_RLAGL_Vector_cond1_8241	chr6	30304467	30304695	+	3.65990	NA	promoter-TSS (NM_001169576)	promoter-TSS (NM_001169576)	-42	NM_001169576	22214	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding
diff_RLAGL_Vector_cond1_513	chr1	136126319	136126547	+	3.65805	NA	Intergenic	MIRb|SINE|MIR	4750	NR_046169	329253	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21|OTTMUSG00000026868	predicted gene 15850	ncRNA
diff_RLAGL_Vector_cond1_5523	chr2	65238902	65239171	+	3.65761	NA	promoter-TSS (NM_027225)	promoter-TSS (NM_027225)	-410	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding
diff_RLAGL_Vector_cond1_863	chr10	7663655	7663855	+	3.65673	NA	promoter-TSS (NM_008786)	promoter-TSS (NM_008786)	-171	NM_008786	18537	Mm.258431	NM_008786		Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding
diff_RLAGL_Vector_cond1_9104	chr7	83631741	83631973	+	3.65617	NA	promoter-TSS (NM_023377)	promoter-TSS (NM_023377)	-160	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding
diff_RLAGL_Vector_cond1_7253	chr4	119294465	119294737	+	3.65602	NA	promoter-TSS (NM_011732)	promoter-TSS (NM_011732)	-88	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding
diff_RLAGL_Vector_cond1_9764	chr8	108672319	108672569	+	3.65549	NA	Intergenic	Intergenic	-42200	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding
diff_RLAGL_Vector_cond1_9848	chr8	123389033	123389241	+	3.65437	NA	intron (NM_001286363, intron 5 of 16)	intron (NM_001286363, intron 5 of 16)	15426	NM_001037877	66855	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding
diff_RLAGL_Vector_cond1_6288	chr3	51359285	51359575	+	3.65320	NA	Intergenic	tRNA-Pro-CCY|tRNA|tRNA	-18786	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding
diff_RLAGL_Vector_cond1_3231	chr14	79214935	79215156	+	3.65241	NA	intron (NM_001033215, intron 2 of 2)	intron (NM_001033215, intron 2 of 2)	32322	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding
diff_RLAGL_Vector_cond1_4068	chr16	62814652	62814898	+	3.65190	NA	promoter-TSS (NM_026588)	promoter-TSS (NM_026588)	99	NM_026588	68159	Mm.386793	NM_026588		Stx19	A030009B12Rik	syntaxin 19	protein-coding
diff_RLAGL_Vector_cond1_5393	chr2	32451848	32452102	+	3.65134	NA	promoter-TSS (NM_146118)	promoter-TSS (NM_146118)	-505	NM_146118	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding
diff_RLAGL_Vector_cond1_4199	chr16	92494544	92494748	+	3.65111	NA	intron (NM_029740, intron 2 of 2)	intron (NM_029740, intron 2 of 2)	-3501	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding
diff_RLAGL_Vector_cond1_5095	chr19	14785813	14786026	+	3.64937	NA	Intergenic	Intergenic	-187736	NM_001302950	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4, homolog of Drosophila E(spl)	protein-coding
diff_RLAGL_Vector_cond1_9717	chr8	94098170	94098489	+	3.64909	NA	exon (NM_026116, exon 1 of 17)	exon (NM_026116, exon 1 of 17)	482	NM_026116	67378	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding
diff_RLAGL_Vector_cond1_1386	chr10	121033824	121034063	+	3.64759	NA	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	-61	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding
diff_RLAGL_Vector_cond1_5237	chr2	3118572	3118956	+	3.64729	NA	intron (NM_001081161, intron 1 of 7)	CpG	376	NM_001081161	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding
diff_RLAGL_Vector_cond1_4779	chr18	20811262	20811503	+	3.64718	NA	Intergenic	Intergenic	-64978	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding
diff_RLAGL_Vector_cond1_882	chr10	11281151	11281397	+	3.64692	NA	promoter-TSS (NM_027968)	promoter-TSS (NM_027968)	-56	NM_027968	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding
diff_RLAGL_Vector_cond1_7508	chr5	3596104	3596352	+	3.64683	NA	5' UTR (NM_027777, exon 1 of 23)	5' UTR (NM_027777, exon 1 of 23)	162	NM_001293806	71382	Mm.379196	NM_027777	ENSMUSG00000005907	Pex1	5430414H02Rik|E330005K07Rik|ZWS1	peroxisomal biogenesis factor 1	protein-coding
diff_RLAGL_Vector_cond1_5940	chr2	152363515	152363729	+	3.64654	NA	intron (NR_033505, intron 2 of 4)	intron (NR_033505, intron 2 of 4)	12944	NM_001009948	228777	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding
diff_RLAGL_Vector_cond1_5233	chr19	60889612	60889868	+	3.64583	NA	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	-9	NM_018869	14773	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding
diff_RLAGL_Vector_cond1_10510	chrX	105228734	105228947	+	3.64429	NA	Intergenic	Intergenic	-63335	NR_002167	279610	Mm.418157	NR_002167		E530001F21Rik	-	RIKEN cDNA E530001F21 gene	pseudo
diff_RLAGL_Vector_cond1_7919	chr5	110879639	110879938	+	3.64326	NA	promoter-TSS (NM_001267622)	promoter-TSS (NM_001267622)	-15	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding
diff_RLAGL_Vector_cond1_1691	chr11	61504756	61505009	+	3.64308	NA	promoter-TSS (NM_013717)	promoter-TSS (NM_013717)	-290	NM_013717	27078	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding
diff_RLAGL_Vector_cond1_7835	chr5	92763721	92763958	+	3.64258	NA	intron (NM_015756, intron 1 of 10)	intron (NM_015756, intron 1 of 10)	24723	NR_035487	100316841		NR_035487	ENSMUSG00000089268	Mir1961	mmu-mir-1961	microRNA 1961	ncRNA
diff_RLAGL_Vector_cond1_5706	chr2	112501241	112501474	+	3.64172	NA	intron (NM_028844, intron 1 of 5)	intron (NM_028844, intron 1 of 5)	8393	NM_028844	74268	Mm.315125	NM_028844		Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding
diff_RLAGL_Vector_cond1_1241	chr10	89732237	89732491	+	3.64025	NA	promoter-TSS (NM_025914)	promoter-TSS (NM_025914)	-69	NM_025914	67019	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding
diff_RLAGL_Vector_cond1_2506	chr12	119540683	119541117	+	3.64024	NA	Intergenic	Intergenic	97490	NM_001163136	238455	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding
diff_RLAGL_Vector_cond1_2917	chr13	108230034	108230282	+	3.63950	NA	intron (NM_029001, intron 1 of 7)	L2|LINE|L2	15754	NM_029001	74559	Mm.286127	NM_029001	ENSMUSG00000021696	Elovl7	9130013K24Rik|AI840082	ELOVL family member 7, elongation of long chain fatty acids (yeast)	protein-coding
diff_RLAGL_Vector_cond1_7361	chr4	136842799	136843086	+	3.63943	NA	Intergenic	Intergenic	-6930	NM_001290753	13844	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding
diff_RLAGL_Vector_cond1_7243	chr4	117836182	117836385	+	3.63913	NA	intron (NM_008135, intron 1 of 13)	CpG	1025	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding
diff_RLAGL_Vector_cond1_10075	chr9	50603577	50603785	+	3.63767	NA	promoter-TSS (NM_013897)	promoter-TSS (NM_013897)	168	NM_025848	66925	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding
diff_RLAGL_Vector_cond1_3754	chr15	88851678	88852031	+	3.63608	NA	Intergenic	Intergenic	-10340	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding
diff_RLAGL_Vector_cond1_3680	chr15	73090085	73090322	+	3.63582	NA	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-209	NM_053068	93696	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding
diff_RLAGL_Vector_cond1_1652	chr11	53384131	53384336	+	3.63508	NA	intron (NM_033565, intron 5 of 20)	intron (NM_033565, intron 5 of 20)	-24964	NR_105885	102465554		NR_105885	ENSMUSG00000105908	Mir6920	mmu-mir-6920	microRNA 6920	ncRNA
diff_RLAGL_Vector_cond1_9742	chr8	104534646	104534855	+	3.63447	NA	promoter-TSS (NM_001301164)	promoter-TSS (NM_001301164)	50	NM_001301164	12354	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding
diff_RLAGL_Vector_cond1_1791	chr11	83472932	83473274	+	3.63401	NA	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	-5	NM_027427	70439	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor	protein-coding
diff_RLAGL_Vector_cond1_9701	chr8	88853222	88853517	+	3.63334	NA	Intergenic	Intergenic	156341	NM_001128170	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	cylindromatosis (turban tumor syndrome)	protein-coding
diff_RLAGL_Vector_cond1_8077	chr5	141844843	141845070	+	3.63320	NA	intron (NM_177879, intron 5 of 44)	intron (NM_177879, intron 5 of 44)	-556541	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding
diff_RLAGL_Vector_cond1_3148	chr14	57230309	57230534	+	3.63240	NA	Intergenic	Intergenic	-96810	NM_001010937	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding
diff_RLAGL_Vector_cond1_5968	chr2	156726538	156726760	+	3.63122	NA	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	5370	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_10512	chrX	106186757	106187020	+	3.63116	NA	promoter-TSS (NM_008828)	promoter-TSS (NM_008828)	-212	NM_008828	18655	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding
diff_RLAGL_Vector_cond1_7187	chr4	106778404	106778640	+	3.63102	NA	intron (NM_025590, intron 1 of 15)	intron (NM_025590, intron 1 of 15)	21309	NM_025590	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding
diff_RLAGL_Vector_cond1_8191	chr6	17578442	17578664	+	3.63089	NA	Intergenic	Intergenic	-58545	NM_007604	12343	Mm.392504	NM_007604		Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding
diff_RLAGL_Vector_cond1_5335	chr2	21205506	21205782	+	3.63057	NA	promoter-TSS (NM_001001297)	promoter-TSS (NM_001001297)	-80	NM_177588	208967	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding
diff_RLAGL_Vector_cond1_1299	chr10	105544553	105544771	+	3.63038	NA	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	29817	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
diff_RLAGL_Vector_cond1_9750	chr8	105930716	105930916	+	3.62988	NA	3' UTR (NM_173432, exon 3 of 3)	3' UTR (NM_173432, exon 3 of 3)	3046	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding
diff_RLAGL_Vector_cond1_9427	chr8	24479714	24479947	+	3.62856	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	5156	NR_035483	100316707		NR_035483	ENSMUSG00000088552	Mir1957a	Mir1957|mmu-mir-1957|mmu-mir-1957a	microRNA 1957a	ncRNA
diff_RLAGL_Vector_cond1_9621	chr8	72376953	72377152	+	3.62631	NA	TTS (NM_001122832)	TTS (NM_001122832)	44422	NM_007944	13859	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding
diff_RLAGL_Vector_cond1_9378	chr8	12030841	12031047	+	3.62616	NA	Intergenic	Intergenic	190423	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding
diff_RLAGL_Vector_cond1_612	chr1	160850616	160850948	+	3.62500	NA	Intergenic	MLT2B2|LTR|ERVL	-55629	NM_001024952	381305	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding
diff_RLAGL_Vector_cond1_849	chr10	5280593	5280924	+	3.62450	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-86051	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756	spectrin repeat containing, nuclear envelope 1	protein-coding
diff_RLAGL_Vector_cond1_6740	chr3	153806343	153806594	+	3.62436	NA	Intergenic	Intergenic	-14381	NR_045801	70594	Mm.491050	NR_045801	ENSMUSG00000062046	5730460C07Rik	-	RIKEN cDNA 5730460C07 gene	ncRNA
diff_RLAGL_Vector_cond1_4102	chr16	71739207	71739454	+	3.62370	NA	Intergenic	RMER19B2|LTR|ERVK	489426	NR_040576	78221	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA
diff_RLAGL_Vector_cond1_6217	chr3	24553826	24554099	+	3.62366	NA	Intergenic	Intergenic	1599345	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
diff_RLAGL_Vector_cond1_1584	chr11	31803540	31803753	+	3.62298	NA	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	20901	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA
diff_RLAGL_Vector_cond1_9231	chr7	126630859	126631145	+	3.62283	NA	Intergenic	Intergenic	-5532	NM_019738	56312	Mm.18742	NM_019738		Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding
diff_RLAGL_Vector_cond1_4365	chr17	31564850	31565184	+	3.62279	NA	intron (NM_016670, intron 1 of 10)	CpG	244	NM_016670	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding
diff_RLAGL_Vector_cond1_8958	chr7	45361464	45361665	+	3.62004	NA	intron (NM_029741, intron 2 of 29)	CpG	-4599	NR_015480	50994	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA
diff_RLAGL_Vector_cond1_9683	chr8	84913136	84913341	+	3.61984	NA	promoter-TSS (NR_103491)	promoter-TSS (NR_103491)	-97	NR_103491	100503676	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA
diff_RLAGL_Vector_cond1_8640	chr6	128125517	128125742	+	3.61916	NA	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	17949	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding
diff_RLAGL_Vector_cond1_8388	chr6	67124171	67124454	+	3.61899	NA	Intergenic	Intergenic	-86905	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding
diff_RLAGL_Vector_cond1_9725	chr8	95331405	95331643	+	3.61545	NA	promoter-TSS (NM_133954)	promoter-TSS (NM_133954)	426	NM_024467	79233	Mm.350514	NM_024467	ENSMUSG00000046556	Zfp319	AI225750|AI413472|Znf319|mKIAA1388	zinc finger protein 319	protein-coding
diff_RLAGL_Vector_cond1_6011	chr2	164422993	164423268	+	3.61504	NA	Intergenic	Intergenic	-17970	NM_001252563	17183	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding
diff_RLAGL_Vector_cond1_4217	chr16	96127384	96127591	+	3.61210	NA	intron (NM_008251, intron 1 of 5)	CpG-5899	238	NM_008251	15312	Mm.2756	NM_008251		Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding
diff_RLAGL_Vector_cond1_4630	chr17	80728574	80728850	+	3.61164	NA	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-687	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding
diff_RLAGL_Vector_cond1_6055	chr2	170469642	170469883	+	3.61081	NA	Intergenic	Intergenic	-26666	NM_001013369	109054	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding
diff_RLAGL_Vector_cond1_2212	chr12	45060927	45061131	+	3.61067	NA	intron (NM_144552, intron 1 of 5)	intron (NM_144552, intron 1 of 5)	13454	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
diff_RLAGL_Vector_cond1_10559	chrX	139634866	139635072	+	3.61007	NA	intron (NM_023270, intron 1 of 6)	intron (NM_023270, intron 1 of 6)	24349	NM_023270	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding
diff_RLAGL_Vector_cond1_3450	chr15	9140458	9140674	+	3.60709	NA	promoter-TSS (NM_013787)	promoter-TSS (NM_013787)	-4	NM_177178	320506	Mm.259886	NM_177178		Lmbrd2	9930036E21Rik	LMBR1 domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_8315	chr6	50680493	50680717	+	3.60695	NA	Intergenic	Intergenic	-26212	NM_021892	60531	Mm.157158	NM_021892		Npvf	Rfrp	neuropeptide VF precursor	protein-coding
diff_RLAGL_Vector_cond1_5753	chr2	122611129	122611368	+	3.60669	NA	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	29	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding
diff_RLAGL_Vector_cond1_9095	chr7	82335608	82335828	+	3.60662	NA	promoter-TSS (NM_001190374)	promoter-TSS (NM_001190374)	24	NM_001190374	269959	Mm.65306	NM_001190374	ENSMUSG00000070469	Adamtsl3	9230119C12Rik|C130057K09|mKIAA1233	ADAMTS-like 3	protein-coding
diff_RLAGL_Vector_cond1_9229	chr7	126503474	126503699	+	3.60564	NA	promoter-TSS (NM_183020)	promoter-TSS (NM_183020)	-284	NM_183020	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding
diff_RLAGL_Vector_cond1_2390	chr12	101029273	101029478	+	3.60366	NA	promoter-TSS (NM_026681)	promoter-TSS (NM_026681)	-392	NM_026681	68339	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding
diff_RLAGL_Vector_cond1_2318	chr12	76710166	76710370	+	3.60295	NA	5' UTR (NM_013675, exon 1 of 36)	5' UTR (NM_013675, exon 1 of 36)	279	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding
diff_RLAGL_Vector_cond1_1605	chr11	35971233	35971452	+	3.60089	NA	intron (NM_170779, intron 1 of 22)	intron (NM_170779, intron 1 of 22)	8747	NM_170779	211652	Mm.31267	NM_170779		Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_2298	chr12	71904393	71904683	+	3.60069	NA	intron (NM_001286452, intron 2 of 24)	intron (NM_001286452, intron 2 of 24)	14995	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding
diff_RLAGL_Vector_cond1_9312	chr7	141117633	141117848	+	3.59951	NA	promoter-TSS (NM_178381)	promoter-TSS (NM_178381)	66	NM_178381	71345	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding
diff_RLAGL_Vector_cond1_8151	chr6	6623443	6623692	+	3.59764	NA	Intergenic	Intergenic	-44909	NM_009169	20422	Mm.2469	NM_009169		Shfm1	DSS1|Shfdg1|Shfg	split hand/foot malformation (ectrodactyly) type 1	protein-coding
diff_RLAGL_Vector_cond1_1257	chr10	94035856	94036061	+	3.59511	NA	promoter-TSS (NM_001304720)	promoter-TSS (NM_001304720)	-43	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding
diff_RLAGL_Vector_cond1_761	chr1	184911970	184912193	+	3.59417	NA	exon (NM_145515, exon 13 of 18)	exon (NM_145515, exon 13 of 18)	-29045	NM_178692	226777	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding
diff_RLAGL_Vector_cond1_10224	chr9	92457804	92458008	+	3.59401	NA	5' UTR (NM_178711, exon 1 of 9)	5' UTR (NM_178711, exon 1 of 9)	528	NM_178711	235527	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding
diff_RLAGL_Vector_cond1_5229	chr19	59943485	59943687	+	3.59312	NA	promoter-TSS (NM_001164367)	promoter-TSS (NM_001164367)	68	NM_001164367	74998	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding
diff_RLAGL_Vector_cond1_3181	chr14	64652318	64652653	+	3.59293	NA	promoter-TSS (NM_001081177)	promoter-TSS (NM_001081177)	-46	NM_001081177	16554	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding
diff_RLAGL_Vector_cond1_5754	chr2	122760775	122761189	+	3.59281	NA	Intergenic	MIR|SINE|MIR	-4377	NM_001162503	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding
diff_RLAGL_Vector_cond1_7602	chr5	29212084	29212453	+	3.59204	NA	intron (NM_021470, intron 8 of 9)	intron (NM_021470, intron 8 of 9)	16275	NR_110371	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding
diff_RLAGL_Vector_cond1_2098	chr12	15816748	15817178	+	3.59082	NA	promoter-TSS (NM_144551)	promoter-TSS (NM_144551)	-178	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles homolog 2 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1419	chr10	126934658	126934913	+	3.59073	NA	Intergenic	Intergenic	-33414	NM_001159559	68876	Mm.276769	NM_026858	ENSMUSG00000025436	Xrcc6bp1	1110068E08Rik|2410012H02Rik	XRCC6 binding protein 1	protein-coding
diff_RLAGL_Vector_cond1_1268	chr10	96438814	96439105	+	3.59022	NA	Intergenic	Intergenic	-178042	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding
diff_RLAGL_Vector_cond1_2039	chr12	4917114	4917395	+	3.59016	NA	promoter-TSS (NM_001099628)	promoter-TSS (NM_001099628)	-99	NM_001099628	320817	Mm.210966	NM_001099628		Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding
diff_RLAGL_Vector_cond1_3676	chr15	71470189	71470437	+	3.59006	NA	intron (NM_177819, intron 12 of 19)	intron (NM_177819, intron 12 of 19)	257525	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
diff_RLAGL_Vector_cond1_3986	chr16	44347097	44347328	+	3.58935	NA	promoter-TSS (NM_144550)	promoter-TSS (NM_144550)	-189	NM_144550	212514	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding
diff_RLAGL_Vector_cond1_6444	chr3	89246238	89246596	+	3.58820	NA	promoter-TSS (NM_183037)	promoter-TSS (NM_183037)	-21	NM_025327	66059	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding
diff_RLAGL_Vector_cond1_6189	chr3	19395427	19395681	+	3.58802	NA	Intergenic	L1VL2|LINE|L1	-84232	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding
diff_RLAGL_Vector_cond1_5418	chr2	39065598	39065860	+	3.58492	NA	promoter-TSS (NR_110968)	promoter-TSS (NR_110968)	-188	NM_001290649	76899	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding
diff_RLAGL_Vector_cond1_286	chr1	77205114	77205322	+	3.58387	NA	Intergenic	Intergenic	291550	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA
diff_RLAGL_Vector_cond1_7756	chr5	65435679	65435947	+	3.58333	NA	promoter-TSS (NM_009466)	promoter-TSS (NM_009466)	29	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding
diff_RLAGL_Vector_cond1_9747	chr8	105758536	105758819	+	3.58302	NA	promoter-TSS (NM_027469)	promoter-TSS (NM_027469)	-70	NM_027469	70575	Mm.40954	NM_027469		Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_8480	chr6	91614961	91615397	+	3.58300	NA	Intergenic	Intergenic	-68888	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding
diff_RLAGL_Vector_cond1_6207	chr3	21361143	21361356	+	3.58265	NA	Intergenic	Intergenic	-715403	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
diff_RLAGL_Vector_cond1_5831	chr2	137153797	137154001	+	3.58189	NA	Intergenic	Intergenic	-37379	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding
diff_RLAGL_Vector_cond1_9272	chr7	133029650	133029859	+	3.58111	NA	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-14507	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_888	chr10	12862060	12862267	+	3.58082	NA	promoter-TSS (NM_011682)	promoter-TSS (NM_011682)	-428	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding
diff_RLAGL_Vector_cond1_7013	chr4	62286281	62286566	+	3.58062	NA	promoter-TSS (NM_025286)	promoter-TSS (NM_025286)	-6	NM_025286	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding
diff_RLAGL_Vector_cond1_5300	chr2	15055066	15055265	+	3.58058	NA	promoter-TSS (NM_029466)	promoter-TSS (NM_029466)	-197	NM_029466	75869	Mm.174068	NM_029466		Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding
diff_RLAGL_Vector_cond1_1833	chr11	94171991	94172438	+	3.58033	NA	Intergenic	Intergenic	-39240	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding
diff_RLAGL_Vector_cond1_993	chr10	37136239	37136447	+	3.57721	NA	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2583	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
diff_RLAGL_Vector_cond1_742	chr1	181345712	181345959	+	3.57470	NA	Intergenic	Intergenic	-6793	NM_001160211	72978	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon homolog 3 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6420	chr3	82903927	82904249	+	3.57349	NA	promoter-TSS (NM_023624)	promoter-TSS (NM_023624)	-114	NM_023624	79235	Mm.33921	NM_023624	ENSMUSG00000028003	Lrat	1300010A18Rik|AI449251	lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	protein-coding
diff_RLAGL_Vector_cond1_10248	chr9	99243179	99243484	+	3.57284	NA	promoter-TSS (NM_023873)	promoter-TSS (NM_023873)	-137	NM_023873	68121	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding
diff_RLAGL_Vector_cond1_1179	chr10	81192427	81192751	+	3.57266	NA	exon (NM_007828, exon 8 of 8)	exon (NM_007828, exon 8 of 8)	-2102	NR_015477	69678	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type homolog (human), opposite strand	ncRNA
diff_RLAGL_Vector_cond1_3300	chr14	101654423	101654781	+	3.57257	NA	intron (NM_016723, intron 2 of 8)	intron (NM_016723, intron 2 of 8)	635	NM_016723	50933	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding
diff_RLAGL_Vector_cond1_403	chr1	106477776	106478000	+	3.57161	NA	Intergenic	Intergenic	68743	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA
diff_RLAGL_Vector_cond1_5567	chr2	77169942	77170218	+	3.56837	NA	intron (NM_001025576, intron 1 of 23)	intron (NM_001025576, intron 1 of 23)	555	NM_001025576	545428	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI|ENSMUSG00000075261	coiled-coil domain containing 141	protein-coding
diff_RLAGL_Vector_cond1_8687	chr6	135326907	135327223	+	3.56665	NA	Intergenic	Intergenic	-16681	NM_029595	76400	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding
diff_RLAGL_Vector_cond1_4225	chr16	97730500	97730862	+	3.56616	NA	Intergenic	Intergenic	33074	NM_023663	72388	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding
diff_RLAGL_Vector_cond1_9672	chr8	83607772	83608005	+	3.56608	NA	promoter-TSS (NM_001308227)	promoter-TSS (NM_001308227)	-287	NM_018808	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ (Hsp40) homolog, subfamily B, member 1	protein-coding
diff_RLAGL_Vector_cond1_2330	chr12	83842262	83842557	+	3.56520	NA	promoter-TSS (NM_001272055)	promoter-TSS (NM_001272055)	-51	NM_001136075	18222	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	numb gene homolog (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_5187	chr19	47464161	47464418	+	3.56279	NA	5' UTR (NM_001164717, exon 1 of 14)	5' UTR (NM_001164717, exon 1 of 14)	122	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding
diff_RLAGL_Vector_cond1_6793	chr4	4138399	4138599	+	3.56169	NA	promoter-TSS (NM_001002927)	promoter-TSS (NM_001002927)	-54	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding
diff_RLAGL_Vector_cond1_4965	chr18	74064930	74065180	+	3.56085	NA	promoter-TSS (NM_172632)	promoter-TSS (NM_172632)	-106	NM_172632	225724	Mm.254517	NM_172632	ENSMUSG00000024558	Mapk4	A330097D03Rik|Erk3|Prkm4|p63Mapk	mitogen-activated protein kinase 4	protein-coding
diff_RLAGL_Vector_cond1_348	chr1	89580735	89580980	+	3.55872	NA	intron (NM_178119, intron 1 of 17)	CpG	103035	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA
diff_RLAGL_Vector_cond1_2696	chr13	57040303	57040552	+	3.55862	NA	Intergenic	Intergenic	-144638	NM_001302372	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding
diff_RLAGL_Vector_cond1_2594	chr13	23752148	23752350	+	3.55849	NA	promoter-TSS (NM_178203)	promoter-TSS (NM_178203)	-131	NM_178203	319150		NM_178203		Hist1h3b	H3-53	histone cluster 1, H3b	protein-coding
diff_RLAGL_Vector_cond1_8952	chr7	44722163	44722387	+	3.55643	NA	Intergenic	RLTR12B|LTR|ERVK	13532	NM_029317	75510	Mm.273301	NM_029317	ENSMUSG00000066500	Izumo2	1700023D19Rik	IZUMO family member 2	protein-coding
diff_RLAGL_Vector_cond1_8312	chr6	49656659	49656866	+	3.55616	NA	Intergenic	Intergenic	-165948	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding
diff_RLAGL_Vector_cond1_6426	chr3	84436831	84437068	+	3.55611	NA	Intergenic	Intergenic	42542	NM_001205355	229474	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding
diff_RLAGL_Vector_cond1_9600	chr8	69716943	69717162	+	3.55451	NA	promoter-TSS (NM_181274)	promoter-TSS (NM_181274)	-150	NM_001039967	66869	Mm.334581	NM_181274		Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding
diff_RLAGL_Vector_cond1_1994	chr11	118470684	118470889	+	3.55422	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	-6174	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding
diff_RLAGL_Vector_cond1_2967	chr13	117898036	117898303	+	3.55114	NA	intron (NM_010408, intron 4 of 7)	intron (NM_010408, intron 4 of 7)	-178158	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA
diff_RLAGL_Vector_cond1_3373	chr14	120342162	120342504	+	3.55058	NA	intron (NM_175341, intron 2 of 8)	intron (NM_175341, intron 2 of 8)	66664	NM_207515	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding
diff_RLAGL_Vector_cond1_6115	chr2	178717968	178718346	+	3.55017	NA	Intergenic	Intergenic	287642	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding
diff_RLAGL_Vector_cond1_4371	chr17	32551166	32551371	+	3.54798	NA	3' UTR (NM_024442, exon 13 of 13)	3' UTR (NM_024442, exon 13 of 13)	14639	NM_024442	70101	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding
diff_RLAGL_Vector_cond1_1647	chr11	51875909	51876135	+	3.54581	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	-18541	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding
diff_RLAGL_Vector_cond1_475	chr1	130761566	130761802	+	3.54539	NA	Intergenic	Intergenic	29708	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding
diff_RLAGL_Vector_cond1_2822	chr13	75726676	75727028	+	3.54524	NA	intron (NM_138953, intron 2 of 11)	intron (NM_138953, intron 2 of 11)	19368	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding
diff_RLAGL_Vector_cond1_204	chr1	60621067	60621273	+	3.54476	NA	Intergenic	MTEb|LTR|ERVL-MaLR	-54405	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding
diff_RLAGL_Vector_cond1_4962	chr18	73744220	73744482	+	3.54386	NA	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	10128	NM_053255	114615	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC homolog 1 (E. coli)	protein-coding
