Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 5269)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44214)	% of Background Sequences with Motif
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-200	-4.624e+02	0.0000	2138.0	40.58%	9718.2	21.98%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-183	-4.215e+02	0.0000	1328.0	25.21%	4854.7	10.98%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-171	-3.956e+02	0.0000	1496.0	28.40%	6020.5	13.62%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-166	-3.832e+02	0.0000	1491.0	28.30%	6073.7	13.74%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-156	-3.593e+02	0.0000	939.0	17.82%	3028.9	6.85%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-152	-3.501e+02	0.0000	1586.0	30.11%	6913.8	15.64%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-125	-2.893e+02	0.0000	706.0	13.40%	2155.3	4.87%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-123	-2.847e+02	0.0000	2576.0	48.90%	14623.4	33.08%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-104	-2.396e+02	0.0000	3343.0	63.46%	21474.9	48.57%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-93	-2.146e+02	0.0000	955.0	18.13%	3993.4	9.03%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-90	-2.089e+02	0.0000	2838.0	53.87%	17696.4	40.03%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-89	-2.064e+02	0.0000	616.0	11.69%	2100.5	4.75%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-87	-2.005e+02	0.0000	515.0	9.78%	1605.5	3.63%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-67	-1.562e+02	0.0000	522.0	9.91%	1879.4	4.25%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-61	-1.414e+02	0.0000	2735.0	51.92%	17935.0	40.57%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-47	-1.094e+02	0.0000	1165.0	22.11%	6452.3	14.59%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-46	-1.065e+02	0.0000	724.0	13.74%	3492.2	7.90%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-45	-1.042e+02	0.0000	319.0	6.06%	1091.2	2.47%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-44	-1.026e+02	0.0000	977.0	18.55%	5232.0	11.83%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-37	-8.663e+01	0.0000	510.0	9.68%	2329.1	5.27%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-36	-8.481e+01	0.0000	183.0	3.47%	507.2	1.15%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-35	-8.219e+01	0.0000	668.0	12.68%	3394.9	7.68%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-33	-7.681e+01	0.0000	722.0	13.71%	3823.2	8.65%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-32	-7.423e+01	0.0000	172.0	3.26%	500.0	1.13%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-27	-6.386e+01	0.0000	177.0	3.36%	575.0	1.30%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-27	-6.309e+01	0.0000	151.0	2.87%	449.0	1.02%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-24	-5.629e+01	0.0000	1638.0	31.09%	10965.1	24.80%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-22	-5.105e+01	0.0000	1196.0	22.70%	7693.6	17.40%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-22	-5.085e+01	0.0000	746.0	14.16%	4380.2	9.91%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-21	-5.016e+01	0.0000	1194.0	22.67%	7698.1	17.41%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-20	-4.703e+01	0.0000	1203.0	22.84%	7839.8	17.73%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-19	-4.504e+01	0.0000	947.0	17.98%	5959.9	13.48%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-18	-4.201e+01	0.0000	1630.0	30.94%	11284.0	25.52%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-16	-3.792e+01	0.0000	495.0	9.40%	2826.4	6.39%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-15	-3.623e+01	0.0000	904.0	17.16%	5838.8	13.21%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-15	-3.474e+01	0.0000	636.0	12.07%	3890.8	8.80%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-14	-3.418e+01	0.0000	1372.0	26.04%	9489.9	21.46%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-14	-3.340e+01	0.0000	875.0	16.61%	5689.6	12.87%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-13	-3.180e+01	0.0000	700.0	13.29%	4423.0	10.00%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-13	-3.159e+01	0.0000	1683.0	31.95%	12035.5	27.22%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-13	-3.064e+01	0.0000	426.0	8.09%	2466.8	5.58%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-13	-3.038e+01	0.0000	1314.0	24.94%	9153.4	20.70%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-11	-2.749e+01	0.0000	1179.0	22.38%	8190.7	18.53%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-11	-2.694e+01	0.0000	628.0	11.92%	4002.8	9.05%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-11	-2.584e+01	0.0000	1315.0	24.96%	9313.0	21.06%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-10	-2.439e+01	0.0000	173.0	3.28%	846.6	1.91%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-10	-2.374e+01	0.0000	304.0	5.77%	1732.4	3.92%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-10	-2.371e+01	0.0000	243.0	4.61%	1315.9	2.98%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-10	-2.364e+01	0.0000	456.0	8.66%	