Information for 4-TGACGTCA (Motif 3)


Reverse Opposite:

p-value:1e-7
log p-value:-1.796e+01
Information Content per bp:1.929
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif14.20%
Number of Background Sequences with motif1561.5
Percentage of Background Sequences with motif3.65%
Average Position of motif in Targets544.4 +/- 339.3bp
Average Position of motif in Background490.3 +/- 339.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0018.2_CREB1/Jaspar

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:TGACGTCA
TGACGTCA

Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--TGACGTCA
GATGACGTCA

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:3
Score:0.95
Offset:-3
Orientation:forward strand
Alignment:---TGACGTCA-
NGRTGACGTCAY

PB0004.1_Atf1_1/Jaspar

Match Rank:4
Score:0.95
Offset:-4
Orientation:forward strand
Alignment:----TGACGTCA----
ACGATGACGTCATCGA

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:5
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---TGACGTCA-
NRRTGACGTCAT

JunD(bZIP)/K562-JunD-ChIP-Seq/Homer

Match Rank:6
Score:0.93
Offset:-3
Orientation:reverse strand
Alignment:---TGACGTCA-
NGATGACGTCAT

CRE(bZIP)/Promoter/Homer

Match Rank:7
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---TGACGTCA-
CGGTGACGTCAC

PB0038.1_Jundm2_1/Jaspar

Match Rank:8
Score:0.92
Offset:-4
Orientation:reverse strand
Alignment:----TGACGTCA----
NCGATGACGTCATCGN

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-TGACGTCA---
ATGACGTCATCN

MA0286.1_CST6/Jaspar

Match Rank:10
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TGACGTCA-
TTACGTCAT