| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.421e+00 | 1.0000 | 11.0 | 16.92% | 2941.3 | 6.85% | motif file (matrix) | |
| 2 | | ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer | 1e-2 | -5.372e+00 | 1.0000 | 18.0 | 27.69% | 6280.7 | 14.62% | motif file (matrix) | |
| 3 | | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.733e+00 | 1.0000 | 17.0 | 26.15% | 6155.4 | 14.33% | motif file (matrix) | |
| 4 | | Initiator/Drosophila-Promoters/Homer | 1e-2 | -4.677e+00 | 1.0000 | 50.0 | 76.92% | 26797.9 | 62.40% | motif file (matrix) |