2815.2	6.37%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-9	-2.255e+01	0.0000	1804.0	34.24%	13357.5	30.21%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-9	-2.195e+01	0.0000	294.0	5.58%	1693.6	3.83%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-9	-2.192e+01	0.0000	4136.0	78.51%	33099.3	74.86%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-9	-2.173e+01	0.0000	154.0	2.92%	755.3	1.71%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-9	-2.110e+01	0.0000	2367.0	44.93%	18039.1	40.80%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-9	-2.076e+01	0.0000	1047.0	19.87%	7387.4	16.71%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-8	-2.011e+01	0.0000	376.0	7.14%	2311.6	5.23%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-8	-1.984e+01	0.0000	103.0	1.96%	457.7	1.04%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-8	-1.875e+01	0.0000	1612.0	30.60%	11971.3	27.08%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-7	-1.806e+01	0.0000	337.0	6.40%	2074.0	4.69%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-7	-1.703e+01	0.0000	1328.0	25.21%	9764.4	22.08%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-7	-1.666e+01	0.0000	330.0	6.26%	2053.6	4.64%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-6	-1.611e+01	0.0000	2219.0	42.12%	17070.4	38.61%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-6	-1.598e+01	0.0000	225.0	4.27%	1316.7	2.98%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-6	-1.585e+01	0.0000	716.0	13.59%	4986.0	11.28%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-6	-1.580e+01	0.0000	1347.0	25.57%	9973.4	22.56%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-6	-1.496e+01	0.0000	727.0	13.80%	5103.1	11.54%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-6	-1.432e+01	0.0000	1234.0	23.42%	9137.1	20.67%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-6	-1.406e+01	0.0000	570.0	10.82%	3923.4	8.87%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-5	-1.347e+01	0.0000	352.0	6.68%	2292.3	5.18%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-5	-1.235e+01	0.0000	1915.0	36.35%	14781.0	33.43%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-5	-1.188e+01	0.0000	1287.0	24.43%	9688.6	21.91%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-5	-1.165e+01	0.0000	255.0	4.84%	1622.3	3.67%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-4	-1.146e+01	0.0000	181.0	3.44%	1091.5	2.47%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-4	-1.140e+01	0.0000	420.0	7.97%	2865.5	6.48%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-1.129e+01	0.0000	1398.0	26.54%	10620.2	24.02%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-4	-1.111e+01	0.0001	1952.0	37.05%	15164.6	34.30%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-4	-1.071e+01	0.0001	675.0	12.81%	4866.3	11.01%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-4	-1.068e+01	0.0001	118.0	2.24%	664.9	1.50%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-4	-1.054e+01	0.0001	693.0	13.15%	5015.3	11.34%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-4	-9.858e+00	0.0002	364.0	6.91%	2489.2	5.63%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-4	-9.778e+00	0.0002	831.0	15.77%	6143.0	13.89%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-4	-9.695e+00	0.0002	548.0	10.40%	3916.0	8.86%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-4	-9.583e+00	0.0002	984.0	18.68%	7376.1	16.68%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-4	-9.268e+00	0.0003	559.0	10.61%	4019.1	9.09%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-9.051e+00	0.0004	1830.0	34.74%	14300.9	32.35%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-3	-8.931e+00	0.0004	215.0	4.08%	1396.2	3.16%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-3	-8.848e+00	0.0004	34.0	0.65%	141.2	0.32%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-3	-8.806e+00	0.0004	16.0	0.30%	45.2	0.10%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-3	-8.798e+00	0.0004	532.0	10.10%	3828.6	8.66%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-3	-8.797e+00	0.0004	867.0	16.46%	6482.7	14.66%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-8.775e+00	0.0004	188.0	3.57%	1201.0	2.72%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-8.723e+00	0.0005	299.0	5.68%	2032.8	4.60%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-3	-8.679e+00	0.0005	558.0	10.59%	4037.1	9.13%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-3	-8.321e+00	0.0007	451.0	8.56%	3216.4	7.27%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-6.820e+00	0.0030	1367.0	25.95%	10664.1	24.12%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-6.608e+00	0.0037	1997.0	37.91%	15876.2	35.91%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-2	-6.429e+00	0.0044	921.0	17.48%	7061.9	15.97%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-6.389e+00	0.0045	945.0	17.94%	7258.0	16.42%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-6.354e+00	0.0046	679.0	12.89%	5117.2	11.57%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-6.070e+00	0.0060	162.0	3.08%	1081.0	