Information for 6-GTGTGTGT (Motif 6)


Reverse Opposite:

p-value:1e-2
log p-value:-4.735e+00
Information Content per bp:1.963
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif26.15%
Number of Background Sequences with motif6154.8
Percentage of Background Sequences with motif14.33%
Average Position of motif in Targets465.7 +/- 300.7bp
Average Position of motif in Background518.8 +/- 330.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: CA-repeat

Match Rank:1
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-GTGTGTGT-
TGTGTGTGTG

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----GTGTGTGT----
NNGCGTGTGTGCNGCN

MA0538.1_DAF-12/Jaspar

Match Rank:3
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----GTGTGTGT---
GTGTGTGTGTGCGTG

PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GTGTGTGT
KTGTTTGC

MET31(MacIsaac)/Yeast

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GTGTGTGT-
-GGTGTGGC

MA0270.1_AFT2/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GTGTGTGT
GGGGTGTG-

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GTGTGTGT--
NTGGGTGTGGCC

RAP1(MacIsaac)/Yeast

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTGTGTGT--
GTGTATGGGTGT

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GTGTGTGT----
NNNNTTGTGTGCTTNN

MA0472.1_EGR2/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GTGTGTGT---
GTGCGTGGGCGGGNG