Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 64562)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 63241)	% of Background Sequences with Motif
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-4555	-1.049e+04	0.0000	37717.0	58.42%	19465.7	30.78%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-4488	-1.034e+04	0.0000	30608.0	47.41%	13771.9	21.78%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-4371	-1.006e+04	0.0000	37731.0	58.44%	19803.8	31.32%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-4247	-9.780e+03	0.0000	12151.0	18.82%	2595.3	4.10%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-4175	-9.614e+03	0.0000	11596.0	17.96%	2395.5	3.79%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-4154	-9.567e+03	0.0000	40857.0	63.29%	23027.7	36.42%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-4043	-9.311e+03	0.0000	9673.0	14.98%	1679.3	2.66%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-4025	-9.269e+03	0.0000	30778.0	47.67%	14628.7	23.14%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-3910	-9.004e+03	0.0000	18217.0	28.22%	6050.2	9.57%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-3883	-8.942e+03	0.0000	8296.0	12.85%	1246.8	1.97%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-3524	-8.116e+03	0.0000	12800.0	19.83%	3405.2	5.39%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2258	-5.200e+03	0.0000	39439.0	61.09%	26014.6	41.14%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-2176	-5.012e+03	0.0000	31076.0	48.14%	18577.0	29.38%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2155	-4.963e+03	0.0000	17402.0	26.96%	7830.9	12.38%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2113	-4.865e+03	0.0000	25311.0	39.21%	13895.0	21.97%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2111	-4.861e+03	0.0000	29319.0	45.41%	17227.2	27.24%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1881	-4.332e+03	0.0000	30739.0	47.61%	19051.8	30.13%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1780	-4.100e+03	0.0000	20048.0	31.05%	10487.6	16.59%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-1634	-3.764e+03	0.0000	26569.0	41.15%	16121.5	25.50%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-857	-1.973e+03	0.0000	34178.0	52.94%	25724.3	40.68%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-840	-1.936e+03	0.0000	3115.0	4.83%	794.3	1.26%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-749	-1.727e+03	0.0000	45392.0	70.31%	37417.2	59.17%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-728	-1.676e+03	0.0000	25664.0	39.75%	18403.3	29.10%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-630	-1.453e+03	0.0000	7209.0	11.17%	3580.7	5.66%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-493	-1.137e+03	0.0000	25279.0	39.16%	19186.7	30.34%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-339	-7.826e+02	0.0000	6289.0	9.74%	3657.4	5.78%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-252	-5.823e+02	0.0000	16221.0	25.13%	12418.3	19.64%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-240	-5.540e+02	0.0000	7530.0	11.66%	5004.1	7.91%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-199	-4.594e+02	0.0000	18769.0	29.07%	15108.7	23.89%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-199	-4.586e+02	0.0000	14076.0	21.80%	10864.9	17.18%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-187	-4.324e+02	0.0000	21500.0	33.30%	17729.2	28.04%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-169	-3.909e+02	0.0000	22448.0	34.77%	18776.9	29.70%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-164	-3.793e+02	0.0000	11020.0	17.07%	8394.7	13.28%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-162	-3.738e+02	0.0000	18172.0	28.15%	14868.4	23.51%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-153	-3.545e+02	0.0000	7265.0	11.25%	5212.3	8.24%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-151	-3.482e+02	0.0000	32696.0	50.65%	28765.6	45.49%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-148	-3.423e+02	0.0000	11348.0	17.58%	8798.5	13.91%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-148	-3.420e+02	0.0000	12955.0	20.07%	10234.1	16.19%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-146	-3.382e+02	0.0000	2107.0	3.26%	1117.9	1.77%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-144	-3.332e+02	0.0000	4819.0	7.46%	3223.1	5.10%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-144	-3.326e+02	0.0000	8980.0	13.91%	6746.0	10.67%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-142	-3.271e+02	0.0000	16528.0	25.60%	13536.2	21.41%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-134	-3.096e+02	0.0000	3531.0	5.47%	2234.8	3.53%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-133	-3.069e+02	0.0000	10192.0	15.79%	7887.7	12.47%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-133	-3.069e+02	0.0000	9457.0	14.65%	7239.3	11.45%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-123	-2.853e+02	0.0000	8486.0	13.14%	6454.1	10.21%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-121	-2.805e+02	0.0000	10168.0	15.75%	7953.2	12.58%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-113	-2.606e+02	0.0000	11069.0	17.15%	8829.4	13.96%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-107	-2.475e+02	0.0000	12865.0	19.93%	10505.2	16.61%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-107	-2.469e+02	0.0000	19758.0	30.60%	16889.1	26.71%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-106	