Information for 7-GCGCGAAG (Motif 6)


Reverse Opposite:

p-value:1e-6
log p-value:-1.579e+01
Information Content per bp:1.818
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif26.04%
Number of Background Sequences with motif4907.6
Percentage of Background Sequences with motif11.49%
Average Position of motif in Targets463.9 +/- 310.8bp
Average Position of motif in Background512.8 +/- 466.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0541.1_EFL-1/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----GCGCGAAG--
CGCGCGCGCGAAATT

MA0374.1_RSC3/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GCGCGAAG
NNGCGCG---

MA0024.2_E2F1/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GCGCGAAG
CGGGCGGGAGG

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GCGCGAAG-
GGCGGGAAAH

MA0470.1_E2F4/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GCGCGAAG-
GGGCGGGAAGG

SUT1?/SacCer-Promoters/Homer

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCGCGAAG
GCGCGGGG

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:7
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GCGCGAAG--
TGGCGGGAAAHB

XBP1/Literature(Harbison)/Yeast

Match Rank:8
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GCGCGAAG
-CTCGAAG

MA0368.1_RIM101/Jaspar

Match Rank:9
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCGCGAAG
-CGCCAAG

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCGCGAAG
CWGGCGGGAA-