chr1	42858971	42858972	+	gene_id novel_gene_chr1_75530; transcript_id transcript75529.chr1.nnic; exons 1; Canonical Unspliced;
chr1	231832408	231832409	+	gene_id ENSG00000162946.21; transcript_id transcript235014.chr1.nnic; similar_reference_id ENST00000366636.8; alternatives alternative_structure_novel:231832593-231832837,231832901-231866522,alternative_polya_site_right:231866826; exons 3; Canonical False;
chr1	231833099	231833100	+	gene_id novel_gene_chr1_235048; transcript_id transcript235047.chr1.nnic; exons 1; Canonical Unspliced;
chr3	44349057	44349058	+	gene_id novel_gene_chr3_30149; transcript_id transcript30148.chr3.nnic; exons 1; Canonical Unspliced;
chr3	124753190	124753191	+	gene_id novel_gene_chr3_83358; transcript_id transcript83357.chr3.nnic; exons 1; Canonical Unspliced;
chr6	158888429	158888430	+	gene_id ENSG00000203711.11; transcript_id transcript110294.chr6.nnic; similar_reference_id ENST00000367073.5; alternatives alternative_structure_novel:158888692-158895225,correct_polya_site_right:158910352; exons 3; Canonical False;
chr10	100384329	100384330	+	gene_id novel_gene_chr10_76971; transcript_id transcript76970.chr10.nnic; similar_reference_id ENST00000641708.1; alternatives incomplete_intron_retention_5:100381449-100388036,tes_match_precise:-2,correct_polya_site_right:100388358; exons 1; Canonical Unspliced;
chr11	7914117	7914118	+	gene_id novel_gene_chr11_11591; transcript_id transcript11590.chr11.nnic; exons 1; Canonical Unspliced;
chr12	80783710	80783711	+	gene_id novel_gene_chr12_89566; transcript_id transcript89565.chr12.nnic; exons 1; Canonical Unspliced;
chr16	18991524	18991525	+	gene_id novel_gene_chr16_24797; transcript_id transcript24796.chr16.nnic; exons 1; Canonical Unspliced;
chr19	55128437	55128438	+	gene_id novel_gene_chr19_118017; transcript_id transcript118016.chr19.nnic; exons 1; Canonical Unspliced;
chrX	57219329	57219330	+	gene_id novel_gene_chrX_26854; transcript_id transcript26853.chrX.nnic; exons 3; Canonical False;
chrX	103431537	103431538	+	gene_id novel_gene_chrX_41929; transcript_id transcript41928.chrX.nnic; exons 1; Canonical Unspliced;
chr1	37860697	37947056	-	gene_id ENSG00000204084.12; transcript_id ENST00000373023.6; exons 24; Canonical False;
chr1	37860697	37931780	-	gene_id ENSG00000204084.12; transcript_id transcript67132.chr1.nnic; similar_reference_id ENST00000373023.6; alternatives alternative_structure_novel:37860831-37889612,tes_match_precise:0,correct_polya_site_left:37860697; exons 4; Canonical False;
chr1	37862085	37947050	-	gene_id ENSG00000204084.12; transcript_id ENST00000373024.7; exons 24; Canonical False;
chr1	37912563	37912857	-	gene_id novel_gene_chr1_67212; transcript_id transcript67211.chr1.nnic; exons 1; Canonical Unspliced;
chr1	41506365	41918706	-	gene_id ENSG00000127124.14; transcript_id ENST00000372584.5; exons 8; Canonical True;
chr1	93783531	93847222	-	gene_id ENSG00000137936.16; transcript_id transcript120233.chr1.nnic; similar_reference_id ENST00000469315.1; alternatives alternative_structure_novel:93784192-93845566,extra_intron_5:93845713-93847069,alternative_polya_site_left:93783531; exons 3; Canonical False;
chr2	58113476	58315715	-	gene_id ENSG00000115392.11; transcript_id transcript45795.chr2.nnic; exons 3; Canonical False;
chr2	58113476	58315715	-	gene_id novel_gene_chr2_46062; transcript_id transcript46061.chr2.nnic; exons 3; Canonical False;
chr2	67175148	67398124	-	gene_id ENSG00000236780.5; transcript_id transcript53693.chr2.nnic; similar_reference_id ENST00000414404.1; alternatives alternative_structure_novel:67205564-67321804,extra_intron_5:67325233-67397919,extra_intron_5:67324485-67325084,extra_intron_5:67321845-67324404,alternative_polya_site_left:67175148; exons 8; Canonical False;
chr2	191950017	192195708	-	gene_id ENSG00000144339.11; transcript_id ENST00000272771.9; exons 10; Canonical True;
chr2	191949043	192194915	-	gene_id ENSG00000144339.11; transcript_id ENST00000392314.5; exons 10; Canonical True;
chr2	215025619	215138669	-	gene_id ENSG00000144452.14; transcript_id transcript148102.chr2.nic; similar_reference_id ENST00000272895.11; alternatives incomplete_intron_retention_3:215019797-215025672,major_exon_elongation_5:242,alternative_polya_site_left:215025619; exons 11; Canonical True;