-2.456e+02	0.0000	6819.0	10.56%	5123.0	8.10%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-106	-2.443e+02	0.0000	10570.0	16.37%	8441.5	13.35%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-105	-2.429e+02	0.0000	7725.0	11.97%	5920.7	9.36%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-104	-2.396e+02	0.0000	10950.0	16.96%	8801.9	13.92%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-101	-2.337e+02	0.0000	2813.0	4.36%	1800.0	2.85%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-101	-2.331e+02	0.0000	9949.0	15.41%	7926.4	12.54%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-99	-2.298e+02	0.0000	11927.0	18.47%	9724.6	15.38%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-99	-2.289e+02	0.0000	9439.0	14.62%	7485.7	11.84%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-94	-2.184e+02	0.0000	9373.0	14.52%	7465.2	11.81%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-94	-2.171e+02	0.0000	10398.0	16.11%	8391.8	13.27%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-93	-2.144e+02	0.0000	13699.0	21.22%	11411.8	18.05%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-90	-2.085e+02	0.0000	14792.0	22.91%	12447.7	19.69%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-90	-2.083e+02	0.0000	15495.0	24.00%	13099.4	20.72%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-89	-2.064e+02	0.0000	4982.0	7.72%	3654.7	5.78%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-88	-2.029e+02	0.0000	18730.0	29.01%	16149.6	25.54%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-86	-1.994e+02	0.0000	16936.0	26.23%	14486.2	22.91%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-86	-1.983e+02	0.0000	12136.0	18.80%	10050.2	15.89%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-80	-1.863e+02	0.0000	11741.0	18.19%	9744.0	15.41%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-80	-1.845e+02	0.0000	13203.0	20.45%	11095.8	17.55%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-77	-1.778e+02	0.0000	24849.0	38.49%	22108.6	34.96%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-74	-1.707e+02	0.0000	1547.0	2.40%	920.7	1.46%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-73	-1.696e+02	0.0000	17836.0	27.63%	15493.1	24.50%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-70	-1.619e+02	0.0000	12097.0	18.74%	10187.8	16.11%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-70	-1.616e+02	0.0000	1013.0	1.57%	538.6	0.85%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-68	-1.571e+02	0.0000	5259.0	8.15%	4042.3	6.39%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-68	-1.566e+02	0.0000	27105.0	41.98%	24418.2	38.62%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-67	-1.559e+02	0.0000	5094.0	7.89%	3902.2	6.17%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-65	-1.513e+02	0.0000	4345.0	6.73%	3267.2	5.17%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-64	-1.487e+02	0.0000	6097.0	9.44%	4809.9	7.61%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-61	-1.419e+02	0.0000	5081.0	7.87%	3938.1	6.23%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-60	-1.384e+02	0.0000	3308.0	5.12%	2417.5	3.82%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-59	-1.371e+02	0.0000	18728.0	29.01%	16536.3	26.15%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-57	-1.329e+02	0.0000	12300.0	19.05%	10529.3	16.65%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-55	-1.271e+02	0.0000	12497.0	19.36%	10745.3	16.99%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-50	-1.161e+02	0.0000	5813.0	9.00%	4685.1	7.41%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-49	-1.136e+02	0.0000	891.0	1.38%	509.8	0.81%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-49	-1.132e+02	0.0000	4052.0	6.28%	3137.5	4.96%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-49	-1.131e+02	0.0000	10391.0	16.10%	8873.2	14.03%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-48	-1.127e+02	0.0000	1187.0	1.84%	735.5	1.16%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-48	-1.108e+02	0.0000	11873.0	18.39%	10262.6	16.23%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-48	-1.106e+02	0.0000	20816.0	32.24%	18712.0	29.59%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-46	-1.073e+02	0.0000	3431.0	5.31%	2616.6	4.14%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-45	-1.048e+02	0.0000	1020.0	1.58%	619.0	0.98%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-43	-1.010e+02	0.0000	20331.0	31.49%	18323.0	28.98%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-43	-1.008e+02	0.0000	26156.0	40.51%	23927.5	37.84%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-43	-9.986e+01	0.0000	3652.0	5.66%	2834.3	4.48%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-41	-9.543e+01	0.0000	762.0	1.18%	438.7	0.69%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-41	-9.455e+01	0.0000	25094.0	38.87%	22956.0	36.30%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-41	-9.448e+01	0.0000	12409.0	19.22%	10868.8	17.19%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-40	-9.425e+01	0.0000	10587.0	16.40%	9168.4	14.50%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-40	-9.421e+01	0.0000	10721.0	16.61%	9293.6	14.70%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-40	-9.215e+01	0.0000	26722.0	41.39%	24552.0	38.83%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-39	-9.210e+01	0.0000	9928.0	15.38%	8569.0	