Information for 4-CATGCATC (Motif 4)

A G T C C G T A A C G T T A C G A G T C C G T A A G C T A G T C
Reverse Opposite:
C T A G T C G A A C G T A C T G A T G C C G T A A C G T A C T G
p-value:1e-3
log p-value:-8.280e+00
Information Content per bp:1.847
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif1097.5
Percentage of Background Sequences with motif2.20%
Average Position of motif in Targets57.1 +/- 28.1bp
Average Position of motif in Background49.6 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CATGCATC--
GYCATCMATCAT
 A C G T A C G T A G T C C G T A A C G T T A C G A G T C C G T A A G C T A G T C A C G T A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CATGCATC-
YCATCMATCA
 A C G T A G T C C G T A A C G T T A C G A G T C C G T A A G C T A G T C A C G T
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

MEIS1(var.2)/MA1639.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CATGCATC---
GTCATCAATCATT
 A C G T A C G T A G T C C G T A A C G T T A C G A G T C C G T A A G C T A G T C A C G T A C G T A C G T
C T A G G A C T G A T C C T G A C A G T G T A C G T C A G C T A G C A T G T A C G C T A G C A T G C A T

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CATGCATC----
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T T A C G A G T C C G T A A G C T A G T C A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CATGCATC-
TCATCAATCA
 A C G T A G T C C G T A A C G T T A C G A G T C C G T A A G C T A G T C A C G T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CATGCATC-
RGCCATYAATCA
 A C G T A C G T A C G T A G T C C G T A A C G T T A C G A G T C C G T A A G C T A G T C A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CATGCATC-----
ACATTCATGACACG
 A C G T A G T C C G T A A C G T T A C G A G T C C G T A A G C T A G T C A C G T A C G T A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CATGCATC--------
TCACCCATCAATAAACA
 A C G T A G T C C G T A A C G T T A C G A G T C C G T A A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CATGCATC
GHATATKCAT-
 A C G T A C G T A C G T A G T C C G T A A C G T T A C G A G T C C G T A A G C T A G T C
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

MEIS2(var.2)/MA1640.1/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CATGCATC----
NNCCATAAATCATNN
 A C G T A C G T A C G T A G T C C G T A A C G T T A C G A G T C C G T A A G C T A G T C A C G T A C G T A C G T A C G T
C T G A T C A G G A T C G T A C T C G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G C A T G C A T G A C T