Information for 2-ATTGGCGG (Motif 2)


Reverse Opposite:

p-value:1e-9
log p-value:-2.090e+01
Information Content per bp:1.486
Number of Target Sequences with motif96.0
Percentage of Target Sequences with motif56.80%
Number of Background Sequences with motif14461.4
Percentage of Background Sequences with motif33.85%
Average Position of motif in Targets473.4 +/- 326.3bp
Average Position of motif in Background504.8 +/- 398.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.84
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---ATTGGCGG------
NAGANTGGCGGGGNGNA

MA0567.1_ERF1/Jaspar

Match Rank:2
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:ATTGGCGG--
--TGGCGGCG

NtERF2(AP2/EREBP)/Nicotiana tabacum/AthaMap

Match Rank:3
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:ATTGGCGG--
---GGCGGCG

MA0283.1_CHA4/Jaspar

Match Rank:4
Score:0.78
Offset:3
Orientation:forward strand
Alignment:ATTGGCGG---
---GGCGGAGA

MA0410.1_UGA3/Jaspar

Match Rank:5
Score:0.77
Offset:2
Orientation:forward strand
Alignment:ATTGGCGG--
--CGGCGGGA

UME6(MacIsaac)/Yeast

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ATTGGCGG---
-TCGGCGGCTA

pho/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ATTGGCGG
AATGGC--

ABI4(1)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ATTGGCGG--
NGGGGCGGTG

MA0443.1_btd/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-ATTGGCGG-
AGGGGGCGGA

brk/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.71
Offset:2
Orientation:forward strand
Alignment:ATTGGCGG-
--TGGCGCT