chr2	214931542	215138427	-	gene_id ENSG00000144452.14; transcript_id ENST00000272895.11; exons 53; Canonical False;
chr3	48693456	48740352	-	gene_id ENSG00000068745.14; transcript_id ENST00000433104.2; exons 9; Canonical False;
chr3	58565461	58627609	-	gene_id ENSG00000168309.16; transcript_id ENST00000474531.5; exons 5; Canonical True;
chr3	90041112	90093188	-	gene_id novel_gene_chr3_66188; transcript_id transcript66187.chr3.nnic; exons 6; Canonical False;
chr3	90041112	90093188	-	gene_id novel_gene_chr3_66188; transcript_id transcript66190.chr3.nnic; exons 5; Canonical False;
chr3	90071618	90093188	-	gene_id novel_gene_chr3_66188; transcript_id transcript66198.chr3.nnic; exons 4; Canonical False;
chr3	93873033	93974065	-	gene_id ENSG00000184500.14; transcript_id ENST00000394236.7; exons 15; Canonical True;
chr3	125827240	125915813	-	gene_id ENSG00000241288.7; transcript_id transcript84469.chr3.nnic; similar_reference_id ENST00000487446.1; alternatives extra_intron_known:125827456-125848229,alternative_structure_novel:125848448-125853325,125853488-125915652; exons 4; Canonical False;
chr3	125827263	125915772	-	gene_id ENSG00000241288.7; transcript_id transcript84472.chr3.nnic; similar_reference_id ENST00000625484.1; alternatives alternative_structure_novel:125827456-125861703,125861822-125862815,125863114-125915652,tss_match:44,exon_elongation_5:44,alternative_polya_site_left:125827263; exons 4; Canonical False;
chr3	125827240	125915772	-	gene_id ENSG00000241288.7; transcript_id transcript84504.chr3.nnic; similar_reference_id ENST00000487446.1; alternatives extra_intron_known:125827456-125848229,alternative_structure_novel:125848448-125915652; exons 3; Canonical False;
chr3	125862574	125887334	-	gene_id ENSG00000241288.7; transcript_id ENST00000468859.1; exons 2; Canonical True;
chr3	143570453	143848491	-	gene_id ENSG00000181804.14; transcript_id transcript102181.chr3.nnic; similar_reference_id ENST00000316549.10; alternatives alternative_structure_novel:143572240-143573269,143573345-143574087,tss_match:-39,alternative_polya_site_left:143570453; exons 10; Canonical True;
chr3	143570453	143848491	-	gene_id ENSG00000181804.14; transcript_id transcript102186.chr3.nnic; similar_reference_id ENST00000316549.10; alternatives alternative_structure_novel:143572240-143574087,tss_match:-39,alternative_polya_site_left:143570453; exons 9; Canonical True;
chr3	143745289	143848491	-	gene_id ENSG00000181804.14; transcript_id transcript102195.chr3.nnic; similar_reference_id ENST00000474727.2; alternatives terminal_exon_shift_novel:143745929-143795000,exon_gain_known:143796904-143832018,143832222-143848147,tss_match:7,exon_elongation_5:7,alternative_polya_site_left:143745289; exons 5; Canonical False;
chr3	143794322	143848491	-	gene_id ENSG00000181804.14; transcript_id transcript102200.chr3.nic; similar_reference_id ENST00000474151.1; alternatives exon_gain_known:143795078-143796825,143796904-143832018,tss_match:34,exon_elongation_5:34,alternative_polya_site_left:143794322; exons 4; Canonical True;
chr3	143265222	143848530	-	gene_id ENSG00000181804.14; transcript_id ENST00000316549.10; exons 16; Canonical True;
chr3	150541998	150603173	-	gene_id ENSG00000120742.10; transcript_id ENST00000479209.1; exons 4; Canonical True;
chr3	150565786	150603215	-	gene_id ENSG00000120742.10; transcript_id transcript107134.chr3.nnic; similar_reference_id ENST00000490945.1; alternatives exon_gain_novel:150567107-150573908,150574046-150602943,tes_match:10,tss_match:-12,correct_polya_site_left:150565786; exons 3; Canonical False;
chr3	150565786	150603224	-	gene_id ENSG00000120742.10; transcript_id transcript107135.chr3.nnic; similar_reference_id ENST00000490945.1; alternatives exon_gain_novel:150567107-150573908,150574160-150602943,tes_match:10,tss_match_precise:-3,correct_polya_site_left:150565786; exons 3; Canonical False;
chr3	150565793	150603219	-	gene_id ENSG00000120742.10; transcript_id transcript107137.chr3.nnic; similar_reference_id ENST00000490945.1; alternatives exon_gain_novel:150567107-150583116,150583203-150602943,tes_match_precise:3,tss_match:-8,correct_polya_site_left:150565793; exons 3; Canonical True;
