Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 7023)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 42653)	% of Background Sequences with Motif
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-902	-2.078e+03	0.0000	3430.0	48.84%	6756.2	15.84%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-864	-1.991e+03	0.0000	3082.0	43.88%	5622.2	13.18%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-838	-1.931e+03	0.0000	3386.0	48.21%	6949.5	16.30%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-806	-1.858e+03	0.0000	3537.0	50.36%	7776.5	18.23%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-664	-1.531e+03	0.0000	2192.0	31.21%	3516.8	8.25%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-528	-1.217e+03	0.0000	1676.0	23.86%	2510.7	5.89%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-263	-6.064e+02	0.0000	2814.0	40.07%	9244.9	21.68%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-262	-6.049e+02	0.0000	1144.0	16.29%	2149.3	5.04%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-262	-6.033e+02	0.0000	3495.0	49.77%	12788.1	29.99%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-259	-5.969e+02	0.0000	2751.0	39.17%	8987.5	21.07%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-250	-5.761e+02	0.0000	2737.0	38.97%	9035.6	21.19%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-218	-5.030e+02	0.0000	3035.0	43.22%	11001.6	25.80%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-209	-4.820e+02	0.0000	1688.0	24.04%	4675.3	10.96%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-202	-4.660e+02	0.0000	1325.0	18.87%	3248.3	7.62%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-194	-4.488e+02	0.0000	1233.0	17.56%	2953.6	6.93%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-194	-4.480e+02	0.0000	935.0	13.31%	1863.8	4.37%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-154	-3.563e+02	0.0000	2068.0	29.45%	7106.3	16.66%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-151	-3.496e+02	0.0000	2872.0	40.89%	11265.6	26.42%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-147	-3.385e+02	0.0000	1939.0	27.61%	6600.4	15.48%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-141	-3.261e+02	0.0000	2467.0	35.13%	9324.4	21.86%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-134	-3.092e+02	0.0000	3128.0	44.54%	13008.2	30.50%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-134	-3.086e+02	0.0000	3426.0	48.78%	14687.1	34.44%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-130	-3.014e+02	0.0000	2249.0	32.02%	8399.8	19.70%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-120	-2.786e+02	0.0000	2305.0	32.82%	8870.2	20.80%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-119	-2.756e+02	0.0000	4031.0	57.40%	18562.4	43.53%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-117	-2.710e+02	0.0000	2981.0	42.45%	12555.9	29.44%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-98	-2.263e+02	0.0000	3998.0	56.93%	18921.7	44.37%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-96	-2.218e+02	0.0000	431.0	6.14%	800.7	1.88%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-95	-2.188e+02	0.0000	1648.0	23.47%	6043.2	14.17%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-94	-2.174e+02	0.0000	3948.0	56.22%	18726.6	43.91%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-91	-2.098e+02	0.0000	3833.0	54.58%	18130.4	42.51%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-80	-1.845e+02	0.0000	2413.0	34.36%	10338.2	24.24%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-69	-1.610e+02	0.0000	303.0	4.31%	548.6	1.29%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-64	-1.491e+02	0.0000	5487.0	78.13%	29431.4	69.01%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-59	-1.371e+02	0.0000	314.0	4.47%	651.4	1.53%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-55	-1.287e+02	0.0000	903.0	12.86%	3170.9	7.44%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-52	-1.201e+02	0.0000	272.0	3.87%	560.8	1.31%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-49	-1.146e+02	0.0000	3436.0	48.92%	17112.2	40.13%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-49	-1.139e+02	0.0000	3340.0	47.56%	16556.3	38.82%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-49	-1.130e+02	0.0000	1150.0	16.37%	4504.8	10.56%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-48	-1.110e+02	0.0000	2275.0	32.39%	10499.9	24.62%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-44	-1.030e+02	0.0000	273.0	3.89%	620.3	1.45%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-41	-9.466e+01	0.0000	1851.0	26.36%	8401.7	19.70%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-40	-9.416e+01	0.0000	4153.0	59.13%	21802.7	51.12%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-40	-9.390e+01	0.0000	1328.0	18.91%	5621.8	13.18%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-37	-8.562e+01	0.0000	3794.0	54.02%	19777.3	46.37%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-36	-8.508e+01	0.0000	1589.0	22.63%	7119.0	16.69%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-36	-8.361e+01	0.0000	2158.0	30.73%	10269.4	24.08%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-35	