Information for 9-TCMTWGTMAC (Motif 14)


Reverse Opposite:

p-value:1e-6
log p-value:-1.420e+01
Information Content per bp:1.833
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif81.7
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets116.3 +/- 89.2bp
Average Position of motif in Background119.0 +/- 64.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TCMTWGTMAC--
SCCTAGCAACAG

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TCMTWGTMAC---
TACCCTAGTTACCGA

MA0510.1_RFX5/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCMTWGTMAC---
CTCCCTGGCAACAGC

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TCMTWGTMAC---
CCGCATAGCAACGGA

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCMTWGTMAC---
TACCATAGCAACGGT

PB0181.1_Spdef_2/Jaspar

Match Rank:6
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------TCMTWGTMAC
GATAACATCCTAGTAG-

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------TCMTWGTMAC-------
TGTGACCCTTAGCAACCGATTAA

PB0158.1_Rfx3_2/Jaspar

Match Rank:8
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------TCMTWGTMAC-------
ACTGACCCTTGGTTACCACAAAG

MA0078.1_Sox17/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCMTWGTMAC
CTCATTGTC--

MA0463.1_Bcl6/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCMTWGTMAC--
TTTCCTAGAAAGCA