chr3	150565793	150603215	-	gene_id ENSG00000120742.10; transcript_id transcript107138.chr3.nnic; similar_reference_id ENST00000490945.1; alternatives exon_gain_novel:150567107-150583116,150583251-150602943,tes_match_precise:3,tss_match:-12,correct_polya_site_left:150565793; exons 3; Canonical True;
chr3	150565799	150603235	-	gene_id ENSG00000120742.10; transcript_id transcript107143.chr3.nnic; similar_reference_id ENST00000490945.1; alternatives extra_intron_novel:150566118-150566900,tes_match_precise:-3,tss_match:8,exon_elongation_5:8,correct_polya_site_left:150565799; exons 3; Canonical False;
chr3	150582996	150603215	-	gene_id ENSG00000120742.10; transcript_id transcript107212.chr3.nnic; exons 2; Canonical True;
chr3	150565796	150603227	-	gene_id ENSG00000120742.10; transcript_id ENST00000490945.1; exons 2; Canonical True;
chr4	3921383	3929727	-	gene_id ENSG00000271977.1; transcript_id transcript6169.chr4.nnic; similar_reference_id ENST00000514073.1; alternatives incomplete_intron_retention_3:3917902-3921627,alternative_structure_novel:3924268-3929541,alternative_polya_site_left:3921383; exons 3; Canonical False;
chr4	3921383	3940214	-	gene_id ENSG00000271977.1; transcript_id transcript6171.chr4.nnic; similar_reference_id ENST00000514073.1; alternatives incomplete_intron_retention_3:3917902-3921627,alternative_structure_novel:3924268-3940011,alternative_polya_site_left:3921383; exons 3; Canonical True;
chr4	9034576	9153059	-	gene_id ENSG00000250342.1; transcript_id transcript9408.chr4.nnic; exons 4; Canonical False;
chr4	54009789	54064689	-	gene_id ENSG00000109220.10; transcript_id ENST00000263921.7; exons 6; Canonical True;
chr4	86431263	86594094	-	gene_id ENSG00000109339.20; transcript_id transcript43709.chr4.nnic; exons 3; Canonical False;
chr4	88092168	88158893	-	gene_id ENSG00000118777.10; transcript_id transcript44856.chr4.nic; similar_reference_id ENST00000515655.5; alternatives intron_shift:88095610-88097452,terminal_exon_misalignment_5:88140015-88158576,alternative_polya_site_left:88092168; exons 16; Canonical True;
chr4	88090269	88158911	-	gene_id ENSG00000118777.10; transcript_id ENST00000237612.7; exons 16; Canonical True;
chr4	103550589	103559146	-	gene_id ENSG00000250920.1; transcript_id transcript52877.chr4.nnic; similar_reference_id ENST00000509399.1; alternatives alternative_structure_novel:103550900-103552507,exon_gain_novel:103552587-103556946,103557235-103558894,tss_match:20,exon_elongation_5:20,alternative_polya_site_left:103550589; exons 4; Canonical False;
chr4	135167470	135167870	-	gene_id novel_gene_chr4_66932; transcript_id transcript66931.chr4.nnic; exons 1; Canonical Unspliced;
chr4	139057220	139177217	-	gene_id ENSG00000109381.19; transcript_id ENST00000394235.6; exons 10; Canonical True;
chr4	139136771	139177217	-	gene_id ENSG00000109381.19; transcript_id ENST00000511006.1; exons 3; Canonical True;
chr4	145757627	145938634	-	gene_id ENSG00000151612.15; transcript_id ENST00000508784.5; exons 15; Canonical True;
chr4	145760738	145938470	-	gene_id ENSG00000151612.15; transcript_id ENST00000379448.8; exons 15; Canonical True;
chr5	124059794	124395038	-	gene_id ENSG00000253807.5; transcript_id ENST00000628324.2; exons 4; Canonical False;
chr5	131479676	131635313	-	gene_id ENSG00000158987.20; transcript_id transcript64056.chr5.nic; similar_reference_id ENST00000510071.5; alternatives major_exon_elongation_5:83,alternative_polya_site_left:131479676; exons 16; Canonical True;
chr5	131423921	131635235	-	gene_id ENSG00000158987.20; transcript_id ENST00000509018.5; exons 28; Canonical True;
chr5	131463615	131635230	-	gene_id ENSG00000158987.20; transcript_id ENST00000510071.5; exons 18; Canonical True;
chr5	131548109	131635254	-	gene_id ENSG00000273217.1; transcript_id transcript64110.chr5.nnic; similar_reference_id ENST00000510071.5; alternatives exon_gain_novel:131604694-131619953,131620174-131634961,tss_match:24,exon_elongation_5:24,alternative_polya_site_left:131548109; exons 7; Canonical False;
chr5	168548495	168579599	-	gene_id ENSG00000120137.6; transcript_id ENST00000239231.6; exons 7; Canonical True;