-8.269e+01	0.0000	2471.0	35.18%	12054.5	28.27%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-33	-7.698e+01	0.0000	1805.0	25.70%	8417.3	19.74%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-31	-7.294e+01	0.0000	534.0	7.60%	1886.8	4.42%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-31	-7.207e+01	0.0000	1750.0	24.92%	8195.0	19.22%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-30	-7.036e+01	0.0000	2611.0	37.18%	13088.6	30.69%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-30	-6.978e+01	0.0000	406.0	5.78%	1327.5	3.11%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-30	-6.963e+01	0.0000	630.0	8.97%	2369.9	5.56%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-29	-6.842e+01	0.0000	904.0	12.87%	3742.7	8.78%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-29	-6.798e+01	0.0000	1036.0	14.75%	4426.4	10.38%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-27	-6.359e+01	0.0000	529.0	7.53%	1941.6	4.55%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-27	-6.254e+01	0.0000	1063.0	15.14%	4639.2	10.88%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-26	-5.988e+01	0.0000	4981.0	70.92%	27698.4	64.95%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-25	-5.763e+01	0.0000	1265.0	18.01%	5786.2	13.57%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-24	-5.711e+01	0.0000	2197.0	31.28%	10980.6	25.75%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-24	-5.638e+01	0.0000	930.0	13.24%	4028.8	9.45%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-24	-5.606e+01	0.0000	2284.0	32.52%	11500.9	26.97%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-24	-5.560e+01	0.0000	794.0	11.31%	3336.6	7.82%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-21	-4.933e+01	0.0000	3270.0	46.56%	17436.7	40.89%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-19	-4.603e+01	0.0000	860.0	12.25%	3808.4	8.93%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-19	-4.397e+01	0.0000	1865.0	26.56%	9374.5	21.98%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-18	-4.179e+01	0.0000	2061.0	29.35%	10544.4	24.72%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-17	-4.143e+01	0.0000	1123.0	15.99%	5292.3	12.41%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-17	-4.044e+01	0.0000	1380.0	19.65%	6725.9	15.77%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-17	-3.952e+01	0.0000	1214.0	17.29%	5826.6	13.66%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-15	-3.676e+01	0.0000	275.0	3.92%	980.8	2.30%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-14	-3.374e+01	0.0000	2221.0	31.62%	11679.0	27.39%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-14	-3.358e+01	0.0000	1155.0	16.45%	5621.4	13.18%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-14	-3.346e+01	0.0000	174.0	2.48%	550.6	1.29%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-14	-3.276e+01	0.0000	1299.0	18.50%	6439.9	15.10%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-13	-3.222e+01	0.0000	1150.0	16.37%	5622.6	13.18%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-13	-3.132e+01	0.0000	788.0	11.22%	3663.1	8.59%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-13	-2.999e+01	0.0000	1441.0	20.52%	7303.4	17.13%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-11	-2.739e+01	0.0000	6204.0	88.34%	36451.0	85.47%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-11	-2.627e+01	0.0000	462.0	6.58%	2022.3	4.74%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-10	-2.438e+01	0.0000	2741.0	39.03%	15033.5	35.25%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-10	-2.412e+01	0.0000	572.0	8.14%	2635.3	6.18%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-10	-2.344e+01	0.0000	1232.0	17.54%	6291.9	14.75%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-10	-2.322e+01	0.0000	2810.0	40.01%	15486.8	36.31%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-9	-2.081e+01	0.0000	963.0	13.71%	4847.7	11.37%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-8	-2.038e+01	0.0000	264.0	3.76%	1091.4	2.56%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-8	-2.020e+01	0.0000	578.0	8.23%	2740.4	6.43%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-8	-1.953e+01	0.0000	298.0	4.24%	1274.1	2.99%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-8	-1.903e+01	0.0000	2959.0	42.13%	16541.7	38.79%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-8	-1.852e+01	0.0000	836.0	11.90%	4196.6	9.84%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-8	-1.847e+01	0.0000	1820.0	25.91%	9828.5	23.05%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-6	-1.578e+01	0.0000	405.0	5.77%	1895.2	4.44%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-5	-1.363e+01	0.0000	1137.0	16.19%	6049.6	14.19%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-5	-1.283e+01	0.0000	485.0	6.91%	2393.0	5.61%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-5	-1.211e+01	0.0000	2879.0	40.99%	16387.5	38.43%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-5	-1.167e+01	0.0000	729.0	10.38%	3787.3	8.88%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-4	-1.151e+01	0.0000	497.0	7.08%	2491.9	