13.55%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-39	-9.063e+01	0.0000	6367.0	9.86%	5302.7	8.39%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-38	-8.931e+01	0.0000	9697.0	15.02%	8372.8	13.24%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-37	-8.691e+01	0.0000	5852.0	9.06%	4853.9	7.68%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-36	-8.389e+01	0.0000	25935.0	40.17%	23865.3	37.74%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-34	-7.905e+01	0.0000	2046.0	3.17%	1513.6	2.39%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-33	-7.825e+01	0.0000	39179.0	60.69%	36876.0	58.32%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-33	-7.759e+01	0.0000	39858.0	61.74%	37554.7	59.39%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-31	-7.323e+01	0.0000	5752.0	8.91%	4833.4	7.64%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-31	-7.219e+01	0.0000	9591.0	14.86%	8387.6	13.26%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-30	-7.065e+01	0.0000	11981.0	18.56%	10640.4	16.83%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-30	-6.910e+01	0.0000	12248.0	18.97%	10904.1	17.24%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-29	-6.754e+01	0.0000	1452.0	2.25%	1043.4	1.65%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-29	-6.747e+01	0.0000	18578.0	28.78%	16939.0	26.79%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-29	-6.729e+01	0.0000	8824.0	13.67%	7706.9	12.19%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-29	-6.711e+01	0.0000	10876.0	16.85%	9628.4	15.23%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-28	-6.468e+01	0.0000	7390.0	11.45%	6391.7	10.11%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-27	-6.371e+01	0.0000	7287.0	11.29%	6302.4	9.97%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-27	-6.343e+01	0.0000	5683.0	8.80%	4825.1	7.63%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-26	-6.194e+01	0.0000	41847.0	64.82%	39688.4	62.77%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-26	-6.190e+01	0.0000	6709.0	10.39%	5779.9	9.14%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-26	-6.174e+01	0.0000	11669.0	18.07%	10418.7	16.48%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-26	-6.149e+01	0.0000	2911.0	4.51%	2328.3	3.68%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-26	-6.113e+01	0.0000	4522.0	7.00%	3778.9	5.98%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-25	-5.823e+01	0.0000	3657.0	5.66%	3010.0	4.76%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-24	-5.712e+01	0.0000	22624.0	35.04%	20937.2	33.11%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-23	-5.424e+01	0.0000	7987.0	12.37%	7020.3	11.10%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-23	-5.338e+01	0.0000	8985.0	13.92%	7961.5	12.59%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-22	-5.238e+01	0.0000	2703.0	4.19%	2182.5	3.45%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-22	-5.183e+01	0.0000	5447.0	8.44%	4679.4	7.40%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-22	-5.173e+01	0.0000	5065.0	7.85%	4328.5	6.85%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-21	-4.974e+01	0.0000	9233.0	14.30%	8224.9	13.01%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-20	-4.816e+01	0.0000	11693.0	18.11%	10562.4	16.70%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-20	-4.726e+01	0.0000	22267.0	34.49%	20707.9	32.75%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-20	-4.725e+01	0.0000	1355.0	2.10%	1019.9	1.61%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-20	-4.686e+01	0.0000	1802.0	2.79%	1408.5	2.23%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-20	-4.656e+01	0.0000	7106.0	11.01%	6256.6	9.89%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-19	-4.478e+01	0.0000	7121.0	11.03%	6284.4	9.94%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-19	-4.451e+01	0.0000	41846.0	64.82%	39896.6	63.10%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-18	-4.348e+01	0.0000	17659.0	27.35%	16311.2	25.80%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-18	-4.306e+01	0.0000	6719.0	10.41%	5922.8	9.37%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-18	-4.295e+01	0.0000	2843.0	4.40%	2352.4	3.72%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-18	-4.253e+01	0.0000	16778.0	25.99%	15476.8	24.48%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-18	-4.218e+01	0.0000	32703.0	50.66%	30930.4	48.92%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-18	-4.178e+01	0.0000	9155.0	14.18%	8221.7	13.00%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-18	-4.171e+01	0.0000	10287.0	15.93%	9292.9	14.70%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-17	-4.101e+01	0.0000	7746.0	12.00%	6901.4	10.91%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-16	-3.768e+01	0.0000	2254.0	3.49%	1848.6	2.92%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-16	-3.733e+01	0.0000	2420.0	3.75%	1999.2	3.16%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-15	-3.646e+01	0.0000	3576.0	5.54%	3056.1	4.83%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-15	-3.634e+01	0.0000	12752.0	19.75%	11694.5	18.49%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-15	-3.497e+01	0.0000	16780.0	25.99%	15572.2	24.63%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-14	-3.443e+01	0.0000	2368.0	3.67%	1967.7	3.11%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-14	-3.438e+01	0.0000	10871.0	16.84%	9923.9	