chr5	168556804	168579421	-	gene_id ENSG00000120137.6; transcript_id transcript98911.chr5.nnic; similar_reference_id ENST00000239231.6; alternatives exon_skipping_novel:168566267-168579255,alternative_polya_site_left:168556804; exons 6; Canonical True;
chr5	168572230	168573446	-	gene_id novel_gene_chr5_99367; transcript_id transcript99366.chr5.nnic; exons 1; Canonical Unspliced;
chr5	168572933	168573445	-	gene_id novel_gene_chr5_99337; transcript_id transcript99336.chr5.nnic; exons 1; Canonical Unspliced;
chr6	63719980	65707224	-	gene_id ENSG00000188107.14; transcript_id ENST00000503581.5; exons 43; Canonical False;
chr6	117608548	117675410	-	gene_id novel_gene_chr6_88271; transcript_id transcript88270.chr6.nnic; exons 4; Canonical False;
chr6	117658835	117675400	-	gene_id novel_gene_chr6_88260; transcript_id transcript88259.chr6.nnic; exons 5; Canonical False;
chr6	117658835	117675410	-	gene_id novel_gene_chr6_88280; transcript_id transcript88279.chr6.nnic; exons 4; Canonical False;
chr6	130839347	131063381	-	gene_id ENSG00000079819.18; transcript_id transcript93047.chr6.nnic; similar_reference_id ENST00000337057.7; alternatives exon_gain_novel:130870127-130876673,130876776-130878103,tes_match_precise:0,major_exon_elongation_5:60,correct_polya_site_left:130839347; exons 21; Canonical True;
chr6	130839353	131063257	-	gene_id ENSG00000079819.18; transcript_id ENST00000527411.5; exons 18; Canonical True;
chr6	130839347	131063224	-	gene_id ENSG00000079819.18; transcript_id ENST00000530481.5; exons 18; Canonical True;
chr6	130956298	131063381	-	gene_id ENSG00000079819.18; transcript_id transcript93432.chr6.nic; exons 2; Canonical True;
chr7	77310751	77416399	-	gene_id ENSG00000186088.15; transcript_id ENST00000257626.11; exons 31; Canonical True;
chr7	102813233	103074567	-	gene_id ENSG00000161040.16; transcript_id ENST00000313221.8; exons 20; Canonical False;
chr7	116416117	116499550	-	gene_id ENSG00000237813.3; transcript_id transcript90482.chr7.nnic; similar_reference_id ENST00000439070.1; alternatives terminal_exon_shift_novel:116417310-116499353,tes_match_precise:0,correct_polya_site_left:116416117; exons 3; Canonical False;
chr7	143721661	143836718	-	gene_id ENSG00000253882.6; transcript_id transcript111200.chr7.nnic; similar_reference_id ENST00000494978.5; alternatives fsm,terminal_exon_misalignment_3:143723474-143833246,tss_match:11,exon_elongation_5:11,correct_polya_site_left:143811969; exons 3; Canonical True;
chr7	143768923	143836715	-	gene_id ENSG00000253882.6; transcript_id transcript111210.chr7.nnic; similar_reference_id ENST00000491047.5; alternatives alternative_structure_novel:143769185-143836639,tss_match:11,exon_elongation_5:11,alternative_polya_site_left:143768923; exons 2; Canonical True;
chr7	144250042	144355578	-	gene_id ENSG00000284644.1; transcript_id transcript111496.chr7.nnic; similar_reference_id ENST00000478806.1; alternatives exon_gain_novel:144251611-144252295,144252493-144355337,alternative_polya_site_left:144250042; exons 3; Canonical True;
chr7	144307148	144355684	-	gene_id ENSG00000244479.7; transcript_id ENST00000486094.5; exons 6; Canonical False;
chr7	144311591	144355702	-	gene_id ENSG00000244479.7; transcript_id ENST00000475089.5; exons 3; Canonical True;
chr8	90059419	90095663	-	gene_id ENSG00000104327.7; transcript_id transcript45164.chr8.nic; similar_reference_id ENST00000265431.7; alternatives terminal_exon_shift_known:90082103-90095288,alternative_polya_site_left:90059419; exons 11; Canonical False;
chr8	98454633	98825680	-	gene_id ENSG00000104375.15; transcript_id ENST00000419617.6; exons 11; Canonical True;
chr8	98454631	98825670	-	gene_id ENSG00000104375.15; transcript_id ENST00000617590.1; exons 9; Canonical True;
chr8	109240919	109334384	-	gene_id ENSG00000120526.10; transcript_id ENST00000239690.8; exons 10; Canonical True;
chr8	109242679	109334268	-	gene_id ENSG00000120526.10; transcript_id transcript62520.chr8.nnic; similar_reference_id ENST00000427660.6; alternatives extra_intron_novel:109242739-109242936,terminal_exon_shift_known:109322464-109333892,tes_match_precise:-4,correct_polya_site_left:109242679; exons 11; Canonical True;
chr8	109242675	109334117	-	gene_id ENSG00000120526.10; transcript_id ENST00000519607.5; exons 11; Canonical True;
