Information for 5-AGGGAGGG (Motif 5)


Reverse Opposite:

p-value:1e-3
log p-value:-8.918e+00
Information Content per bp:1.935
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif43.08%
Number of Background Sequences with motif9510.0
Percentage of Background Sequences with motif22.14%
Average Position of motif in Targets388.9 +/- 269.2bp
Average Position of motif in Background509.8 +/- 370.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.68
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0599.1_KLF5/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:AGGGAGGG--
GGGGNGGGGC

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGGGAGGG-
-GGGGGGGG

MA0079.3_SP1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGGGAGGG--
GGGGGCGGGGC

PB0107.1_Ascl2_2/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AGGGAGGG-----
NATNGGGNGGGGANAN

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGGAGGG--
DGGGYGKGGC

MA0039.2_Klf4/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGGAGGG--
TGGGTGGGGC

PB0167.1_Sox13_2/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AGGGAGGG-----
GTATTGGGTGGGTAATT

MSN2/MSN2_H2O2Hi/1-MSN2(Harbison)/Yeast

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGGGAGGG
AAGGGGCGG

MA0598.1_EHF/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AGGGAGGG
CAGGAAGG-

MA0471.1_E2F6/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGGGAGGG----
-GGGCGGGAAGG