Information for 9-CATGCCAA (Motif 8)


Reverse Opposite:

p-value:1e-4
log p-value:-9.813e+00
Information Content per bp:1.530
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif8.28%
Number of Background Sequences with motif1007.9
Percentage of Background Sequences with motif2.36%
Average Position of motif in Targets516.1 +/- 452.3bp
Average Position of motif in Background500.2 +/- 316.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:CATGCCAA
--TGCCAA

RIM101/Literature(Harbison)/Yeast

Match Rank:2
Score:0.80
Offset:2
Orientation:forward strand
Alignment:CATGCCAA-
--TGCCAAG

RIM101(MacIsaac)/Yeast

Match Rank:3
Score:0.80
Offset:2
Orientation:forward strand
Alignment:CATGCCAA-
--TGCCAAG

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CATGCCAA------
ACTATGCCAACCTACC

AtLEC2(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CATGCCAA
TCCATGCAAA

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CATGCCAA-
-TTGCCAAG

MA0581.1_LEC2/Jaspar

Match Rank:7
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CATGCCAA-
TGCATGCACAT

MA0368.1_RIM101/Jaspar

Match Rank:8
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CATGCCAA-
--CGCCAAG

MA0313.1_HAP2/Jaspar

Match Rank:9
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:CATGCCAA
---ACCAA

MA0507.1_POU2F2/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CATGCCAA----
ATATGCAAATNNN