chr9	21454710	21559801	-	gene_id ENSG00000171889.3; transcript_id transcript8228.chr9.nnic; similar_reference_id ENST00000304425.3; alternatives exon_gain_novel:21477293-21490898,21491089-21559488,major_exon_elongation_5:133,alternative_polya_site_left:21454710; exons 5; Canonical False;
chr9	21454271	21559870	-	gene_id ENSG00000171889.3; transcript_id transcript8247.chr9.nnic; similar_reference_id ENST00000304425.3; alternatives terminal_exon_shift_novel:21477293-21559747,alternative_polya_site_left:21454271; exons 4; Canonical False;
chr9	21476807	21559854	-	gene_id ENSG00000171889.3; transcript_id transcript8291.chr9.nic; similar_reference_id ENST00000304425.3; alternatives incomplete_intron_retention_3:21455945-21476898,major_exon_elongation_5:186,alternative_polya_site_left:21476807; exons 3; Canonical False;
chr9	21476807	21559870	-	gene_id ENSG00000171889.3; transcript_id transcript8292.chr9.nnic; similar_reference_id ENST00000304425.3; alternatives incomplete_intron_retention_3:21455945-21476898,terminal_exon_shift_novel:21477293-21559747,alternative_polya_site_left:21476807; exons 3; Canonical False;
chr9	21487307	21490042	-	gene_id novel_gene_chr9_8536; transcript_id transcript8535.chr9.nnic; exons 1; Canonical Unspliced;
chr9	35151261	35162322	-	gene_id novel_gene_chr9_17875; transcript_id transcript17874.chr9.nnic; exons 3; Canonical False;
chr9	35640756	35646870	-	gene_id ENSG00000137101.12; transcript_id transcript18315.chr9.nnic; similar_reference_id ENST00000428948.1; alternatives extra_intron_novel:35641336-35646402,intron_alternation_novel:35646618-35646731; exons 3; Canonical False;
chr9	92031147	92115377	-	gene_id ENSG00000090054.13; transcript_id transcript40159.chr9.nic; similar_reference_id ENST00000262554.6; alternatives alt_donor_site_known:92112563-92114921,tss_match_precise:2,alternative_polya_site_left:92031147; exons 15; Canonical True;
chr9	92031999	92115375	-	gene_id ENSG00000090054.13; transcript_id ENST00000262554.6; exons 15; Canonical True;
chr9	92059179	92115383	-	gene_id ENSG00000090054.13; transcript_id ENST00000482632.5; exons 8; Canonical True;
chr10	45454593	45594905	-	gene_id ENSG00000165406.15; transcript_id ENST00000319836.7; exons 7; Canonical True;
chr10	90740823	90857697	-	gene_id ENSG00000148680.15; transcript_id ENST00000277874.10; exons 3; Canonical True;
chr10	90740823	90857697	-	gene_id ENSG00000148680.15; transcript_id ENST00000336152.7; exons 4; Canonical True;
chr10	101183797	101221688	-	gene_id novel_gene_chr10_78245; transcript_id transcript78244.chr10.nnic; exons 3; Canonical False;
chr10	108547975	108600549	-	gene_id ENSG00000203434.2; transcript_id transcript85308.chr10.nnic; similar_reference_id ENST00000366253.2; alternatives alternative_structure_novel:108549958-108564534,extra_intron_5:108564655-108600187,tes_match_precise:0,correct_polya_site_left:108547975; exons 4; Canonical False;
chr12	10332861	10336380	-	gene_id ENSG00000256288.1; transcript_id transcript14547.chr12.nic; similar_reference_id ENST00000539009.1; alternatives incomplete_intron_retention_5:10336310-10338044,tes_match_precise:0,correct_polya_site_left:10332861; exons 2; Canonical False;
chr12	25108421	25195161	-	gene_id ENSG00000118307.18; transcript_id ENST00000554533.5; exons 14; Canonical True;
chr12	62643982	62935036	-	gene_id ENSG00000111110.11; transcript_id ENST00000228705.6; exons 10; Canonical True;
chr12	95657807	95790316	-	gene_id ENSG00000074527.11; transcript_id transcript96734.chr12.nic; similar_reference_id ENST00000343702.8; alternatives alt_donor_site_known:95787469-95789785,tes_match_precise:0,correct_polya_site_left:95657807; exons 10; Canonical True;
chr12	95709152	95791260	-	gene_id ENSG00000074527.11; transcript_id transcript96786.chr12.nic; similar_reference_id ENST00000538383.5; alternatives incomplete_intron_retention_3:95683712-95710440,major_exon_elongation_5:109,alternative_polya_site_left:95709152; exons 5; Canonical True;
chr12	95657807	95790757	-	gene_id ENSG00000074527.11; transcript_id ENST00000343702.8; exons 10; Canonical True;
chr12	95657807	95790763	-	gene_id ENSG00000074527.11; transcript_id ENST00000344911.8; exons 11; Canonical True;
chr12	95658988	95791151	-	gene_id ENSG00000074527.11; transcript_id ENST00000538383.5; exons 10; Canonical True;
chr12	99719431	99719603	-	gene_id novel_gene_chr12_100191; transcript_id transcript100190.chr12.nnic; exons 1; Canonical Unspliced;
chr13	36301640	36346796	-	gene_id ENSG00000133104.12; transcript_id ENST00000451493.5; exons 9; Canonical True;
chr13	36303602	36346492	-	gene_id ENSG00000133104.12; transcript_id ENST00000494062.2; exons 10; Canonical True;
chr13	48053323	48095169	-	gene_id ENSG00000136146.14; transcript_id transcript21572.chr13.nic; similar_reference_id ENST00000258648.6; alternatives extra_intron_known:48053492-48077152,major_exon_elongation_5:66,alternative_polya_site_left:48053323; exons 8; Canonical False;
chr13	48053323	48079974	-	gene_id ENSG00000136146.14; transcript_id ENST00000495013.5; exons 3; Canonical False;
chr13	109200684	109269566	-	gene_id ENSG00000236242.1; transcript_id transcript38649.chr13.nnic; exons 3; Canonical False;
chr13	109200684	109270603	-	gene_id ENSG00000236242.1; transcript_id transcript38650.chr13.nnic; similar_reference_id ENST00000618966.1; alternatives extra_intron_3:109201488-109267733,extra_intron_3:109267841-109268785; exons 3; Canonical False;
chr13	109233189	109269563	-	gene_id novel_gene_chr13_38657; transcript_id transcript38656.chr13.nnic; exons 3; Canonical False;
chr14	53091794	53153317	-	gene_id ENSG00000100523.14; transcript_id transcript31142.chr14.nnic; similar_reference_id ENST00000357758.3; alternatives exon_gain_novel:53093445-53096116,53096219-53103682,tss_match:36,exon_elongation_5:36,alternative_polya_site_left:53091794; exons 5; Canonical True;
chr14	53091794	53153317	-	gene_id ENSG00000100523.14; transcript_id transcript31147.chr14.nic; similar_reference_id ENST00000357758.3; alternatives tss_match:36,exon_elongation_5:36,alternative_polya_site_left:53091794; exons 4; Canonical True;
chr14	53043968	53153281	-	gene_id ENSG00000100523.14; transcript_id ENST00000357758.3; exons 12; Canonical True;
chr14	53103299	53152399	-	gene_id ENSG00000100523.14; transcript_id ENST00000557445.1; exons 2; Canonical True;
chr14	53130300	53130581	-	gene_id novel_gene_chr14_31251; transcript_id transcript31250.chr14.nnic; exons 1; Canonical Unspliced;
chr14	70325081	70359730	-	gene_id ENSG00000133983.14; transcript_id ENST00000389912.6; exons 4; Canonical True;
chr14	70326068	70359699	-	gene_id ENSG00000133983.14; transcript_id ENST00000557612.5; exons 3; Canonical True;
chr14	70326064	70417073	-	gene_id ENSG00000258644.5; transcript_id ENST00000621525.4; exons 6; Canonical True;
chr14	77512017	77616813	-	gene_id ENSG00000100596.6; transcript_id transcript60137.chr14.nnic; similar_reference_id ENST00000216484.6; alternatives exon_skipping_novel:77557147-77570383,tss_match:41,exon_elongation_5:41,alternative_polya_site_left:77512017; exons 11; Canonical True;
chr14	77578329	77616813	-	gene_id ENSG00000100596.6; transcript_id transcript60197.chr14.nic; similar_reference_id ENST00000557566.1; alternatives extra_intron_5:77597381-77616447,alternative_polya_site_left:77578329; exons 3; Canonical True;
chr14	77505997	77616772	-	gene_id ENSG00000100596.6; transcript_id ENST00000216484.6; exons 12; Canonical True;
chr14	92038652	92106609	-	gene_id ENSG00000066427.21; transcript_id ENST00000558190.5; exons 11; Canonical True;
chr14	102224500	102305214	-	gene_id ENSG00000080823.22; transcript_id transcript73390.chr14.nic; similar_reference_id ENST00000361847.6; alternatives alternative_structure_known:102224795-102232534,tss_match:15,exon_elongation_5:15,alternative_polya_site_left:102224500; exons 10; Canonical True;
chr14	102228827	102305167	-	gene_id ENSG00000080823.22; transcript_id ENST00000521766.5; exons 9; Canonical True;
chr14	102228841	102305199	-	gene_id ENSG00000080823.22; transcript_id ENST00000361847.6; exons 12; Canonical True;
chr14	102228839	102305150	-	gene_id ENSG00000080823.22; transcript_id ENST00000522874.5; exons 12; Canonical True;
chr14	102228839	102305175	-	gene_id ENSG00000080823.22; transcript_id ENST00000518686.5; exons 11; Canonical True;
chr15	42878560	42920842	-	gene_id ENSG00000128881.16; transcript_id transcript16420.chr15.nic; similar_reference_id ENST00000564431.5; alternatives major_exon_elongation_5:82,alternative_polya_site_left:42878560; exons 2; Canonical True;
chr15	42776918	42920808	-	gene_id ENSG00000128881.16; transcript_id ENST00000567840.5; exons 12; Canonical False;
chr15	42886395	42887059	-	gene_id novel_gene_chr15_16636; transcript_id transcript16635.chr15.nnic; exons 1; Canonical Unspliced;
chr15	55673212	55743165	-	gene_id ENSG00000166450.12; transcript_id transcript29238.chr15.nic; similar_reference_id ENST00000389286.8; alternatives incomplete_intron_retention_3:55672634-55673370,major_exon_elongation_5:187,alternative_polya_site_left:55673212; exons 10; Canonical True;
chr16	29396428	29497531	-	gene_id ENSG00000254634.4; transcript_id transcript36525.chr16.nnic; exons 3; Canonical False;
chr16	30833626	30894301	-	gene_id ENSG00000099385.11; transcript_id ENST00000380317.8; exons 6; Canonical True;
chr16	30851246	30893941	-	gene_id ENSG00000099385.11; transcript_id ENST00000572628.5; exons 6; Canonical False;
chr16	71658674	71723942	-	gene_id ENSG00000040199.18; transcript_id transcript69389.chr16.nic; similar_reference_id ENST00000567016.1; alternatives major_exon_elongation_5:61,alternative_polya_site_left:71658674; exons 14; Canonical True;
chr16	71684124	71723942	-	gene_id ENSG00000040199.18; transcript_id transcript69675.chr16.nic; similar_reference_id ENST00000538126.5; alternatives incomplete_intron_retention_3:71681906-71684475,major_exon_elongation_5:131,alternative_polya_site_left:71684124; exons 5; Canonical True;
chr16	71688609	71723942	-	gene_id ENSG00000040199.18; transcript_id transcript69676.chr16.nnic; similar_reference_id ENST00000538126.5; alternatives alternative_structure_novel:71688940-71690518,major_exon_elongation_5:131,alternative_polya_site_left:71688609; exons 5; Canonical False;
chr16	71689386	71723942	-	gene_id ENSG00000040199.18; transcript_id transcript69750.chr16.nic; similar_reference_id ENST00000538126.5; alternatives incomplete_intron_retention_3:71684602-71690518,major_exon_elongation_5:131,alternative_polya_site_left:71689386; exons 4; Canonical True;
chr16	71690550	71723933	-	gene_id ENSG00000040199.18; transcript_id transcript69940.chr16.nnic; similar_reference_id ENST00000566738.1; alternatives alternative_structure_novel:71702732-71723768,extra_intron_3:71690710-71702597; exons 3; Canonical True;
chr16	71690520	71723921	-	gene_id ENSG00000040199.18; transcript_id transcript70028.chr16.nnic; similar_reference_id ENST00000566738.1; alternatives alternative_structure_novel:71690710-71723768; exons 2; Canonical True;
chr16	71648170	71723881	-	gene_id ENSG00000040199.18; transcript_id ENST00000567016.1; exons 19; Canonical True;
chr17	75236599	75261674	-	gene_id ENSG00000125447.16; transcript_id transcript112940.chr17.nic; similar_reference_id ENST00000537686.5; alternatives alt_acceptor_site_known:75237533-75238651,tes_match_precise:0,correct_polya_site_left:75236599; exons 17; Canonical True;
chr17	75236599	75261803	-	gene_id ENSG00000125447.16; transcript_id ENST00000537686.5; exons 17; Canonical True;
chr17	75236599	75261674	-	gene_id ENSG00000125447.16; transcript_id transcript112964.chr17.nic; similar_reference_id ENST00000537686.5; alternatives intron_retention:75238390-75238651,tes_match_precise:0,correct_polya_site_left:75236599; exons 16; Canonical True;
chr17	75236599	75261599	-	gene_id ENSG00000125447.16; transcript_id ENST00000538886.5; exons 16; Canonical True;
chr17	75236599	75261599	-	gene_id ENSG00000125447.16; transcript_id ENST00000621870.4; exons 18; Canonical True;
chr17	75257596	75258959	-	gene_id novel_gene_chr17_113207; transcript_id transcript113206.chr17.nnic; exons 1; Canonical Unspliced;
chr17	80387955	80415407	-	gene_id ENSG00000263069.5; transcript_id transcript123250.chr17.nnic; similar_reference_id ENST00000560083.1; alternatives incomplete_intron_retention_3:80386892-80388611,alternative_structure_novel:80389332-80414928; exons 2; Canonical True;
chr17	80405941	80406241	-	gene_id novel_gene_chr17_123295; transcript_id transcript123294.chr17.nnic; exons 1; Canonical Unspliced;