15.69%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-14	-3.398e+01	0.0000	3880.0	6.01%	3352.6	5.30%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-14	-3.384e+01	0.0000	3160.0	4.89%	2692.0	4.26%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-14	-3.319e+01	0.0000	16065.0	24.88%	14908.5	23.58%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-13	-3.221e+01	0.0000	1563.0	2.42%	1256.6	1.99%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-13	-3.166e+01	0.0000	100.0	0.15%	41.2	0.07%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-12	-2.970e+01	0.0000	15739.0	24.38%	14642.9	23.16%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-12	-2.957e+01	0.0000	16785.0	26.00%	15651.9	24.75%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-12	-2.830e+01	0.0000	505.0	0.78%	354.2	0.56%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-11	-2.741e+01	0.0000	13788.0	21.36%	12799.8	20.24%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-11	-2.590e+01	0.0000	8214.0	12.72%	7493.4	11.85%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-10	-2.434e+01	0.0000	5338.0	8.27%	4790.7	7.58%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-10	-2.421e+01	0.0000	20738.0	32.12%	19556.5	30.93%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-10	-2.350e+01	0.0000	17835.0	27.63%	16758.5	26.50%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-10	-2.350e+01	0.0000	16005.0	24.79%	14991.9	23.71%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-10	-2.332e+01	0.0000	950.0	1.47%	751.4	1.19%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-10	-2.305e+01	0.0000	3805.0	5.89%	3365.9	5.32%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-9	-2.297e+01	0.0000	582.0	0.90%	433.4	0.69%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-9	-2.293e+01	0.0000	3282.0	5.08%	2879.2	4.55%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-9	-2.147e+01	0.0000	6820.0	10.56%	6221.0	9.84%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-9	-2.106e+01	0.0000	5900.0	9.14%	5354.5	8.47%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-9	-2.103e+01	0.0000	4788.0	7.42%	4305.8	6.81%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-9	-2.103e+01	0.0000	1319.0	2.04%	1090.4	1.72%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-9	-2.103e+01	0.0000	1319.0	2.04%	1090.4	1.72%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-9	-2.088e+01	0.0000	15837.0	24.53%	14872.9	23.52%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-8	-1.942e+01	0.0000	1055.0	1.63%	861.3	1.36%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-8	-1.921e+01	0.0000	10577.0	16.38%	9837.4	15.56%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-8	-1.843e+01	0.0000	275.0	0.43%	189.0	0.30%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-7	-1.831e+01	0.0000	5415.0	8.39%	4926.9	7.79%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-7	-1.814e+01	0.0000	4125.0	6.39%	3710.4	5.87%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-7	-1.813e+01	0.0000	3877.0	6.01%	3477.3	5.50%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-7	-1.786e+01	0.0000	2794.0	4.33%	2466.3	3.90%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-7	-1.765e+01	0.0000	1543.0	2.39%	1312.5	2.08%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-6	-1.537e+01	0.0000	926.0	1.43%	765.9	1.21%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-6	-1.473e+01	0.0000	4504.0	6.98%	4105.3	6.49%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-6	-1.471e+01	0.0000	840.0	1.30%	691.2	1.09%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-6	-1.397e+01	0.0000	2060.0	3.19%	1815.9	2.87%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-5	-1.381e+01	0.0000	1310.0	2.03%	1123.6	1.78%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-5	-1.366e+01	0.0000	3679.0	5.70%	3337.5	5.28%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-5	-1.326e+01	0.0000	1281.0	1.98%	1100.2	1.74%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-5	-1.282e+01	0.0000	3933.0	6.09%	3587.5	5.67%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-5	-1.268e+01	0.0000	2852.0	4.42%	2568.0	4.06%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-5	-1.254e+01	0.0000	4566.0	7.07%	4191.3	6.63%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-5	-1.219e+01	0.0000	5656.0	8.76%	5234.7	8.28%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-4	-1.141e+01	0.0000	9726.0	15.07%	9153.0	14.48%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-4	-1.103e+01	0.0000	4959.0	7.68%	4586.1	7.25%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-4	-1.074e+01	0.0000	30893.0	47.85%	29749.9	47.05%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-4	-1.069e+01	0.0000	11392.0	17.65%	10774.4	17.04%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-4	-1.063e+01	0.0001	10190.0	15.78%	9615.7	15.21%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-4	-1.033e+01	0.0001	3584.0	5.55%	3287.9	5.20%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-4	-9.957e+00	0.0001	1194.0	1.85%	1043.1	1.65%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-4	-9.936e+00	0.0001	2234.0	3.46%	2015.9	3.19%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-4	-9.807e+00	0.0001	2378.0	3.68%	2152.4	3.40%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-4	-9.211e+00	0.0002	1649.0	2.55%	1473.8	2.33%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-9.132e+00	0.0002	160.0	0.25%	