diff_RLAGL_Vector_cond1_4498	chr17	55956168	55956455	+	3.54170	NA	non-coding (NR_108021, exon 3 of 3)	non-coding (NR_108021, exon 3 of 3)	-2876	NM_028381	72886	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding
diff_RLAGL_Vector_cond1_9256	chr7	130646025	130646256	+	3.54103	NA	intron (NM_001004468, intron 3 of 21)	CpG	-46416	NM_021314	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding
diff_RLAGL_Vector_cond1_6409	chr3	79542677	79542877	+	3.54091	NA	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	24902	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding
diff_RLAGL_Vector_cond1_436	chr1	118595576	118595779	+	3.53860	NA	intron (NM_001293300, intron 38 of 40)	MIR3|SINE|MIR	-32268	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding
diff_RLAGL_Vector_cond1_3863	chr16	10992871	10993135	+	3.53526	NA	intron (NM_019980, intron 1 of 3)	CpG	118	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding
diff_RLAGL_Vector_cond1_2324	chr12	79541622	79541850	+	3.53497	NA	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	244385	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 homolog B	protein-coding
diff_RLAGL_Vector_cond1_706	chr1	176754305	176754516	+	3.53472	NA	intron (NM_001099637, intron 13 of 19)	intron (NM_001099637, intron 13 of 19)	18013	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA
diff_RLAGL_Vector_cond1_7895	chr5	107987343	107987549	+	3.53380	NA	promoter-TSS (NM_026062)	promoter-TSS (NM_026062)	-369	NM_026062	67266	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding
diff_RLAGL_Vector_cond1_782	chr1	188735000	188735220	+	3.53353	NA	intron (NM_021408, intron 42 of 70)	intron (NM_021408, intron 42 of 70)	272730	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
diff_RLAGL_Vector_cond1_9228	chr7	126487250	126487474	+	3.53352	NA	promoter-TSS (NM_001163713)	promoter-TSS (NM_001163713)	7	NM_172745	233870	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding
diff_RLAGL_Vector_cond1_4747	chr18	10866180	10866430	+	3.53295	NA	Intergenic	Intergenic	-80753	NR_029781	723959		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA
diff_RLAGL_Vector_cond1_2115	chr12	21111565	21111821	+	3.53271	NA	promoter-TSS (NM_001004364)	promoter-TSS (NM_001004364)	-63	NM_001004364	211914	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
diff_RLAGL_Vector_cond1_9241	chr7	127744261	127744486	+	3.53241	NA	Intergenic	Intergenic	-2402	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding
diff_RLAGL_Vector_cond1_8658	chr6	131418856	131419159	+	3.53125	NA	Intergenic	Intergenic	-30557	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding
diff_RLAGL_Vector_cond1_2749	chr13	63807190	63807427	+	3.52847	NA	Intergenic	RMER21B|LTR|ERV1	-8012	NM_001013608	76251	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding
diff_RLAGL_Vector_cond1_1195	chr10	83359921	83360169	+	3.52748	NA	promoter-TSS (NM_026579)	promoter-TSS (NM_026579)	-176	NM_026579	28109	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding
diff_RLAGL_Vector_cond1_9111	chr7	84643739	84643957	+	3.52557	NA	intron (NM_022985, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	35503	NM_022985	65098	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding
diff_RLAGL_Vector_cond1_1139	chr10	77902688	77902888	+	3.52543	NA	promoter-TSS (NM_145152)	promoter-TSS (NM_145152)	-252	NM_145152	237387	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding
diff_RLAGL_Vector_cond1_7319	chr4	132796270	132796476	+	3.52461	NA	promoter-TSS (NM_001033308)	promoter-TSS (NM_001033308)	-9	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding
diff_RLAGL_Vector_cond1_2826	chr13	76384654	76384871	+	3.52404	NA	promoter-TSS (NM_030174)	promoter-TSS (NM_030174)	-199	NM_030174	78771	Mm.316249	NM_030174		Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding
diff_RLAGL_Vector_cond1_280	chr1	75236161	75236400	+	3.52392	NA	promoter-TSS (NM_020266)	promoter-TSS (NM_020266)	-143	NM_178055	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ (Hsp40) homolog, subfamily B, member 2	protein-coding
diff_RLAGL_Vector_cond1_9280	chr7	135403496	135403707	+	3.52367	NA	Intergenic	Intergenic	-6766	NM_183193	270004	Mm.132547	NM_183193	ENSMUSG00000048377	Foxi2	B130055A05Rik	forkhead box I2	protein-coding
diff_RLAGL_Vector_cond1_2237	chr12	52446609	52446850	+	3.52119	NA	Intergenic	Intergenic	-69348	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding
diff_RLAGL_Vector_cond1_6457	chr3	92998777	92999026	+	3.52022	NA	Intergenic	Intergenic	6675	NM_001018079	69520	Mm.439968	NM_001018079	ENSMUSG00000068885	Lce3f	2310002A05Rik	late cornified envelope 3F	protein-coding
diff_RLAGL_Vector_cond1_2902	chr13	103957413	103957643	+	3.52013	NA	Intergenic	L2c|LINE|L2	-36942	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbb2ip	1700028E05Rik|Erbin|mKIAA1225	Erbb2 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_1913	chr11	105525731	105525950	+	3.51912	NA	Intergenic	Intergenic	-64146	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
diff_RLAGL_Vector_cond1_10384	chr9	124288362	124288563	+	3.51714	NA	Intergenic	Intergenic	24232	NM_001243117	630836	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding
diff_RLAGL_Vector_cond1_8004	chr5	131990565	131990847	+	3.51569	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	110437	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA
diff_RLAGL_Vector_cond1_5189	chr19	47579024	47579233	+	3.51457	NA	promoter-TSS (NM_001164639)	promoter-TSS (NM_001164639)	-891	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding
diff_RLAGL_Vector_cond1_7980	chr5	127610904	127611116	+	3.51194	NA	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6382	NM_133895	100561	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding
diff_RLAGL_Vector_cond1_8727	chr6	141328198	141328489	+	3.50935	NA	intron (NM_018779, intron 1 of 15)	Lx8|LINE|L1	-12210	NR_033555	100093700	Mm.483778	NR_033555	ENSMUSG00000107456	Gm10400	ENSMUSG00000072690	predicted gene 10400	ncRNA
diff_RLAGL_Vector_cond1_4312	chr17	22081082	22081299	+	3.50660	NA	Intergenic	CpG	84787	NM_177596	210853	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding
diff_RLAGL_Vector_cond1_7641	chr5	36374617	36374897	+	3.50625	NA	intron (NM_030889, intron 1 of 26)	L1MB5|LINE|L1	23382	NM_030889	81840	Mm.34113	NM_030889	ENSMUSG00000029093	Sorcs2	N28137|mKIAA1329	sortilin-related VPS10 domain containing receptor 2	protein-coding
diff_RLAGL_Vector_cond1_7693	chr5	46182073	46182464	+	3.50151	NA	Intergenic	Intergenic	-249859	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA
diff_RLAGL_Vector_cond1_5117	chr19	24174046	24174326	+	3.49927	NA	promoter-TSS (NM_001198985)	promoter-TSS (NM_001198985)	-46	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding
diff_RLAGL_Vector_cond1_4831	chr18	38296639	38296854	+	3.49861	NA	promoter-TSS (NM_001164621)	promoter-TSS (NM_001164621)	-59	NM_001164621	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding
diff_RLAGL_Vector_cond1_5225	chr19	59075585	59075869	+	3.49767	NA	5' UTR (NM_001114312, exon 1 of 17)	5' UTR (NM_001114312, exon 1 of 17)	342	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding
diff_RLAGL_Vector_cond1_9932	chr9	15357533	15357759	+	3.49628	NA	exon (NM_176976, exon 1 of 27)	exon (NM_176976, exon 1 of 27)	142	NM_176976	319675	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding
diff_RLAGL_Vector_cond1_2988	chr14	7824858	7825107	+	3.49347	NA	intron (NM_134080, intron 1 of 45)	intron (NM_134080, intron 1 of 45)	7025	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding
diff_RLAGL_Vector_cond1_5730	chr2	118034699	118034903	+	3.49300	NA	non-coding (NR_126479, exon 6 of 10)	non-coding (NR_126479, exon 6 of 10)	76401	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA
diff_RLAGL_Vector_cond1_3894	chr16	21204316	21204834	+	3.49160	NA	promoter-TSS (NM_010143)	promoter-TSS (NM_010143)	-220	NM_010143	13845	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding
diff_RLAGL_Vector_cond1_3531	chr15	36794280	36794547	+	3.48946	NA	5' UTR (NM_011740, exon 1 of 7)	5' UTR (NM_011740, exon 1 of 7)	125	NM_001253805	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding
diff_RLAGL_Vector_cond1_4576	chr17	71551857	71552075	+	3.48449	NA	promoter-TSS (NM_001142631)	promoter-TSS (NM_001142631)	-95	NM_001142631	70891	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding
diff_RLAGL_Vector_cond1_8951	chr7	44496327	44496527	+	3.47954	NA	promoter-TSS (NM_197991)	promoter-TSS (NM_197991)	86	NM_197991	69683	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding
diff_RLAGL_Vector_cond1_875	chr10	9801520	9801970	+	3.47919	NA	intron (NM_001081344, intron 16 of 25)	intron (NM_001081344, intron 16 of 25)	99295	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding
diff_RLAGL_Vector_cond1_6741	chr3	153852405	153852708	+	3.47897	NA	promoter-TSS (NR_040373)	promoter-TSS (NR_040373)	-132	NR_040373	72317	Mm.440147	NR_040373	ENSMUSG00000086438	Asb17os	2510003D18Rik	ankyrin repeat and SOCS box-containing 17, opposite strand	ncRNA
diff_RLAGL_Vector_cond1_4862	chr18	44828459	44828726	+	3.47895	NA	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-73	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_2540	chr13	10359955	10360207	+	3.47794	NA	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	722	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding
diff_RLAGL_Vector_cond1_610	chr1	160263052	160263289	+	3.47213	NA	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	32802	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA
diff_RLAGL_Vector_cond1_5580	chr2	79635571	79635868	+	3.47198	NA	exon (NM_080558, exon 1 of 18)	exon (NM_080558, exon 1 of 18)	294	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding
diff_RLAGL_Vector_cond1_9596	chr8	69063597	69063919	+	3.46996	NA	intron (NM_153054, intron 9 of 16)	intron (NM_153054, intron 9 of 16)	-24978	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding
diff_RLAGL_Vector_cond1_699	chr1	175936452	175936732	+	3.46737	NA	Intergenic	Intergenic	16263	NM_001290692	226720	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding
diff_RLAGL_Vector_cond1_623	chr1	162570510	162570834	+	3.46222	NA	promoter-TSS (NM_016796)	promoter-TSS (NM_016796)	-156	NM_016796	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding
diff_RLAGL_Vector_cond1_8303	chr6	47341441	47341672	+	3.46152	NA	Intergenic	Intergenic	97160	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
diff_RLAGL_Vector_cond1_9191	chr7	112428315	112428540	+	3.46096	NA	intron (NM_020606, intron 1 of 12)	CpG	721	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding
diff_RLAGL_Vector_cond1_5886	chr2	145219652	145219930	+	3.45964	NA	Intergenic	Intergenic	-22820	NM_053195	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding
diff_RLAGL_Vector_cond1_5045	chr19	3669078	3669373	+	3.45956	NA	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	17339	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding
diff_RLAGL_Vector_cond1_8115	chr5	149863283	149863508	+	3.45937	NA	intron (NR_045758, intron 3 of 3)	intron (NR_045758, intron 3 of 3)	15648	NR_045758	70969	Mm.78499	NR_045758	ENSMUSG00000107214	4930500F04Rik	4931407C17Rik	RIKEN cDNA 4930500F04 gene	ncRNA
diff_RLAGL_Vector_cond1_7129	chr4	94752510	94752797	+	3.45908	NA	intron (NM_001290549, intron 1 of 22)	intron (NM_001290549, intron 1 of 22)	13364	NM_013690	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding
diff_RLAGL_Vector_cond1_7185	chr4	106582433	106582647	+	3.45787	NA	intron (NM_053272, intron 6 of 8)	LTR16A|LTR|ERVL	21502	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding
diff_RLAGL_Vector_cond1_5787	chr2	131491734	131491976	+	3.45782	NA	promoter-TSS (NM_001177838)	promoter-TSS (NM_001177838)	-7	NM_001177838	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding
diff_RLAGL_Vector_cond1_4201	chr16	92904214	92904447	+	3.45463	NA	Intergenic	Intergenic	-78256	NM_001111022	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_2634	chr13	35677489	35677731	+	3.45292	NA	intron (NM_009881, intron 2 of 9)	intron (NM_009881, intron 2 of 9)	17748	NM_009881	12593	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding
diff_RLAGL_Vector_cond1_1280	chr10	100015629	100015885	+	3.45149	NA	promoter-TSS (NM_013598)	promoter-TSS (NM_013598)	-67	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding
diff_RLAGL_Vector_cond1_5660	chr2	103073784	103074000	+	3.44948	NA	promoter-TSS (NM_175094)	promoter-TSS (NM_175094)	217	NM_019735	56369	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding
diff_RLAGL_Vector_cond1_5880	chr2	144429174	144429479	+	3.44894	NA	Intergenic	Intergenic	-29954	NR_033459	668917	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	OTTMUSG00000003825|Zfp133	zinc finger protein 133, pseudogene	pseudo
diff_RLAGL_Vector_cond1_6471	chr3	95929043	95929269	+	3.44016	NA	promoter-TSS (NM_023210)	promoter-TSS (NM_023210)	-101	NM_001253758	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding
diff_RLAGL_Vector_cond1_3751	chr15	87624192	87624394	+	3.43964	NA	promoter-TSS (NM_134096)	promoter-TSS (NM_134096)	-937	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding
diff_RLAGL_Vector_cond1_2916	chr13	108044268	108044489	+	3.43814	NA	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-96	NM_001048250	75616	Mm.491164	NM_001048250		Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding
diff_RLAGL_Vector_cond1_6025	chr2	166805376	166805589	+	3.43565	NA	promoter-TSS (NM_001085495)	promoter-TSS (NM_001085495)	-99	NM_001085495	99371	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding
diff_RLAGL_Vector_cond1_3030	chr14	19708162	19708381	+	3.43535	NA	Intergenic	Intergenic	-42986	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding
