Information for 5-GAATTCGC (Motif 4)


Reverse Opposite:

p-value:1e-7
log p-value:-1.780e+01
Information Content per bp:1.782
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif19.53%
Number of Background Sequences with motif2816.7
Percentage of Background Sequences with motif6.59%
Average Position of motif in Targets551.0 +/- 289.7bp
Average Position of motif in Background512.1 +/- 368.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

byn/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GAATTCGC--
-AATTCGCAC

dl-B/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAATTCGC-
GGGAATTCCCC

MA0401.1_SWI4/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GAATTCGC--
--TTTCGCGT

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GAATTCGC---
NNNNTGAATTCANNNC

MA0325.1_LYS14/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GAATTCGC
CCGGAATT---

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GAATTCGC
NCTGGAATGC--

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GAATTCGC
CCWGGAATGY--

TEC1(MacIsaac)/Yeast

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAATTCGC
AGAATGTG-

STB1/STB1_YPD/1-SWI4,1-SWI6(Harbison)/Yeast

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAATTCGC----
--TTTCGCGTTT

shn-ZFP2/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAATTCGC-
GGGAATTCCCC