2.44%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-6.070e+00	0.0060	162.0	3.08%	1081.0	2.44%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-5.913e+00	0.0070	769.0	14.60%	5868.9	13.27%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-5.906e+00	0.0070	393.0	7.46%	2869.9	6.49%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-2	-5.382e+00	0.0117	138.0	2.62%	920.8	2.08%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-2	-5.381e+00	0.0117	542.0	10.29%	4079.4	9.23%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-5.364e+00	0.0117	2067.0	39.24%	16575.2	37.49%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-5.290e+00	0.0124	271.0	5.14%	1942.9	4.39%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-5.081e+00	0.0152	1042.0	19.78%	8146.6	18.43%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-5.001e+00	0.0163	455.0	8.64%	3407.4	7.71%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-4.989e+00	0.0164	382.0	7.25%	2828.7	6.40%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-2	-4.917e+00	0.0174	214.0	4.06%	1515.2	3.43%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-4.781e+00	0.0198	297.0	5.64%	2169.0	4.91%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-4.668e+00	0.0219	144.0	2.73%	987.6	2.23%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-4.483e+00	0.0262	1306.0	24.79%	10365.5	23.44%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-4.373e+00	0.0290	1121.0	21.28%	8855.4	20.03%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-4.157e+00	0.0356	85.0	1.61%	558.7	1.26%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.952e+00	0.0434	269.0	5.11%	1988.1	4.50%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-3.894e+00	0.0456	2829.0	53.70%	23116.7	52.29%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.885e+00	0.0456	210.0	3.99%	1527.8	3.46%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-3.760e+00	0.0512	112.0	2.13%	773.0	1.75%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-3.750e+00	0.0513	341.0	6.47%	2571.0	5.82%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-3.490e+00	0.0660	1304.0	24.75%	10453.3	23.64%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.490e+00	0.0660	223.0	4.23%	1648.6	3.73%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.466e+00	0.0665	378.0	7.18%	2885.5	6.53%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.111e+00	0.0941	560.0	10.63%	4384.2	9.92%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.968e+00	0.1077	662.0	12.57%	5229.8	11.83%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.896e+00	0.1149	369.0	7.00%	2852.8	6.45%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.622e+00	0.1499	836.0	15.87%	6693.8	15.14%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.569e+00	0.1567	128.0	2.43%	943.8	2.13%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.390e+00	0.1861	122.0	2.32%	904.7	2.05%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.384e+00	0.1861	1294.0	24.56%	10511.6	23.78%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.349e+00	0.1909	371.0	7.04%	2911.6	6.59%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.311e+00	0.1968	441.0	8.37%	3485.8	7.88%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.204e+00	0.2175	1813.0	34.42%	14859.5	33.61%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.925e+00	0.2852	493.0	9.36%	3950.8	8.94%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.860e+00	0.3021	617.0	11.71%	4979.9	11.26%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.807e+00	0.3162	197.0	3.74%	1540.0	3.48%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.740e+00	0.3357	1550.0	29.42%	12747.8	28.83%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.694e+00	0.3491	566.0	10.74%	4579.5	10.36%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.628e+00	0.3700	405.0	7.69%	3259.9	7.37%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.606e+00	0.3758	557.0	10.57%	4517.0	10.22%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.595e+00	0.3773	363.0	6.89%	2917.6	6.60%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.527e+00	0.4010	61.0	1.16%	460.6	1.04%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.469e+00	0.4218	733.0	13.91%	5994.6	13.56%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.437e+00	0.4328	240.0	4.56%	1922.5	4.35%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.364e+00	0.4625	140.0	2.66%	1109.4	2.51%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.333e+00	0.4734	144.0	2.73%	1144.3	2.59%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.273e+00	0.4992	59.0	1.12%	456.3	1.03%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.205e+00	0.5312	63.0	1.20%	492.8	1.11%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.196e+00	0.5324	166.0	3.15%	1336.6	3.02%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.176e+00	0.5394	23.0	0.44%	171.8	0.39%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.110e+00	0.5725	330.0	6.26%	2702.6	6.11%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.042e+00	0.6089	3363.0	63.84%	28109.4	63.58%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.008e+00	0.6259	187.0	3.55%	1528.6	