5.84%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-1.108e+01	0.0000	2517.0	35.84%	14275.7	33.47%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-4	-1.065e+01	0.0001	485.0	6.91%	2447.8	5.74%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-4	-1.032e+01	0.0001	446.0	6.35%	2239.2	5.25%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-4	-1.010e+01	0.0001	926.0	13.19%	4966.8	11.65%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-9.137e+00	0.0003	523.0	7.45%	2703.6	6.34%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-3	-9.034e+00	0.0003	221.0	3.15%	1039.4	2.44%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-3	-8.863e+00	0.0004	374.0	5.33%	1878.8	4.41%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-8.482e+00	0.0005	2105.0	29.97%	11967.5	28.06%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-3	-8.469e+00	0.0005	355.0	5.05%	1783.7	4.18%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-3	-7.978e+00	0.0008	890.0	12.67%	4845.4	11.36%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-3	-7.679e+00	0.0011	184.0	2.62%	867.4	2.03%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-3	-7.427e+00	0.0014	614.0	8.74%	3278.2	7.69%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-3	-7.202e+00	0.0018	777.0	11.06%	4225.2	9.91%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-3	-7.180e+00	0.0018	250.0	3.56%	1237.0	2.90%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-7.142e+00	0.0018	581.0	8.27%	3100.9	7.27%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-6.775e+00	0.0026	1392.0	19.82%	7843.5	18.39%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-6.455e+00	0.0036	437.0	6.22%	2304.2	5.40%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-2	-6.301e+00	0.0041	205.0	2.92%	1010.2	2.37%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-2	-5.916e+00	0.0060	1209.0	17.21%	6815.6	15.98%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-2	-5.900e+00	0.0061	782.0	11.13%	4314.8	10.12%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-2	-5.880e+00	0.0061	360.0	5.13%	1887.6	4.43%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.459e+00	0.0093	1449.0	20.63%	8263.1	19.38%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-5.053e+00	0.0138	1792.0	25.52%	10333.7	24.23%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-4.848e+00	0.0168	597.0	8.50%	3290.1	7.71%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-4.612e+00	0.0211	558.0	7.95%	3076.0	7.21%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-4.583e+00	0.0216	3014.0	42.92%	17717.7	41.54%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-4.582e+00	0.0216	227.0	3.23%	1178.4	2.76%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-4.175e+00	0.0320	2020.0	28.76%	11770.2	27.60%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-4.036e+00	0.0364	812.0	11.56%	4593.8	10.77%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.808e+00	0.0454	934.0	13.30%	5328.8	12.50%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-3.683e+00	0.0511	2010.0	28.62%	11756.5	27.57%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.636e+00	0.0531	1270.0	18.08%	7336.0	17.20%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.636e+00	0.0531	471.0	6.71%	2618.1	6.14%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.389e+00	0.0670	874.0	12.44%	5003.0	11.73%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-3.353e+00	0.0689	3316.0	47.22%	19673.1	46.13%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.000e+00	0.0974	190.0	2.71%	1021.9	2.40%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.999e+00	0.0974	495.0	7.05%	2794.8	6.55%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.980e+00	0.0979	738.0	10.51%	4228.4	9.91%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.964e+00	0.0988	473.0	6.74%	2667.9	6.26%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-2.758e+00	0.1204	549.0	7.82%	3127.1	7.33%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.735e+00	0.1223	1024.0	14.58%	5947.4	13.95%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.700e+00	0.1258	425.0	6.05%	2401.5	5.63%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.530e+00	0.1481	2515.0	35.81%	14927.7	35.00%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.128e+00	0.2198	1103.0	15.71%	6479.8	15.19%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.086e+00	0.2278	105.0	1.50%	567.4	1.33%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.957e+00	0.2572	834.0	11.88%	4888.0	11.46%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.895e+00	0.2718	263.0	3.74%	1497.9	3.51%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.807e+00	0.2949	1785.0	25.42%	10621.4	24.91%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.684e+00	0.3310	33.0	0.47%	169.6	0.40%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.684e+00	0.3310	870.0	12.39%	5132.9	12.04%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.626e+00	0.3464	81.0	1.15%	445.4	1.04%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.501e+00	0.3897	514.0	7.32%	3019.3	7.08%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.468e+00	0.4000	765.0	10.89%	4527.6	