Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4865)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44443)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-196	-4.516e+02	0.0000	307.0	6.31%	271.1	0.61%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-131	-3.026e+02	0.0000	328.0	6.74%	544.0	1.22%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-89	-2.066e+02	0.0000	1940.0	39.86%	11794.2	26.55%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-80	-1.852e+02	0.0000	2267.0	46.58%	14821.6	33.37%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-55	-1.271e+02	0.0000	723.0	14.86%	3582.2	8.07%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-48	-1.106e+02	0.0000	1258.0	25.85%	7749.9	17.45%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-37	-8.721e+01	0.0000	1115.0	22.91%	7007.1	15.78%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-37	-8.569e+01	0.0000	1114.0	22.89%	7025.9	15.82%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-31	-7.188e+01	0.0000	814.0	16.72%	4932.9	11.11%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-26	-6.087e+01	0.0000	1166.0	23.96%	7917.5	17.83%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-25	-5.846e+01	0.0000	1253.0	25.74%	8683.1	19.55%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-25	-5.775e+01	0.0000	1610.0	33.08%	11690.6	26.32%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-22	-5.235e+01	0.0000	602.0	12.37%	3641.9	8.20%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-20	-4.813e+01	0.0000	1651.0	33.92%	12305.8	27.71%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-17	-4.117e+01	0.0000	542.0	11.14%	3377.1	7.60%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-16	-3.912e+01	0.0000	2272.0	46.68%	18057.3	40.66%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-16	-3.687e+01	0.0000	2236.0	45.94%	17817.9	40.12%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-15	-3.501e+01	0.0000	67.0	1.38%	190.8	0.43%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-13	-3.133e+01	0.0000	69.0	1.42%	217.0	0.49%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-12	-2.773e+01	0.0000	426.0	8.75%	2741.7	6.17%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-11	-2.627e+01	0.0000	345.0	7.09%	2149.7	4.84%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-10	-2.530e+01	0.0000	451.0	9.27%	2987.1	6.73%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-8	-2.044e+01	0.0000	397.0	8.16%	2673.4	6.02%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-8	-1.995e+01	0.0000	153.0	3.14%	837.9	1.89%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-7	-1.814e+01	0.0000	495.0	10.17%	3519.1	7.92%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-7	-1.790e+01	0.0000	614.0	12.62%	4503.6	10.14%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-7	-1.772e+01	0.0000	524.0	10.77%	3769.0	8.49%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-7	-1.738e+01	0.0000	409.0	8.40%	2845.3	6.41%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-7	-1.676e+01	0.0000	73.0	1.50%	332.5	0.75%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-7	-1.662e+01	0.0000	657.0	13.50%	4904.0	11.04%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-7	-1.620e+01	0.0000	319.0	6.55%	2158.0	4.86%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-7	-1.615e+01	0.0000	401.0	8.24%	2814.9	6.34%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-6	-1.558e+01	0.0000	523.0	10.75%	3827.9	8.62%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-6	-1.497e+01	0.0000	70.0	1.44%	329.3	0.74%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-6	-1.444e+01	0.0000	519.0	10.66%	3832.2	8.63%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-6	-1.433e+01	0.0000	356.0	7.31%	2502.9	5.64%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-5	-1.349e+01	0.0000	129.0	2.65%	757.5	1.71%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-5	-1.345e+01	0.0000	515.0	10.58%	3833.3	8.63%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-5	-1.271e+01	0.0000	105.0	2.16%	595.8	1.34%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-5	-1.220e+01	0.0000	287.0	5.90%	2006.4	4.52%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-5	-1.207e+01	0.0000	1394.0	28.64%	11481.4	25.85%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-5	-1.182e+01	0.0000	264.0	5.42%	1833.0	4.13%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-5	-1.159e+01	0.0001	966.0	19.85%	7759.0	17.47%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-4	-1.131e+01	0.0001	630.0	12.94%	4885.9	11.00%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-4	-1.129e+01	0.0001	852.0	17.51%	6788.9	15.29%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-4	-1.072e+01	0.0001	64.0	1.31%	333.5	0.75%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-4	-1.066e+01	0.0001	170.0	3.49%	1119.2	2.52%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-4	-1.052e+01	0.0001	301.0	6.18%	2168.3	4.88%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-4	-1.051e+01	0.0001	497.0	10.21%	3794.2	8.54%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-4	