Information for 3-GGAGTGACCG (Motif 2)

A C T G A T C G C G T A A T C G C G A T C T A G C G T A G T A C A T G C A C T G
Reverse Opposite:
G T A C A T C G A C T G A C G T A G T C C G T A A T G C A C G T A T G C A G T C
p-value:1e-11
log p-value:-2.554e+01
Information Content per bp:1.861
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif4.91%
Number of Background Sequences with motif111.0
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets95.6 +/- 53.3bp
Average Position of motif in Background92.3 +/- 59.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GGAGTGACCG
GTGGCGTGACNG
 A C G T A C G T A C T G A T C G C G T A A T C G C G A T C T A G C G T A G T A C A T G C A C T G
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

PKNOX1/MA0782.2/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GGAGTGACCG---
TTTGAGTGACAGCTA
 A C G T A C G T A C T G A T C G C G T A A T C G C G A T C T A G C G T A G T A C A T G C A C T G A C G T A C G T A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

PBX3/MA1114.1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GGAGTGACCG----
GGGTGAGTGACAGGCGG
 A C G T A C G T A C G T A C T G A T C G C G T A A T C G C G A T C T A G C G T A G T A C A T G C A C T G A C G T A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

PAX5/MA0014.3/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGAGTGACCG-
GAGCGTGACCCC
 A C G T A C T G A T C G C G T A A T C G C G A T C T A G C G T A G T A C A T G C A C T G A C G T
T C A G C T G A T A C G A G T C T C A G G C A T T A C G C T G A T A G C A G T C G T A C A G T C

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGAGTGACCG
ATGGGGTGAT--
 A C G T A C G T A C T G A T C G C G T A A T C G C G A T C T A G C G T A G T A C A T G C A C T G
T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T A C G T

NR1H4/MA1110.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGAGTGACCG-
TCAATGACCTA
 A C T G A T C G C G T A A T C G C G A T C T A G C G T A G T A C A T G C A C T G A C G T
A C G T A G T C C G T A C T G A A G C T C T A G G T C A G T A C G T A C A G C T G C T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGAGTGACCG-
NTGATTGACAGN
 A C G T A C T G A T C G C G T A A T C G C G A T C T A G C G T A G T A C A T G C A C T G A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGAGTGACCG--
TGAGTGACAGSC
 A C T G A T C G C G T A A T C G C G A T C T A G C G T A G T A C A T G C A C T G A C G T A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

MGA/MA0801.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGAGTGACCG
AGGTGTGA---
 A C G T A C T G A T C G C G T A A T C G C G A T C T A G C G T A G T A C A T G C A C T G
C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGAGTGACCG
ATGGGGTGAT--
 A C G T A C G T A C T G A T C G C G T A A T C G C G A T C T A G C G T A G T A C A T G C A C T G
T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T A C G T