Information for 3-AAACGATA (Motif 12)


Reverse Opposite:

p-value:1e-7
log p-value:-1.738e+01
Information Content per bp:1.808
Number of Target Sequences with motif332.0
Percentage of Target Sequences with motif8.66%
Number of Background Sequences with motif2952.8
Percentage of Background Sequences with motif6.40%
Average Position of motif in Targets123.0 +/- 85.2bp
Average Position of motif in Background113.9 +/- 65.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0044.1_Homez/Jaspar

Match Rank:1
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----AAACGATA----
NNTAAAAACGATGTTNT

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AAACGATA--
AGAAACGAAAGT

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AAACGATA----
-AAGGATATNTN

PB0033.1_Irf3_1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AAACGATA---
GAGAACCGAAACTG

PB0037.1_Isgf3g_1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AAACGATA----
CAAAATCGAAACTAA

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AAACGATA
AACCGANA

MA0040.1_Foxq1/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AAACGATA
AATAAACAATN

MA0517.1_STAT2::STAT1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AAACGATA----
GGAAANTGAAACTNA

PB0035.1_Irf5_1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AAACGATA----
ATAAACCGAAACCAA

MA0087.1_Sox5/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAACGATA
NAACAAT-