10.62%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.449e+00	0.4052	105.0	1.50%	592.8	1.39%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.159e+00	0.5379	234.0	3.33%	1375.3	3.22%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.144e+00	0.5424	706.0	10.05%	4213.6	9.88%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.105e+00	0.5605	790.0	11.25%	4725.5	11.08%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.099e+00	0.5605	26.0	0.37%	143.8	0.34%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.098e+00	0.5605	169.0	2.41%	991.9	2.33%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.018e+00	0.6000	36.0	0.51%	204.1	0.48%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.800e-01	0.6192	482.0	6.86%	2884.1	6.76%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.963e-01	0.6692	2919.0	41.56%	17664.8	41.42%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-8.702e-01	0.6826	105.0	1.50%	623.3	1.46%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-8.178e-01	0.7149	752.0	10.71%	4541.5	10.65%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.311e-01	0.7702	209.0	2.98%	1263.9	2.96%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.311e-01	0.7702	209.0	2.98%	1263.9	2.96%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.132e-01	0.7794	270.0	3.84%	1635.4	3.83%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.017e-01	0.8661	3462.0	49.30%	21050.5	49.36%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.224e-01	0.9320	1379.0	19.64%	8419.2	19.74%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-4.853e-01	0.9615	30.0	0.43%	190.9	0.45%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.235e-01	1.0000	16.0	0.23%	105.6	0.25%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.778e-01	1.0000	141.0	2.01%	889.2	2.08%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.356e-01	1.0000	84.0	1.20%	540.7	1.27%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.058e-01	1.0000	3058.0	43.54%	18726.7	43.91%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.010e-01	1.0000	164.0	2.34%	1044.7	2.45%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.560e-01	1.0000	34.0	0.48%	232.2	0.54%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.512e-01	1.0000	924.0	13.16%	5741.2	13.46%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.040e-01	1.0000	2251.0	32.05%	13880.1	32.55%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.729e-01	1.0000	4930.0	70.20%	30165.8	70.73%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.715e-01	1.0000	210.0	2.99%	1362.4	3.19%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.653e-01	1.0000	1309.0	18.64%	8151.2	19.11%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.559e-01	1.0000	10.0	0.14%	81.5	0.19%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.136e-01	1.0000	300.0	4.27%	1950.8	4.57%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-9.849e-02	1.0000	1013.0	14.42%	6387.2	14.98%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.140e-02	1.0000	305.0	4.34%	2016.1	4.73%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-5.734e-02	1.0000	2.0	0.03%	28.1	0.07%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.710e-02	1.0000	167.0	2.38%	1148.9	2.69%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-4.204e-02	1.0000	7.0	0.10%	74.6	0.17%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.860e-02	1.0000	388.0	5.52%	2566.1	6.02%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.788e-02	1.0000	213.0	3.03%	1453.5	3.41%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.697e-02	1.0000	152.0	2.16%	1060.3	2.49%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-3.265e-02	1.0000	134.0	1.91%	947.6	2.22%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.726e-02	1.0000	1286.0	18.31%	8229.9	19.30%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.656e-02	1.0000	3910.0	55.67%	24279.0	56.93%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.628e-02	1.0000	97.0	1.38%	723.8	1.70%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.552e-02	1.0000	24.0	0.34%	217.9	0.51%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.418e-02	1.0000	999.0	14.22%	6461.5	15.15%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-6.534e-03	1.0000	910.0	12.96%	5957.9	13.97%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.426e-03	1.0000	449.0	6.39%	3045.9	7.14%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.978e-03	1.0000	1027.0	14.62%	6695.7	15.70%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.986e-03	1.0000	4059.0	57.80%	25290.9	59.30%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.792e-03	1.0000	1530.0	21.79%	9879.7	23.17%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.621e-03	1.0000	349.0	4.97%	2440.9	5.72%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.578e-03	1.0000	1360.0	19.36%	8828.5	20.70%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.689e-03	1.0000	96.0	1.37%	771.8	1.81%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.184e-03	1.0000	415.0	5.91%	2899.3	6.80%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-8.180e-04	1.0000	707.0	10.07%	4789.5	11.23%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.470e-04	