Information for 4-GAGGCGCG (Motif 4)


Reverse Opposite:

p-value:1e-4
log p-value:-9.339e+00
Information Content per bp:1.906
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif18.46%
Number of Background Sequences with motif2163.9
Percentage of Background Sequences with motif5.04%
Average Position of motif in Targets656.6 +/- 383.9bp
Average Position of motif in Background501.8 +/- 442.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0374.1_RSC3/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GAGGCGCG
-NNGCGCG

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GAGGCGCG--
--GGCGCGCT

MA0375.1_RSC30/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GAGGCGCG--
--CGCGCGCG

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GAGGCGCG----
NAVGCGCGTGDD

PB0008.1_E2F2_1/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GAGGCGCG----
ATAAAGGCGCGCGAT

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:6
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GAGGCGCG---
---GCGCGCTA

SWI6(MacIsaac)/Yeast

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GAGGCGCG
GACGCG--

PB0095.1_Zfp161_1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAGGCGCG-------
TGGCGCGCGCGCCTGA

MA0516.1_SP2/Jaspar

Match Rank:9
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGCGCG--
GGGNGGGGGCGGGGC

PB0009.1_E2F3_1/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GAGGCGCG----
ATAAGGGCGCGCGAT