Information for 3-GCCGTTAC (Motif 3)


Reverse Opposite:

p-value:1e-7
log p-value:-1.704e+01
Information Content per bp:1.808
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif36.92%
Number of Background Sequences with motif4716.3
Percentage of Background Sequences with motif10.98%
Average Position of motif in Targets349.8 +/- 244.2bp
Average Position of motif in Background505.8 +/- 380.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ovo/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.82
Offset:1
Orientation:forward strand
Alignment:GCCGTTAC-
-CCGTTACA

ovo/dmmpmm(Bigfoot)/fly

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCCGTTAC
-CCGTTA-

ovo/dmmpmm(Down)/fly

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GCCGTTAC----
-CCGTTACTTTT

MA0126.1_ovo/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCCGTTAC-
ACNGTTACT

MA0239.1_prd/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCCGTTAC-
ACNGTTACT

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:6
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GCCGTTAC
GGCVGTTR-

ovo/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCCGTTAC-
ACNGTTACT

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:8
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GCCGTTAC
BRRCVGTTDN

ovo/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCCGTTAC
ACCGTTA-

pho/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCCGTTAC
GCCATT--