3.46%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.906e-01	0.6325	396.0	7.52%	3268.8	7.39%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-9.876e-01	0.6325	534.0	10.14%	4419.8	10.00%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-9.402e-01	0.6567	153.0	2.90%	1253.1	2.83%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.558e-01	0.7100	777.0	14.75%	6477.1	14.65%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-8.555e-01	0.7100	1656.0	31.44%	13841.7	31.31%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.536e-01	0.7100	536.0	10.17%	4461.8	10.09%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-8.350e-01	0.7114	265.0	5.03%	2200.0	4.98%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.272e-01	0.7126	129.0	2.45%	1065.2	2.41%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.226e-01	0.7126	557.0	10.57%	4643.5	10.50%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-7.908e-01	0.7300	643.0	12.21%	5370.1	12.15%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-7.764e-01	0.7361	658.0	12.49%	5499.7	12.44%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.726e-01	0.7361	70.0	1.33%	578.4	1.31%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-7.188e-01	0.7704	638.0	12.11%	5345.7	12.09%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.916e-01	0.7870	96.0	1.82%	803.7	1.82%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-6.616e-01	0.8061	244.0	4.63%	2050.4	4.64%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-6.025e-01	0.8501	25.0	0.47%	212.7	0.48%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-5.768e-01	0.8671	24.0	0.46%	205.3	0.46%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-5.694e-01	0.8685	868.0	16.48%	7319.6	16.56%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.467e-01	0.8833	2333.0	44.29%	19636.2	44.41%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.973e-01	0.9227	819.0	15.55%	6931.3	15.68%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.635e-01	0.9490	254.0	4.82%	2172.8	4.91%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-4.505e-01	0.9559	52.0	0.99%	455.6	1.03%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.036e-01	0.9962	647.0	12.28%	5515.0	12.47%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.918e-01	1.0000	2673.0	50.74%	22568.1	51.04%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-3.909e-01	1.0000	284.0	5.39%	2444.1	5.53%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.821e-01	1.0000	1060.0	20.12%	9009.7	20.38%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.798e-01	1.0000	1973.0	37.45%	16696.5	37.76%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.582e-01	1.0000	106.0	2.01%	932.3	2.11%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-3.451e-01	1.0000	931.0	17.67%	7938.2	17.95%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.823e-01	1.0000	9.0	0.17%	91.3	0.21%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.640e-01	1.0000	239.0	4.54%	2097.8	4.74%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.636e-01	1.0000	2757.0	52.33%	23357.1	52.83%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.230e-01	1.0000	2001.0	37.98%	17039.8	38.54%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.900e-01	1.0000	74.0	1.40%	688.1	1.56%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.585e-01	1.0000	900.0	17.08%	7793.6	17.63%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.401e-01	1.0000	2088.0	39.64%	17855.4	40.39%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.394e-01	1.0000	622.0	11.81%	5441.7	12.31%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.195e-01	1.0000	431.0	8.18%	3820.1	8.64%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.082e-01	1.0000	16.0	0.30%	178.9	0.40%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-9.637e-02	1.0000	531.0	10.08%	4701.8	10.63%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-7.413e-02	1.0000	9.0	0.17%	115.3	0.26%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.066e-02	1.0000	516.0	9.79%	4602.0	10.41%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-4.778e-02	1.0000	87.0	1.65%	865.9	1.96%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-4.444e-02	1.0000	1009.0	19.15%	8880.2	20.09%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.017e-02	1.0000	237.0	4.50%	2233.5	5.05%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.192e-02	1.0000	116.0	2.20%	1162.2	2.63%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.166e-02	1.0000	1163.0	22.08%	10275.4	23.24%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.977e-02	1.0000	1.0	0.02%	33.6	0.08%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.483e-02	1.0000	19.0	0.36%	249.7	0.56%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.432e-02	1.0000	379.0	7.19%	3534.3	7.99%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.340e-02	1.0000	67.0	1.27%	724.2	1.64%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.272e-02	1.0000	280.0	5.32%	2665.8	6.03%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.154e-02	1.0000	1348.0	25.59%	11921.7	26.96%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.349e-03	1.0000	825.0	15.66%	7452.8	