-1.032e+01	0.0002	838.0	17.22%	6717.7	15.12%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-4	-1.024e+01	0.0002	754.0	15.49%	5996.4	13.50%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-9.850e+00	0.0003	112.0	2.30%	692.1	1.56%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-4	-9.801e+00	0.0003	153.0	3.14%	1006.3	2.27%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-4	-9.576e+00	0.0003	104.0	2.14%	637.7	1.44%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-4	-9.507e+00	0.0004	255.0	5.24%	1825.8	4.11%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-4	-9.247e+00	0.0005	749.0	15.39%	6005.9	13.52%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-3	-8.929e+00	0.0006	99.0	2.03%	611.2	1.38%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-3	-8.787e+00	0.0007	721.0	14.81%	5788.2	13.03%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-3	-8.685e+00	0.0008	737.0	15.14%	5932.2	13.36%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-3	-8.668e+00	0.0008	105.0	2.16%	661.4	1.49%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-3	-8.656e+00	0.0008	702.0	14.42%	5631.5	12.68%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-8.489e+00	0.0009	29.0	0.60%	125.0	0.28%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-8.408e+00	0.0009	113.0	2.32%	727.7	1.64%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-3	-8.362e+00	0.0010	69.0	1.42%	399.2	0.90%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-8.235e+00	0.0011	313.0	6.43%	2344.8	5.28%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-8.221e+00	0.0011	241.0	4.95%	1751.1	3.94%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-8.124e+00	0.0012	919.0	18.88%	7550.9	17.00%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-3	-7.889e+00	0.0015	256.0	5.26%	1885.3	4.24%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-3	-7.881e+00	0.0015	32.0	0.66%	149.5	0.34%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-3	-7.531e+00	0.0020	43.0	0.88%	226.1	0.51%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-3	-7.493e+00	0.0021	10.0	0.21%	25.2	0.06%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-7.379e+00	0.0023	241.0	4.95%	1779.9	4.01%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-7.364e+00	0.0023	812.0	16.68%	6663.9	15.00%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-3	-7.076e+00	0.0030	92.0	1.89%	593.6	1.34%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3	-6.945e+00	0.0034	341.0	7.01%	2630.6	5.92%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-6.769e+00	0.0040	538.0	11.05%	4320.2	9.73%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-6.648e+00	0.0044	137.0	2.81%	956.2	2.15%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-2	-6.634e+00	0.0044	426.0	8.75%	3366.0	7.58%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-6.559e+00	0.0047	660.0	13.56%	5389.5	12.13%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-6.343e+00	0.0058	53.0	1.09%	313.3	0.71%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-6.241e+00	0.0064	131.0	2.69%	919.7	2.07%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-5.845e+00	0.0093	241.0	4.95%	1836.3	4.13%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2	-5.823e+00	0.0094	802.0	16.48%	6681.1	15.04%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-5.740e+00	0.0101	46.0	0.95%	271.7	0.61%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-5.620e+00	0.0113	238.0	4.89%	1820.9	4.10%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.596e+00	0.0114	42.0	0.86%	244.6	0.55%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-5.501e+00	0.0124	713.0	14.65%	5923.4	13.34%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-5.383e+00	0.0138	11.0	0.23%	39.4	0.09%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-5.361e+00	0.0139	304.0	6.25%	2389.9	5.38%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-5.337e+00	0.0141	204.0	4.19%	1547.6	3.48%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.168e+00	0.0165	27.0	0.55%	143.1	0.32%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-2	-5.116e+00	0.0172	24.0	0.49%	123.7	0.28%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-5.030e+00	0.0186	43.0	0.88%	260.2	0.59%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-5.026e+00	0.0186	203.0	4.17%	1551.7	3.49%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-2	-4.866e+00	0.0214	509.0	10.46%	4184.8	9.42%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-2	-4.818e+00	0.0222	1000.0	20.55%	8514.8	19.17%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-2	-4.754e+00	0.0235	695.0	14.28%	5821.4	13.11%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-4.741e+00	0.0235	332.0	6.82%	2660.7	5.99%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-4.687e+00	0.0246	110.0	2.26%	794.6	1.79%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-4.674e+00	0.0246	181.0	3.72%	1381.1	3.11%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-4.671e+00	0.0246	392.0	8.05%	3181.9	7.16%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-4.645e+00	