115.4	0.18%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-3	-8.974e+00	0.0003	7552.0	11.70%	7107.6	11.24%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-3	-8.851e+00	0.0003	40141.0	62.18%	38876.1	61.48%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-3	-8.669e+00	0.0004	4656.0	7.21%	4333.1	6.85%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-8.586e+00	0.0004	8233.0	12.75%	7771.7	12.29%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-3	-8.480e+00	0.0004	703.0	1.09%	601.1	0.95%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-3	-8.476e+00	0.0004	424.0	0.66%	348.5	0.55%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-3	-8.272e+00	0.0005	1229.0	1.90%	1089.4	1.72%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-3	-8.081e+00	0.0006	1921.0	2.98%	1740.8	2.75%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-3	-7.706e+00	0.0009	595.0	0.92%	507.2	0.80%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-3	-7.543e+00	0.0011	19835.0	30.72%	19052.7	30.13%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-3	-7.274e+00	0.0014	175.0	0.27%	133.6	0.21%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-3	-7.207e+00	0.0015	596.0	0.92%	511.6	0.81%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-3	-7.108e+00	0.0016	850.0	1.32%	746.1	1.18%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-3	-6.982e+00	0.0018	160.0	0.25%	121.9	0.19%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-2	-6.117e+00	0.0043	1131.0	1.75%	1017.1	1.61%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-2	-5.993e+00	0.0049	896.0	1.39%	798.7	1.26%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-5.671e+00	0.0066	1571.0	2.43%	1437.7	2.27%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-5.671e+00	0.0066	1571.0	2.43%	1437.7	2.27%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-5.609e+00	0.0070	6823.0	10.57%	6479.9	10.25%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-2	-5.489e+00	0.0079	221.0	0.34%	180.7	0.29%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-5.162e+00	0.0109	9559.0	14.81%	9140.4	14.46%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-4.826e+00	0.0152	2842.0	4.40%	2662.6	4.21%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-4.556e+00	0.0198	16326.0	25.29%	15742.0	24.90%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-4.499e+00	0.0209	2477.0	3.84%	2318.5	3.67%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.398e+00	0.0230	3095.0	4.79%	2913.1	4.61%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-4.385e+00	0.0232	1070.0	1.66%	978.1	1.55%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-4.219e+00	0.0273	521.0	0.81%	463.7	0.73%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-4.136e+00	0.0295	10135.0	15.70%	9733.2	15.39%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-4.074e+00	0.0313	2545.0	3.94%	2391.9	3.78%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-4.050e+00	0.0319	1502.0	2.33%	1394.0	2.20%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-1	-3.939e+00	0.0355	10749.0	16.65%	10337.6	16.35%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.465e+00	0.0568	2184.0	3.38%	2056.8	3.25%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-3.184e+00	0.0750	4690.0	7.26%	4482.8	7.09%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.053e+00	0.0851	74.0	0.11%	59.2	0.09%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-1	-2.833e+00	0.1057	15124.0	23.43%	14648.9	23.17%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-2.756e+00	0.1137	19217.0	29.77%	18648.2	29.49%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-1	-2.713e+00	0.1182	14647.0	22.69%	14189.6	22.44%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-2.696e+00	0.1197	4075.0	6.31%	3901.5	6.17%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.655e+00	0.1242	4844.0	7.50%	4648.5	7.35%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-1	-2.492e+00	0.1456	4934.0	7.64%	4741.2	7.50%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.351e+00	0.1671	4625.0	7.16%	4446.6	7.03%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.347e+00	0.1671	509.0	0.79%	470.3	0.74%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.248e+00	0.1836	513.0	0.79%	475.1	0.75%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-2.225e+00	0.1872	66.0	0.10%	56.0	0.09%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.029e+00	0.2268	600.0	0.93%	561.8	0.89%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.991e+00	0.2347	3302.0	5.11%	3174.6	5.02%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.940e+00	0.2460	21212.0	32.86%	20651.1	32.66%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.792e+00	0.2843	14719.0	22.80%	14315.3	22.64%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.769e+00	0.2895	5369.0	8.32%	5193.9	8.21%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.735e+00	0.2985	8166.0	12.65%	7921.9	12.53%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.729e+00	0.2993	7092.0	10.99%	6874.0	10.87%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.672e+00	0.3154	88.0	0.14%	78.5	0.12%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.642e+00	0.3239	598.0	0.93%	565.1	0.89%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.603e+00	0.3354	2125.0	3.29%	2044.0	3.23%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.512e+00	0.3662	13547.0	20.98%	13190.1	20.86%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.458e+00	