Information for 8-GAGTGATGAC (Motif 6)

T C A G C G T A A C T G A C G T A C T G C T G A A C G T A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C G T C A A G C T A G T C G T C A T G A C A C G T A G T C
p-value:1e-8
log p-value:-2.029e+01
Information Content per bp:1.865
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif4.46%
Number of Background Sequences with motif139.7
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets113.0 +/- 64.1bp
Average Position of motif in Background90.1 +/- 59.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GAGTGATGAC---
-GGTGYTGACAGS
 T C A G C G T A A C T G A C G T A C T G C T G A A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGATGAC
ATGATKGATGRC
 A C G T A C G T T C A G C G T A A C T G A C G T A C T G C T G A A C G T A C T G C G T A A G T C
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAGTGATGAC-
TGATTRATGGCY
 A C G T T C A G C G T A A C T G A C G T A C T G C T G A A C G T A C T G C G T A A G T C A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGATGAC
NNTGATTGATGNN
 A C G T A C G T A C G T T C A G C G T A A C T G A C G T A C T G C T G A A C G T A C T G C G T A A G T C
C G T A C G T A C G A T C A T G C G T A C G A T C A G T C A T G G T C A G A C T C T A G C T G A G A T C

Mafb/MA0117.2/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GAGTGATGAC-
AAAATGCTGACT
 A C G T T C A G C G T A A C T G A C G T A C T G C T G A A C G T A C T G C G T A A G T C A C G T
C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GAGTGATGAC
TGATKGATGR-
 A C G T T C A G C G T A A C T G A C G T A C T G C T G A A C G T A C T G C G T A A G T C
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAGTGATGAC
TGATTGATGA-
 A C G T T C A G C G T A A C T G A C G T A C T G C T G A A C G T A C T G C G T A A G T C
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

MAFF/MA0495.3/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GAGTGATGAC--
NNNAAAATGCTGACTN
 A C G T A C G T A C G T A C G T T C A G C G T A A C T G A C G T A C T G C T G A A C G T A C T G C G T A A G T C A C G T A C G T
C G T A C G T A C G T A C G T A C G T A C G T A G C T A G C A T T C A G G T A C G C A T C A T G G C T A A T G C G C A T G A C T

MAFG/MA0659.2/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGATGAC--
NAAAAATGCTGACTC
 A C G T A C G T A C G T T C A G C G T A A C T G A C G T A C T G C T G A A C G T A C T G C G T A A G T C A C G T A C G T
C G T A C T G A C T G A C G T A C G T A G C T A G C A T C T A G T G A C G C A T C A T G G C T A A T G C G C A T G A T C

NRL/MA0842.2/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAGTGATGAC-
AAAAGTGCTGACG
 A C G T A C G T T C A G C G T A A C T G A C G T A C T G C T G A A C G T A C T G C G T A A G T C A C G T
C T G A C G T A C G T A G C T A C T A G G A C T C T A G T G A C A G C T C A T G C T G A A G T C C T A G