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Computational Analysis: Demultiplexing Pipeline

Project Details
Yoo Lab

Run: HiSeq 1999_4

Analyzed:
Seq data expires:
Analysis data expires:
Run notes:

1 Lane(s) single reads 1 X 50 bps

Sample 28b 27a 25a 25b 26b 28a 26a 22b 27b 22a
Index ACCTGAA ACTCCAA AGCGCCG ATCGAGC CTGGTGG GACACAG GTATTTG TCAAACA TCGAGAT TGCTGGG
Sample statistics:
Reads 40,328,061 (10.0%) 37,505,948 (9.3%) 46,108,556 (11.5%) 35,454,568 (8.8%) 38,142,622 (9.5%) 40,301,991 (10.0%) 35,053,344 (8.7%) 34,775,772 (8.7%) 43,654,651 (10.9%) 39,912,212 (9.9%)
Quality assurance:
Reads Passed Passed Passed Passed Passed Passed Passed Passed Passed Passed
Demux distribution graph

Deliverables:

If you have access to the CGS cluster, the data is also located here: /scratch/gtac/GTAC_RUN_DATA/Yoo_1999_4

Raw sequence reads: Files generated by the Illumina sequencer for single reads. (15-25G each -fastq format)

run_1999_s_4_withindex_sequence.txt_ACCTGAA.fq.gz
run_1999_s_4_withindex_sequence.txt_ACTCCAA.fq.gz
run_1999_s_4_withindex_sequence.txt_AGCGCCG.fq.gz
run_1999_s_4_withindex_sequence.txt_ATCGAGC.fq.gz
run_1999_s_4_withindex_sequence.txt_CTGGTGG.fq.gz
run_1999_s_4_withindex_sequence.txt_GACACAG.fq.gz
run_1999_s_4_withindex_sequence.txt_GTATTTG.fq.gz
run_1999_s_4_withindex_sequence.txt_TCAAACA.fq.gz
run_1999_s_4_withindex_sequence.txt_TCGAGAT.fq.gz
run_1999_s_4_withindex_sequence.txt_TGCTGGG.fq.gz



Any publications resulting from the attached data should include the following acknowledgment: "This publication was made possible in part by Grant Number UL1 RR024992 from the NIH-National Center for Research Resources (NCRR)."