0.3849	9456.0	14.65%	9197.1	14.55%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.369e+00	0.4190	1753.0	2.72%	1690.7	2.67%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.278e+00	0.4575	62.0	0.10%	56.4	0.09%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.244e+00	0.4715	732.0	1.13%	702.4	1.11%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.192e+00	0.4948	355.0	0.55%	338.6	0.54%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.178e+00	0.4998	118.0	0.18%	110.8	0.18%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.093e+00	0.5420	3614.0	5.60%	3515.5	5.56%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.087e+00	0.5437	3629.0	5.62%	3530.4	5.58%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-9.257e-01	0.6363	73.0	0.11%	69.9	0.11%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-9.171e-01	0.6395	931.0	1.44%	904.5	1.43%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-8.534e-01	0.6791	4604.0	7.13%	4497.5	7.11%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-8.024e-01	0.7120	828.0	1.28%	807.2	1.28%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-8.001e-01	0.7120	1142.0	1.77%	1114.2	1.76%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-7.896e-01	0.7160	5900.0	9.14%	5770.9	9.13%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.731e-01	0.7253	6012.0	9.31%	5881.2	9.30%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.922e-01	0.7837	16418.0	25.43%	16080.2	25.43%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.428e-01	0.8205	10283.0	15.93%	10077.7	15.94%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.333e-01	0.8253	973.0	1.51%	955.9	1.51%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.808e-01	0.8668	4784.0	7.41%	4695.7	7.43%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.580e-01	0.9766	970.0	1.50%	960.9	1.52%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.343e-01	0.9965	178.0	0.28%	179.7	0.28%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.225e-01	1.0000	2588.0	4.01%	2554.7	4.04%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.928e-01	1.0000	3693.0	5.72%	3643.8	5.76%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-3.838e-01	1.0000	740.0	1.15%	737.4	1.17%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.277e-01	1.0000	12183.0	18.87%	11989.2	18.96%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.646e-01	1.0000	970.0	1.50%	972.3	1.54%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.223e-01	1.0000	297.0	0.46%	305.6	0.48%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.147e-01	1.0000	6437.0	9.97%	6369.5	10.07%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.444e-01	1.0000	6368.0	9.86%	6319.0	9.99%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.073e-01	1.0000	28324.0	43.87%	27898.1	44.12%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-9.962e-02	1.0000	4135.0	6.40%	4130.9	6.53%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-9.420e-02	1.0000	4208.0	6.52%	4204.1	6.65%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-9.081e-02	1.0000	434.0	0.67%	453.7	0.72%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-8.910e-02	1.0000	162.0	0.25%	176.9	0.28%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-8.176e-02	1.0000	3599.0	5.57%	3606.8	5.70%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-7.526e-02	1.0000	13849.0	21.45%	13713.1	21.69%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-6.945e-02	1.0000	440.0	0.68%	462.0	0.73%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-6.677e-02	1.0000	29543.0	45.76%	29123.8	46.06%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.738e-02	1.0000	588.0	0.91%	614.8	0.97%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-3.856e-02	1.0000	23132.0	35.83%	22868.7	36.17%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-3.429e-02	1.0000	38845.0	60.17%	38268.3	60.52%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.522e-02	1.0000	3875.0	6.00%	3912.6	6.19%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.148e-02	1.0000	7950.0	12.31%	7953.4	12.58%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-2.103e-02	1.0000	12337.0	19.11%	12283.7	19.43%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.890e-02	1.0000	17465.0	27.05%	17336.3	27.42%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.621e-02	1.0000	270.0	0.42%	300.5	0.48%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.404e-02	1.0000	1389.0	2.15%	1441.0	2.28%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.382e-02	1.0000	189.0	0.29%	216.5	0.34%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-9.753e-03	1.0000	3489.0	5.40%	3550.1	5.61%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-7.819e-03	1.0000	3327.0	5.15%	3393.5	5.37%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-7.498e-03	1.0000	11107.0	17.20%	11108.5	17.57%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.118e-03	1.0000	3273.0	5.07%	3344.6	5.29%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.865e-03	1.0000	7754.0	12.01%	7805.7	12.34%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-4.595e-03	1.0000	2008.0	3.11%	2082.0	3.29%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-4.362e-03	1.0000	3870.0	5.99%	3947.8	6.24%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.865e-03	1.0000	940.0	1.46%	1002.7	1.59%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.168e-03	1.0000	4863.0	7.53%	4944.1	7.82%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.893e-03	