Information for 2-TTCGCTTA (Motif 2)


Reverse Opposite:

p-value:1e-7
log p-value:-1.760e+01
Information Content per bp:1.805
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif36.92%
Number of Background Sequences with motif4582.3
Percentage of Background Sequences with motif10.67%
Average Position of motif in Targets542.5 +/- 322.2bp
Average Position of motif in Background510.6 +/- 384.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0401.1_SWI4/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTCGCTTA
TTTCGCGT-

MA0051.1_IRF2/Jaspar

Match Rank:2
Score:0.70
Offset:-8
Orientation:reverse strand
Alignment:--------TTCGCTTA--
GTTTTGCTTTCACTTTCC

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TTCGCTTA-
ACTTTCACTTTC

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TTCGCTTA-
RSTTTCRSTTTC

PB0037.1_Isgf3g_1/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTCGCTTA--
TNAGTTTCGATTTTN

MA0537.1_BLMP-1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTCGCTTA-
TTTTCNCTTTT

PB0035.1_Irf5_1/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TTCGCTTA--
NTGGTTTCGGTTNNN

SWI4(MacIsaac)/Yeast

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTCGCTTA
TTTTCGCGT-

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTCGCTTA-
ACTTTCACTTTC

STB1/STB1_YPD/1-SWI4,1-SWI6(Harbison)/Yeast

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTCGCTTA-
TTTCGCGTTT