| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-9 | -2.221e+01 | 0.0000 | 14.0 | 8.28% | 394.6 | 0.83% | motif file (matrix) |
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| 2 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-8 | -1.980e+01 | 0.0000 | 19.0 | 11.24% | 968.1 | 2.04% | motif file (matrix) |
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| 3 |  | p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer | 1e-2 | -6.819e+00 | 0.0722 | 5.0 | 2.96% | 214.3 | 0.45% | motif file (matrix) |
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| 4 |  | p53(p53)/Saos-p53-ChIP-Seq/Homer | 1e-2 | -6.819e+00 | 0.0722 | 5.0 | 2.96% | 214.3 | 0.45% | motif file (matrix) |
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| 5 |  | Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -5.019e+00 | 0.3492 | 56.0 | 33.14% | 11592.1 | 24.42% | motif file (matrix) |
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| 6 |  | p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-2 | -4.696e+00 | 0.4020 | 10.0 | 5.92% | 1161.1 | 2.45% | motif file (matrix) |
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