1.0000	27963.0	43.31%	27728.5	43.85%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.735e-03	1.0000	6003.0	9.30%	6082.6	9.62%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.465e-03	1.0000	912.0	1.41%	978.8	1.55%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-2.359e-03	1.0000	1287.0	1.99%	1361.6	2.15%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.026e-03	1.0000	8219.0	12.73%	8290.7	13.11%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.792e-03	1.0000	508.0	0.79%	564.1	0.89%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.810e-04	1.0000	2004.0	3.10%	2099.5	3.32%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-9.590e-04	1.0000	3802.0	5.89%	3908.7	6.18%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-8.160e-04	1.0000	12872.0	19.94%	12922.3	20.44%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-5.820e-04	1.0000	3571.0	5.53%	3685.0	5.83%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.770e-04	1.0000	3114.0	4.82%	3226.9	5.10%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.570e-04	1.0000	1288.0	2.00%	1380.8	2.18%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-2.940e-04	1.0000	26108.0	40.44%	25991.6	41.11%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.380e-04	1.0000	1191.0	1.84%	1287.4	2.04%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.180e-04	1.0000	7894.0	12.23%	8022.0	12.69%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-1.310e-04	1.0000	9510.0	14.73%	9639.8	15.25%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.160e-04	1.0000	20491.0	31.74%	20497.5	32.42%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-9.100e-05	1.0000	23239.0	36.00%	23209.4	36.71%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.300e-05	1.0000	2712.0	4.20%	2854.9	4.52%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-2.100e-05	1.0000	12311.0	19.07%	12461.9	19.71%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.600e-05	1.0000	837.0	1.30%	942.4	1.49%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.400e-05	1.0000	1038.0	1.61%	1153.6	1.82%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-9.000e-06	1.0000	18894.0	29.27%	18993.0	30.04%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-9.000e-06	1.0000	1182.0	1.83%	1306.9	2.07%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.000e-06	1.0000	855.0	1.32%	967.4	1.53%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.000e-06	1.0000	315.0	0.49%	390.1	0.62%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-6.000e-06	1.0000	9507.0	14.73%	9700.2	15.34%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.000e-06	1.0000	2519.0	3.90%	2684.5	4.25%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.000e-06	1.0000	1816.0	2.81%	1967.6	3.11%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.000e-06	1.0000	14582.0	22.59%	14780.0	23.37%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.000e-06	1.0000	5252.0	8.14%	5477.9	8.66%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.000e-06	1.0000	19813.0	30.69%	19964.8	31.57%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	7540.0	11.68%	7798.8	12.33%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-0.000e+00	1.0000	7539.0	11.68%	7815.9	12.36%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-0.000e+00	1.0000	5201.0	8.06%	5488.6	8.68%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-0.000e+00	1.0000	583.0	0.90%	719.3	1.14%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-0.000e+00	1.0000	13964.0	21.63%	14281.1	22.59%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	15262.0	23.64%	15573.7	24.63%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-0.000e+00	1.0000	18859.0	29.21%	19140.1	30.27%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-0.000e+00	1.0000	36990.0	57.30%	36957.9	58.45%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-0.000e+00	1.0000	3615.0	5.60%	3892.6	6.16%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-0.000e+00	1.0000	1293.0	2.00%	1488.6	2.35%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	5559.0	8.61%	5894.9	9.32%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-0.000e+00	1.0000	8919.0	13.82%	9285.8	14.69%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-0.000e+00	1.0000	8353.0	12.94%	8719.1	13.79%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-0.000e+00	1.0000	20787.0	32.20%	21102.8	33.37%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	22623.0	35.04%	22952.0	36.30%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-0.000e+00	1.0000	1931.0	2.99%	2195.3	3.47%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-0.000e+00	1.0000	1814.0	2.81%	2073.7	3.28%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-0.000e+00	1.0000	2823.0	4.37%	3140.6	4.97%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	32016.0	49.59%	32290.7	51.07%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-0.000e+00	1.0000	10267.0	15.90%	10770.2	17.03%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-0.000e+00	1.0000	2268.0	3.51%	2594.3	4.10%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	594.0	0.92%	786.9	1.24%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-0.000e+00	1.0000	6561.0	10.16%	7029.4	11.12%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	12570.0	19.47%	13095.7	20.71%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-0.000e+00	1.0000	10677.0	16.54%	11218.6	17.74%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	