diff_RLAGL_Vector_cond1_7402	chr4	141746660	141746895	+	3.43180	NA	5' UTR (NM_001081408, exon 1 of 7)	5' UTR (NM_001081408, exon 1 of 7)	102	NM_001081408	75986	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding
diff_RLAGL_Vector_cond1_8825	chr7	13009918	13010147	+	3.43032	NA	promoter-TSS (NM_001024699)	promoter-TSS (NM_001024699)	-232	NM_001024699	232879	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding
diff_RLAGL_Vector_cond1_1693	chr11	61855125	61855344	+	3.42536	NA	promoter-TSS (NM_013881)	promoter-TSS (NM_013881)	-142	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding
diff_RLAGL_Vector_cond1_1433	chr10	128058770	128059043	+	3.42357	NA	promoter-TSS (NM_019766)	promoter-TSS (NM_019766)	-76	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding
diff_RLAGL_Vector_cond1_2714	chr13	60177473	60177681	+	3.42355	NA	promoter-TSS (NM_008086)	promoter-TSS (NM_008086)	-42	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding
diff_RLAGL_Vector_cond1_2400	chr12	102877822	102878057	+	3.42308	NA	intron (NM_172806, intron 1 of 11)	CpG	467	NM_172806	238386	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding
diff_RLAGL_Vector_cond1_9754	chr8	106570516	106570732	+	3.41998	NA	Intergenic	MTD|LTR|ERVL-MaLR	-16519	NR_045470	68692	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA
diff_RLAGL_Vector_cond1_7628	chr5	33782749	33782950	+	3.41983	NA	promoter-TSS (NM_019694)	promoter-TSS (NM_019694)	-145	NM_019694	56384	Mm.260538	NM_019694		Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding
diff_RLAGL_Vector_cond1_6474	chr3	96697015	96697227	+	3.41718	NA	promoter-TSS (NM_001165949)	promoter-TSS (NM_001165949)	45	NM_001165949	229615	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding
diff_RLAGL_Vector_cond1_2598	chr13	24280863	24281355	+	3.41684	NA	promoter-TSS (NM_026825)	promoter-TSS (NM_026825)	-319	NM_026825	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Lrrc16a	1110037D04Rik|AI425970|CARMIL|D130057M20|Lrrc16	leucine rich repeat containing 16A	protein-coding
diff_RLAGL_Vector_cond1_1093	chr10	67549385	67549602	+	3.41343	NA	promoter-TSS (NM_001005419)	promoter-TSS (NM_001005419)	-538	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding
diff_RLAGL_Vector_cond1_8891	chr7	29505613	29505889	+	3.41341	NA	promoter-TSS (NM_001081028)	promoter-TSS (NM_001081028)	-291	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding
diff_RLAGL_Vector_cond1_10214	chr9	90251025	90251235	+	3.41294	NA	intron (NM_194334, intron 1 of 12)	L1MB5|LINE|L1	19639	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding
diff_RLAGL_Vector_cond1_5137	chr19	29805042	29805251	+	3.40875	NA	intron (NM_172836, intron 1 of 7)	CpG	863	NM_172836	240613	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	ENSMUSG00000048936|Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding
diff_RLAGL_Vector_cond1_772	chr1	186964115	186964388	+	3.40713	NA	Intergenic	Intergenic	-3165	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding
diff_RLAGL_Vector_cond1_6900	chr4	29152587	29152836	+	3.40388	NA	Intergenic	MamRep1527|LTR|LTR	339566	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
diff_RLAGL_Vector_cond1_2178	chr12	36157004	36157227	+	3.39938	NA	promoter-TSS (NM_025840)	promoter-TSS (NM_025840)	-9	NM_146033	217473	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding
diff_RLAGL_Vector_cond1_6720	chr3	149349459	149349690	+	3.39820	NA	Intergenic	AmnSINE1|SINE|Deu	74837	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
diff_RLAGL_Vector_cond1_3837	chr15	103035189	103035422	+	3.39729	NA	intron (NM_013553, intron 1 of 1)	intron (NM_013553, intron 1 of 1)	910	NM_013553	15423	Mm.1351	NM_013553	ENSMUSG00000075394	Hoxc4	Hox-3.5	homeobox C4	protein-coding
diff_RLAGL_Vector_cond1_800	chr1	191026260	191026487	+	3.39662	NA	promoter-TSS (NM_001313747)	promoter-TSS (NM_001313747)	-183	NM_198025	226844	Mm.134053	NM_198025	ENSMUSG00000066595	Mfsd7b	9630055N22Rik|FLVCR|Flvcr1	major facilitator superfamily domain containing 7B	protein-coding
diff_RLAGL_Vector_cond1_5246	chr2	3964477	3964683	+	3.39536	NA	Intergenic	Intergenic	176561	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA
diff_RLAGL_Vector_cond1_930	chr10	25192298	25192518	+	3.39311	NA	intron (NM_018747, intron 7 of 7)	intron (NM_018747, intron 7 of 7)	106755	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding
diff_RLAGL_Vector_cond1_10348	chr9	119981511	119981721	+	3.39167	NA	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	3042	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding
diff_RLAGL_Vector_cond1_2106	chr12	17266429	17266659	+	3.39108	NA	promoter-TSS (NM_027959)	promoter-TSS (NM_027959)	-51	NM_027959	71853	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding
diff_RLAGL_Vector_cond1_4821	chr18	36735195	36735438	+	3.38719	NA	intron (NM_028036, intron 1 of 11)	CpG	246	NM_028036	71983	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding
diff_RLAGL_Vector_cond1_3879	chr16	16871011	16871222	+	3.38669	NA	intron (NM_011624, intron 1 of 17)	intron (NM_011624, intron 1 of 17)	225	NM_011624	21976	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding
diff_RLAGL_Vector_cond1_5236	chr19	61116161	61116389	+	3.38515	NA	non-coding (NR_131956, exon 6 of 6)	non-coding (NR_131956, exon 6 of 6)	24565	NR_131954	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding
diff_RLAGL_Vector_cond1_8221	chr6	23966116	23966438	+	3.38053	NA	Intergenic	Intergenic	3783	NM_207022	387347	Mm.377909	NM_207022	ENSMUSG00000043865	Tas2r118	Gm465|T2R18|Tas2r16|Tas2r18|mGR18|mt2r40	taste receptor, type 2, member 118	protein-coding
diff_RLAGL_Vector_cond1_2079	chr12	12516955	12517259	+	3.37790	NA	Intergenic	Intergenic	-124632	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA
diff_RLAGL_Vector_cond1_9634	chr8	76899100	76899323	+	3.37736	NA	intron (NR_028579, intron 1 of 1)	GC_rich|Low_complexity|Low_complexity	962	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
diff_RLAGL_Vector_cond1_8226	chr6	24632186	24632406	+	3.37581	NA	TTS (NM_001167745)	TTS (NM_001167745)	32699	NM_028459	73178	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding
diff_RLAGL_Vector_cond1_2246	chr12	54656581	54656813	+	3.37535	NA	promoter-TSS (NM_134054)	promoter-TSS (NM_134054)	-125	NM_134054	104725	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding
diff_RLAGL_Vector_cond1_4808	chr18	34220854	34221132	+	3.37307	NA	promoter-TSS (NM_007462)	promoter-TSS (NM_007462)	9	NM_007462	11789	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding
diff_RLAGL_Vector_cond1_1885	chr11	101552571	101552803	+	3.37247	NA	promoter-TSS (NM_008676)	promoter-TSS (NM_008676)	33	NM_001252222	17966	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding
diff_RLAGL_Vector_cond1_2001	chr11	119091726	119092028	+	3.36983	NA	Intergenic	Intergenic	-5640	NM_007625	12418	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding
diff_RLAGL_Vector_cond1_8567	chr6	115134852	115135077	+	3.36648	NA	promoter-TSS (NM_001111015)	promoter-TSS (NM_001111015)	62	NM_013681	20965	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding
diff_RLAGL_Vector_cond1_7470	chr4	152008726	152008961	+	3.36213	NA	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	-48	NM_001033352	242785	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding
diff_RLAGL_Vector_cond1_10138	chr9	67485511	67485756	+	3.35789	NA	intron (NM_001081242, intron 1 of 57)	intron (NM_001081242, intron 1 of 57)	74070	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding
diff_RLAGL_Vector_cond1_7073	chr4	77425838	77426069	+	3.35462	NA	intron (NM_011211, intron 4 of 39)	intron (NM_011211, intron 4 of 39)	785942	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding
diff_RLAGL_Vector_cond1_8899	chr7	30804048	30804308	+	3.35434	NA	Intergenic	Intergenic	16273	NM_001033131	64661	Mm.268157	NM_001033131	ENSMUSG00000074199	Krtdap	Kdap|sk221	keratinocyte differentiation associated protein	protein-coding
diff_RLAGL_Vector_cond1_3112	chr14	47515036	47515245	+	3.35306	NA	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	42579	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding
diff_RLAGL_Vector_cond1_51	chr1	13305120	13305399	+	3.35021	NA	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	67170	NM_001302702	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding
diff_RLAGL_Vector_cond1_6334	chr3	60346468	60346676	+	3.34811	NA	Intergenic	RMER15|LTR|ERVL	-126258	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_9248	chr7	129591731	129591975	+	3.34778	NA	promoter-TSS (NM_172255)	promoter-TSS (NM_172255)	-10	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding
diff_RLAGL_Vector_cond1_9793	chr8	115150466	115150670	+	3.34760	NA	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	556326	NM_001025577	17132	Mm.275549	NM_001025577		Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog	protein-coding
diff_RLAGL_Vector_cond1_3582	chr15	51865545	51865767	+	3.34727	NA	promoter-TSS (NM_080635)	promoter-TSS (NM_080635)	-195	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
diff_RLAGL_Vector_cond1_9506	chr8	44963011	44963304	+	3.34706	NA	intron (NM_001081286, intron 1 of 25)	intron (NM_001081286, intron 1 of 25)	12949	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_6933	chr4	40181692	40181901	+	3.34607	NA	intron (NM_007386, intron 11 of 20)	intron (NM_007386, intron 11 of 20)	38531	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding
diff_RLAGL_Vector_cond1_3812	chr15	100228187	100228442	+	3.34503	NA	intron (NM_007497, intron 1 of 6)	CpG	455	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding
diff_RLAGL_Vector_cond1_3702	chr15	76170873	76171155	+	3.33957	NA	TTS (NM_001163549)	TTS (NM_001163549)	24696	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding
diff_RLAGL_Vector_cond1_1349	chr10	115251361	115251577	+	3.33844	NA	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	24	NM_025706	66687	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding
diff_RLAGL_Vector_cond1_2883	chr13	97546115	97546375	+	3.33587	NA	Intergenic	Intergenic	-13755	NR_046157	328314	Mm.138047	NR_046157		Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA
diff_RLAGL_Vector_cond1_1438	chr10	128376767	128377035	+	3.33324	NA	promoter-TSS (NM_172790)	promoter-TSS (NM_172790)	-223	NM_172790	237615	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding
diff_RLAGL_Vector_cond1_8538	chr6	108532544	108532772	+	3.32830	NA	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	42915	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA
diff_RLAGL_Vector_cond1_7762	chr5	67306798	67307015	+	3.32828	NA	promoter-TSS (NM_178651)	promoter-TSS (NM_178651)	-49	NM_001310629	109108	Mm.234455	NM_178651		Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding
diff_RLAGL_Vector_cond1_3868	chr16	13212930	13213179	+	3.32708	NA	Intergenic	Intergenic	-43427	NM_001122667	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding
diff_RLAGL_Vector_cond1_1158	chr10	79984936	79985157	+	3.32012	NA	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-716	NM_001003949	216157	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding
diff_RLAGL_Vector_cond1_206	chr1	60669013	60669236	+	3.31973	NA	Intergenic	Intergenic	-77264	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding
diff_RLAGL_Vector_cond1_4126	chr16	77103759	77103998	+	3.31970	NA	intron (NM_013918, intron 18 of 23)	intron (NM_013918, intron 18 of 23)	89809	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding
diff_RLAGL_Vector_cond1_8271	chr6	38433841	38434049	+	3.30889	NA	promoter-TSS (NM_177185)	promoter-TSS (NM_177185)	20	NM_177185	320538	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding
diff_RLAGL_Vector_cond1_219	chr1	64809201	64809421	+	3.29857	NA	intron (NM_001039493, intron 7 of 7)	intron (NM_001039493, intron 7 of 7)	-71561	NM_001042659	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled homolog 5 (Drosophila)	protein-coding
diff_RLAGL_Vector_cond1_1996	chr11	118476788	118477000	+	3.29583	NA	promoter-TSS (NM_172573)	promoter-TSS (NM_172573)	-66	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding
diff_RLAGL_Vector_cond1_763	chr1	185253027	185253248	+	3.29153	NA	intron (NM_001163754, intron 17 of 34)	intron (NM_001163754, intron 17 of 34)	10162	NR_035529	100316737		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA
diff_RLAGL_Vector_cond1_1392	chr10	121626305	121626508	+	3.28592	NA	promoter-TSS (NM_001081056)	promoter-TSS (NM_001081056)	-90	NM_001081056	73192	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding
diff_RLAGL_Vector_cond1_1728	chr11	70014944	70015221	+	3.28284	NA	intron (NM_017366, intron 2 of 19)	intron (NM_017366, intron 2 of 19)	346	NM_017366	11370	Mm.18630	NM_017366	ENSMUSG00000018574	Acadvl	vlcad	acyl-Coenzyme A dehydrogenase, very long chain	protein-coding
diff_RLAGL_Vector_cond1_8470	chr6	90538039	90538262	+	3.27375	NA	Intergenic	Intergenic	-12698	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding
diff_RLAGL_Vector_cond1_6407	chr3	79181310	79181534	+	3.24397	NA	Intergenic	Intergenic	-31497	NR_045502	70924	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA
diff_RLAGL_Vector_cond1_2369	chr12	91779141	91779360	+	3.19919	NA	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	7186	NM_175367	108800	Mm.23125	NM_175367		Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding
diff_RLAGL_Vector_cond1_1920	chr11	108352954	108353156	+	3.19013	NA	Intergenic	Intergenic	-9167	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding
diff_RLAGL_Vector_cond1_1574	chr11	30209578	30209816	+	3.14854	NA	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	10075	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding