Information for 8-AATATAGTGC (Motif 13)


Reverse Opposite:

p-value:1e-6
log p-value:-1.565e+01
Information Content per bp:1.824
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif159.2
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets101.4 +/- 71.7bp
Average Position of motif in Background113.0 +/- 65.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AATATAGTGC
CCAAAAATAG---

MA0033.1_FOXL1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AATATAGTGC
TATACATA----

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AATATAGTGC--
CTAATATTGCTAAA

PB0079.1_Sry_1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AATATAGTGC--
NANTATTATAATTNNN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AATATAGTGC
DCYAAAAATAGM--

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AATATAGTGC----
NNNANTGCAGTGCNNTT

MF0008.1_MADS_class/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AATATAGTGC
CCATATATGG---

PB0174.1_Sox30_2/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AATATAGTGC--
TAAGATTATAATACGG

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AATATAGTGC----
AANTTATTGTTCTNNA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AATATAGTGC--
--TTGAGTGSTT