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Computational Analysis: Demultiplexing Pipeline

Project Details
Yoo Lab

Run: HiSeq 1999_2

Analyzed:
Seq data expires:
Analysis data expires:
Run notes:

1 Lane(s) single reads 1 X 50 bps

Sample 9b 11a 8a 13b 13a 9a 11b 8b
Index ATGACAG CGGTGGC GCAACGC GCCGTTT GTACGGC TACAGAC TACATGG TCCCAGC
Sample statistics:
Reads 42,700,575 (10.8%) 44,862,890 (11.3%) 59,779,319 (15.1%) 51,761,041 (13.1%) 40,601,747 (10.3%) 41,416,942 (10.5%) 52,465,861 (13.3%) 52,252,812 (13.2%)
Quality assurance:
Reads Passed Passed Passed Passed Passed Passed Passed Passed
Demux distribution graph

Deliverables:

If you have access to the CGS cluster, the data is also located here: /scratch/gtac/GTAC_RUN_DATA/Yoo_1999_2

Raw sequence reads: Files generated by the Illumina sequencer for single reads. (15-25G each -fastq format)

run_1999_s_2_withindex_sequence.txt_ATGACAG.fq.gz
run_1999_s_2_withindex_sequence.txt_CGGTGGC.fq.gz
run_1999_s_2_withindex_sequence.txt_GCAACGC.fq.gz
run_1999_s_2_withindex_sequence.txt_GCCGTTT.fq.gz
run_1999_s_2_withindex_sequence.txt_GTACGGC.fq.gz
run_1999_s_2_withindex_sequence.txt_TACAGAC.fq.gz
run_1999_s_2_withindex_sequence.txt_TACATGG.fq.gz
run_1999_s_2_withindex_sequence.txt_TCCCAGC.fq.gz



Any publications resulting from the attached data should include the following acknowledgment: "This publication was made possible in part by Grant Number UL1 RR024992 from the NIH-National Center for Research Resources (NCRR)."