0.0249	115.0	2.36%	836.0	1.88%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-4.477e+00	0.0291	281.0	5.77%	2237.3	5.04%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-4.418e+00	0.0306	180.0	3.70%	1383.8	3.12%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-4.396e+00	0.0310	1026.0	21.08%	8785.6	19.78%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-4.379e+00	0.0312	293.0	6.02%	2345.4	5.28%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-4.290e+00	0.0338	858.0	17.63%	7301.6	16.44%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-4.255e+00	0.0347	472.0	9.70%	3903.8	8.79%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-4.243e+00	0.0348	32.0	0.66%	191.7	0.43%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.198e+00	0.0361	253.0	5.20%	2012.5	4.53%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-4.183e+00	0.0363	173.0	3.55%	1334.4	3.00%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-4.174e+00	0.0363	133.0	2.73%	1000.5	2.25%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-4.163e+00	0.0364	434.0	8.92%	3578.4	8.06%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-4.109e+00	0.0380	212.0	4.36%	1667.3	3.75%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-4.088e+00	0.0385	31.0	0.64%	186.7	0.42%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-4.039e+00	0.0401	59.0	1.21%	402.3	0.91%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.901e+00	0.0456	707.0	14.53%	5999.0	13.51%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.578e+00	0.0625	305.0	6.27%	2496.0	5.62%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.473e+00	0.0688	61.0	1.25%	432.7	0.97%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.452e+00	0.0697	133.0	2.73%	1028.3	2.32%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-3.428e+00	0.0708	56.0	1.15%	394.0	0.89%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-3.423e+00	0.0708	144.0	2.96%	1122.9	2.53%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.407e+00	0.0711	72.0	1.48%	523.3	1.18%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-3.236e+00	0.0837	44.0	0.90%	302.2	0.68%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.195e+00	0.0865	471.0	9.68%	3975.9	8.95%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.046e+00	0.0997	357.0	7.34%	2985.4	6.72%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.031e+00	0.1003	248.0	5.10%	2035.7	4.58%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-2.930e+00	0.1101	508.0	10.44%	4325.3	9.74%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.835e+00	0.1202	138.0	2.84%	1098.9	2.47%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-2.804e+00	0.1230	261.0	5.36%	2163.5	4.87%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-2.763e+00	0.1272	226.0	4.64%	1861.6	4.19%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.738e+00	0.1294	60.0	1.23%	445.9	1.00%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.705e+00	0.1327	43.0	0.88%	307.2	0.69%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.687e+00	0.1341	265.0	5.44%	2206.2	4.97%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.648e+00	0.1384	141.0	2.90%	1133.4	2.55%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.600e+00	0.1442	135.0	2.77%	1084.6	2.44%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.545e+00	0.1512	41.0	0.84%	295.7	0.67%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.544e+00	0.1512	476.0	9.78%	4078.7	9.18%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.530e+00	0.1513	254.0	5.22%	2121.0	4.78%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.457e+00	0.1615	10.0	0.21%	55.8	0.13%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-2.434e+00	0.1641	276.0	5.67%	2321.4	5.23%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-2.400e+00	0.1686	681.0	13.99%	5920.7	13.33%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.283e+00	0.1882	233.0	4.79%	1955.2	4.40%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.260e+00	0.1913	163.0	3.35%	1345.6	3.03%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.245e+00	0.1928	292.0	6.00%	2477.0	5.58%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.194e+00	0.2016	51.0	1.05%	388.7	0.88%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.147e+00	0.2098	442.0	9.08%	3816.9	8.59%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.140e+00	0.2099	345.0	7.09%	2955.3	6.65%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.136e+00	0.2099	97.0	1.99%	781.4	1.76%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.129e+00	0.2099	1662.0	34.15%	14808.8	33.34%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.070e+00	0.2206	156.0	3.21%	1296.1	2.92%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.040e+00	0.2259	473.0	9.72%	4104.9	9.24%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.962e+00	0.2426	313.0	6.43%	2688.7	6.05%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.852e+00	0.2689	62.0	1.27%	494.2	1.11%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.841e+00	0.2702	516.0	10.60%	4512.8	