0.000e+00	1.0000	11345.0	17.57%	12390.9	19.60%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	0.000e+00	1.0000	8422.0	13.05%	9623.2	15.22%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	0.000e+00	1.0000	5600.0	8.67%	6564.9	10.38%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	28052.0	43.45%	31635.1	50.03%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	0.000e+00	1.0000	8606.0	13.33%	9500.7	15.03%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	15425.0	23.89%	17046.5	26.96%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	0.000e+00	1.0000	17705.0	27.42%	19046.0	30.12%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	32778.0	50.77%	36624.3	57.92%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	11676.0	18.09%	12477.5	19.73%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	15168.0	23.49%	16827.8	26.61%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	15135.0	23.44%	17304.0	27.37%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	0.000e+00	1.0000	28872.0	44.72%	30107.3	47.61%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	9084.0	14.07%	10840.9	17.14%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	12177.0	18.86%	16648.7	26.33%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	20050.0	31.06%	24789.9	39.21%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	19533.0	30.26%	20866.4	33.00%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	0.000e+00	1.0000	32614.0	50.52%	33727.0	53.34%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	0.000e+00	1.0000	11771.0	18.23%	13759.1	21.76%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	0.000e+00	1.0000	6048.0	9.37%	6960.2	11.01%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	0.000e+00	1.0000	3233.0	5.01%	4047.0	6.40%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	0.000e+00	1.0000	2855.0	4.42%	3632.5	5.74%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	0.000e+00	1.0000	9290.0	14.39%	10496.0	16.60%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	8672.0	13.43%	11329.1	17.92%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	897.0	1.39%	2361.5	3.73%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	7771.0	12.04%	10914.8	17.26%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	15459.0	23.95%	18317.2	28.97%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	9425.0	14.60%	12750.3	20.16%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	0.000e+00	1.0000	45879.0	71.07%	47298.3	74.80%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	32838.0	50.87%	35646.2	56.37%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	23285.0	36.07%	26205.1	41.44%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	27608.0	42.76%	29404.9	46.50%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	0.000e+00	1.0000	38416.0	59.51%	39167.5	61.94%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	12331.0	19.10%	13289.5	21.02%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	0.000e+00	1.0000	6919.0	10.72%	8252.3	13.05%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	13912.0	21.55%	15674.8	24.79%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	2592.0	4.01%	3852.7	6.09%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	47163.0	73.05%	50872.3	80.45%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	0.000e+00	1.0000	6705.0	10.39%	7314.5	11.57%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	27050.0	41.90%	27926.1	44.16%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	32577.0	50.46%	35353.6	55.91%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	0.000e+00	1.0000	1292.0	2.00%	1590.1	2.51%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	0.000e+00	1.0000	12552.0	19.44%	13230.2	20.92%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	0.000e+00	1.0000	10538.0	16.32%	11152.8	17.64%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	0.000e+00	1.0000	3688.0	5.71%	4349.1	6.88%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	9378.0	14.53%	12106.5	19.15%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	5553.0	8.60%	7324.0	11.58%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	2242.0	3.47%	3010.5	4.76%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	1434.0	2.22%	2296.2	3.63%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	0.000e+00	1.0000	14971.0	23.19%	16128.4	25.51%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	13775.0	21.34%	15423.0	24.39%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	34505.0	53.45%	37460.6	59.24%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	0.000e+00	1.0000	13754.0	21.30%	14850.2	23.49%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	0.000e+00	1.0000	5501.0	8.52%	7030.1	11.12%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	4487.0	6.95%	6384.4	10.10%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	0.000e+00	1.0000	39805.0	61.66%	40181.4	63.55%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	0.000e+00	1.0000	3459.0	5.36%	3916.7	6.19%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	0.000e+00	1.0000	22947.0	35.54%	24316.3	38.46%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	19730.0	30.56%	21486.4	33.98%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	10375.0	16.07%	12176.1	19.26%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	1798.0	2.79%	2227.5	3.52%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	15208.0	23.56%	16368.5	25.89%