1.0000	525.0	7.48%	3641.2	8.54%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.330e-04	1.0000	203.0	2.89%	1531.0	3.59%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.110e-04	1.0000	1732.0	24.66%	11277.2	26.44%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.790e-04	1.0000	1991.0	28.35%	12889.6	30.22%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.820e-04	1.0000	3547.0	50.51%	22442.8	52.62%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.120e-04	1.0000	5494.0	78.23%	34117.7	80.00%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-9.900e-05	1.0000	577.0	8.22%	4045.6	9.49%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.900e-05	1.0000	224.0	3.19%	1723.6	4.04%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-7.200e-05	1.0000	3212.0	45.74%	20467.5	47.99%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.600e-05	1.0000	2351.0	33.48%	15210.4	35.67%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-4.100e-05	1.0000	673.0	9.58%	4700.8	11.02%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.700e-05	1.0000	2003.0	28.52%	13084.2	30.68%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.200e-05	1.0000	514.0	7.32%	3676.0	8.62%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.300e-05	1.0000	1528.0	21.76%	10150.3	23.80%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.300e-05	1.0000	625.0	8.90%	4411.4	10.34%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.800e-05	1.0000	76.0	1.08%	711.2	1.67%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-8.000e-06	1.0000	63.0	0.90%	625.9	1.47%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-7.000e-06	1.0000	1967.0	28.01%	12949.1	30.36%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-7.000e-06	1.0000	1127.0	16.05%	7678.6	18.01%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.000e-06	1.0000	3747.0	53.35%	23864.9	55.96%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.000e-06	1.0000	48.0	0.68%	520.6	1.22%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.000e-06	1.0000	423.0	6.02%	3182.9	7.46%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.000e-06	1.0000	357.0	5.08%	2739.3	6.42%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.000e-06	1.0000	904.0	12.87%	6348.4	14.89%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-0.000e+00	1.0000	75.0	1.07%	793.2	1.86%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	1452.0	20.67%	9964.8	23.37%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-0.000e+00	1.0000	1797.0	25.59%	12143.7	28.47%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-0.000e+00	1.0000	142.0	2.02%	1315.0	3.08%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-0.000e+00	1.0000	1995.0	28.41%	13447.8	31.53%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-0.000e+00	1.0000	742.0	10.57%	5451.5	12.78%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	142.0	2.02%	1364.4	3.20%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	177.0	2.52%	1625.3	3.81%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-0.000e+00	1.0000	2903.0	41.34%	19179.7	44.97%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	165.0	2.35%	1551.9	3.64%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	108.0	1.54%	1150.8	2.70%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	96.0	1.37%	1063.6	2.49%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	5436.0	77.40%	34396.6	80.65%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	55.0	0.78%	740.1	1.74%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	4542.0	64.67%	29240.6	68.56%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-0.000e+00	1.0000	115.0	1.64%	1278.6	3.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	234.0	3.33%	2267.3	5.32%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	5549.0	79.01%	35277.5	82.72%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	3399.0	48.40%	23182.7	54.36%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	2355.0	33.53%	17272.6	40.50%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	3657.0	52.07%	24617.3	57.72%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	403.0	5.74%	6397.8	15.00%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	1174.0	16.72%	14077.3	33.01%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	705.0	10.04%	9690.7	22.72%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	336.0	4.78%	5731.8	13.44%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	1592.0	22.67%	13060.0	30.62%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	0.000e+00	1.0000	1339.0	19.07%	10152.1	23.80%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	1182.0	16.83%	9586.6	22.48%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	87.0	1.24%	1607.2	3.77%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	2179.0	31.03%	17488.7	41.01%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	943.0	13.43%	9599.9	22.51%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	2129.0	30.31%	18211.0	42.70%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	1058.0	15.06%	9409.5	22.06%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	1934.0	27.54%	16393.5	38.44%