10.16%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.797e+00	0.2806	462.0	9.49%	4034.6	9.08%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.787e+00	0.2817	143.0	2.94%	1201.4	2.70%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.737e+00	0.2940	84.0	1.73%	689.9	1.55%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.714e+00	0.2992	388.0	7.97%	3382.3	7.62%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.654e+00	0.3157	125.0	2.57%	1052.5	2.37%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.615e+00	0.3262	1105.0	22.70%	9856.4	22.19%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.596e+00	0.3302	364.0	7.48%	3181.6	7.16%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.553e+00	0.3427	268.0	5.51%	2328.0	5.24%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.404e+00	0.3952	130.0	2.67%	1114.8	2.51%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.370e+00	0.4065	357.0	7.34%	3146.9	7.09%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.334e+00	0.4189	164.0	3.37%	1422.8	3.20%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.318e+00	0.4231	559.0	11.49%	4973.5	11.20%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.260e+00	0.4458	194.0	3.99%	1697.7	3.82%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.246e+00	0.4492	12.0	0.25%	90.2	0.20%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.230e+00	0.4539	78.0	1.60%	666.4	1.50%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.138e+00	0.4945	638.0	13.11%	5719.0	12.88%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.107e+00	0.5074	428.0	8.79%	3824.1	8.61%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.091e+00	0.5127	738.0	15.16%	6636.0	14.94%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.083e+00	0.5136	44.0	0.90%	374.8	0.84%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.060e+00	0.5225	20.0	0.41%	164.2	0.37%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.032e+00	0.5345	92.0	1.89%	805.5	1.81%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.019e+00	0.5385	33.0	0.68%	280.9	0.63%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-9.802e-01	0.5565	108.0	2.22%	953.7	2.15%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-9.104e-01	0.5934	770.0	15.82%	6966.8	15.69%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-8.685e-01	0.6154	176.0	3.62%	1579.5	3.56%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-8.403e-01	0.6295	136.0	2.79%	1220.3	2.75%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-8.268e-01	0.6345	36.0	0.74%	317.4	0.71%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-8.122e-01	0.6403	333.0	6.84%	3013.6	6.79%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.786e-01	0.6587	84.0	1.73%	755.1	1.70%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-7.571e-01	0.6693	1033.0	21.22%	9403.2	21.17%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-7.366e-01	0.6795	15.0	0.31%	132.2	0.30%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.122e-01	0.6925	217.0	4.46%	1974.6	4.45%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.070e-01	0.6925	49.0	1.01%	443.6	1.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.884e-01	0.7017	7.0	0.14%	61.1	0.14%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-6.604e-01	0.7179	286.0	5.88%	2613.4	5.88%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.159e-01	0.7466	307.0	6.31%	2814.6	6.34%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.061e-01	0.7500	300.0	6.16%	2752.9	6.20%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.789e-01	0.7667	136.0	2.79%	1254.4	2.82%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.777e-01	0.7667	2398.0	49.27%	21928.2	49.37%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.719e-01	0.7667	152.0	3.12%	1402.5	3.16%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.679e-01	0.7667	5.0	0.10%	46.6	0.11%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.348e-01	0.7850	86.0	1.77%	800.3	1.80%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.146e-01	0.7970	198.0	4.07%	1835.1	4.13%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.095e-01	0.7970	73.0	1.50%	683.7	1.54%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.916e-01	0.8034	30.0	0.62%	285.6	0.64%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.916e-01	0.8034	30.0	0.62%	285.6	0.64%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.841e-01	0.8054	170.0	3.49%	1583.0	3.56%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.840e-01	0.8054	245.0	5.03%	2274.5	5.12%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.711e-01	0.8079	250.0	5.14%	2323.5	5.23%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-4.646e-01	0.8093	413.0	8.49%	3824.2	8.61%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.486e-01	0.8183	41.0	0.84%	392.0	0.88%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.400e-01	0.8214	704.0	14.46%	6504.1	14.64%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.274e-01	0.8278	31.0	0.64%	300.8	0.68%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.180e-01	0.8316	27.0	0.55%	263.1	