16.86%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-7.636e-03	1.0000	1265.0	24.01%	11253.8	25.45%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-7.404e-03	1.0000	1459.0	27.70%	12913.3	29.21%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.057e-03	1.0000	244.0	4.63%	2382.5	5.39%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.797e-03	1.0000	794.0	15.07%	7238.7	16.37%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.463e-03	1.0000	3988.0	75.70%	34138.8	77.21%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.929e-03	1.0000	422.0	8.01%	4012.1	9.07%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.134e-03	1.0000	909.0	17.26%	8298.7	18.77%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.249e-03	1.0000	47.0	0.89%	590.4	1.34%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.084e-03	1.0000	175.0	3.32%	1825.8	4.13%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-9.430e-04	1.0000	46.0	0.87%	586.3	1.33%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-9.110e-04	1.0000	911.0	17.29%	8378.3	18.95%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.020e-04	1.0000	2016.0	38.27%	17896.6	40.48%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.390e-04	1.0000	137.0	2.60%	1507.9	3.41%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.380e-04	1.0000	3333.0	63.27%	28957.9	65.50%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.870e-04	1.0000	75.0	1.42%	919.0	2.08%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.300e-05	1.0000	583.0	11.07%	5654.6	12.79%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.600e-05	1.0000	1459.0	27.70%	13312.2	30.11%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.500e-05	1.0000	365.0	6.93%	3694.5	8.36%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.000e-05	1.0000	2588.0	49.13%	22965.9	51.94%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.500e-05	1.0000	104.0	1.97%	1271.4	2.88%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.400e-05	1.0000	66.0	1.25%	884.0	2.00%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.000e-05	1.0000	48.0	0.91%	698.4	1.58%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-9.000e-06	1.0000	91.0	1.73%	1151.9	2.61%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.000e-06	1.0000	3197.0	60.69%	28159.2	63.69%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.000e-06	1.0000	56.0	1.06%	829.0	1.88%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.000e-06	1.0000	1708.0	32.42%	15719.8	35.55%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.000e-06	1.0000	40.0	0.76%	659.4	1.49%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-0.000e+00	1.0000	1436.0	27.26%	13484.0	30.50%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	96.0	1.82%	1345.4	3.04%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-0.000e+00	1.0000	780.0	14.81%	7816.3	17.68%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-0.000e+00	1.0000	1982.0	37.62%	18323.4	41.44%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-0.000e+00	1.0000	1211.0	22.99%	11705.6	26.48%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	3798.0	72.10%	33438.7	75.63%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-0.000e+00	1.0000	1055.0	20.03%	10465.3	23.67%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	902.0	17.12%	9108.3	20.60%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	2390.0	45.37%	22096.0	49.98%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	359.0	6.81%	4176.6	9.45%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-0.000e+00	1.0000	4034.0	76.58%	35621.0	80.57%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-0.000e+00	1.0000	877.0	16.65%	9179.7	20.76%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-0.000e+00	1.0000	1172.0	22.25%	11870.9	26.85%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	79.0	1.50%	1405.9	3.18%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-0.000e+00	1.0000	1130.0	21.45%	11577.0	26.18%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	0.000e+00	1.0000	1480.0	28.09%	16809.4	38.02%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	1218.0	23.12%	15909.0	35.98%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	920.0	17.46%	15767.8	35.66%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	324.0	6.15%	5960.4	13.48%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	932.0	17.69%	13375.1	30.25%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	584.0	11.09%	9136.3	20.66%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	273.0	5.18%	5324.4	12.04%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	1136.0	21.56%	12377.0	27.99%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	0.000e+00	1.0000	2039.0	38.71%	20029.3	45.30%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	808.0	15.34%	8994.9	20.34%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	2326.0	44.15%	26059.5	58.94%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	766.0	14.54%	8535.5	19.31%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	1584.0	30.07%	16357.7	37.00%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	1347.0	25.57%	14596.4	33.01%