Information for 1-GTGCGATT (Motif 1)


Reverse Opposite:

p-value:1e-8
log p-value:-2.043e+01
Information Content per bp:1.919
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif931.5
Percentage of Background Sequences with motif2.17%
Average Position of motif in Targets383.2 +/- 199.2bp
Average Position of motif in Background524.1 +/- 394.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

byn/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GTGCGATT-
GTGCGAATT

byn/dmmpmm(Bigfoot)/fly

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GTGCGATT
ANGTGCGA--

CHA4(MacIsaac)/Yeast

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GTGCGATT--
-TGCGATGAG

pho/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GTGCGATT
--GCCATT

MA0038.1_Gfi1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTGCGATT--
CNGTGATTTN

byn/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GTGCGATT
AAGTGCGA--

MA0242.1_run::Bgb/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTGCGATT-
TTGCGGTTA

PH0122.1_Obox2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTGCGATT------
TGAGGGGGATTAACTAT

PH0123.1_Obox3/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTGCGATT------
TGAGGGGGATTAACTAT

bcd/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GTGCGATT---
--NGGATTANN