0.59%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-4.140e-01	0.8316	334.0	6.86%	3112.4	7.01%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.011e-01	0.8378	83.0	1.71%	791.4	1.78%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.996e-01	0.8378	22.0	0.45%	217.6	0.49%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-3.766e-01	0.8505	35.0	0.72%	343.4	0.77%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.756e-01	0.8505	72.0	1.48%	692.9	1.56%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-3.711e-01	0.8505	134.0	2.75%	1272.4	2.86%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.468e-01	0.8641	73.0	1.50%	706.8	1.59%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.420e-01	0.8642	204.0	4.19%	1930.9	4.35%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.386e-01	0.8642	149.0	3.06%	1419.1	3.20%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.212e-01	0.8743	4.0	0.08%	45.3	0.10%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.048e-01	0.8847	1241.0	25.50%	11498.9	25.89%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.933e-01	0.8909	140.0	2.88%	1346.2	3.03%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.849e-01	0.8944	109.0	2.24%	1057.6	2.38%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.839e-01	0.8944	131.0	2.69%	1264.1	2.85%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.377e-01	0.9293	116.0	2.38%	1135.1	2.56%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.305e-01	0.9318	116.0	2.38%	1138.0	2.56%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.076e-01	0.9491	215.0	4.42%	2077.2	4.68%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.939e-01	0.9580	33.0	0.68%	349.6	0.79%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.317e-01	1.0000	71.0	1.46%	737.2	1.66%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.282e-01	1.0000	326.0	6.70%	3162.9	7.12%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.892e-02	1.0000	124.0	2.55%	1279.0	2.88%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.971e-02	1.0000	83.0	1.71%	885.0	1.99%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.444e-02	1.0000	261.0	5.36%	2605.8	5.87%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.000e-02	1.0000	24.0	0.49%	293.6	0.66%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.010e-02	1.0000	145.0	2.98%	1507.6	3.39%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.682e-02	1.0000	32.0	0.66%	384.3	0.87%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.954e-02	1.0000	52.0	1.07%	596.9	1.34%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.736e-02	1.0000	54.0	1.11%	629.5	1.42%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.440e-02	1.0000	32.0	0.66%	402.3	0.91%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.034e-02	1.0000	8.0	0.16%	135.4	0.30%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-9.747e-03	1.0000	290.0	5.96%	3010.8	6.78%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-8.058e-03	1.0000	549.0	11.28%	5505.6	12.40%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.907e-03	1.0000	12.0	0.25%	200.4	0.45%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.270e-03	1.0000	341.0	7.01%	3554.5	8.00%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.952e-03	1.0000	53.0	1.09%	685.6	1.54%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.487e-03	1.0000	99.0	2.03%	1193.6	2.69%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.352e-03	1.0000	523.0	10.75%	5382.7	12.12%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-6.230e-04	1.0000	191.0	3.92%	2168.1	4.88%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.380e-04	1.0000	56.0	1.15%	767.8	1.73%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.050e-04	1.0000	379.0	7.79%	4090.8	9.21%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.790e-04	1.0000	65.0	1.34%	889.1	2.00%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.340e-04	1.0000	459.0	9.43%	4896.0	11.02%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-6.800e-05	1.0000	1560.0	32.05%	15381.5	34.63%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.900e-05	1.0000	654.0	13.44%	6857.0	15.44%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.100e-05	1.0000	181.0	3.72%	2177.0	4.90%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-4.000e-06	1.0000	295.0	6.06%	3421.2	7.70%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.000e-06	1.0000	1324.0	27.20%	13414.3	30.20%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-0.000e+00	1.0000	113.0	2.32%	1595.4	3.59%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-0.000e+00	1.0000	45.0	0.92%	829.8	1.87%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-0.000e+00	1.0000	25.0	0.51%	710.8	1.60%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	291.0	5.98%	3983.2	8.97%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	535.0	10.99%	6826.9	15.37%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	696.0	14.30%	8513.1	19.17%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	183.0	3.76%	3158.0	7.11%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	198.0	4.07%	3565.5	8.03%