Information for 9-NNBYTGGCAR (Motif 3)

G C A T C G A T A G T C A G T C A C G T A C T G A T C G A G T C C G T A T C A G
Reverse Opposite:
A G T C A C G T A C T G A T G C A G T C C G T A C T A G T C A G G C T A C G T A
p-value:1e-767
log p-value:-1.767e+03
Information Content per bp:1.670
Number of Target Sequences with motif24488.0
Percentage of Target Sequences with motif37.93%
Number of Background Sequences with motif17183.1
Percentage of Background Sequences with motif27.17%
Average Position of motif in Targets256.8 +/- 180.5bp
Average Position of motif in Background220.9 +/- 136.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.98
Offset:2
Orientation:reverse strand
Alignment:NNBYTGGCAR
--CTTGGCAA
 G C A T C G A T A G T C A G T C A C G T A C T G A T C G A G T C C G T A T C A G
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:NNBYTGGCAR-
--NTTGGCANN
 G C A T C G A T A G T C A G T C A C G T A C T G A T C G A G T C C G T A T C A G A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:3
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:NNBYTGGCAR
-VGCTGGCA-
 G C A T C G A T A G T C A G T C A C G T A C T G A T C G A G T C C G T A T C A G
A C G T T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:NNBYTGGCAR-
-NNTTGGCANN
 G C A T C G A T A G T C A G T C A C G T A C T G A T C G A G T C C G T A T C A G A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.2/Jaspar

Match Rank:5
Score:0.82
Offset:0
Orientation:forward strand
Alignment:NNBYTGGCAR-
TACTTGGCAGA
 G C A T C G A T A G T C A G T C A C G T A C T G A T C G A G T C C G T A T C A G A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:NNBYTGGCAR
-ARNTGACA-
 G C A T C G A T A G T C A G T C A C G T A C T G A T C G A G T C C G T A T C A G
A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.80
Offset:3
Orientation:forward strand
Alignment:NNBYTGGCAR-
---YTGWCADY
 G C A T C G A T A G T C A G T C A C G T A C T G A T C G A G T C C G T A T C A G A C G T
A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.78
Offset:1
Orientation:forward strand
Alignment:NNBYTGGCAR-
-VGCTGWCAVB
 G C A T C G A T A G T C A G T C A C G T A C T G A T C G A G T C C G T A T C A G A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:NNBYTGGCAR
-GGTTGGCAT
 G C A T C G A T A G T C A G T C A C G T A C T G A T C G A G T C C G T A T C A G
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:NNBYTGGCAR
--GCTGTCAA
 G C A T C G A T A G T C A G T C A C G T A C T G A T C G A G T C C G T A T C A G
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A