chr18	23257164	23437991	-	gene_id ENSG00000134490.13; transcript_id transcript12889.chr18.nnic; similar_reference_id ENST00000383233.7; alternatives terminal_exon_shift_novel:23257433-23309679,major_exon_elongation_5:87,alternative_polya_site_left:23257164; exons 15; Canonical True;
chr19	5842888	5851448	-	gene_id ENSG00000171124.12; transcript_id ENST00000458379.6; exons 2; Canonical True;
chr19	5842891	5851470	-	gene_id ENSG00000171124.12; transcript_id ENST00000589918.5; exons 3; Canonical False;
chr19	9748137	9748939	-	gene_id novel_gene_chr19_22392; transcript_id transcript22391.chr19.nnic; exons 1; Canonical Unspliced;
chr19	9748256	9749786	-	gene_id novel_gene_chr19_22418; transcript_id transcript22417.chr19.nnic; exons 1; Canonical Unspliced;
chr19	15827045	15835786	-	gene_id ENSG00000267308.1; transcript_id ENST00000589310.1; exons 2; Canonical True;
chr19	20340269	20424968	-	gene_id ENSG00000231205.11; transcript_id ENST00000542380.5; exons 3; Canonical False;
chr19	20340368	20424958	-	gene_id ENSG00000231205.11; transcript_id ENST00000541160.5; exons 3; Canonical True;
chr19	23338616	23395527	-	gene_id ENSG00000167232.13; transcript_id transcript57920.chr19.nnic; similar_reference_id ENST00000300619.11; alternatives alternative_structure_novel:23339261-23373741,extra_intron_3:23338888-23339230,tss_match:-32,alternative_polya_site_left:23338616; exons 5; Canonical False;
chr19	23338749	23395456	-	gene_id ENSG00000167232.13; transcript_id ENST00000599743.5; exons 4; Canonical False;
chr19	23348510	23351581	-	gene_id novel_gene_chr19_58588; transcript_id transcript58587.chr19.nnic; exons 1; Canonical Unspliced;
chr19	46189029	46203204	-	gene_id ENSG00000268621.5; transcript_id transcript94822.chr19.nnic; similar_reference_id ENST00000598518.5; alternatives extra_intron_novel:46189230-46190284,major_exon_elongation_5:143,alternative_polya_site_left:46189029; exons 4; Canonical False;
chr19	46189636	46203061	-	gene_id ENSG00000268621.5; transcript_id ENST00000598518.5; exons 3; Canonical False;
chr19	46198100	46202965	-	gene_id ENSG00000268621.5; transcript_id ENST00000598754.1; exons 2; Canonical False;
chr19	46200787	46203082	-	gene_id ENSG00000268621.5; transcript_id ENST00000595673.1; exons 2; Canonical False;
chr19	52612378	52690553	-	gene_id ENSG00000167766.18; transcript_id transcript113052.chr19.nnic; similar_reference_id ENST00000594682.6; alternatives exon_skipping_novel:52619063-52655560,tes_match_precise:0,major_exon_elongation_5:66,correct_polya_site_left:52612378; exons 5; Canonical True;
chr19	52618267	52690552	-	gene_id ENSG00000167766.18; transcript_id transcript113058.chr19.nic; similar_reference_id ENST00000596440.5; alternatives intron_retention:52618766-52618935,major_exon_elongation_5:65,alternative_polya_site_left:52618267; exons 5; Canonical True;
chr19	52612367	52638390	-	gene_id ENSG00000167766.18; transcript_id ENST00000536937.5; exons 4; Canonical True;
chr19	52612378	52690487	-	gene_id ENSG00000167766.18; transcript_id ENST00000594682.6; exons 6; Canonical True;
chr19	52612367	52638390	-	gene_id ENSG00000167766.18; transcript_id ENST00000301096.7; exons 3; Canonical True;
chr19	52714846	52775254	-	gene_id ENSG00000213020.9; transcript_id transcript114389.chr19.nnic; exons 2; Canonical True;
chr20	45684653	45780879	-	gene_id ENSG00000182931.9; transcript_id transcript44850.chr20.nnic; similar_reference_id ENST00000330523.9; alternatives alternative_structure_novel:45704562-45706046,extra_intron_5:45758432-45780702,extra_intron_5:45709000-45758391,extra_intron_5:45706131-45708809,tes_match_precise:0,correct_polya_site_left:45684653; exons 7; Canonical False;
chrX	4544072	4545976	-	gene_id novel_gene_chrX_341; transcript_id transcript340.chrX.nnic; exons 1; Canonical Unspliced;
chrX	37454910	37460972	-	gene_id novel_gene_chrX_11046; transcript_id transcript11045.chrX.nnic; exons 3; Canonical False;
chrX	50591647	50814301	-	gene_id ENSG00000158352.15; transcript_id ENST00000289292.11; exons 10; Canonical True;
chrX	82697267	82766147	-	gene_id novel_gene_chrX_36767; transcript_id transcript36766.chrX.nnic; exons 4; Canonical False;
chrX	82714228	82765916	-	gene_id novel_gene_chrX_36772; transcript_id transcript36771.chrX.nnic; exons 4; Canonical False;