Information for 6-AATCGCCC (Motif 5)


Reverse Opposite:

p-value:1e-7
log p-value:-1.715e+01
Information Content per bp:1.800
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif34.32%
Number of Background Sequences with motif7239.7
Percentage of Background Sequences with motif16.94%
Average Position of motif in Targets512.2 +/- 250.4bp
Average Position of motif in Background505.9 +/- 351.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0122.1_Obox2/Jaspar

Match Rank:1
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------AATCGCCC---
ATAGTTAATCCCCCTCA

PH0123.1_Obox3/Jaspar

Match Rank:2
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------AATCGCCC---
ATAGTTAATCCCCCNNA

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.68
Offset:-7
Orientation:reverse strand
Alignment:-------AATCGCCC-
GNNAGCTAATCCCCCN

MA0038.1_Gfi1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AATCGCCC
CAAATCACTG

PB0143.1_Klf7_2/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AATCGCCC-----
AAGCATACGCCCAACTT

hkb/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AATCGCCC-
CAACGCCCA

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------AATCGCCC---
NTAGTTAATCCCCTTAN

btd/dmmpmm(Noyes)/fly

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AATCGCCC--
ATCCGCCCCC

pho/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AATCGCCC
AATGGC--

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AATCGCCC---
NTTGTTAATCCCTCTNN